FF:11243-116E1: Difference between revisions

Latest revision as of 16:27, 3 June 2020

Name:	Endothelial Cells - Umbilical vein, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10872
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical vein
dev stage	fetus
sex	unknown
age	fetal
cell type	blood vessel endothelial cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	4242
catalog number	SC8005
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004928

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10872		CAGE		DRX008231		DRR009103

Accession ID Hg19

Library id		BAM		CTSS
CNhs10872		DRZ000528		DRZ001913

Accession ID Hg38

Library id		BAM		CTSS
CNhs10872		DRZ011878		DRZ013263

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004928

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10008.TGACCA		sRNA-Seq		DRX037110		DRR041476

Accession ID Hg19

Library id		BAM		CTSS
SRhi10008.TGACCA		DRZ007118

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.116
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.55
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.01
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.459
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0371
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0142
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.172
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.153
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.141
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.265
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0234
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.408
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0714
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.16
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.256
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0371
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10872

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.41488e-5
MA0003.1	MA0003.1	0.199
MA0004.1	MA0004.1	0.613
MA0006.1	MA0006.1	0.456
MA0007.1	MA0007.1	0.917
MA0009.1	MA0009.1	0.947
MA0014.1	MA0014.1	0.666
MA0017.1	MA0017.1	0.168
MA0018.2	MA0018.2	0.00387
MA0019.1	MA0019.1	0.835
MA0024.1	MA0024.1	1.24691e-6
MA0025.1	MA0025.1	0.0414
MA0027.1	MA0027.1	0.866
MA0028.1	MA0028.1	0.156
MA0029.1	MA0029.1	0.846
MA0030.1	MA0030.1	0.386
MA0031.1	MA0031.1	0.705
MA0035.2	MA0035.2	0.228
MA0038.1	MA0038.1	0.0373
MA0039.2	MA0039.2	0.526
MA0040.1	MA0040.1	0.763
MA0041.1	MA0041.1	0.704
MA0042.1	MA0042.1	0.907
MA0043.1	MA0043.1	2.04868e-4
MA0046.1	MA0046.1	0.467
MA0047.2	MA0047.2	0.927
MA0048.1	MA0048.1	0.0234
MA0050.1	MA0050.1	0.489
MA0051.1	MA0051.1	0.0928
MA0052.1	MA0052.1	0.0924
MA0055.1	MA0055.1	0.0243
MA0057.1	MA0057.1	0.605
MA0058.1	MA0058.1	0.896
MA0059.1	MA0059.1	0.55
MA0060.1	MA0060.1	1.52183e-5
MA0061.1	MA0061.1	6.74532e-5
MA0062.2	MA0062.2	0.708
MA0065.2	MA0065.2	0.0794
MA0066.1	MA0066.1	0.24
MA0067.1	MA0067.1	0.204
MA0068.1	MA0068.1	0.0373
MA0069.1	MA0069.1	0.0708
MA0070.1	MA0070.1	0.58
MA0071.1	MA0071.1	0.997
MA0072.1	MA0072.1	0.792
MA0073.1	MA0073.1	0.532
MA0074.1	MA0074.1	0.556
MA0076.1	MA0076.1	0.753
MA0077.1	MA0077.1	3.11727e-4
MA0078.1	MA0078.1	0.197
MA0079.2	MA0079.2	0.866
MA0080.2	MA0080.2	0.0718
MA0081.1	MA0081.1	0.237
MA0083.1	MA0083.1	0.0428
MA0084.1	MA0084.1	0.0208
MA0087.1	MA0087.1	0.0216
MA0088.1	MA0088.1	0.0462
MA0090.1	MA0090.1	0.463
MA0091.1	MA0091.1	0.27
MA0092.1	MA0092.1	0.453
MA0093.1	MA0093.1	0.671
MA0099.2	MA0099.2	0.279
MA0100.1	MA0100.1	0.282
MA0101.1	MA0101.1	0.0691
MA0102.2	MA0102.2	9.81356e-4
MA0103.1	MA0103.1	0.00242
MA0104.2	MA0104.2	0.504
MA0105.1	MA0105.1	9.66229e-4
MA0106.1	MA0106.1	0.0731
MA0107.1	MA0107.1	0.0152
MA0108.2	MA0108.2	0.00178
MA0111.1	MA0111.1	0.368
MA0112.2	MA0112.2	2.05412e-5
MA0113.1	MA0113.1	0.401
MA0114.1	MA0114.1	0.0498
MA0115.1	MA0115.1	0.336
MA0116.1	MA0116.1	0.0233
MA0117.1	MA0117.1	0.546
MA0119.1	MA0119.1	0.268
MA0122.1	MA0122.1	0.356
MA0124.1	MA0124.1	0.171
MA0125.1	MA0125.1	0.795
MA0131.1	MA0131.1	0.0902
MA0135.1	MA0135.1	0.0517
MA0136.1	MA0136.1	0.0544
MA0137.2	MA0137.2	0.778
MA0138.2	MA0138.2	0.259
MA0139.1	MA0139.1	0.579
MA0140.1	MA0140.1	0.266
MA0141.1	MA0141.1	0.445
MA0142.1	MA0142.1	0.318
MA0143.1	MA0143.1	0.833
MA0144.1	MA0144.1	0.894
MA0145.1	MA0145.1	0.171
MA0146.1	MA0146.1	0.0871
MA0147.1	MA0147.1	0.603
MA0148.1	MA0148.1	0.387
MA0149.1	MA0149.1	0.0226
MA0150.1	MA0150.1	0.107
MA0152.1	MA0152.1	0.68
MA0153.1	MA0153.1	0.216
MA0154.1	MA0154.1	0.00666
MA0155.1	MA0155.1	0.745
MA0156.1	MA0156.1	0.0152
MA0157.1	MA0157.1	0.926
MA0159.1	MA0159.1	0.07
MA0160.1	MA0160.1	0.134
MA0162.1	MA0162.1	0.801
MA0163.1	MA0163.1	0.0797
MA0164.1	MA0164.1	0.771
MA0258.1	MA0258.1	0.00229
MA0259.1	MA0259.1	0.592

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10872

Novel motif	Logo	P-value
1	1	0.814
10	10	0.986
100	100	0.433
101	101	0.925
102	102	0.565
103	103	0.194
104	104	0.807
105	105	0.771
106	106	0.00781
107	107	0.67
108	108	0.453
109	109	0.273
11	11	0.506
110	110	0.384
111	111	0.72
112	112	0.183
113	113	0.253
114	114	0.35
115	115	0.305
116	116	0.415
117	117	0.745
118	118	0.951
119	119	0.507
12	12	0.508
120	120	0.261
121	121	0.287
122	122	0.221
123	123	0.706
124	124	0.109
125	125	0.575
126	126	0.311
127	127	0.0662
128	128	0.129
129	129	0.824
13	13	0.465
130	130	0.474
131	131	0.245
132	132	0.349
133	133	0.478
134	134	0.935
135	135	0.548
136	136	0.0782
137	137	0.204
138	138	0.804
139	139	0.0183
14	14	0.526
140	140	0.184
141	141	0.317
142	142	0.0055
143	143	0.0533
144	144	0.703
145	145	0.948
146	146	0.993
147	147	0.778
148	148	0.0455
149	149	0.517
15	15	0.204
150	150	0.824
151	151	0.282
152	152	0.35
153	153	0.116
154	154	0.711
155	155	0.183
156	156	0.207
157	157	0.0604
158	158	0.0378
159	159	0.0931
16	16	0.281
160	160	0.836
161	161	0.131
162	162	0.931
163	163	0.884
164	164	0.273
165	165	0.523
166	166	0.812
167	167	0.426
168	168	0.71
169	169	0.201
17	17	0.201
18	18	0.00828
19	19	0.474
2	2	0.29
20	20	0.209
21	21	0.476
22	22	0.179
23	23	0.0155
24	24	0.954
25	25	0.517
26	26	0.181
27	27	0.203
28	28	0.73
29	29	0.79
3	3	0.58
30	30	0.274
31	31	0.156
32	32	0.00765
33	33	0.728
34	34	0.901
35	35	0.162
36	36	0.238
37	37	0.447
38	38	0.733
39	39	0.541
4	4	0.11
40	40	0.745
41	41	0.839
42	42	0.884
43	43	0.0813
44	44	0.296
45	45	0.319
46	46	0.102
47	47	0.94
48	48	0.682
49	49	0.104
5	5	0.354
50	50	0.994
51	51	0.296
52	52	0.181
53	53	0.48
54	54	0.253
55	55	0.922
56	56	0.527
57	57	0.701
58	58	0.0746
59	59	0.167
6	6	0.641
60	60	0.0378
61	61	0.911
62	62	0.0803
63	63	0.627
64	64	0.306
65	65	0.0719
66	66	0.218
67	67	0.966
68	68	0.631
69	69	0.633
7	7	0.928
70	70	9.6009e-5
71	71	0.268
72	72	0.981
73	73	0.848
74	74	0.645
75	75	0.706
76	76	0.768
77	77	0.116
78	78	0.968
79	79	0.33
8	8	0.905
80	80	0.608
81	81	0.102
82	82	0.139
83	83	0.678
84	84	0.729
85	85	0.00785
86	86	0.508
87	87	0.63
88	88	0.479
89	89	0.0322
9	9	0.398
90	90	0.58
91	91	0.495
92	92	0.322
93	93	0.58
94	94	0.0996
95	95	0.703
96	96	0.366
97	97	0.584
98	98	0.129
99	99	0.176

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10872

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000247 human endothelial cell of umbilical vein sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
0002618 (endothelial cell of umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
0000247 (human endothelial cell of umbilical vein sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001638,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0005291,UBERON:0000487,UBERON:0001981,UBERON:0003920,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
+|DRA_sample_Accession=CAGE@SAMD00004928
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:0000222,CL:0002543,CL:0002618,CL:0002546
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004928
+|accession_numbers=CAGE;DRX008231;DRR009103;DRZ000528;DRZ001913;DRZ011878;DRZ013263
+|accession_numbers_RNASeq=sRNA-Seq;DRX037110;DRR041476;DRZ007118
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052,FF:0000247
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.39!242.81!ERG;;chr20:62680984..62680999,-!p1@SOX18!2.25!228.43!SOX18;;chr18:53068911..53068935,-!p4@TCF4!2.08!134.84!TCF4;;chr8:10588010..10588030,-!p1@SOX7!1.94!86.44!SOX7;;chr12:96588368..96588394,+!p3@ELK3!1.88!191.64!ELK3;;chr3:169381420..169381535,-!p1@MECOM!1.65!50.72!MECOM;;chr17:6926362..6926377,+!p1@BCL6B!1.62!41.17!BCL6B;;chr8:55370487..55370503,+!p1@SOX17!1.51!31.61!SOX17;;chr7:27205106..27205134,-!p2@HOXA9!1.43!25.99!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!1.43!25.72!HOXA9;;chr18:22932080..22932170,-!p1@ZNF521!1.40!99.21!ZNF521;;chr17:46682321..46682362,-!p1@HOXB6!1.36!22.06!HOXB6;;chr6:34204921..34204939,+!p3@HMGA1!1.33!595.72!HMGA1;;chr18:53068982..53068993,-!p20@TCF4!1.24!16.52!TCF4;;chr10:94449703..94449718,+!p1@HHEX!1.23!60.63!HHEX;;chr7:15726243..15726293,-!p2@MEOX2!1.22!15.45!MEOX2;;chr17:46688334..46688385,-!p1@HOXB7!1.21!21.79!HOXB7;;chr17:46655672..46655697,-!p3@HOXB4!1.20!14.91!HOXB4;;chr19:46801639..46801699,+!p1@HIF3A!1.20!14.91!HIF3A;;chr9:16705069..16705086,-!p3@BNC2!1.20!14.73!BNC2;;chr13:72441315..72441454,-!p1@DACH1!1.19!29.20!DACH1;;chr5:71803177..71803255,-!p1@ZNF366!1.16!13.31!ZNF366;;chr7:115670804..115670825,-!p1@TFEC!1.15!13.04!TFEC;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.95!HOXA3;;chr19:53496768..53496799,-!p1@ZNF702P!1.12!18.93!ZNF702P;;chr3:168864315..168864339,-!p2@MECOM!1.11!19.74!MECOM;;chr5:88178983..88179012,-!p1@MEF2C!1.10!89.66!MEF2C;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.24!HMGA2;;chr7:15726296..15726315,-!p1@MEOX2!1.10!11.52!MEOX2;;chr6:28321971..28321995,-!p1@ZNF323!1.08!10.98!ZNF323;;chr12:66218255..66218304,+!p3@HMGA2!1.06!28.40!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.45!KDM5D;;chr19:13213511..13213545,-!p2@LYL1!1.04!10.81!LYL1;;chr19:13213399..13213414,-!p6@LYL1!1.01!9.20!LYL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.22!ZFPM2;;chr1:200008734..200008765,+!p2@NR5A2!0.99!8.75!NR5A2;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.75!HOXD8;;chr2:177053386..177053402,+!p1@HOXD1!0.99!8.66!HOXD1;;chr9:14314131..14314147,-!p2@NFIB!0.98!49.11!NFIB;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.14!HMGA2;;chr10:31288398..31288455,-!p2@ZNF438!0.96!9.64!ZNF438;;chr11:128563948..128564003,+!p1@FLI1!0.95!98.77!FLI1;;chr18:53068940..53068951,-!p21@TCF4!0.95!7.95!TCF4;;chr18:53177984..53178004,-!p17@TCF4!0.95!7.95!TCF4;;chr18:53068893..53068902,-!p28@TCF4!0.93!7.50!TCF4;;chr11:128563652..128563689,+!p3@FLI1!0.93!7.50!FLI1;;chr4:146402843..146402864,+!p3@SMAD1!0.92!15.00!SMAD1;;chr9:124991204..124991246,-!p1@LHX6!0.92!7.23!LHX6;;chr7:27183291..27183324,-!p1@HOXA5!0.92!7.23!HOXA5;;chr10:31288370..31288393,-!p3@ZNF438!0.92!7.23!ZNF438;;chr16:86600426..86600441,+!p1@FOXC2!0.91!18.13!FOXC2;;chr13:72441074..72441172,-!p2@DACH1!0.90!6.97!DACH1;;chr6:34204672..34204692,+!p1@HMGA1!0.89!796.91!HMGA1;;chr17:46655704..46655718,-!p2@HOXB4!0.89!10.36!HOXB4;;chr1:158979686..158979745,+!p1@IFI16!0.88!226.64!IFI16;;chr3:168865194..168865245,-!p3@MECOM!0.88!8.57!MECOM;;chr9:14314566..14314618,-!p1@NFIB!0.86!78.94!NFIB;;chr15:96873984..96873999,+!p3@NR2F2!0.85!47.51!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!0.84!39.47!GATA2;;chr20:50159198..50159299,-!p1@NFATC2!0.84!8.84!NFATC2;;chr4:146403912..146403972,+!p5@SMAD1!0.84!7.77!SMAD1;;chr2:177001290..177001315,+!p1@HOXD3!0.84!5.89!HOXD3;;chr1:47695003..47695042,-!p2@TAL1!0.83!5.80!TAL1;;chr3:25469815..25469866,+!p3@RARB!0.83!5.72!RARB;;chr18:53257001..53257015,-!p5@TCF4!0.82!9.91!TCF4;;chr18:22932004..22932021,-!p2@ZNF521!0.82!5.63!ZNF521;;chr8:93107451..93107468,-!p2@RUNX1T1!0.82!5.54!RUNX1T1;;chr9:14083467..14083483,-!p4@NFIB!0.81!14.20!NFIB;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.45!HOXB8;;chr19:46800289..46800327,+!p2@HIF3A!0.81!5.45!HIF3A;;chr15:96873921..96873946,+!p1@NR2F2!0.80!163.78!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.79!25.81!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.18!ZFY;;chr1:200011711..200011752,+!p3@NR5A2!0.78!5.00!NR5A2;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.91!TBX1;;chr12:66218836..66218888,+!p1@HMGA2!0.76!49.03!HMGA2;;chr1:205601064..205601087,-!p4@ELK4!0.76!9.73!ELK4;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.88!HOXB7;;chr7:27196217..27196246,-!p2@HOXA7!0.75!4.64!HOXA7;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.64!HOXA7;;chr1:158979792..158979814,+!p2@IFI16!0.74!47.78!IFI16;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.91!HMGA2;;chr12:80084018..80084035,-!p17@PAWR!0.74!4.55!PAWR;;chr10:94449675..94449694,+!p2@HHEX!0.73!12.77!HHEX;;chr4:299227..299272,-!p1@ZNF732!0.73!4.38!ZNF732;;chr17:47892398..47892407,+!p2@KAT7!0.73!4.38!KAT7;;chr5:88179017..88179046,-!p2@MEF2C!0.72!19.02!MEF2C;;chr9:14314106..14314119,-!p5@NFIB!0.72!8.13!NFIB;;chr20:50721803..50721857,-!p2@ZFP64!0.72!6.97!ZFP64;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.29!HOXA10;;chr7:15726220..15726236,-!p4@MEOX2!0.72!4.20!MEOX2;;chr7:27183263..27183284,-!p2@HOXA5!0.72!4.20!HOXA5;;chr13:72441506..72441562,-!p3@DACH1!0.72!4.20!DACH1;;chr10:8096631..8096660,+!p1@GATA3!0.71!5.09!GATA3;;chr2:46524537..46524553,+!p1@EPAS1!0.70!448.91!EPAS1;;chr15:96874012..96874042,+!p2@NR2F2!0.70!41.26!NR2F2;;chr6:130339710..130339745,+!p1@L3MBTL3!0.70!35.72!L3MBTL3;;chr9:14082760..14082775,-!p6@NFIB!0.70!7.05!NFIB;;chr19:53496806..53496848,-!p2@ZNF702P!0.70!6.34!ZNF702P;;chr6:85473156..85473210,-!p2@TBX18!0.70!5.00!TBX18;;chr1:47697539..47697573,-!p3@TAL1!0.70!4.02!TAL1;;chr9:14314522..14314556,-!p3@NFIB!0.69!10.00!NFIB;;chr4:57522166..57522260,-!p2@HOPX!0.69!4.55!HOPX;;chr5:88179195..88179224,-!p3@MEF2C!0.68!6.34!MEF2C;;chr7:27224842..27224872,-!p1@HOXA11!0.68!3.84!HOXA11;;chr11:128562372..128562397,+!p4@FLI1!0.68!3.84!FLI1;;chr3:25470156..25470227,+!p2@RARB!0.68!3.75!RARB;;chr13:41240737..41240787,-!p1@FOXO1!0.67!50.19!FOXO1;;chr18:53255415..53255491,-!p1@TCF4!0.67!36.26!TCF4;;chr18:53257027..53257052,-!p3@TCF4!0.67!16.70!TCF4;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.89!ETV4;;chrX:66763856..66763896,+!p1@AR!0.67!5.54!AR;;chr3:169381183..169381205,-!p4@MECOM!0.67!3.66!MECOM;;chr4:146402795..146402816,+!p7@SMAD1!0.66!5.09!SMAD1;;chr14:74256787..74256858,-!p6@C14orf43!0.66!3.57!C14orf43;;chr18:19749541..19749557,+!p1@GATA6!0.65!12.41!GATA6;;chr5:124082322..124082364,-!p1@ZNF608!0.65!9.82!ZNF608;;chr17:41277372..41277418,-!p1@BRCA1!0.64!14.02!BRCA1;;chr9:14313893..14313908,-!p7@NFIB!0.64!5.18!NFIB;;chr2:25475120..25475176,-!p2@DNMT3A!0.64!4.82!DNMT3A;;chr6:28321909..28321965,-!p3@ZNF323!0.64!3.39!ZNF323;;chr8:93115584..93115642,-!p5@RUNX1T1!0.64!3.39!RUNX1T1;;chr11:19262421..19262455,-!p3@E2F8!0.64!3.39!E2F8;;chr1:158979680..158979683,+!p9@IFI16!0.63!4.73!IFI16;;chr1:221052733..221052749,+!p2@HLX!0.63!4.46!HLX;;chr5:92918919..92918942,+!p1@NR2F1!0.62!16.70!NR2F1;;chr18:52989031..52989079,-!p2@TCF4!0.62!8.39!TCF4;;chr1:214161272..214161322,+!p1@PROX1!0.62!4.73!PROX1;;chr7:139741594..139741615,-!p5@PARP12!0.62!3.21!PARP12;;chr17:6926381..6926392,+!p2@BCL6B!0.62!3.21!BCL6B;;chr18:22931979..22931992,-!p3@ZNF521!0.62!3.21!ZNF521;;chr3:168864383..168864400,-!p7@MECOM!0.62!3.13!MECOM;;chr6:126112074..126112144,+!p1@NCOA7!0.61!49.11!NCOA7;;chr20:42295713..42295738,+!p2@MYBL2!0.61!21.61!MYBL2;;chr7:26191809..26191890,+!p1@NFE2L3!0.61!17.95!NFE2L3;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.61!16.43!TAL1;;chr19:58341656..58341694,+!p5@ZNF587!0.61!3.84!ZNF587;;chr7:27170359..27170381,-!p1@HOXA4!0.61!3.04!HOXA4;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.29!FOXO1;;chrX:66763815..66763854,+!p2@AR!0.60!4.11!AR;;chr12:2986275..2986363,-!p1@FOXM1!0.59!35.09!FOXM1;;chr19:49865646..49865718,-!p1@TEAD2!0.59!30.27!TEAD2;;chr3:178789522..178789564,-!p2@ZMAT3!0.59!25.63!ZMAT3;;chr17:41623692..41623715,-!p1@ETV4!0.59!14.65!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.59!3.57!GATA3;;chr13:72440901..72440968,-!p4@DACH1!0.59!2.86!DACH1;;chr4:146404119..146404158,+!p9@SMAD1!0.59!2.86!SMAD1;;chr12:2986206..2986258,-!p2@FOXM1!0.58!20.36!FOXM1;;chr15:96874145..96874166,+!p7@NR2F2!0.58!5.98!NR2F2;;chr3:33482052..33482116,-!p2@UBP1!0.58!4.73!UBP1;;chr18:52989565..52989623,-!p9@TCF4!0.58!3.75!TCF4;;chr13:79177703..79177729,-!p2@POU4F1!0.58!2.77!POU4F1;;chr4:146402827..146402839,+!p10@SMAD1!0.58!2.77!SMAD1;;chr15:96873861..96873872,+!p9@NR2F2!0.57!6.34!NR2F2;;chr3:25469724..25469773,+!p1@RARB!0.57!4.20!RARB;;chr5:124082580..124082603,-!p4@ZNF608!0.57!3.21!ZNF608;;chr5:88180342..88180365,-!p10@MEF2C!0.57!2.68!MEF2C;;chr11:19262461..19262476,-!p5@E2F8!0.57!2.68!E2F8;;chr14:55493763..55493824,-!p1@WDHD1!0.56!24.47!WDHD1;;chr10:45496320..45496336,+!p3@ZNF22!0.56!2.59!ZNF22;;chr12:85673977..85674015,+!p1@ALX1!0.56!2.59!ALX1;;chr7:27142290..27142310,-!p1@HOXA2!0.56!2.59!HOXA2;;chr15:50647274..50647336,-!p1@GABPB1!0.55!22.06!GABPB1;;chr15:57210961..57211012,+!p3@TCF12!0.55!9.73!TCF12;;chr12:80084167..80084197,-!p5@PAWR!0.55!7.05!PAWR;;chr12:66218378..66218401,+!p6@HMGA2!0.55!4.38!HMGA2;;chr10:31608127..31608156,+!p1@ZEB1!0.54!58.67!ZEB1;;chr6:31126291..31126399,+!p1@TCF19!0.54!29.38!TCF19;;chr5:176738887..176738934,-!p1@MXD3!0.54!20.63!MXD3;;chr3:114343826..114343869,-!p4@ZBTB20!0.54!5.72!ZBTB20;;chr3:168865250..168865272,-!p5@MECOM!0.54!2.50!MECOM;;chr7:27183325..27183338,-!p5@HOXA5!0.54!2.50!HOXA5;;chr19:13213555..13213568,-!p5@LYL1!0.54!2.50!LYL1;;chr12:96588279..96588299,+!p4@ELK3!0.53!14.11!ELK3;;chr1:23696308..23696339,-!p2@ZNF436!0.53!5.89!ZNF436;;chr1:158985493..158985535,+!p4@IFI16!0.53!4.02!IFI16;;chr3:71355163..71355209,-!p5@FOXP1!0.53!3.57!FOXP1;;chr3:25470062..25470084,+!p4@RARB!0.53!2.41!RARB;;chr4:57522598..57522664,-!p3@HOPX!0.53!2.41!HOPX;;chr17:46691732..46691766,-!p4@HOXB8!0.53!2.41!HOXB8;;chr10:94451574..94451587,+!p6@HHEX!0.53!2.41!HHEX;;chr4:87857433..87857472,+!p9@AFF1!0.52!4.73!AFF1;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.78!MYBL2;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.63!ELK3;;chr9:116638565..116638606,+!p1@ZNF618!0.51!11.88!ZNF618;;chr1:205601000..205601055,-!p2@ELK4!0.51!11.61!ELK4;;chr10:35484804..35484902,+!p2@CREM!0.51!10.63!CREM;;chr15:90544532..90544563,+!p1@ZNF710!0.51!5.27!ZNF710;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002543;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002618;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
+|ffid_belonging_in_development=CL:0002546,CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11243-116E1
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000247
+|is_a=EFO:0002091;;FF:0000247
+|is_obsolete=
+|library_id=CNhs10872
+|library_id_phase_based=2:CNhs10872
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11243
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.TGACCA.11243
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11243
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.TGACCA.11243
 |name=Endothelial Cells - Umbilical vein, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10872,LSID703,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10008,,,
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 |rna_box=116
 |rna_catalog_number=SC8005
@@ Line 54: / Line 80: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=116E1
+|rna_tube_id=1.16E+03
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10008.TGACCA
 |sample_age=fetal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 77: / Line 105: @@
 |sample_tissue=umbilical vein
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11243-116E1;search_select_hide=table117:FF:11243-116E1
 }}

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FF:11243-116E1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:27, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0