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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005343
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|accession_numbers=CAGE;DRX008129;DRR009001;DRZ000426;DRZ001811;DRZ011776;DRZ013161
|accession_numbers_RNASeq=sRNA-Seq;DRX037147;DRR041513;DRZ007155
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|comment=Previously: Endothelial Progenitor Cells, donor1
|comment=Previously: Endothelial Progenitor Cells, donor1
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|created_by=
|creation_date=
|creation_date=
|data_phase=2
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|def=
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Line 35: Line 45:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor1.CNhs10858.11229-116C5.hg38.nobarcode.ctss.bed.gz
|id=FF:11229-116C5
|id=FF:11229-116C5
|is_a=CL:0000576;;EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000248
|is_a=CL:0000576;;EFO:0002091;;FF:0000248
|is_obsolete=
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|microRNAs=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.TGACCA.11229
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11229
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.TGACCA.11229
|name=CD14+ monocyte derived endothelial progenitor cells, donor1
|name=CD14+ monocyte derived endothelial progenitor cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 66:
|profile_cagescan=NCig10041,,,
|profile_cagescan=NCig10041,,,
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|profile_hcage=CNhs10858,LSID702,release008,COMPLETED
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Line 56: Line 83:
|rna_tube_id=116C5
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|rna_weight_ug=10
|rnaseq_library_id=SRhi10010.TGACCA
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|sample_category=primary cells
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|sample_cell_line=
Line 69: Line 98:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.97526492498252e-238!GO:0043227;membrane-bound organelle;6.2940412577047e-154!GO:0043231;intracellular membrane-bound organelle;1.61435819219823e-153!GO:0005737;cytoplasm;7.09911092423385e-150!GO:0043226;organelle;3.15241131174634e-136!GO:0043229;intracellular organelle;1.59440856564531e-135!GO:0044444;cytoplasmic part;1.03634515406543e-117!GO:0044422;organelle part;1.88464675037384e-96!GO:0044446;intracellular organelle part;1.02148316060027e-94!GO:0044237;cellular metabolic process;1.84645138333896e-75!GO:0044238;primary metabolic process;2.90679005699548e-73!GO:0032991;macromolecular complex;2.56787025684072e-69!GO:0043170;macromolecule metabolic process;6.85539075361576e-68!GO:0003723;RNA binding;2.37890108781729e-57!GO:0030529;ribonucleoprotein complex;2.11733328665161e-56!GO:0044428;nuclear part;1.17434863036348e-52!GO:0005739;mitochondrion;8.61989035845609e-52!GO:0043233;organelle lumen;2.98934731393102e-51!GO:0031974;membrane-enclosed lumen;2.98934731393102e-51!GO:0005515;protein binding;1.4453967144238e-50!GO:0031090;organelle membrane;2.80976925842298e-50!GO:0033036;macromolecule localization;1.17046088507186e-49!GO:0005634;nucleus;3.17727737554898e-49!GO:0015031;protein transport;4.90652616306e-48!GO:0019538;protein metabolic process;2.63832763351525e-47!GO:0045184;establishment of protein localization;3.42787396478326e-47!GO:0008104;protein localization;2.87839624731513e-46!GO:0044260;cellular macromolecule metabolic process;1.65033374659907e-43!GO:0044267;cellular protein metabolic process;6.18192154115388e-43!GO:0006412;translation;8.18100138453858e-41!GO:0044429;mitochondrial part;6.3236631980108e-37!GO:0043234;protein complex;3.85371919652464e-36!GO:0006396;RNA processing;6.02306303660924e-36!GO:0009058;biosynthetic process;1.37933084115818e-35!GO:0031967;organelle envelope;2.62393557764806e-35!GO:0031975;envelope;5.74171714054034e-35!GO:0009059;macromolecule biosynthetic process;1.62384170595171e-34!GO:0043283;biopolymer metabolic process;1.36150865835864e-33!GO:0005829;cytosol;4.35876765246138e-33!GO:0016071;mRNA metabolic process;7.13335767633621e-33!GO:0031981;nuclear lumen;8.12012775019159e-32!GO:0005840;ribosome;2.27478519699259e-31!GO:0046907;intracellular transport;5.93213409819011e-31!GO:0044249;cellular biosynthetic process;3.41830608944974e-30!GO:0006886;intracellular protein transport;4.50554212851007e-30!GO:0008380;RNA splicing;4.24681977830709e-29!GO:0010467;gene expression;1.60829954128448e-28!GO:0006397;mRNA processing;1.03166811039971e-27!GO:0003735;structural constituent of ribosome;1.50538692197393e-27!GO:0005740;mitochondrial envelope;5.32726031330366e-26!GO:0016043;cellular component organization and biogenesis;7.43863213672319e-26!GO:0033279;ribosomal subunit;1.19784124762059e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.39604861152223e-25!GO:0031966;mitochondrial membrane;1.38096643451131e-24!GO:0065003;macromolecular complex assembly;6.99320204560453e-24!GO:0051649;establishment of cellular localization;1.15184035273485e-23!GO:0051641;cellular localization;2.3432553596138e-23!GO:0006119;oxidative phosphorylation;3.95070803470753e-23!GO:0019866;organelle inner membrane;3.95070803470753e-23!GO:0005654;nucleoplasm;4.95328843254048e-22!GO:0005773;vacuole;1.28878726210702e-21!GO:0005743;mitochondrial inner membrane;2.47805616923576e-21!GO:0005681;spliceosome;2.49307328685882e-21!GO:0000323;lytic vacuole;3.07506747316651e-20!GO:0005764;lysosome;3.07506747316651e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.22034569808148e-20!GO:0022607;cellular component assembly;4.63312832762859e-20!GO:0044265;cellular macromolecule catabolic process;1.66877705878771e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.01856952207772e-19!GO:0012505;endomembrane system;6.73929173485609e-19!GO:0048770;pigment granule;8.14836310310324e-19!GO:0042470;melanosome;8.14836310310324e-19!GO:0006512;ubiquitin cycle;1.36075244165096e-18!GO:0044248;cellular catabolic process;5.02138466571063e-18!GO:0016192;vesicle-mediated transport;7.04054075381944e-18!GO:0044445;cytosolic part;1.13076877687948e-17!GO:0000166;nucleotide binding;1.3530317188377e-17!GO:0044451;nucleoplasm part;2.11276894435316e-17!GO:0006915;apoptosis;2.77131389805543e-17!GO:0012501;programmed cell death;3.32506130629421e-17!GO:0043285;biopolymer catabolic process;1.21697727107741e-16!GO:0044455;mitochondrial membrane part;1.33984315227917e-16!GO:0009057;macromolecule catabolic process;2.6566700489765e-16!GO:0008219;cell death;3.83071790958617e-16!GO:0016265;death;3.83071790958617e-16!GO:0051186;cofactor metabolic process;4.3253522925756e-16!GO:0016874;ligase activity;5.36988813144673e-16!GO:0008134;transcription factor binding;1.02478422608422e-15!GO:0005794;Golgi apparatus;1.08020525980794e-15!GO:0006259;DNA metabolic process;1.95248115149863e-15!GO:0006996;organelle organization and biogenesis;2.03115615380745e-15!GO:0022618;protein-RNA complex assembly;2.13511687740126e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.16073307692783e-15!GO:0005746;mitochondrial respiratory chain;2.293666317868e-15!GO:0044257;cellular protein catabolic process;2.6362661320529e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.09863613666424e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;3.33718275206712e-15!GO:0016462;pyrophosphatase activity;3.47401414052604e-15!GO:0019941;modification-dependent protein catabolic process;3.62442766949677e-15!GO:0043632;modification-dependent macromolecule catabolic process;3.62442766949677e-15!GO:0006511;ubiquitin-dependent protein catabolic process;4.59205627489693e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.1414774670238e-15!GO:0006605;protein targeting;5.92237618484954e-15!GO:0005783;endoplasmic reticulum;9.51489806975907e-15!GO:0003676;nucleic acid binding;1.73607070837386e-14!GO:0017111;nucleoside-triphosphatase activity;1.78980255026321e-14!GO:0006457;protein folding;2.20792934521398e-14!GO:0043412;biopolymer modification;3.27878581592462e-14!GO:0050136;NADH dehydrogenase (quinone) activity;4.52013806324962e-14!GO:0003954;NADH dehydrogenase activity;4.52013806324962e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.52013806324962e-14!GO:0015935;small ribosomal subunit;4.78519488189667e-14!GO:0031980;mitochondrial lumen;1.21530115735746e-13!GO:0005759;mitochondrial matrix;1.21530115735746e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.59625797966032e-13!GO:0006732;coenzyme metabolic process;2.75619509387378e-13!GO:0016604;nuclear body;3.41435855814956e-13!GO:0006464;protein modification process;6.88575680469639e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.95481930160914e-13!GO:0032553;ribonucleotide binding;7.07952055054594e-13!GO:0032555;purine ribonucleotide binding;7.07952055054594e-13!GO:0030163;protein catabolic process;7.79954537060272e-13!GO:0017076;purine nucleotide binding;1.00087010979262e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.08371578984494e-12!GO:0042773;ATP synthesis coupled electron transport;1.08371578984494e-12!GO:0015934;large ribosomal subunit;1.40724067340847e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.38800751613502e-12!GO:0045271;respiratory chain complex I;2.38800751613502e-12!GO:0005747;mitochondrial respiratory chain complex I;2.38800751613502e-12!GO:0044432;endoplasmic reticulum part;3.49504273325096e-12!GO:0048193;Golgi vesicle transport;5.06922474667929e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.97277216657648e-12!GO:0005768;endosome;9.9870775055716e-12!GO:0016070;RNA metabolic process;1.4295544824833e-11!GO:0006913;nucleocytoplasmic transport;1.80417907111326e-11!GO:0016607;nuclear speck;1.93623339780104e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.24767237235512e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.10085204649728e-11!GO:0008135;translation factor activity, nucleic acid binding;3.30720968926219e-11!GO:0051169;nuclear transport;3.4728983399739e-11!GO:0043687;post-translational protein modification;4.05842026617053e-11!GO:0009056;catabolic process;4.64789727933918e-11!GO:0016887;ATPase activity;2.35320982437934e-10!GO:0042623;ATPase activity, coupled;2.46664526322886e-10!GO:0005730;nucleolus;2.64636878036292e-10!GO:0019829;cation-transporting ATPase activity;2.73811037619141e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.05109041913664e-10!GO:0008639;small protein conjugating enzyme activity;3.05714996812568e-10!GO:0005524;ATP binding;3.55556251752339e-10!GO:0051246;regulation of protein metabolic process;4.12875158135186e-10!GO:0042981;regulation of apoptosis;4.17466497831361e-10!GO:0032559;adenyl ribonucleotide binding;4.72938960241778e-10!GO:0009055;electron carrier activity;4.83361899337926e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;5.20249522864115e-10!GO:0000375;RNA splicing, via transesterification reactions;5.20249522864115e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.20249522864115e-10!GO:0016787;hydrolase activity;5.59244541462654e-10!GO:0004842;ubiquitin-protein ligase activity;6.07899608862883e-10!GO:0005635;nuclear envelope;6.46444271026846e-10!GO:0043067;regulation of programmed cell death;6.93022877388441e-10!GO:0006413;translational initiation;7.23418922791075e-10!GO:0051082;unfolded protein binding;7.62664950968335e-10!GO:0005774;vacuolar membrane;7.70876446362956e-10!GO:0030554;adenyl nucleotide binding;8.42833290670586e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.60280794027021e-10!GO:0006446;regulation of translational initiation;8.63396556206202e-10!GO:0019787;small conjugating protein ligase activity;8.87100681460992e-10!GO:0015986;ATP synthesis coupled proton transport;1.02715270938663e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.02715270938663e-09!GO:0005789;endoplasmic reticulum membrane;1.10104730376189e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.35529084399168e-09!GO:0005770;late endosome;1.41816540664209e-09!GO:0003743;translation initiation factor activity;1.8218721892578e-09!GO:0006974;response to DNA damage stimulus;1.86490065792702e-09!GO:0015078;hydrogen ion transmembrane transporter activity;2.07124184039781e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.81943353111995e-09!GO:0009150;purine ribonucleotide metabolic process;2.9964634759736e-09!GO:0006163;purine nucleotide metabolic process;3.05917817322214e-09!GO:0051188;cofactor biosynthetic process;3.112196551854e-09!GO:0009259;ribonucleotide metabolic process;3.12538372225821e-09!GO:0005761;mitochondrial ribosome;3.73819691484048e-09!GO:0000313;organellar ribosome;3.73819691484048e-09!GO:0006461;protein complex assembly;4.99218089758943e-09!GO:0008565;protein transporter activity;5.46296489330282e-09!GO:0044437;vacuolar part;5.65995062016555e-09!GO:0005765;lysosomal membrane;6.05160869814533e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.87252481929853e-09!GO:0003712;transcription cofactor activity;7.51548148140719e-09!GO:0006164;purine nucleotide biosynthetic process;7.51548148140719e-09!GO:0007243;protein kinase cascade;1.21843671258521e-08!GO:0009260;ribonucleotide biosynthetic process;1.77367720930359e-08!GO:0006754;ATP biosynthetic process;1.84874244223475e-08!GO:0006753;nucleoside phosphate metabolic process;1.84874244223475e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.61059957892626e-08!GO:0017038;protein import;2.91918158861228e-08!GO:0044440;endosomal part;3.09139311133289e-08!GO:0010008;endosome membrane;3.09139311133289e-08!GO:0016881;acid-amino acid ligase activity;3.63252639559698e-08!GO:0046034;ATP metabolic process;4.24818468740166e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.4685120485495e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.4685120485495e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.56116031300473e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.56116031300473e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.56116031300473e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.06931885851768e-08!GO:0043228;non-membrane-bound organelle;6.61354091693319e-08!GO:0043232;intracellular non-membrane-bound organelle;6.61354091693319e-08!GO:0009060;aerobic respiration;6.61354091693319e-08!GO:0009108;coenzyme biosynthetic process;6.73381568247228e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.58146858051546e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.58146858051546e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.95950836192644e-08!GO:0005793;ER-Golgi intermediate compartment;8.24527848341713e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.67121649661963e-08!GO:0031965;nuclear membrane;9.58429114521212e-08!GO:0031982;vesicle;9.62898069966435e-08!GO:0006950;response to stress;1.29090662647424e-07!GO:0004386;helicase activity;1.46767907767531e-07!GO:0044453;nuclear membrane part;1.63849041598011e-07!GO:0009141;nucleoside triphosphate metabolic process;1.97494298027433e-07!GO:0006793;phosphorus metabolic process;2.00214946685477e-07!GO:0006796;phosphate metabolic process;2.00214946685477e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.15791713844087e-07!GO:0016310;phosphorylation;2.31716189471104e-07!GO:0050657;nucleic acid transport;2.59291442843746e-07!GO:0051236;establishment of RNA localization;2.59291442843746e-07!GO:0050658;RNA transport;2.59291442843746e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.78838214294857e-07!GO:0006281;DNA repair;2.83679828257072e-07!GO:0007049;cell cycle;2.89794509285031e-07!GO:0050794;regulation of cellular process;3.14687225073692e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.47488067875038e-07!GO:0006403;RNA localization;3.94283721399938e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.47755991758834e-07!GO:0019899;enzyme binding;4.59424828101929e-07!GO:0006417;regulation of translation;4.83153624061909e-07!GO:0008026;ATP-dependent helicase activity;5.21749997946622e-07!GO:0031410;cytoplasmic vesicle;5.8781602306487e-07!GO:0043069;negative regulation of programmed cell death;6.24706749170218e-07!GO:0032446;protein modification by small protein conjugation;7.41321681229407e-07!GO:0007242;intracellular signaling cascade;7.49635480513525e-07!GO:0043066;negative regulation of apoptosis;7.69821687889831e-07!GO:0045333;cellular respiration;8.35529883836406e-07!GO:0065009;regulation of a molecular function;8.55313212130367e-07!GO:0008047;enzyme activator activity;9.30075542258435e-07!GO:0008654;phospholipid biosynthetic process;1.02972233894715e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.13633586867446e-06!GO:0016567;protein ubiquitination;1.35289613737826e-06!GO:0006099;tricarboxylic acid cycle;1.45447550914155e-06!GO:0046356;acetyl-CoA catabolic process;1.45447550914155e-06!GO:0031988;membrane-bound vesicle;1.52901645057441e-06!GO:0006916;anti-apoptosis;1.5462715393318e-06!GO:0016568;chromatin modification;1.76456563160102e-06!GO:0051170;nuclear import;1.82972428809163e-06!GO:0005643;nuclear pore;1.93226422886755e-06!GO:0009719;response to endogenous stimulus;2.37457535272221e-06!GO:0065002;intracellular protein transport across a membrane;2.37457535272221e-06!GO:0004298;threonine endopeptidase activity;2.37457535272221e-06!GO:0000151;ubiquitin ligase complex;2.57252305849687e-06!GO:0044431;Golgi apparatus part;2.61390881101954e-06!GO:0031252;leading edge;2.61687873060897e-06!GO:0007040;lysosome organization and biogenesis;2.62538303793724e-06!GO:0007264;small GTPase mediated signal transduction;2.85056705568183e-06!GO:0009117;nucleotide metabolic process;3.0018175547097e-06!GO:0006606;protein import into nucleus;3.10007742257574e-06!GO:0051187;cofactor catabolic process;3.10194421601481e-06!GO:0048475;coated membrane;3.21663265933256e-06!GO:0030117;membrane coat;3.21663265933256e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.65612214718251e-06!GO:0043566;structure-specific DNA binding;4.32481525971924e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;4.37099816897352e-06!GO:0048523;negative regulation of cellular process;4.47660691982025e-06!GO:0009615;response to virus;4.54448823096451e-06!GO:0003697;single-stranded DNA binding;4.6876424753823e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.9768958995103e-06!GO:0030120;vesicle coat;5.1598431493757e-06!GO:0030662;coated vesicle membrane;5.1598431493757e-06!GO:0006084;acetyl-CoA metabolic process;5.1598431493757e-06!GO:0016491;oxidoreductase activity;5.32293107905057e-06!GO:0016740;transferase activity;5.70380017138543e-06!GO:0005096;GTPase activator activity;6.19189185245658e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.3730705548975e-06!GO:0031902;late endosome membrane;6.86675884236108e-06!GO:0051028;mRNA transport;7.13436503659036e-06!GO:0006752;group transfer coenzyme metabolic process;7.74262708636001e-06!GO:0046930;pore complex;7.74262708636001e-06!GO:0031326;regulation of cellular biosynthetic process;9.37527750131429e-06!GO:0007033;vacuole organization and biogenesis;9.91126368022269e-06!GO:0045259;proton-transporting ATP synthase complex;1.03120040461421e-05!GO:0006091;generation of precursor metabolites and energy;1.03254648246475e-05!GO:0003713;transcription coactivator activity;1.17121216806363e-05!GO:0006323;DNA packaging;1.1783653176144e-05!GO:0009109;coenzyme catabolic process;1.27282559841572e-05!GO:0051726;regulation of cell cycle;1.44542703838781e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.616216942448e-05!GO:0015399;primary active transmembrane transporter activity;1.616216942448e-05!GO:0000074;regulation of progression through cell cycle;1.79773341837515e-05!GO:0030695;GTPase regulator activity;1.85207215403811e-05!GO:0006818;hydrogen transport;1.95085031954053e-05!GO:0006613;cotranslational protein targeting to membrane;1.98385306300736e-05!GO:0009889;regulation of biosynthetic process;2.06069573027347e-05!GO:0051276;chromosome organization and biogenesis;2.10581860614707e-05!GO:0044262;cellular carbohydrate metabolic process;2.13330618654993e-05!GO:0006399;tRNA metabolic process;2.40395074707985e-05!GO:0042254;ribosome biogenesis and assembly;2.7449175761919e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.7449175761919e-05!GO:0016044;membrane organization and biogenesis;2.92472007705445e-05!GO:0015992;proton transport;3.54527025070405e-05!GO:0016197;endosome transport;3.88848756238713e-05!GO:0006643;membrane lipid metabolic process;4.16954246440166e-05!GO:0006366;transcription from RNA polymerase II promoter;4.53248573932706e-05!GO:0022890;inorganic cation transmembrane transporter activity;4.55118905253415e-05!GO:0048519;negative regulation of biological process;4.68301108264699e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.71010379660829e-05!GO:0007034;vacuolar transport;4.85302004719999e-05!GO:0000245;spliceosome assembly;4.95631780224743e-05!GO:0005798;Golgi-associated vesicle;5.17296359424999e-05!GO:0050789;regulation of biological process;5.25191647814083e-05!GO:0005525;GTP binding;5.31242943988048e-05!GO:0043492;ATPase activity, coupled to movement of substances;6.66545953688478e-05!GO:0032940;secretion by cell;6.75494874057189e-05!GO:0007265;Ras protein signal transduction;7.61816961358335e-05!GO:0006672;ceramide metabolic process;7.8058652301786e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.8625605798855e-05!GO:0004812;aminoacyl-tRNA ligase activity;7.8625605798855e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.8625605798855e-05!GO:0043065;positive regulation of apoptosis;7.91909750748376e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;8.07545628894833e-05!GO:0046467;membrane lipid biosynthetic process;8.19222996937915e-05!GO:0005083;small GTPase regulator activity;8.38084448142443e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.78575614537816e-05!GO:0007005;mitochondrion organization and biogenesis;9.03647702246212e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;9.15914444397352e-05!GO:0045786;negative regulation of progression through cell cycle;9.2305465534786e-05!GO:0000139;Golgi membrane;9.40120598259484e-05!GO:0022402;cell cycle process;9.49113590253875e-05!GO:0043087;regulation of GTPase activity;0.000102940379672118!GO:0043068;positive regulation of programmed cell death;0.000113323498891485!GO:0006612;protein targeting to membrane;0.000119864990764826!GO:0003724;RNA helicase activity;0.000121742658222345!GO:0046519;sphingoid metabolic process;0.000125498478057048!GO:0043038;amino acid activation;0.000127399514070014!GO:0006418;tRNA aminoacylation for protein translation;0.000127399514070014!GO:0043039;tRNA aminoacylation;0.000127399514070014!GO:0005769;early endosome;0.000137501758729609!GO:0051168;nuclear export;0.000140558746727672!GO:0016779;nucleotidyltransferase activity;0.000151866510498124!GO:0046474;glycerophospholipid biosynthetic process;0.000154897264227597!GO:0006650;glycerophospholipid metabolic process;0.000157476794604355!GO:0050790;regulation of catalytic activity;0.000163957686927363!GO:0051336;regulation of hydrolase activity;0.000168766056594505!GO:0005885;Arp2/3 protein complex;0.00018829145937467!GO:0016564;transcription repressor activity;0.000207409392362407!GO:0006401;RNA catabolic process;0.00020799920532147!GO:0001726;ruffle;0.000241461202028455!GO:0009967;positive regulation of signal transduction;0.000250586416206159!GO:0043623;cellular protein complex assembly;0.000280945072171644!GO:0009165;nucleotide biosynthetic process;0.000288419476864157!GO:0045045;secretory pathway;0.000318399452266482!GO:0032561;guanyl ribonucleotide binding;0.000339500122762193!GO:0019001;guanyl nucleotide binding;0.000339500122762193!GO:0051427;hormone receptor binding;0.000357992909014868!GO:0006917;induction of apoptosis;0.000377740043994909!GO:0008234;cysteine-type peptidase activity;0.000404267643057901!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000464986525697226!GO:0005975;carbohydrate metabolic process;0.000465558707901603!GO:0005694;chromosome;0.000468649137492754!GO:0012502;induction of programmed cell death;0.000547524202479156!GO:0007041;lysosomal transport;0.000575009783408622!GO:0015980;energy derivation by oxidation of organic compounds;0.000597053936059918!GO:0035257;nuclear hormone receptor binding;0.000628474917144715!GO:0016563;transcription activator activity;0.000630843536138204!GO:0003924;GTPase activity;0.000635566501267125!GO:0030384;phosphoinositide metabolic process;0.000642398189168981!GO:0030027;lamellipodium;0.000655531117235872!GO:0016072;rRNA metabolic process;0.000667520914546221!GO:0005741;mitochondrial outer membrane;0.000667761154290175!GO:0006364;rRNA processing;0.000674086334152399!GO:0008632;apoptotic program;0.00070405150489108!GO:0048522;positive regulation of cellular process;0.000706056056464876!GO:0045454;cell redox homeostasis;0.000718801887345127!GO:0030149;sphingolipid catabolic process;0.000761222799554571!GO:0006402;mRNA catabolic process;0.000776395751851825!GO:0019867;outer membrane;0.000808622038908475!GO:0003714;transcription corepressor activity;0.000826713423681637!GO:0019222;regulation of metabolic process;0.000831353838853602!GO:0002376;immune system process;0.000839419524083539!GO:0003729;mRNA binding;0.000856398811410585!GO:0046489;phosphoinositide biosynthetic process;0.000932473421433346!GO:0005099;Ras GTPase activator activity;0.00103890743456057!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00106039979415583!GO:0032318;regulation of Ras GTPase activity;0.00107094673390073!GO:0016853;isomerase activity;0.00108134631693771!GO:0031968;organelle outer membrane;0.00112115764110212!GO:0005813;centrosome;0.00117645490468839!GO:0006260;DNA replication;0.00124031383331402!GO:0019377;glycolipid catabolic process;0.00128691884454666!GO:0033116;ER-Golgi intermediate compartment membrane;0.00141168929050504!GO:0008186;RNA-dependent ATPase activity;0.0014246429104866!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0014868847120643!GO:0005762;mitochondrial large ribosomal subunit;0.00170509679031017!GO:0000315;organellar large ribosomal subunit;0.00170509679031017!GO:0043021;ribonucleoprotein binding;0.00192452565216268!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00196114830677904!GO:0031324;negative regulation of cellular metabolic process;0.0019794755043003!GO:0003690;double-stranded DNA binding;0.00205977947289155!GO:0006897;endocytosis;0.00208525539584683!GO:0010324;membrane invagination;0.00208525539584683!GO:0006767;water-soluble vitamin metabolic process;0.0021214177581086!GO:0065007;biological regulation;0.0021303021975901!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0021303021975901!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0021303021975901!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0021303021975901!GO:0006644;phospholipid metabolic process;0.00213072869295661!GO:0044427;chromosomal part;0.00215723445341293!GO:0006891;intra-Golgi vesicle-mediated transport;0.00223418762890231!GO:0005788;endoplasmic reticulum lumen;0.00223418762890231!GO:0030041;actin filament polymerization;0.00228557639342174!GO:0044255;cellular lipid metabolic process;0.00228915040143498!GO:0030176;integral to endoplasmic reticulum membrane;0.00249711192488919!GO:0006333;chromatin assembly or disassembly;0.00290640341474383!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00291600682281169!GO:0006310;DNA recombination;0.00307987951298872!GO:0006607;NLS-bearing substrate import into nucleus;0.00323661182300393!GO:0048518;positive regulation of biological process;0.00329350657473701!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00334198602183598!GO:0008610;lipid biosynthetic process;0.00338632649624718!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00341237689414719!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00366272098017087!GO:0005815;microtubule organizing center;0.00370503854070903!GO:0048471;perinuclear region of cytoplasm;0.00374521224379643!GO:0004197;cysteine-type endopeptidase activity;0.00377590917167866!GO:0065004;protein-DNA complex assembly;0.00378865512130469!GO:0004004;ATP-dependent RNA helicase activity;0.00382803442336475!GO:0051789;response to protein stimulus;0.00401865388981823!GO:0006986;response to unfolded protein;0.00401865388981823!GO:0046479;glycosphingolipid catabolic process;0.00430854479027356!GO:0019843;rRNA binding;0.00431455828755122!GO:0030518;steroid hormone receptor signaling pathway;0.00459792037356944!GO:0030867;rough endoplasmic reticulum membrane;0.00470222814027536!GO:0006665;sphingolipid metabolic process;0.00514813053943235!GO:0046822;regulation of nucleocytoplasmic transport;0.0051982961344984!GO:0016363;nuclear matrix;0.0052561468543922!GO:0003725;double-stranded RNA binding;0.00528231446205336!GO:0009966;regulation of signal transduction;0.00555473428446644!GO:0015036;disulfide oxidoreductase activity;0.00556193626640358!GO:0000118;histone deacetylase complex;0.00558260623868019!GO:0030133;transport vesicle;0.0056130716822317!GO:0048500;signal recognition particle;0.00565553777393708!GO:0030036;actin cytoskeleton organization and biogenesis;0.00568391739606465!GO:0030118;clathrin coat;0.00594599227348405!GO:0051252;regulation of RNA metabolic process;0.00639980127989463!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00642452075364815!GO:0004177;aminopeptidase activity;0.00652976278694983!GO:0000287;magnesium ion binding;0.0067393023487819!GO:0000096;sulfur amino acid metabolic process;0.00689078494324473!GO:0009892;negative regulation of metabolic process;0.00718004677566517!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0074260404584553!GO:0015002;heme-copper terminal oxidase activity;0.0074260404584553!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0074260404584553!GO:0004129;cytochrome-c oxidase activity;0.0074260404584553!GO:0000314;organellar small ribosomal subunit;0.00751863609933239!GO:0005763;mitochondrial small ribosomal subunit;0.00751863609933239!GO:0006383;transcription from RNA polymerase III promoter;0.00751863609933239!GO:0043488;regulation of mRNA stability;0.00751936211921176!GO:0043487;regulation of RNA stability;0.00751936211921176!GO:0031072;heat shock protein binding;0.00776568769022031!GO:0001887;selenium metabolic process;0.0077921226758918!GO:0030134;ER to Golgi transport vesicle;0.00796851337724567!GO:0030658;transport vesicle membrane;0.00842079453777404!GO:0015923;mannosidase activity;0.00869926258696154!GO:0048002;antigen processing and presentation of peptide antigen;0.00880672129083928!GO:0000785;chromatin;0.00896338974255101!GO:0051235;maintenance of localization;0.00901769097599998!GO:0031625;ubiquitin protein ligase binding;0.00905255781989286!GO:0043681;protein import into mitochondrion;0.00909380855766298!GO:0019752;carboxylic acid metabolic process;0.00920869606822746!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00923238789798817!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00923895547169187!GO:0005048;signal sequence binding;0.00928391533163444!GO:0048487;beta-tubulin binding;0.00940044155746063!GO:0030663;COPI coated vesicle membrane;0.00945349032511749!GO:0030126;COPI vesicle coat;0.00945349032511749!GO:0006611;protein export from nucleus;0.00965983702862662!GO:0046466;membrane lipid catabolic process;0.00965983702862662!GO:0004185;serine carboxypeptidase activity;0.00979895009287314!GO:0046483;heterocycle metabolic process;0.00986942573718791!GO:0006082;organic acid metabolic process;0.0100615779497581!GO:0007006;mitochondrial membrane organization and biogenesis;0.0102396349309305!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0103306648103028!GO:0050749;apolipoprotein E receptor binding;0.0103306648103028!GO:0004674;protein serine/threonine kinase activity;0.0104920273785341!GO:0019318;hexose metabolic process;0.0105719790594363!GO:0005667;transcription factor complex;0.0105763595925093!GO:0016481;negative regulation of transcription;0.0105955819431416!GO:0006769;nicotinamide metabolic process;0.0106077365513052!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0106400364044534!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0107320442754565!GO:0045047;protein targeting to ER;0.0107320442754565!GO:0042158;lipoprotein biosynthetic process;0.0107365009682612!GO:0006497;protein amino acid lipidation;0.010796781907616!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0108009851208041!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0108009851208041!GO:0022415;viral reproductive process;0.0108102831014301!GO:0006955;immune response;0.0109887324335667!GO:0006733;oxidoreduction coenzyme metabolic process;0.011517395851094!GO:0006914;autophagy;0.0115720737139271!GO:0030127;COPII vesicle coat;0.0117862789320887!GO:0012507;ER to Golgi transport vesicle membrane;0.0117862789320887!GO:0006516;glycoprotein catabolic process;0.0118711130274801!GO:0000278;mitotic cell cycle;0.0120189087061835!GO:0050662;coenzyme binding;0.0122246166463644!GO:0005791;rough endoplasmic reticulum;0.0122278724273975!GO:0006689;ganglioside catabolic process;0.0128044030626523!GO:0031901;early endosome membrane;0.0130620178318639!GO:0042802;identical protein binding;0.0131296435734107!GO:0035035;histone acetyltransferase binding;0.013455271168484!GO:0005996;monosaccharide metabolic process;0.0137201217725558!GO:0030984;kininogen binding;0.0140633947721032!GO:0004213;cathepsin B activity;0.0140633947721032!GO:0006740;NADPH regeneration;0.0141086787141862!GO:0006098;pentose-phosphate shunt;0.0141086787141862!GO:0006302;double-strand break repair;0.0142793307318306!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0146274710004301!GO:0019362;pyridine nucleotide metabolic process;0.014714260111229!GO:0004563;beta-N-acetylhexosaminidase activity;0.0149495615836785!GO:0030137;COPI-coated vesicle;0.0150211553572295!GO:0031323;regulation of cellular metabolic process;0.0150440143263708!GO:0022406;membrane docking;0.0152393307693627!GO:0048278;vesicle docking;0.0152393307693627!GO:0001816;cytokine production;0.0152974780930217!GO:0016859;cis-trans isomerase activity;0.016124472138279!GO:0060090;molecular adaptor activity;0.0164360949222426!GO:0051087;chaperone binding;0.016509924706823!GO:0051920;peroxiredoxin activity;0.0167338626929482!GO:0015631;tubulin binding;0.0167338626929482!GO:0006368;RNA elongation from RNA polymerase II promoter;0.017044538306163!GO:0003711;transcription elongation regulator activity;0.0175431760259354!GO:0044438;microbody part;0.0177875113358167!GO:0044439;peroxisomal part;0.0177875113358167!GO:0008312;7S RNA binding;0.0179572682050907!GO:0016798;hydrolase activity, acting on glycosyl bonds;0.0183347485782135!GO:0006405;RNA export from nucleus;0.0184596148249711!GO:0005637;nuclear inner membrane;0.0186530312134251!GO:0051090;regulation of transcription factor activity;0.018827965736796!GO:0005869;dynactin complex;0.018827965736796!GO:0035258;steroid hormone receptor binding;0.0188509031616378!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0188509031616378!GO:0051539;4 iron, 4 sulfur cluster binding;0.0189740822761342!GO:0003899;DNA-directed RNA polymerase activity;0.0191670102550638!GO:0030660;Golgi-associated vesicle membrane;0.0191826799662873!GO:0051098;regulation of binding;0.0191893360130298!GO:0030029;actin filament-based process;0.019226499664038!GO:0006414;translational elongation;0.0194959567810085!GO:0030119;AP-type membrane coat adaptor complex;0.0196281872933935!GO:0016251;general RNA polymerase II transcription factor activity;0.0196412596705426!GO:0004518;nuclease activity;0.0197610752678957!GO:0000059;protein import into nucleus, docking;0.0198072431504448!GO:0017166;vinculin binding;0.0202352237701477!GO:0006904;vesicle docking during exocytosis;0.0204403344396524!GO:0009607;response to biotic stimulus;0.0205548417714313!GO:0016584;nucleosome positioning;0.0207121484581225!GO:0006352;transcription initiation;0.0211907338167797!GO:0005905;coated pit;0.0214973090712294!GO:0006661;phosphatidylinositol biosynthetic process;0.0215947361365117!GO:0047485;protein N-terminus binding;0.0222278380073077!GO:0000209;protein polyubiquitination;0.0222681222056657!GO:0045185;maintenance of protein localization;0.0223453356950831!GO:0030522;intracellular receptor-mediated signaling pathway;0.0223737777038335!GO:0030521;androgen receptor signaling pathway;0.0225372201318077!GO:0051219;phosphoprotein binding;0.0227007121775334!GO:0005684;U2-dependent spliceosome;0.0229459245071124!GO:0030131;clathrin adaptor complex;0.0229569024309211!GO:0006509;membrane protein ectodomain proteolysis;0.0231944797186393!GO:0033619;membrane protein proteolysis;0.0231944797186393!GO:0006778;porphyrin metabolic process;0.0238931221422893!GO:0033013;tetrapyrrole metabolic process;0.0238931221422893!GO:0051287;NAD binding;0.0238931221422893!GO:0042168;heme metabolic process;0.0242110128560643!GO:0033033;negative regulation of myeloid cell apoptosis;0.0245475287505048!GO:0001803;regulation of type III hypersensitivity;0.0245475287505048!GO:0032733;positive regulation of interleukin-10 production;0.0245475287505048!GO:0033025;regulation of mast cell apoptosis;0.0245475287505048!GO:0001805;positive regulation of type III hypersensitivity;0.0245475287505048!GO:0033023;mast cell homeostasis;0.0245475287505048!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0245475287505048!GO:0033032;regulation of myeloid cell apoptosis;0.0245475287505048!GO:0001802;type III hypersensitivity;0.0245475287505048!GO:0033028;myeloid cell apoptosis;0.0245475287505048!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0245475287505048!GO:0033026;negative regulation of mast cell apoptosis;0.0245475287505048!GO:0033024;mast cell apoptosis;0.0245475287505048!GO:0016408;C-acyltransferase activity;0.0247802715850482!GO:0045309;protein phosphorylated amino acid binding;0.0250431033256244!GO:0030880;RNA polymerase complex;0.0254573823358609!GO:0004576;oligosaccharyl transferase activity;0.0254884977690195!GO:0031903;microbody membrane;0.0261789558211062!GO:0005778;peroxisomal membrane;0.0261789558211062!GO:0019904;protein domain specific binding;0.026187029911602!GO:0006354;RNA elongation;0.026272780849753!GO:0008250;oligosaccharyl transferase complex;0.0263080952907642!GO:0004218;cathepsin S activity;0.0265500266623687!GO:0008139;nuclear localization sequence binding;0.0266510140495186!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0266510140495186!GO:0006749;glutathione metabolic process;0.0266521142068149!GO:0004559;alpha-mannosidase activity;0.026719370078836!GO:0006118;electron transport;0.0272562766163808!GO:0030132;clathrin coat of coated pit;0.0272691871177365!GO:0006506;GPI anchor biosynthetic process;0.0274499605282439!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0276788763996098!GO:0046578;regulation of Ras protein signal transduction;0.0279938402229092!GO:0045637;regulation of myeloid cell differentiation;0.0280646423531514!GO:0006629;lipid metabolic process;0.0281698910926063!GO:0004192;cathepsin D activity;0.0284419196760334!GO:0051223;regulation of protein transport;0.0284419196760334!GO:0030503;regulation of cell redox homeostasis;0.0286723099800839!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0289868893778785!GO:0006013;mannose metabolic process;0.0293868007469534!GO:0046966;thyroid hormone receptor binding;0.0295742260352468!GO:0016860;intramolecular oxidoreductase activity;0.0296784795692714!GO:0046914;transition metal ion binding;0.0300367808183022!GO:0051452;cellular pH reduction;0.030134766392561!GO:0051453;regulation of cellular pH;0.030134766392561!GO:0045851;pH reduction;0.030134766392561!GO:0032507;maintenance of cellular protein localization;0.030134766392561!GO:0006739;NADP metabolic process;0.0302045488776496!GO:0050811;GABA receptor binding;0.0302101805840191!GO:0012506;vesicle membrane;0.0302101805840191!GO:0051540;metal cluster binding;0.0302101805840191!GO:0051536;iron-sulfur cluster binding;0.0302101805840191!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0302101805840191!GO:0010257;NADH dehydrogenase complex assembly;0.0302101805840191!GO:0033108;mitochondrial respiratory chain complex assembly;0.0302101805840191!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.030489042673561!GO:0042613;MHC class II protein complex;0.0310934262815962!GO:0008287;protein serine/threonine phosphatase complex;0.0315521331223703!GO:0019747;regulation of isoprenoid metabolic process;0.0318161476532517!GO:0006626;protein targeting to mitochondrion;0.0319577577567642!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0319577577567642!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0319577577567642!GO:0006487;protein amino acid N-linked glycosylation;0.032576653626343!GO:0000339;RNA cap binding;0.0327061734328485!GO:0018193;peptidyl-amino acid modification;0.034099985887254!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0341014244412362!GO:0006979;response to oxidative stress;0.0342090249918218!GO:0007050;cell cycle arrest;0.0348239261493493!GO:0004553;hydrolase activity, hydrolyzing O-glycosyl compounds;0.0360566156325317!GO:0000303;response to superoxide;0.0361969256424361!GO:0016301;kinase activity;0.0361969256424361!GO:0008154;actin polymerization and/or depolymerization;0.0370213476378919!GO:0005777;peroxisome;0.0371635929113473!GO:0042579;microbody;0.0371635929113473!GO:0006376;mRNA splice site selection;0.0374114166904286!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0374114166904286!GO:0031301;integral to organelle membrane;0.0379406601486695!GO:0006505;GPI anchor metabolic process;0.0379406601486695!GO:0006622;protein targeting to lysosome;0.0382764455899036!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0393136201330973!GO:0006595;polyamine metabolic process;0.0393395178383983!GO:0005784;translocon complex;0.0394359924482248!GO:0001784;phosphotyrosine binding;0.0400557662981229!GO:0008637;apoptotic mitochondrial changes;0.0402677529877717!GO:0016741;transferase activity, transferring one-carbon groups;0.040794492001549!GO:0051059;NF-kappaB binding;0.0410107217314161!GO:0030145;manganese ion binding;0.0415624652183857!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0424357294400775!GO:0002250;adaptive immune response;0.0424904318932633!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0424904318932633!GO:0051020;GTPase binding;0.0425899365564839!GO:0051092;activation of NF-kappaB transcription factor;0.0434683365631852!GO:0045947;negative regulation of translational initiation;0.0434683365631852!GO:0008168;methyltransferase activity;0.043992194453353!GO:0006007;glucose catabolic process;0.044132915721404!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0442879928428083!GO:0000428;DNA-directed RNA polymerase complex;0.0442879928428083!GO:0004942;anaphylatoxin receptor activity;0.0442879928428083!GO:0001573;ganglioside metabolic process;0.0447558437761274!GO:0048468;cell development;0.0452283160822114!GO:0002440;production of molecular mediator of immune response;0.0452888629502503!GO:0051881;regulation of mitochondrial membrane potential;0.0455663664756509!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0458790003390826!GO:0005057;receptor signaling protein activity;0.0458790003390826!GO:0045351;interferon type I biosynthetic process;0.0458790003390826!GO:0032606;interferon type I production;0.0458790003390826!GO:0016605;PML body;0.0461436380613937!GO:0016581;NuRD complex;0.046676056611043!GO:0045920;negative regulation of exocytosis;0.0467527360553508!GO:0043301;negative regulation of leukocyte degranulation;0.0467527360553508!GO:0043305;negative regulation of mast cell degranulation;0.0467527360553508!GO:0042157;lipoprotein metabolic process;0.0473244382270068!GO:0003817;complement factor D activity;0.0476703870506843!GO:0032763;regulation of mast cell cytokine production;0.0476821790660566!GO:0032762;mast cell cytokine production;0.0476821790660566!GO:0005484;SNAP receptor activity;0.0477177028020314!GO:0046488;phosphatidylinositol metabolic process;0.0484946467374694!GO:0006458;'de novo' protein folding;0.0485555083856086!GO:0051084;'de novo' posttranslational protein folding;0.0485555083856086!GO:0006026;aminoglycan catabolic process;0.0485555083856086!GO:0006027;glycosaminoglycan catabolic process;0.0485555083856086!GO:0004448;isocitrate dehydrogenase activity;0.0489753247011624!GO:0045892;negative regulation of transcription, DNA-dependent;0.049768675296271!GO:0030258;lipid modification;0.049768675296271
|sample_id=11229
|sample_id=11229
|sample_note=former endothelial progenitor cells
|sample_note=former endothelial progenitor cells
Line 76: Line 106:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=SREBF1,2:3.62664998202;TLX2:2.63845115602;IKZF2:1.80822443956;IRF7:1.49493765927;SPIB:1.34146275389;RXRA_VDR{dimer}:1.33999112211;DMAP1_NCOR{1,2}_SMARC:1.33995057468;STAT1,3:1.3225228957;IRF1,2:1.26467608326;FOXD3:1.23352413094;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19190909907;EN1,2:1.13880905642;SPI1:1.10479248321;MAFB:1.07544798599;ELF1,2,4:1.04828508254;NFE2L2:0.98627985725;T:0.954614460077;ETS1,2:0.915694239069;AR:0.900631924617;TGIF1:0.823899207143;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.780592669127;ARID5B:0.744185791485;EBF1:0.741591944816;RORA:0.735456703369;FOXO1,3,4:0.72334602232;FOX{D1,D2}:0.719425530177;NKX2-2,8:0.695935132305;HNF4A_NR2F1,2:0.677442067794;NFIL3:0.65055956291;FOXP1:0.640719297282;ESR1:0.594253620522;CUX2:0.563438281705;NFIX:0.552466081264;NANOG{mouse}:0.524123636974;HBP1_HMGB_SSRP1_UBTF:0.507957191269;FOX{F1,F2,J1}:0.476185700371;TFCP2:0.475485077926;CDX1,2,4:0.465066273607;FOXA2:0.450099984349;ESRRA:0.408635100174;RUNX1..3:0.394953609026;STAT2,4,6:0.386397601208;PAX2:0.368271781635;PAX1,9:0.36102969369;CEBPA,B_DDIT3:0.354867951841;POU5F1:0.348139871812;NR6A1:0.332360069992;NKX3-2:0.332102625353;FOXN1:0.323748684072;RXR{A,B,G}:0.276049624534;OCT4_SOX2{dimer}:0.261464308324;SMAD1..7,9:0.236878670386;PRDM1:0.216963154143;ZBTB16:0.208605187624;AIRE:0.181075360772;DBP:0.136708091794;MYOD1:0.128180790585;MYFfamily:0.124601636686;TFAP4:0.121633561369;NHLH1,2:0.109560229302;EP300:0.104514127318;PRRX1,2:0.0959212080138;HAND1,2:0.0782747624863;NKX2-3_NKX2-5:0.0751886509066;GATA4:0.047010699774;TAL1_TCF{3,4,12}:0.0461538238837;BPTF:0.0456724769268;ELK1,4_GABP{A,B1}:0.0445900664717;YY1:0.0349885841784;SPZ1:0.0314482675596;ZNF143:0.0244866197944;GATA6:0.0146651979958;HMX1:0.0114361467324;NKX6-1,2:-0.00943115084842;PAX8:-0.0242999143548;MYB:-0.0421497584356;PDX1:-0.0551889265185;NFE2:-0.0825412049339;HMGA1,2:-0.0880210946231;MTF1:-0.0898056654225;FOXP3:-0.105452195755;LHX3,4:-0.106353617434;NFKB1_REL_RELA:-0.119270492265;RFX2..5_RFXANK_RFXAP:-0.133667561665;NRF1:-0.143632686246;PAX4:-0.158692877472;HLF:-0.160102055767;PITX1..3:-0.166865431245;PAX6:-0.17969862985;ALX1:-0.181198100735;VSX1,2:-0.192441129494;RBPJ:-0.286033081924;NR5A1,2:-0.293625011541;SP1:-0.299117058893;HOX{A4,D4}:-0.335194071508;NANOG:-0.335549848989;FOX{I1,J2}:-0.339668755671;KLF4:-0.340215680182;ZNF238:-0.355227364702;LMO2:-0.369327824926;FOSL2:-0.374159515429;BREu{core}:-0.379766326457;HSF1,2:-0.397711176791;HNF1A:-0.399676059175;ZFP161:-0.399702074721;HES1:-0.409512922689;TFAP2{A,C}:-0.422614699924;TOPORS:-0.434006029315;PPARG:-0.434848068977;GLI1..3:-0.443694718058;STAT5{A,B}:-0.477780903831;ADNP_IRX_SIX_ZHX:-0.48603761271;ATF5_CREB3:-0.499289592368;CRX:-0.5033163815;ZNF148:-0.513791104168;REST:-0.520686252344;SOX{8,9,10}:-0.525741372738;FOS_FOS{B,L1}_JUN{B,D}:-0.534052438825;ATF4:-0.535140223396;MZF1:-0.54386756363;MAZ:-0.548841619412;XBP1:-0.55020210265;EVI1:-0.552657639023;bHLH_family:-0.553699235671;MED-1{core}:-0.568105494392;ZEB1:-0.572179653138;AHR_ARNT_ARNT2:-0.572768907718;FOXQ1:-0.580631460718;SOX2:-0.590071883661;SOX5:-0.593973347521;XCPE1{core}:-0.607108258635;POU1F1:-0.60884828883;ATF2:-0.631096304855;IKZF1:-0.66114160299;PAX3,7:-0.6745665663;BACH2:-0.677697634419;GTF2I:-0.678142784305;GZF1:-0.69850802456;EGR1..3:-0.699341525068;ZBTB6:-0.713369144182;PATZ1:-0.71852277169;TLX1..3_NFIC{dimer}:-0.730174716867;NFATC1..3:-0.739490387735;SNAI1..3:-0.769861326686;HOX{A5,B5}:-0.769862549025;GTF2A1,2:-0.77808770364;CREB1:-0.785146873958;E2F1..5:-0.799058647919;ALX4:-0.824012165404;FOXM1:-0.833357751852;GFI1:-0.839368525144;NR3C1:-0.840155681451;MTE{core}:-0.847176250316;PAX5:-0.847538584384;MYBL2:-0.84955631843;GCM1,2:-0.869589529182;MEF2{A,B,C,D}:-0.871197674039;HOX{A6,A7,B6,B7}:-0.874283933659;POU2F1..3:-0.876103830998;ZNF423:-0.887305944959;HIF1A:-0.888352738991;UFEwm:-0.932997569931;GFI1B:-0.934509781892;NFY{A,B,C}:-0.950121181355;SOX17:-0.953353413151;POU3F1..4:-0.969207363401;RREB1:-0.969597413393;NKX3-1:-0.976617060971;NFE2L1:-1.00487076187;TFAP2B:-1.01349573428;CDC5L:-1.06857996018;HIC1:-1.06955128421;TEF:-1.07733959084;TP53:-1.1090317085;HOXA9_MEIS1:-1.11882178837;NR1H4:-1.12122489168;TEAD1:-1.14900859196;TFDP1:-1.15853500034;TBP:-1.17166106823;LEF1_TCF7_TCF7L1,2:-1.17875124385;ATF6:-1.19830111713;PBX1:-1.25472683281;RFX1:-1.42960906133;ZNF384:-1.45042489487;POU6F1:-1.46354176342;FOXL1:-1.52289049587;SRF:-1.54479629274;ZIC1..3:-1.65297328784;NKX2-1,4:-1.68689145243;JUN:-1.82001671659;TBX4,5:-1.92565556022;ONECUT1,2:-1.97415036441
|top_motifs=SREBF1,2:3.62664998202;TLX2:2.63845115602;IKZF2:1.80822443956;IRF7:1.49493765927;SPIB:1.34146275389;RXRA_VDR{dimer}:1.33999112211;DMAP1_NCOR{1,2}_SMARC:1.33995057468;STAT1,3:1.3225228957;IRF1,2:1.26467608326;FOXD3:1.23352413094;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19190909907;EN1,2:1.13880905642;SPI1:1.10479248321;MAFB:1.07544798599;ELF1,2,4:1.04828508254;NFE2L2:0.98627985725;T:0.954614460077;ETS1,2:0.915694239069;AR:0.900631924617;TGIF1:0.823899207143;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.780592669127;ARID5B:0.744185791485;EBF1:0.741591944816;RORA:0.735456703369;FOXO1,3,4:0.72334602232;FOX{D1,D2}:0.719425530177;NKX2-2,8:0.695935132305;HNF4A_NR2F1,2:0.677442067794;NFIL3:0.65055956291;FOXP1:0.640719297282;ESR1:0.594253620522;CUX2:0.563438281705;NFIX:0.552466081264;NANOG{mouse}:0.524123636974;HBP1_HMGB_SSRP1_UBTF:0.507957191269;FOX{F1,F2,J1}:0.476185700371;TFCP2:0.475485077926;CDX1,2,4:0.465066273607;FOXA2:0.450099984349;ESRRA:0.408635100174;RUNX1..3:0.394953609026;STAT2,4,6:0.386397601208;PAX2:0.368271781635;PAX1,9:0.36102969369;CEBPA,B_DDIT3:0.354867951841;POU5F1:0.348139871812;NR6A1:0.332360069992;NKX3-2:0.332102625353;FOXN1:0.323748684072;RXR{A,B,G}:0.276049624534;OCT4_SOX2{dimer}:0.261464308324;SMAD1..7,9:0.236878670386;PRDM1:0.216963154143;ZBTB16:0.208605187624;AIRE:0.181075360772;DBP:0.136708091794;MYOD1:0.128180790585;MYFfamily:0.124601636686;TFAP4:0.121633561369;NHLH1,2:0.109560229302;EP300:0.104514127318;PRRX1,2:0.0959212080138;HAND1,2:0.0782747624863;NKX2-3_NKX2-5:0.0751886509066;GATA4:0.047010699774;TAL1_TCF{3,4,12}:0.0461538238837;BPTF:0.0456724769268;ELK1,4_GABP{A,B1}:0.0445900664717;YY1:0.0349885841784;SPZ1:0.0314482675596;ZNF143:0.0244866197944;GATA6:0.0146651979958;HMX1:0.0114361467324;NKX6-1,2:-0.00943115084842;PAX8:-0.0242999143548;MYB:-0.0421497584356;PDX1:-0.0551889265185;NFE2:-0.0825412049339;HMGA1,2:-0.0880210946231;MTF1:-0.0898056654225;FOXP3:-0.105452195755;LHX3,4:-0.106353617434;NFKB1_REL_RELA:-0.119270492265;RFX2..5_RFXANK_RFXAP:-0.133667561665;NRF1:-0.143632686246;PAX4:-0.158692877472;HLF:-0.160102055767;PITX1..3:-0.166865431245;PAX6:-0.17969862985;ALX1:-0.181198100735;VSX1,2:-0.192441129494;RBPJ:-0.286033081924;NR5A1,2:-0.293625011541;SP1:-0.299117058893;HOX{A4,D4}:-0.335194071508;NANOG:-0.335549848989;FOX{I1,J2}:-0.339668755671;KLF4:-0.340215680182;ZNF238:-0.355227364702;LMO2:-0.369327824926;FOSL2:-0.374159515429;BREu{core}:-0.379766326457;HSF1,2:-0.397711176791;HNF1A:-0.399676059175;ZFP161:-0.399702074721;HES1:-0.409512922689;TFAP2{A,C}:-0.422614699924;TOPORS:-0.434006029315;PPARG:-0.434848068977;GLI1..3:-0.443694718058;STAT5{A,B}:-0.477780903831;ADNP_IRX_SIX_ZHX:-0.48603761271;ATF5_CREB3:-0.499289592368;CRX:-0.5033163815;ZNF148:-0.513791104168;REST:-0.520686252344;SOX{8,9,10}:-0.525741372738;FOS_FOS{B,L1}_JUN{B,D}:-0.534052438825;ATF4:-0.535140223396;MZF1:-0.54386756363;MAZ:-0.548841619412;XBP1:-0.55020210265;EVI1:-0.552657639023;bHLH_family:-0.553699235671;MED-1{core}:-0.568105494392;ZEB1:-0.572179653138;AHR_ARNT_ARNT2:-0.572768907718;FOXQ1:-0.580631460718;SOX2:-0.590071883661;SOX5:-0.593973347521;XCPE1{core}:-0.607108258635;POU1F1:-0.60884828883;ATF2:-0.631096304855;IKZF1:-0.66114160299;PAX3,7:-0.6745665663;BACH2:-0.677697634419;GTF2I:-0.678142784305;GZF1:-0.69850802456;EGR1..3:-0.699341525068;ZBTB6:-0.713369144182;PATZ1:-0.71852277169;TLX1..3_NFIC{dimer}:-0.730174716867;NFATC1..3:-0.739490387735;SNAI1..3:-0.769861326686;HOX{A5,B5}:-0.769862549025;GTF2A1,2:-0.77808770364;CREB1:-0.785146873958;E2F1..5:-0.799058647919;ALX4:-0.824012165404;FOXM1:-0.833357751852;GFI1:-0.839368525144;NR3C1:-0.840155681451;MTE{core}:-0.847176250316;PAX5:-0.847538584384;MYBL2:-0.84955631843;GCM1,2:-0.869589529182;MEF2{A,B,C,D}:-0.871197674039;HOX{A6,A7,B6,B7}:-0.874283933659;POU2F1..3:-0.876103830998;ZNF423:-0.887305944959;HIF1A:-0.888352738991;UFEwm:-0.932997569931;GFI1B:-0.934509781892;NFY{A,B,C}:-0.950121181355;SOX17:-0.953353413151;POU3F1..4:-0.969207363401;RREB1:-0.969597413393;NKX3-1:-0.976617060971;NFE2L1:-1.00487076187;TFAP2B:-1.01349573428;CDC5L:-1.06857996018;HIC1:-1.06955128421;TEF:-1.07733959084;TP53:-1.1090317085;HOXA9_MEIS1:-1.11882178837;NR1H4:-1.12122489168;TEAD1:-1.14900859196;TFDP1:-1.15853500034;TBP:-1.17166106823;LEF1_TCF7_TCF7L1,2:-1.17875124385;ATF6:-1.19830111713;PBX1:-1.25472683281;RFX1:-1.42960906133;ZNF384:-1.45042489487;POU6F1:-1.46354176342;FOXL1:-1.52289049587;SRF:-1.54479629274;ZIC1..3:-1.65297328784;NKX2-1,4:-1.68689145243;JUN:-1.82001671659;TBX4,5:-1.92565556022;ONECUT1,2:-1.97415036441
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11229-116C5;search_select_hide=table117:FF:11229-116C5
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:CD14+ monocyte derived endothelial progenitor cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10858
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage65 years old adult
sexmale
age65
cell typeblood vessel endothelial progenitor cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberEPC722
catalog number3H100-81-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005343
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10858 CAGE DRX008129 DRR009001
Accession ID Hg19

Library idBAMCTSS
CNhs10858 DRZ000426 DRZ001811
Accession ID Hg38

Library idBAMCTSS
CNhs10858 DRZ011776 DRZ013161
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10041downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005343
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.TGACCA sRNA-Seq DRX037147 DRR041513
Accession ID Hg19

Library idBAMCTSS
SRhi10010.TGACCA DRZ007155


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
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C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10858

Jaspar motifP-value
MA0002.29.86877e-5
MA0003.10.091
MA0004.10.116
MA0006.10.702
MA0007.10.0673
MA0009.10.21
MA0014.10.551
MA0017.15.89875e-4
MA0018.22.4191e-4
MA0019.10.479
MA0024.10.00873
MA0025.10.6
MA0027.10.716
MA0028.10.3
MA0029.10.948
MA0030.10.4
MA0031.10.578
MA0035.20.676
MA0038.10.115
MA0039.20.497
MA0040.10.915
MA0041.10.353
MA0042.10.685
MA0043.10.00582
MA0046.10.305
MA0047.20.0781
MA0048.10.294
MA0050.15.43716e-9
MA0051.19.90974e-4
MA0052.10.045
MA0055.10.459
MA0057.10.749
MA0058.10.00499
MA0059.10.548
MA0060.15.01677e-7
MA0061.10.23
MA0062.22.37009e-4
MA0065.20.00446
MA0066.10.151
MA0067.10.151
MA0068.10.483
MA0069.10.8
MA0070.10.153
MA0071.10.206
MA0072.10.758
MA0073.10.611
MA0074.10.152
MA0076.10.304
MA0077.10.342
MA0078.10.415
MA0079.20.287
MA0080.21.42555e-17
MA0081.11.57517e-4
MA0083.12.97472e-4
MA0084.10.295
MA0087.10.589
MA0088.10.141
MA0090.10.0122
MA0091.10.207
MA0092.10.847
MA0093.10.102
MA0099.20.0713
MA0100.10.987
MA0101.10.983
MA0102.20.00436
MA0103.10.684
MA0104.20.867
MA0105.10.0131
MA0106.10.502
MA0107.10.918
MA0108.29.0416e-11
MA0111.10.27
MA0112.24.5828e-4
MA0113.10.139
MA0114.10.00728
MA0115.10.341
MA0116.18.47177e-5
MA0117.10.933
MA0119.10.602
MA0122.10.425
MA0124.10.32
MA0125.10.625
MA0131.10.334
MA0135.10.51
MA0136.16.8603e-15
MA0137.20.0212
MA0138.20.847
MA0139.10.571
MA0140.10.989
MA0141.10.0277
MA0142.10.258
MA0143.10.105
MA0144.10.0339
MA0145.10.209
MA0146.10.0129
MA0147.10.678
MA0148.10.752
MA0149.10.189
MA0150.10.164
MA0152.10.571
MA0153.10.0781
MA0154.10.00166
MA0155.10.838
MA0156.11.79027e-9
MA0157.10.096
MA0159.10.0284
MA0160.10.0346
MA0162.10.737
MA0163.12.60298e-8
MA0164.10.849
MA0258.10.0036
MA0259.10.314



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10858

Novel motifP-value
10.25
100.0266
1000.917
1010.29
1020.976
1030.194
1040.937
1050.477
1060.14
1070.555
1080.943
1090.0442
110.0647
1100.217
1110.0437
1120.255
1130.996
1140.0867
1150.224
1160.755
1170.0129
1180.27
1190.101
120.399
1200.401
1210.766
1220.557
1230.129
1240.251
1250.293
1260.0866
1270.136
1280.121
1290.709
130.0604
1300.839
1310.449
1320.835
1330.871
1340.926
1350.0914
1360.891
1370.0142
1380.0552
1390.0231
140.144
1400.383
1410.684
1420.119
1430.517
1440.326
1450.455
1460.89
1470.432
1480.0113
1490.614
150.213
1500.47
1510.814
1520.473
1530.934
1540.92
1550.216
1560.937
1570.8
1580.913
1590.246
160.289
1600.496
1610.459
1620.731
1630.287
1640.158
1650.0854
1660.653
1670.76
1680.262
1690.0121
170.264
180.553
190.207
20.804
200.803
210.265
220.102
230.559
240.0198
250.593
260.0845
270.139
280.495
290.166
30.0103
300.789
310.385
320.707
330.474
340.273
350.286
360.126
370.132
380.12
390.876
40.899
400.17
410.266
420.287
430.0801
440.432
450.567
460.209
470.439
480.268
490.152
50.182
500.637
510.524
520.333
530.228
540.374
550.0146
560.66
570.539
580.119
590.112
60.387
600.0795
610.129
620.184
630.264
640.275
650.105
660.943
670.206
680.484
690.868
70.142
700.0234
710.0533
720.245
730.101
740.631
750.0247
760.17
770.168
780.092
790.565
80.125
800.232
810.226
820.0986
830.517
840.44
850.107
860.0217
870.106
880.234
890.347
90.321
900.0227
910.807
920.124
930.846
940.0842
950.399
960.25
970.797
980.411
990.607



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10858


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0000766 (myeloid leukocyte)
0002078 (meso-epithelial cell)
0000219 (motile cell)
0000215 (barrier cell)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000034 (stem cell)
0000576 (monocyte)
0000115 (endothelial cell)
0000566 (angioblastic mesenchymal cell)
0002619 (adult endothelial progenitor cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000248 (human endothelial progenitor cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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