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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008350
|DRA_sample_Accession=CAGE@SAMD00005420
|accession_numbers=CAGE;DRX008458;DRR009330;DRZ000755;DRZ002140
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005420
|accession_numbers=CAGE;DRX008458;DRR009330;DRZ000755;DRZ002140;DRZ012105;DRZ013490
|accession_numbers_RNASeq=sRNA-Seq;DRX037082;DRR041448;DRZ007090
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr8:25902876..25902936,-!p1@EBF2!1.94!85.51!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.60!104.63!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.59!38.24!HOXC5;;chr19:46801639..46801699,+!p1@HIF3A!1.56!34.91!HIF3A;;chr9:77112244..77112262,+!p1@RORB!1.51!34.80!RORB;;chr12:54378923..54378966,+!p1@HOXC10!1.46!28.14!HOXC10;;chr6:45296048..45296082,+!p1@RUNX2!1.45!31.04!RUNX2;;chr1:170632285..170632309,+!p1@PRRX1!1.40!27.18!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.39!39.21!TCF12;;chr7:15726296..15726315,-!p1@MEOX2!1.38!22.77!MEOX2;;chr6:85474299..85474324,-!p1@TBX18!1.37!39.85!TBX18;;chr1:170633348..170633399,+!p2@PRRX1!1.33!27.39!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.28!47.37!HMGA2;;chr7:15726243..15726293,-!p2@MEOX2!1.21!15.36!MEOX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.20!21.27!ZBTB16;;chr12:54393880..54393962,+!p1@HOXC9!1.17!13.75!HOXC9;;chr12:66218598..66218645,+!p2@HMGA2!1.16!61.87!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.16!50.70!SIX1;;chr8:49833948..49833973,-!p2@SNAI2!1.15!83.79!SNAI2;;chr11:46299199..46299233,+!p1@CREB3L1!1.14!65.53!CREB3L1;;chr21:47063625..47063658,+!p1@PCBP3!1.14!55.64!PCBP3;;chr12:54379029..54379057,+!p2@HOXC10!1.13!12.35!HOXC10;;chr7:27213893..27213954,-!p1@HOXA10!1.11!12.03!HOXA10;;chr9:16870659..16870675,-!p2@BNC2!1.10!14.29!BNC2;;chr7:27192185..27192209,-!p1@HOXA3!1.09!11.39!HOXA3;;chr5:158526917..158526932,-!p1@EBF1!1.08!27.82!EBF1;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.63!KDM5D;;chr15:42749722..42749739,-!p2@ZFP106!1.06!19.12!ZFP106;;chr2:176994408..176994492,+!p1@HOXD8!1.05!10.20!HOXD8;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.20!HOXA9;;chr3:157823517..157823562,-!p1@SHOX2!1.04!10.63!SHOX2;;chr18:22932080..22932170,-!p1@ZNF521!1.03!41.68!ZNF521;;chr8:49833978..49833996,-!p1@SNAI2!1.00!189.81!SNAI2;;chr1:158969752..158969780,+!p6@IFI16!1.00!15.90!IFI16;;chr7:27224842..27224872,-!p1@HOXA11!0.99!8.81!HOXA11;;chr8:93074803..93074845,-!p1@RUNX1T1!0.99!8.81!RUNX1T1;;chr12:66218212..66218244,+!p5@HMGA2!0.98!12.57!HMGA2;;chr12:54410948..54410992,+!p3@HOXC5!0.98!8.49!HOXC5;;chr18:53068911..53068935,-!p4@TCF4!0.97!9.56!TCF4;;chr15:57511589..57511608,+!p4@TCF12!0.97!8.38!TCF12;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.91!HIC1;;chr7:19157043..19157088,-!p2@TWIST1!0.96!21.05!TWIST1;;chr1:119530706..119530736,-!p3@TBX15!0.96!8.16!TBX15;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.36!HMGA2;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!33.94!ZFHX4;;chr2:208030647..208030689,-!p1@KLF7!0.93!65.53!KLF7;;chr2:166326200..166326216,+!p1@CSRNP3!0.93!11.17!CSRNP3;;chr19:45260775..45260838,+!p5@BCL3!0.93!9.99!BCL3;;chr2:214015111..214015179,-!p1@IKZF2!0.92!13.43!IKZF2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.92!7.95!GLIS1;;chr11:47279504..47279563,+!p1@NR1H3!0.91!16.54!NR1H3;;chr1:158979872..158979898,+!p3@IFI16!0.90!22.24!IFI16;;chr9:16870710..16870763,-!p1@BNC2!0.90!12.35!BNC2;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.53!NFIX;;chr3:25470156..25470227,+!p2@RARB!0.90!6.98!RARB;;chr1:170632250..170632277,+!p7@PRRX1!0.90!6.87!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.89!10.74!PITX1;;chr1:170633262..170633285,+!p3@PRRX1!0.88!7.52!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.88!6.66!HOXC5;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.98!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.86!6.23!BNC2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.85!6.12!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.02!ZFY;;chr7:27205106..27205134,-!p2@HOXA9!0.84!5.91!HOXA9;;chr10:63809013..63809041,+!p3@ARID5B!0.83!33.94!ARID5B;;chr12:54380404..54380433,+!p3@HOXC10!0.83!5.80!HOXC10;;chr1:119530493..119530572,-!p1@TBX15!0.83!5.80!TBX15;;chr4:174451370..174451387,-!p1@HAND2!0.83!5.80!HAND2;;chr11:113930291..113930339,+!p2@ZBTB16!0.82!9.45!ZBTB16;;chr2:102091566..102091581,-!p1@RFX8!0.81!5.48!RFX8;;chr8:93107451..93107468,-!p2@RUNX1T1!0.81!5.48!RUNX1T1;;chr5:158527104..158527135,-!p4@EBF1!0.80!5.26!EBF1;;chr7:27224795..27224840,-!p2@HOXA11!0.80!5.26!HOXA11;;chr8:116673894..116673913,-!p12@TRPS1!0.80!5.26!TRPS1;;chr2:214014959..214015006,-!p4@IKZF2!0.80!5.26!IKZF2;;chr1:119530857..119530884,-!p4@TBX15!0.80!5.26!TBX15;;chr5:124082322..124082364,-!p1@ZNF608!0.79!13.96!ZNF608;;chr5:158526459..158526481,-!p2@EBF1!0.79!7.09!EBF1;;chr14:62162258..62162269,+!p2@HIF1A!0.78!52.31!HIF1A;;chr1:61547894..61547968,+!p2@NFIA!0.78!15.90!NFIA;;chr12:24715376..24715432,-!p1@SOX5!0.78!6.55!SOX5;;chr11:113930401..113930422,+!p3@ZBTB16!0.78!5.05!ZBTB16;;chr12:54402745..54402788,+!p1@HOXC8!0.77!4.83!HOXC8;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.25!RUNX2;;chr3:12330560..12330579,+!p1@PPARG!0.76!5.59!PPARG;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.27!CREB3L1;;chr18:22932004..22932021,-!p2@ZNF521!0.75!4.62!ZNF521;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.57!HIF1A;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.69!TBX18;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.98!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.25!TWIST2;;chr1:158979851..1589798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|expression_enrichment_score=chr8:25902876..25902936,-!p1@EBF2!1.94!85.51!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.60!104.63!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.59!38.24!HOXC5;;chr19:46801639..46801699,+!p1@HIF3A!1.56!34.91!HIF3A;;chr9:77112244..77112262,+!p1@RORB!1.51!34.80!RORB;;chr12:54378923..54378966,+!p1@HOXC10!1.46!28.14!HOXC10;;chr6:45296048..45296082,+!p1@RUNX2!1.45!31.04!RUNX2;;chr1:170632285..170632309,+!p1@PRRX1!1.40!27.18!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.39!39.21!TCF12;;chr7:15726296..15726315,-!p1@MEOX2!1.38!22.77!MEOX2;;chr6:85474299..85474324,-!p1@TBX18!1.37!39.85!TBX18;;chr1:170633348..170633399,+!p2@PRRX1!1.33!27.39!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.28!47.37!HMGA2;;chr7:15726243..15726293,-!p2@MEOX2!1.21!15.36!MEOX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.20!21.27!ZBTB16;;chr12:54393880..54393962,+!p1@HOXC9!1.17!13.75!HOXC9;;chr12:66218598..66218645,+!p2@HMGA2!1.16!61.87!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.16!50.70!SIX1;;chr8:49833948..49833973,-!p2@SNAI2!1.15!83.79!SNAI2;;chr11:46299199..46299233,+!p1@CREB3L1!1.14!65.53!CREB3L1;;chr21:47063625..47063658,+!p1@PCBP3!1.14!55.64!PCBP3;;chr12:54379029..54379057,+!p2@HOXC10!1.13!12.35!HOXC10;;chr7:27213893..27213954,-!p1@HOXA10!1.11!12.03!HOXA10;;chr9:16870659..16870675,-!p2@BNC2!1.10!14.29!BNC2;;chr7:27192185..27192209,-!p1@HOXA3!1.09!11.39!HOXA3;;chr5:158526917..158526932,-!p1@EBF1!1.08!27.82!EBF1;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.63!KDM5D;;chr15:42749722..42749739,-!p2@ZFP106!1.06!19.12!ZFP106;;chr2:176994408..176994492,+!p1@HOXD8!1.05!10.20!HOXD8;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.20!HOXA9;;chr3:157823517..157823562,-!p1@SHOX2!1.04!10.63!SHOX2;;chr18:22932080..22932170,-!p1@ZNF521!1.03!41.68!ZNF521;;chr8:49833978..49833996,-!p1@SNAI2!1.00!189.81!SNAI2;;chr1:158969752..158969780,+!p6@IFI16!1.00!15.90!IFI16;;chr7:27224842..27224872,-!p1@HOXA11!0.99!8.81!HOXA11;;chr8:93074803..93074845,-!p1@RUNX1T1!0.99!8.81!RUNX1T1;;chr12:66218212..66218244,+!p5@HMGA2!0.98!12.57!HMGA2;;chr12:54410948..54410992,+!p3@HOXC5!0.98!8.49!HOXC5;;chr18:53068911..53068935,-!p4@TCF4!0.97!9.56!TCF4;;chr15:57511589..57511608,+!p4@TCF12!0.97!8.38!TCF12;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.91!HIC1;;chr7:19157043..19157088,-!p2@TWIST1!0.96!21.05!TWIST1;;chr1:119530706..119530736,-!p3@TBX15!0.96!8.16!TBX15;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.36!HMGA2;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!33.94!ZFHX4;;chr2:208030647..208030689,-!p1@KLF7!0.93!65.53!KLF7;;chr2:166326200..166326216,+!p1@CSRNP3!0.93!11.17!CSRNP3;;chr19:45260775..45260838,+!p5@BCL3!0.93!9.99!BCL3;;chr2:214015111..214015179,-!p1@IKZF2!0.92!13.43!IKZF2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.92!7.95!GLIS1;;chr11:47279504..47279563,+!p1@NR1H3!0.91!16.54!NR1H3;;chr1:158979872..158979898,+!p3@IFI16!0.90!22.24!IFI16;;chr9:16870710..16870763,-!p1@BNC2!0.90!12.35!BNC2;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.53!NFIX;;chr3:25470156..25470227,+!p2@RARB!0.90!6.98!RARB;;chr1:170632250..170632277,+!p7@PRRX1!0.90!6.87!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.89!10.74!PITX1;;chr1:170633262..170633285,+!p3@PRRX1!0.88!7.52!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.88!6.66!HOXC5;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.98!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.86!6.23!BNC2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.85!6.12!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.02!ZFY;;chr7:27205106..27205134,-!p2@HOXA9!0.84!5.91!HOXA9;;chr10:63809013..63809041,+!p3@ARID5B!0.83!33.94!ARID5B;;chr12:54380404..54380433,+!p3@HOXC10!0.83!5.80!HOXC10;;chr1:119530493..119530572,-!p1@TBX15!0.83!5.80!TBX15;;chr4:174451370..174451387,-!p1@HAND2!0.83!5.80!HAND2;;chr11:113930291..113930339,+!p2@ZBTB16!0.82!9.45!ZBTB16;;chr2:102091566..102091581,-!p1@RFX8!0.81!5.48!RFX8;;chr8:93107451..93107468,-!p2@RUNX1T1!0.81!5.48!RUNX1T1;;chr5:158527104..158527135,-!p4@EBF1!0.80!5.26!EBF1;;chr7:27224795..27224840,-!p2@HOXA11!0.80!5.26!HOXA11;;chr8:116673894..116673913,-!p12@TRPS1!0.80!5.26!TRPS1;;chr2:214014959..214015006,-!p4@IKZF2!0.80!5.26!IKZF2;;chr1:119530857..119530884,-!p4@TBX15!0.80!5.26!TBX15;;chr5:124082322..124082364,-!p1@ZNF608!0.79!13.96!ZNF608;;chr5:158526459..158526481,-!p2@EBF1!0.79!7.09!EBF1;;chr14:62162258..62162269,+!p2@HIF1A!0.78!52.31!HIF1A;;chr1:61547894..61547968,+!p2@NFIA!0.78!15.90!NFIA;;chr12:24715376..24715432,-!p1@SOX5!0.78!6.55!SOX5;;chr11:113930401..113930422,+!p3@ZBTB16!0.78!5.05!ZBTB16;;chr12:54402745..54402788,+!p1@HOXC8!0.77!4.83!HOXC8;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.25!RUNX2;;chr3:12330560..12330579,+!p1@PPARG!0.76!5.59!PPARG;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.27!CREB3L1;;chr18:22932004..22932021,-!p2@ZNF521!0.75!4.62!ZNF521;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.57!HIF1A;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.69!TBX18;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.98!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.25!TWIST2;;chr1:158979851..1589798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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
|ffid_belonging_in_development=CL:0000355,CL:0000222
|ffid_belonging_in_development=CL:0000355,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor1.CNhs10869.11240-116D7.hg38.nobarcode.ctss.bed.gz
|id=FF:11240-116D7
|id=FF:11240-116D7
|is_a=EFO:0002091;;FF:0000165
|is_a=EFO:0002091;;FF:0000165
|is_obsolete=
|is_obsolete=
|library_id=CNhs10869
|library_id=CNhs10869
|library_id_phase_based=2:CNhs10869
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11240
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GTAGAG.11240
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11240
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GTAGAG.11240
|name=Skeletal Muscle Satellite Cells, donor1
|name=Skeletal Muscle Satellite Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10869,LSID703,release008,COMPLETED
|profile_hcage=CNhs10869,LSID703,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10006,,,
|profile_srnaseq=SRhi10006,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 82:
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|sample_category=primary cells
Line 88: Line 106:
|top_motifs=ZNF238:1.56269734433;NKX3-1:1.55161660159;GFI1B:1.40608384947;PAX4:1.40495009276;EN1,2:1.37920164048;NANOG{mouse}:1.35726557604;NKX2-1,4:1.31675007302;MYBL2:1.28628450465;TFAP4:1.24095716411;GZF1:1.18858581661;YY1:1.18281306976;CDX1,2,4:1.15036029085;TAL1_TCF{3,4,12}:1.09522376666;STAT1,3:1.04512355152;EVI1:1.03454271708;RXR{A,B,G}:1.01525684343;FOXD3:0.966931289187;NKX2-2,8:0.9660757942;MZF1:0.950727596486;GFI1:0.902206278168;CDC5L:0.868763941819;SPZ1:0.828435179152;FOXP1:0.788135924875;POU3F1..4:0.785846383852;DBP:0.782149537655;NR3C1:0.752007208663;SOX17:0.732945819371;IKZF1:0.71335127188;PAX5:0.698901527229;KLF4:0.695485295332;ALX4:0.688989629135;ATF6:0.68767704729;GTF2I:0.68712658312;NFIX:0.68453410788;UFEwm:0.679953810563;PDX1:0.679677697868;AIRE:0.673891125026;TLX1..3_NFIC{dimer}:0.66371902435;TOPORS:0.657006676885;TEAD1:0.653656771892;NFATC1..3:0.60399793881;ZNF143:0.59353059994;HOX{A4,D4}:0.583923510417;EBF1:0.578061158788;ZBTB16:0.564657443424;PAX1,9:0.546076732235;GTF2A1,2:0.534081987259;NKX6-1,2:0.532337712196;HOX{A5,B5}:0.526885674802;TEF:0.516756943963;LHX3,4:0.502102256638;SRF:0.493257549315;NRF1:0.473211014561;DMAP1_NCOR{1,2}_SMARC:0.463225172472;NR1H4:0.447156992786;STAT5{A,B}:0.408771124183;GLI1..3:0.408476392101;NFY{A,B,C}:0.400474940548;HSF1,2:0.398905117727;POU1F1:0.378222099879;TP53:0.370937039836;ELK1,4_GABP{A,B1}:0.352873962035;STAT2,4,6:0.34884622947;NKX3-2:0.348632590843;FOXP3:0.329716320908;HIF1A:0.31661555709;PATZ1:0.307677828989;HMGA1,2:0.307516402814;CEBPA,B_DDIT3:0.306318728255;MAZ:0.304256168428;PRDM1:0.298716401117;PRRX1,2:0.282463360463;TBX4,5:0.280624225755;E2F1..5:0.269981994212;MYFfamily:0.26455854441;XBP1:0.259970073752;NKX2-3_NKX2-5:0.248352149176;MYB:0.224343132085;AR:0.22150414377;NHLH1,2:0.172524158894;PITX1..3:0.164216537853;BPTF:0.160232507951;FOXO1,3,4:0.158455326812;PBX1:0.111940819696;RBPJ:0.108752775102;TFAP2{A,C}:0.0707998404638;RREB1:0.0556048095745;TFDP1:0.0544194167157;GATA4:0.0518655153296;ZNF384:0.0422265511014;HBP1_HMGB_SSRP1_UBTF:0.0359550837408;RFX1:0.0314117268659;HNF4A_NR2F1,2:0.0276520472719;ZFP161:0.0187868852747;MAFB:0.0176947778102;HNF1A:0.0117409534617;BACH2:0.00993461174299;AHR_ARNT_ARNT2:-0.00716636910471;HLF:-0.0072961556309;ZIC1..3:-0.00979204051065;HOX{A6,A7,B6,B7}:-0.0176671019502;ELF1,2,4:-0.0348779389192;PPARG:-0.0354334852817;ONECUT1,2:-0.0497567731493;CUX2:-0.0603304721997;RXRA_VDR{dimer}:-0.0651657279927;TFCP2:-0.072532987942;SREBF1,2:-0.0816697787849;SP1:-0.0829684924131;NFE2L2:-0.106982108653;ESR1:-0.119677308388;FOXL1:-0.126078712084;SOX5:-0.127675530261;EGR1..3:-0.12885160566;HIC1:-0.139264388591;ADNP_IRX_SIX_ZHX:-0.144290802645;ALX1:-0.144580852179;NR6A1:-0.145923097051;IRF1,2:-0.161222258315;XCPE1{core}:-0.168450515165;ZBTB6:-0.182958396083;ZNF148:-0.184674049756;TGIF1:-0.197341906349;FOX{D1,D2}:-0.197784034154;NFE2:-0.199348934917;TLX2:-0.203153748966;FOXA2:-0.204401612793;FOS_FOS{B,L1}_JUN{B,D}:-0.222023708377;CREB1:-0.224150984647;MTF1:-0.225643241977;ZNF423:-0.235231848129;TBP:-0.23648320897;RUNX1..3:-0.24293509411;MEF2{A,B,C,D}:-0.253795072342;GCM1,2:-0.264506450254;MTE{core}:-0.276272558915;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.278537875488;SOX2:-0.285646299385;MED-1{core}:-0.291581856006;T:-0.299796404288;FOSL2:-0.30436917082;PAX3,7:-0.31492228175;IRF7:-0.329238054256;BREu{core}:-0.341822990327;NFE2L1:-0.342087474163;POU2F1..3:-0.36014039923;FOXM1:-0.365252512398;SMAD1..7,9:-0.369038328568;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.376053114869;ARID5B:-0.399087526473;FOXN1:-0.399559633509;NFKB1_REL_RELA:-0.400650075198;ATF4:-0.410292260061;NANOG:-0.44204221919;POU6F1:-0.448611583551;RFX2..5_RFXANK_RFXAP:-0.449761415833;ATF2:-0.463220897057;IKZF2:-0.464860064387;PAX6:-0.467172930003;HAND1,2:-0.470115387372;POU5F1:-0.488175223369;SPI1:-0.488615299017;ETS1,2:-0.491506822016;RORA:-0.499271442886;bHLH_family:-0.508152902655;ESRRA:-0.514383692767;LEF1_TCF7_TCF7L1,2:-0.518771955447;HES1:-0.531299936095;PAX8:-0.554156083964;JUN:-0.560915387215;TFAP2B:-0.564254855072;REST:-0.576631667291;SPIB:-0.58324576022;CRX:-0.60151968924;LMO2:-0.608024110695;PAX2:-0.609861882157;OCT4_SOX2{dimer}:-0.625512680726;ATF5_CREB3:-0.712788869849;EP300:-0.716682220817;GATA6:-0.720138563162;SOX{8,9,10}:-0.741880689397;HOXA9_MEIS1:-0.789778141662;NR5A1,2:-0.827628674601;FOXQ1:-0.829134143471;VSX1,2:-0.883538259228;HMX1:-0.974419060674;SNAI1..3:-0.994438760396;NFIL3:-1.00364714632;FOX{F1,F2,J1}:-1.03586039777;FOX{I1,J2}:-1.1307709559;ZEB1:-1.16953651021;MYOD1:-1.7208155553
|top_motifs=ZNF238:1.56269734433;NKX3-1:1.55161660159;GFI1B:1.40608384947;PAX4:1.40495009276;EN1,2:1.37920164048;NANOG{mouse}:1.35726557604;NKX2-1,4:1.31675007302;MYBL2:1.28628450465;TFAP4:1.24095716411;GZF1:1.18858581661;YY1:1.18281306976;CDX1,2,4:1.15036029085;TAL1_TCF{3,4,12}:1.09522376666;STAT1,3:1.04512355152;EVI1:1.03454271708;RXR{A,B,G}:1.01525684343;FOXD3:0.966931289187;NKX2-2,8:0.9660757942;MZF1:0.950727596486;GFI1:0.902206278168;CDC5L:0.868763941819;SPZ1:0.828435179152;FOXP1:0.788135924875;POU3F1..4:0.785846383852;DBP:0.782149537655;NR3C1:0.752007208663;SOX17:0.732945819371;IKZF1:0.71335127188;PAX5:0.698901527229;KLF4:0.695485295332;ALX4:0.688989629135;ATF6:0.68767704729;GTF2I:0.68712658312;NFIX:0.68453410788;UFEwm:0.679953810563;PDX1:0.679677697868;AIRE:0.673891125026;TLX1..3_NFIC{dimer}:0.66371902435;TOPORS:0.657006676885;TEAD1:0.653656771892;NFATC1..3:0.60399793881;ZNF143:0.59353059994;HOX{A4,D4}:0.583923510417;EBF1:0.578061158788;ZBTB16:0.564657443424;PAX1,9:0.546076732235;GTF2A1,2:0.534081987259;NKX6-1,2:0.532337712196;HOX{A5,B5}:0.526885674802;TEF:0.516756943963;LHX3,4:0.502102256638;SRF:0.493257549315;NRF1:0.473211014561;DMAP1_NCOR{1,2}_SMARC:0.463225172472;NR1H4:0.447156992786;STAT5{A,B}:0.408771124183;GLI1..3:0.408476392101;NFY{A,B,C}:0.400474940548;HSF1,2:0.398905117727;POU1F1:0.378222099879;TP53:0.370937039836;ELK1,4_GABP{A,B1}:0.352873962035;STAT2,4,6:0.34884622947;NKX3-2:0.348632590843;FOXP3:0.329716320908;HIF1A:0.31661555709;PATZ1:0.307677828989;HMGA1,2:0.307516402814;CEBPA,B_DDIT3:0.306318728255;MAZ:0.304256168428;PRDM1:0.298716401117;PRRX1,2:0.282463360463;TBX4,5:0.280624225755;E2F1..5:0.269981994212;MYFfamily:0.26455854441;XBP1:0.259970073752;NKX2-3_NKX2-5:0.248352149176;MYB:0.224343132085;AR:0.22150414377;NHLH1,2:0.172524158894;PITX1..3:0.164216537853;BPTF:0.160232507951;FOXO1,3,4:0.158455326812;PBX1:0.111940819696;RBPJ:0.108752775102;TFAP2{A,C}:0.0707998404638;RREB1:0.0556048095745;TFDP1:0.0544194167157;GATA4:0.0518655153296;ZNF384:0.0422265511014;HBP1_HMGB_SSRP1_UBTF:0.0359550837408;RFX1:0.0314117268659;HNF4A_NR2F1,2:0.0276520472719;ZFP161:0.0187868852747;MAFB:0.0176947778102;HNF1A:0.0117409534617;BACH2:0.00993461174299;AHR_ARNT_ARNT2:-0.00716636910471;HLF:-0.0072961556309;ZIC1..3:-0.00979204051065;HOX{A6,A7,B6,B7}:-0.0176671019502;ELF1,2,4:-0.0348779389192;PPARG:-0.0354334852817;ONECUT1,2:-0.0497567731493;CUX2:-0.0603304721997;RXRA_VDR{dimer}:-0.0651657279927;TFCP2:-0.072532987942;SREBF1,2:-0.0816697787849;SP1:-0.0829684924131;NFE2L2:-0.106982108653;ESR1:-0.119677308388;FOXL1:-0.126078712084;SOX5:-0.127675530261;EGR1..3:-0.12885160566;HIC1:-0.139264388591;ADNP_IRX_SIX_ZHX:-0.144290802645;ALX1:-0.144580852179;NR6A1:-0.145923097051;IRF1,2:-0.161222258315;XCPE1{core}:-0.168450515165;ZBTB6:-0.182958396083;ZNF148:-0.184674049756;TGIF1:-0.197341906349;FOX{D1,D2}:-0.197784034154;NFE2:-0.199348934917;TLX2:-0.203153748966;FOXA2:-0.204401612793;FOS_FOS{B,L1}_JUN{B,D}:-0.222023708377;CREB1:-0.224150984647;MTF1:-0.225643241977;ZNF423:-0.235231848129;TBP:-0.23648320897;RUNX1..3:-0.24293509411;MEF2{A,B,C,D}:-0.253795072342;GCM1,2:-0.264506450254;MTE{core}:-0.276272558915;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.278537875488;SOX2:-0.285646299385;MED-1{core}:-0.291581856006;T:-0.299796404288;FOSL2:-0.30436917082;PAX3,7:-0.31492228175;IRF7:-0.329238054256;BREu{core}:-0.341822990327;NFE2L1:-0.342087474163;POU2F1..3:-0.36014039923;FOXM1:-0.365252512398;SMAD1..7,9:-0.369038328568;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.376053114869;ARID5B:-0.399087526473;FOXN1:-0.399559633509;NFKB1_REL_RELA:-0.400650075198;ATF4:-0.410292260061;NANOG:-0.44204221919;POU6F1:-0.448611583551;RFX2..5_RFXANK_RFXAP:-0.449761415833;ATF2:-0.463220897057;IKZF2:-0.464860064387;PAX6:-0.467172930003;HAND1,2:-0.470115387372;POU5F1:-0.488175223369;SPI1:-0.488615299017;ETS1,2:-0.491506822016;RORA:-0.499271442886;bHLH_family:-0.508152902655;ESRRA:-0.514383692767;LEF1_TCF7_TCF7L1,2:-0.518771955447;HES1:-0.531299936095;PAX8:-0.554156083964;JUN:-0.560915387215;TFAP2B:-0.564254855072;REST:-0.576631667291;SPIB:-0.58324576022;CRX:-0.60151968924;LMO2:-0.608024110695;PAX2:-0.609861882157;OCT4_SOX2{dimer}:-0.625512680726;ATF5_CREB3:-0.712788869849;EP300:-0.716682220817;GATA6:-0.720138563162;SOX{8,9,10}:-0.741880689397;HOXA9_MEIS1:-0.789778141662;NR5A1,2:-0.827628674601;FOXQ1:-0.829134143471;VSX1,2:-0.883538259228;HMX1:-0.974419060674;SNAI1..3:-0.994438760396;NFIL3:-1.00364714632;FOX{F1,F2,J1}:-1.03586039777;FOX{I1,J2}:-1.1307709559;ZEB1:-1.16953651021;MYOD1:-1.7208155553
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11240-116D7;search_select_hide=table117:FF:11240-116D7
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Skeletal Muscle Satellite Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10869
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stagefetus
sexunknown
agefetal
cell typesatellite cell, skeletal muscle
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2068
catalog numberSC3515
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005420
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10869 CAGE DRX008458 DRR009330
Accession ID Hg19

Library idBAMCTSS
CNhs10869 DRZ000755 DRZ002140
Accession ID Hg38

Library idBAMCTSS
CNhs10869 DRZ012105 DRZ013490
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005420
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GTAGAG sRNA-Seq DRX037082 DRR041448
Accession ID Hg19

Library idBAMCTSS
SRhi10006.GTAGAG DRZ007090


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0781
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.265
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0781
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0392
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00771
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0137
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0843
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.187
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.426
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0572
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0334
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0845
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0944
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0443
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0544
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0929
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.289
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0845
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.187
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.417
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.603
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.294
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.38
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.819
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10869

Jaspar motifP-value
MA0002.25.57917e-4
MA0003.10.271
MA0004.10.158
MA0006.10.798
MA0007.10.49
MA0009.10.443
MA0014.10.663
MA0017.10.157
MA0018.20.00174
MA0019.10.102
MA0024.10.15
MA0025.18.49128e-5
MA0027.10.878
MA0028.10.00285
MA0029.10.638
MA0030.10.285
MA0031.10.902
MA0035.21.15753e-4
MA0038.10.255
MA0039.20.104
MA0040.10.321
MA0041.10.29
MA0042.10.587
MA0043.10.194
MA0046.10.0704
MA0047.20.41
MA0048.10.0128
MA0050.10.147
MA0051.10.0403
MA0052.10.017
MA0055.10.087
MA0057.10.187
MA0058.10.118
MA0059.10.164
MA0060.10.341
MA0061.16.00074e-4
MA0062.20.334
MA0065.20.0158
MA0066.10.891
MA0067.10.0118
MA0068.10.0724
MA0069.10.0388
MA0070.10.958
MA0071.10.474
MA0072.10.133
MA0073.10.697
MA0074.10.546
MA0076.10.0316
MA0077.10.405
MA0078.10.142
MA0079.20.306
MA0080.21.65371e-11
MA0081.10.0554
MA0083.10.834
MA0084.10.00581
MA0087.10.994
MA0088.15.11704e-4
MA0090.10.0236
MA0091.10.313
MA0092.10.371
MA0093.10.164
MA0099.24.23316e-6
MA0100.10.176
MA0101.10.00616
MA0102.20.617
MA0103.11.33357e-5
MA0104.20.34
MA0105.10.619
MA0106.10.118
MA0107.11.61624e-4
MA0108.20.0272
MA0111.10.388
MA0112.20.503
MA0113.10.224
MA0114.10.417
MA0115.10.154
MA0116.10.725
MA0117.10.305
MA0119.10.425
MA0122.10.3
MA0124.10.0626
MA0125.10.871
MA0131.10.194
MA0135.10.0264
MA0136.13.0788e-10
MA0137.20.00609
MA0138.20.158
MA0139.10.336
MA0140.10.00863
MA0141.10.329
MA0142.10.0615
MA0143.10.531
MA0144.10.425
MA0145.10.844
MA0146.10.278
MA0147.10.396
MA0148.10.175
MA0149.10.273
MA0150.10.00111
MA0152.10.00615
MA0153.10.416
MA0154.10.0804
MA0155.10.226
MA0156.11.68777e-6
MA0157.10.862
MA0159.10.364
MA0160.10.00125
MA0162.10.228
MA0163.10.00988
MA0164.10.677
MA0258.10.117
MA0259.10.756



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10869

Novel motifP-value
10.768
100.314
1000.963
1010.834
1020.0758
1030.552
1040.867
1050.604
1061.26717e-4
1070.449
1080.224
1090.254
110.776
1100.137
1110.27
1120.0668
1130.00645
1140.1
1150.125
1160.429
1170.377
1180.583
1190.368
120.282
1200.927
1210.934
1220.00113
1230.135
1240.364
1250.774
1260.893
1270.0365
1280.474
1290.0895
130.817
1300.0849
1310.902
1320.241
1330.922
1340.434
1350.253
1360.539
1370.122
1380.111
1390.0368
140.458
1400.262
1410.343
1420.947
1430.0155
1440.415
1450.965
1460.771
1470.418
1480.3
1490.852
150.116
1500.791
1510.545
1520.0776
1530.565
1540.742
1550.0307
1560.0278
1570.317
1580.0164
1590.531
160.999
1600.876
1610.458
1620.0693
1630.832
1640.407
1650.838
1660.0954
1670.199
1680.222
1690.74
170.277
180.64
190.206
20.789
200.852
210.0159
220.946
230.0745
240.563
250.171
260.726
270.457
280.341
290.417
30.701
300.869
310.681
320.00105
330.849
340.935
350.335
360.0627
370.802
380.357
390.779
40.0256
400.00319
411.3352e-4
420.947
430.336
440.344
450.145
460.552
470.897
480.98
490.172
50.213
500.69
510.858
520.41
530.584
540.487
550.365
560.981
570.803
580.176
590.233
60.487
600.0573
610.88
620.0711
630.461
640.495
650.31
660.984
670.442
680.612
690.597
70.224
700.0438
710.547
720.843
730.757
740.249
750.419
760.628
770.538
780.303
790.0546
80.957
800.155
810.59
820.198
830.81
840.548
850.0176
860.554
870.879
880.411
890.153
90.834
900.803
910.342
920.645
930.68
940.722
950.883
960.523
970.931
980.152
990.0017



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10869


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000035 (single fate stem cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000034 (stem cell)
0000594 (skeletal muscle satellite cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000165 (human skeletal muscle satellite cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

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