FF:11267-116G7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004785 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004785 | ||
|accession_numbers=CAGE;DRX008234;DRR009106;DRZ000531;DRZ001916;DRZ011881;DRZ013266 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037130;DRR041496;DRZ007138 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor1.CNhs12497.11267-116G7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor1.CNhs12497.11267-116G7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor1.CNhs12497.11267-116G7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor1.CNhs12497.11267-116G7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor1.CNhs12497.11267-116G7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11267-116G7 | |id=FF:11267-116G7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000052 | ||
|is_obsolete= | |||
|library_id=CNhs12497 | |||
|library_id_phase_based=2:CNhs12497 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11267 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.TGACCA.11267 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11267 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.TGACCA.11267 | |||
|name=Endothelial Cells - Vein, donor1 | |name=Endothelial Cells - Vein, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12497,LSID916,release011,COMPLETED | |profile_hcage=CNhs12497,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA200-R10n | |rna_catalog_number=CA200-R10n | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116G7 | |rna_tube_id=116G7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10009.TGACCA | |||
|sample_age=Neonatal | |sample_age=Neonatal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.48619012334391e-209!GO:0005737;cytoplasm;1.10653291707545e-185!GO:0043226;organelle;8.92922207086564e-162!GO:0043229;intracellular organelle;1.56874370688746e-161!GO:0043231;intracellular membrane-bound organelle;1.71829972621685e-154!GO:0043227;membrane-bound organelle;3.90099960726347e-154!GO:0044422;organelle part;1.17167248924475e-140!GO:0044446;intracellular organelle part;2.59239150841367e-139!GO:0044444;cytoplasmic part;1.08345169725769e-131!GO:0032991;macromolecular complex;3.76673945480692e-99!GO:0030529;ribonucleoprotein complex;3.67887299361492e-83!GO:0005515;protein binding;1.39022782433735e-80!GO:0044237;cellular metabolic process;1.41259779717188e-75!GO:0044238;primary metabolic process;1.23951113538984e-74!GO:0005739;mitochondrion;5.8030737270234e-71!GO:0043233;organelle lumen;3.28198290806607e-68!GO:0031974;membrane-enclosed lumen;3.28198290806607e-68!GO:0043170;macromolecule metabolic process;2.16431569201647e-65!GO:0044428;nuclear part;1.33835191962109e-63!GO:0003723;RNA binding;3.59504362302418e-61!GO:0019538;protein metabolic process;1.73233327259409e-54!GO:0005840;ribosome;2.13903258191477e-53!GO:0005634;nucleus;1.09846345818851e-52!GO:0043234;protein complex;2.9108943434477e-51!GO:0031090;organelle membrane;1.26898265711485e-50!GO:0006412;translation;1.66066920554694e-49!GO:0044260;cellular macromolecule metabolic process;2.2864957009169e-49!GO:0044267;cellular protein metabolic process;3.02723338711419e-49!GO:0003735;structural constituent of ribosome;2.34383730518274e-47!GO:0044429;mitochondrial part;1.20028773784987e-45!GO:0016043;cellular component organization and biogenesis;3.90376343278909e-45!GO:0009058;biosynthetic process;5.40832407405467e-43!GO:0031967;organelle envelope;9.96567521264978e-43!GO:0031975;envelope;2.25050378850133e-42!GO:0006396;RNA processing;3.76136405434146e-42!GO:0044249;cellular biosynthetic process;5.88931030847956e-42!GO:0005829;cytosol;1.65276051727661e-41!GO:0033279;ribosomal subunit;2.14803664092907e-41!GO:0031981;nuclear lumen;7.3942923081969e-41!GO:0009059;macromolecule biosynthetic process;5.27937431501099e-38!GO:0043228;non-membrane-bound organelle;5.62242078226291e-37!GO:0043232;intracellular non-membrane-bound organelle;5.62242078226291e-37!GO:0015031;protein transport;8.55516999104781e-37!GO:0033036;macromolecule localization;3.95793510328986e-36!GO:0006996;organelle organization and biogenesis;1.30835368403419e-33!GO:0045184;establishment of protein localization;2.24808622281631e-33!GO:0008104;protein localization;3.89514143441614e-33!GO:0046907;intracellular transport;4.74945937744825e-33!GO:0043283;biopolymer metabolic process;1.85935675100172e-32!GO:0005740;mitochondrial envelope;3.72887801066935e-31!GO:0065003;macromolecular complex assembly;4.16494599340304e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.85494645420632e-31!GO:0016071;mRNA metabolic process;1.44878915252158e-30!GO:0031966;mitochondrial membrane;8.30627772816679e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.13580077312588e-29!GO:0008380;RNA splicing;1.49107655387197e-28!GO:0022607;cellular component assembly;5.40324245563726e-28!GO:0019866;organelle inner membrane;5.91429699214058e-28!GO:0006397;mRNA processing;1.37027352936239e-26!GO:0006886;intracellular protein transport;1.85390999103164e-26!GO:0005743;mitochondrial inner membrane;2.42212389790394e-26!GO:0000166;nucleotide binding;5.83212825143686e-26!GO:0006259;DNA metabolic process;7.20580359065748e-26!GO:0044445;cytosolic part;5.83602280274654e-25!GO:0005654;nucleoplasm;2.13749810747652e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.06151951523649e-23!GO:0010467;gene expression;5.26316716531526e-23!GO:0007049;cell cycle;7.55687530631577e-23!GO:0051649;establishment of cellular localization;1.39699838692202e-22!GO:0051641;cellular localization;3.43678280699208e-22!GO:0015934;large ribosomal subunit;9.13186828082316e-22!GO:0005681;spliceosome;1.0129711201871e-21!GO:0006119;oxidative phosphorylation;4.15426027091553e-21!GO:0015935;small ribosomal subunit;1.07364590602319e-20!GO:0044455;mitochondrial membrane part;2.15539417669127e-20!GO:0012505;endomembrane system;2.41751480878479e-20!GO:0016462;pyrophosphatase activity;7.26619370834188e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.73913176231732e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.18818307828545e-19!GO:0044451;nucleoplasm part;1.25448273160818e-19!GO:0017111;nucleoside-triphosphatase activity;3.18302375024281e-19!GO:0017076;purine nucleotide binding;3.3838963023546e-19!GO:0032553;ribonucleotide binding;3.99873814586008e-19!GO:0032555;purine ribonucleotide binding;3.99873814586008e-19!GO:0016874;ligase activity;1.52636364333774e-18!GO:0031980;mitochondrial lumen;1.98317517378829e-18!GO:0005759;mitochondrial matrix;1.98317517378829e-18!GO:0022402;cell cycle process;5.87163726502792e-18!GO:0006457;protein folding;2.00079126615189e-17!GO:0005730;nucleolus;2.51482019141902e-17!GO:0005746;mitochondrial respiratory chain;1.08407536288325e-16!GO:0043412;biopolymer modification;1.48878479621601e-16!GO:0000278;mitotic cell cycle;2.69016266796419e-16!GO:0006605;protein targeting;3.10897968895762e-16!GO:0032559;adenyl ribonucleotide binding;3.45122186415876e-16!GO:0005783;endoplasmic reticulum;3.74896100661884e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.13576500190701e-16!GO:0030554;adenyl nucleotide binding;4.34873854961477e-16!GO:0048770;pigment granule;4.40978982686536e-16!GO:0042470;melanosome;4.40978982686536e-16!GO:0006512;ubiquitin cycle;5.02894746623285e-16!GO:0005524;ATP binding;5.35685497413503e-16!GO:0022618;protein-RNA complex assembly;6.1552474391636e-16!GO:0044432;endoplasmic reticulum part;1.3700719783679e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.83651707744778e-15!GO:0051186;cofactor metabolic process;3.70118875450584e-15!GO:0006464;protein modification process;4.09158588416293e-15!GO:0008134;transcription factor binding;4.56335387521328e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.06051486103498e-15!GO:0044265;cellular macromolecule catabolic process;7.10674922143436e-15!GO:0043285;biopolymer catabolic process;1.44713469789955e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.79541786678373e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.67501303109843e-14!GO:0009057;macromolecule catabolic process;2.77968227985854e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.89201127382152e-14!GO:0003954;NADH dehydrogenase activity;2.89201127382152e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.89201127382152e-14!GO:0008135;translation factor activity, nucleic acid binding;4.72467612779584e-14!GO:0005761;mitochondrial ribosome;1.77963465378167e-13!GO:0000313;organellar ribosome;1.77963465378167e-13!GO:0006974;response to DNA damage stimulus;2.76617650442588e-13!GO:0044248;cellular catabolic process;2.93459602408682e-13!GO:0016192;vesicle-mediated transport;3.12651543797673e-13!GO:0005794;Golgi apparatus;5.23915136290241e-13!GO:0042254;ribosome biogenesis and assembly;6.29441172745528e-13!GO:0043687;post-translational protein modification;8.5831070143482e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.2012370441426e-12!GO:0019941;modification-dependent protein catabolic process;1.51554556638239e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.51554556638239e-12!GO:0051082;unfolded protein binding;1.58822741803026e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.78579851014677e-12!GO:0000375;RNA splicing, via transesterification reactions;1.78579851014677e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.78579851014677e-12!GO:0005635;nuclear envelope;1.86091401210801e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.88529307017426e-12!GO:0045271;respiratory chain complex I;1.88529307017426e-12!GO:0005747;mitochondrial respiratory chain complex I;1.88529307017426e-12!GO:0044257;cellular protein catabolic process;2.11051672875278e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.27651772307345e-12!GO:0030163;protein catabolic process;2.49553563391651e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.77106051369406e-12!GO:0042773;ATP synthesis coupled electron transport;2.77106051369406e-12!GO:0005694;chromosome;4.64947343099455e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.59540871574846e-12!GO:0016887;ATPase activity;6.7467260339359e-12!GO:0042623;ATPase activity, coupled;7.89674834808558e-12!GO:0051276;chromosome organization and biogenesis;9.68166492218546e-12!GO:0031965;nuclear membrane;9.80723776972473e-12!GO:0044427;chromosomal part;1.13533998479955e-11!GO:0022403;cell cycle phase;1.26862020278909e-11!GO:0000087;M phase of mitotic cell cycle;1.29372122180299e-11!GO:0044453;nuclear membrane part;1.30818704027319e-11!GO:0006732;coenzyme metabolic process;1.53715870266263e-11!GO:0007067;mitosis;1.57549244691909e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;2.18720533905832e-11!GO:0048193;Golgi vesicle transport;2.25112616979141e-11!GO:0003743;translation initiation factor activity;2.75518728386528e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.82727122747902e-11!GO:0006913;nucleocytoplasmic transport;3.24226559608079e-11!GO:0012501;programmed cell death;4.69595337650082e-11!GO:0009259;ribonucleotide metabolic process;4.96682040316872e-11!GO:0006163;purine nucleotide metabolic process;5.7503899512887e-11!GO:0006281;DNA repair;5.85827508430675e-11!GO:0006915;apoptosis;6.15542234330406e-11!GO:0006323;DNA packaging;6.22525184411418e-11!GO:0051169;nuclear transport;6.46064364329938e-11!GO:0005789;endoplasmic reticulum membrane;7.82252015593638e-11!GO:0051726;regulation of cell cycle;8.196190809736e-11!GO:0009719;response to endogenous stimulus;9.63627039734895e-11!GO:0009055;electron carrier activity;1.05081045958368e-10!GO:0003712;transcription cofactor activity;1.39469692553301e-10!GO:0006260;DNA replication;1.40342111602606e-10!GO:0009150;purine ribonucleotide metabolic process;1.68129602657036e-10!GO:0000785;chromatin;1.89343523739501e-10!GO:0000074;regulation of progression through cell cycle;2.06577398726771e-10!GO:0006333;chromatin assembly or disassembly;3.23861752164311e-10!GO:0006413;translational initiation;3.55174820199255e-10!GO:0051301;cell division;3.55174820199255e-10!GO:0006164;purine nucleotide biosynthetic process;4.41355557514482e-10!GO:0016604;nuclear body;5.3274770807099e-10!GO:0065004;protein-DNA complex assembly;6.292505651094e-10!GO:0006399;tRNA metabolic process;7.10797799598158e-10!GO:0009260;ribonucleotide biosynthetic process;7.77099267417462e-10!GO:0005643;nuclear pore;8.9501165414891e-10!GO:0008219;cell death;1.07051398770732e-09!GO:0016265;death;1.07051398770732e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.14329091524084e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.30535675951093e-09!GO:0065002;intracellular protein transport across a membrane;1.56720151177377e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.89851492188477e-09!GO:0003676;nucleic acid binding;4.20886968606297e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.62573006282526e-09!GO:0046930;pore complex;4.82747547851236e-09!GO:0017038;protein import;4.98542641549556e-09!GO:0005793;ER-Golgi intermediate compartment;5.19536581101642e-09!GO:0006334;nucleosome assembly;5.91688684986372e-09!GO:0006364;rRNA processing;6.0334973441039e-09!GO:0009141;nucleoside triphosphate metabolic process;6.34107470471112e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.29667508933727e-09!GO:0009056;catabolic process;7.91640219738833e-09!GO:0008639;small protein conjugating enzyme activity;7.91640219738833e-09!GO:0006446;regulation of translational initiation;8.01315637096324e-09!GO:0006793;phosphorus metabolic process;8.62429973464299e-09!GO:0006796;phosphate metabolic process;8.62429973464299e-09!GO:0000279;M phase;9.62616336719684e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.66245481117011e-09!GO:0009144;purine nucleoside triphosphate metabolic process;9.66245481117011e-09!GO:0016072;rRNA metabolic process;1.20593215410848e-08!GO:0031497;chromatin assembly;1.20593215410848e-08!GO:0004842;ubiquitin-protein ligase activity;1.20593215410848e-08!GO:0006461;protein complex assembly;1.26782620827055e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.67039461476788e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.82463306060685e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.82962912977435e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.82962912977435e-08!GO:0019787;small conjugating protein ligase activity;2.15423741483642e-08!GO:0008565;protein transporter activity;2.25666842281815e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.28242189007925e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.28242189007925e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.28242189007925e-08!GO:0048523;negative regulation of cellular process;3.5323153352638e-08!GO:0015986;ATP synthesis coupled proton transport;3.53926730883357e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.53926730883357e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.92760809497612e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.92760809497612e-08!GO:0016740;transferase activity;5.07410756288615e-08!GO:0050657;nucleic acid transport;5.28012136483734e-08!GO:0051236;establishment of RNA localization;5.28012136483734e-08!GO:0050658;RNA transport;5.28012136483734e-08!GO:0006403;RNA localization;5.55840993645462e-08!GO:0051188;cofactor biosynthetic process;6.40816063462755e-08!GO:0046034;ATP metabolic process;6.88670796084723e-08!GO:0009117;nucleotide metabolic process;7.69665752869086e-08!GO:0043038;amino acid activation;8.9277613320636e-08!GO:0006418;tRNA aminoacylation for protein translation;8.9277613320636e-08!GO:0043039;tRNA aminoacylation;8.9277613320636e-08!GO:0015630;microtubule cytoskeleton;9.56115024585148e-08!GO:0016787;hydrolase activity;1.06451394018511e-07!GO:0016491;oxidoreductase activity;1.1765917407729e-07!GO:0019829;cation-transporting ATPase activity;1.43021321258151e-07!GO:0016310;phosphorylation;1.61663127793771e-07!GO:0016881;acid-amino acid ligase activity;2.20534430634685e-07!GO:0006754;ATP biosynthetic process;2.47091436438701e-07!GO:0006753;nucleoside phosphate metabolic process;2.47091436438701e-07!GO:0009060;aerobic respiration;3.16266715380246e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.25171252561127e-07!GO:0008026;ATP-dependent helicase activity;4.14159845624355e-07!GO:0016607;nuclear speck;4.28463098758544e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.44196020274063e-07!GO:0031988;membrane-bound vesicle;4.80477395791249e-07!GO:0005788;endoplasmic reticulum lumen;7.16061210625233e-07!GO:0006366;transcription from RNA polymerase II promoter;7.24895645371683e-07!GO:0004386;helicase activity;7.24895645371683e-07!GO:0048519;negative regulation of biological process;8.6039742268982e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.44354164467898e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.73879807279261e-07!GO:0007005;mitochondrion organization and biogenesis;1.06347365693246e-06!GO:0043067;regulation of programmed cell death;1.09525756947855e-06!GO:0042981;regulation of apoptosis;1.12213788390655e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.2167539818704e-06!GO:0045333;cellular respiration;1.2750725971636e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.66680237049286e-06!GO:0006752;group transfer coenzyme metabolic process;2.31918708696841e-06!GO:0051028;mRNA transport;2.36489281719965e-06!GO:0000786;nucleosome;2.75449483399069e-06!GO:0045259;proton-transporting ATP synthase complex;2.81163044196181e-06!GO:0051170;nuclear import;2.83248110129777e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.27518125540221e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.92849080424827e-06!GO:0032446;protein modification by small protein conjugation;4.05820349397809e-06!GO:0016567;protein ubiquitination;4.25469647569909e-06!GO:0031252;leading edge;4.48941682984786e-06!GO:0009108;coenzyme biosynthetic process;5.08818357751439e-06!GO:0016070;RNA metabolic process;5.08818357751439e-06!GO:0006606;protein import into nucleus;5.25151403236699e-06!GO:0051246;regulation of protein metabolic process;6.84147824854889e-06!GO:0006916;anti-apoptosis;7.37678851190658e-06!GO:0005762;mitochondrial large ribosomal subunit;8.63350850838923e-06!GO:0000315;organellar large ribosomal subunit;8.63350850838923e-06!GO:0045786;negative regulation of progression through cell cycle;9.38094685091326e-06!GO:0005667;transcription factor complex;1.00175571968449e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.05869079634931e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.076346596518e-05!GO:0044431;Golgi apparatus part;1.114904522543e-05!GO:0051329;interphase of mitotic cell cycle;1.15781508623214e-05!GO:0006099;tricarboxylic acid cycle;1.16163847506315e-05!GO:0046356;acetyl-CoA catabolic process;1.16163847506315e-05!GO:0043069;negative regulation of programmed cell death;1.20129590462251e-05!GO:0003714;transcription corepressor activity;1.2859294205931e-05!GO:0005768;endosome;1.28791763738408e-05!GO:0005525;GTP binding;1.33407602876103e-05!GO:0000245;spliceosome assembly;1.37721684771462e-05!GO:0051187;cofactor catabolic process;1.40078115821974e-05!GO:0016568;chromatin modification;1.41019867071227e-05!GO:0031410;cytoplasmic vesicle;1.42127426745445e-05!GO:0005813;centrosome;1.44495606833059e-05!GO:0031982;vesicle;1.54123907089146e-05!GO:0000151;ubiquitin ligase complex;1.58972604737079e-05!GO:0003924;GTPase activity;1.63686661182049e-05!GO:0006084;acetyl-CoA metabolic process;1.71123520821463e-05!GO:0016779;nucleotidyltransferase activity;1.73494311676047e-05!GO:0006091;generation of precursor metabolites and energy;1.81639166746333e-05!GO:0043623;cellular protein complex assembly;1.82218423940206e-05!GO:0043066;negative regulation of apoptosis;1.88783177997145e-05!GO:0003697;single-stranded DNA binding;1.92901460300719e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.0964828054903e-05!GO:0051325;interphase;2.13171483940325e-05!GO:0007010;cytoskeleton organization and biogenesis;2.21322886510144e-05!GO:0019899;enzyme binding;2.29820430084578e-05!GO:0005769;early endosome;2.45390592252134e-05!GO:0019843;rRNA binding;2.455509750258e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.46020653688406e-05!GO:0030120;vesicle coat;2.52689793902214e-05!GO:0030662;coated vesicle membrane;2.52689793902214e-05!GO:0003713;transcription coactivator activity;2.62515561550811e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.77355339594084e-05!GO:0005815;microtubule organizing center;3.11567034455701e-05!GO:0048475;coated membrane;4.1720037836096e-05!GO:0030117;membrane coat;4.1720037836096e-05!GO:0016853;isomerase activity;4.45146981282948e-05!GO:0008047;enzyme activator activity;4.55145092408778e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.05535721245031e-05!GO:0015399;primary active transmembrane transporter activity;5.05535721245031e-05!GO:0009109;coenzyme catabolic process;5.09855716607745e-05!GO:0031968;organelle outer membrane;5.19659800808895e-05!GO:0045454;cell redox homeostasis;5.70429174496818e-05!GO:0016563;transcription activator activity;5.70916204968183e-05!GO:0065009;regulation of a molecular function;6.24028051686836e-05!GO:0019867;outer membrane;6.40428598521642e-05!GO:0009165;nucleotide biosynthetic process;6.89783412243218e-05!GO:0030867;rough endoplasmic reticulum membrane;7.90259148434694e-05!GO:0007264;small GTPase mediated signal transduction;8.5632646978072e-05!GO:0005819;spindle;8.61207518020893e-05!GO:0003724;RNA helicase activity;9.13959218796393e-05!GO:0044440;endosomal part;9.51013747276008e-05!GO:0010008;endosome membrane;9.51013747276008e-05!GO:0030029;actin filament-based process;0.000100170414609832!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000110139658774588!GO:0005096;GTPase activator activity;0.000120973742669828!GO:0008654;phospholipid biosynthetic process;0.000124581203289779!GO:0032561;guanyl ribonucleotide binding;0.000124581203289779!GO:0019001;guanyl nucleotide binding;0.000124581203289779!GO:0000139;Golgi membrane;0.000143984209855219!GO:0051087;chaperone binding;0.000147898696112025!GO:0016564;transcription repressor activity;0.000147898696112025!GO:0004298;threonine endopeptidase activity;0.000147898696112025!GO:0033116;ER-Golgi intermediate compartment membrane;0.000147898696112025!GO:0042802;identical protein binding;0.000163865251648356!GO:0016044;membrane organization and biogenesis;0.000169883835845443!GO:0005741;mitochondrial outer membrane;0.000181933254524264!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0002089315629622!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000224209652470633!GO:0008632;apoptotic program;0.000268737543279981!GO:0005770;late endosome;0.00027130880606269!GO:0043566;structure-specific DNA binding;0.000279052821924526!GO:0003899;DNA-directed RNA polymerase activity;0.000299754157093959!GO:0006613;cotranslational protein targeting to membrane;0.000308287296742802!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000316372868325367!GO:0005905;coated pit;0.000362954902358078!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000364888826347532!GO:0043681;protein import into mitochondrion;0.000380138956599457!GO:0051168;nuclear export;0.000390434808664996!GO:0051427;hormone receptor binding;0.000390434808664996!GO:0016859;cis-trans isomerase activity;0.000396697132380318!GO:0043492;ATPase activity, coupled to movement of substances;0.00039863427693545!GO:0007243;protein kinase cascade;0.0004148422592926!GO:0048522;positive regulation of cellular process;0.000433550082170564!GO:0000314;organellar small ribosomal subunit;0.000455233054750552!GO:0005763;mitochondrial small ribosomal subunit;0.000455233054750552!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000461160259200397!GO:0048471;perinuclear region of cytoplasm;0.000498959999698598!GO:0000059;protein import into nucleus, docking;0.000503965156932598!GO:0015992;proton transport;0.000557672640964051!GO:0005885;Arp2/3 protein complex;0.000602185170940338!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000612321861669437!GO:0006818;hydrogen transport;0.000622033424403941!GO:0051789;response to protein stimulus;0.000628346126354409!GO:0006986;response to unfolded protein;0.000628346126354409!GO:0007006;mitochondrial membrane organization and biogenesis;0.000650406179822599!GO:0005048;signal sequence binding;0.000669963231039002!GO:0006626;protein targeting to mitochondrion;0.000698897493637395!GO:0003684;damaged DNA binding;0.000774698114187961!GO:0035257;nuclear hormone receptor binding;0.000790542255067838!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000811687752474301!GO:0008186;RNA-dependent ATPase activity;0.000812758923975047!GO:0006414;translational elongation;0.000914063829732486!GO:0015980;energy derivation by oxidation of organic compounds;0.000915381052927155!GO:0051920;peroxiredoxin activity;0.000915381052927155!GO:0007265;Ras protein signal transduction;0.000934603673985615!GO:0050794;regulation of cellular process;0.000972908351031538!GO:0008092;cytoskeletal protein binding;0.000994762821526403!GO:0006950;response to stress;0.00109073368496155!GO:0008250;oligosaccharyl transferase complex;0.00113340245821981!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00116244187639028!GO:0044452;nucleolar part;0.00116383077763269!GO:0030880;RNA polymerase complex;0.00118273790499238!GO:0004576;oligosaccharyl transferase activity;0.00128265533113085!GO:0006839;mitochondrial transport;0.00131544529588275!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0013224764118023!GO:0005798;Golgi-associated vesicle;0.00136661870994363!GO:0005773;vacuole;0.00145200158478534!GO:0008033;tRNA processing;0.001459905813613!GO:0008094;DNA-dependent ATPase activity;0.00149225397574918!GO:0006261;DNA-dependent DNA replication;0.00165922996408808!GO:0030695;GTPase regulator activity;0.00165922996408808!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00165922996408808!GO:0043021;ribonucleoprotein binding;0.00177319062422454!GO:0006612;protein targeting to membrane;0.00190108167495417!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00201924937095279!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00201924937095279!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00201924937095279!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00205191859776322!GO:0004004;ATP-dependent RNA helicase activity;0.00210547473906337!GO:0007242;intracellular signaling cascade;0.00222290609375833!GO:0006082;organic acid metabolic process;0.00229805831168802!GO:0016126;sterol biosynthetic process;0.00230110457531015!GO:0008361;regulation of cell size;0.00252962482171379!GO:0044262;cellular carbohydrate metabolic process;0.00252962482171379!GO:0030659;cytoplasmic vesicle membrane;0.00263581496460924!GO:0007051;spindle organization and biogenesis;0.00281216695035938!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00286413702991976!GO:0000428;DNA-directed RNA polymerase complex;0.00286413702991976!GO:0019752;carboxylic acid metabolic process;0.00289585060592766!GO:0050790;regulation of catalytic activity;0.00297214137382!GO:0018196;peptidyl-asparagine modification;0.00298066804626278!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00298066804626278!GO:0031072;heat shock protein binding;0.00305523176277478!GO:0005874;microtubule;0.00309046544309015!GO:0051252;regulation of RNA metabolic process;0.00319154819348824!GO:0016301;kinase activity;0.00324980844265254!GO:0006383;transcription from RNA polymerase III promoter;0.00324980844265254!GO:0043284;biopolymer biosynthetic process;0.00325907402110207!GO:0000775;chromosome, pericentric region;0.00327834089479006!GO:0016049;cell growth;0.00336749666979797!GO:0006695;cholesterol biosynthetic process;0.00338769511329286!GO:0017166;vinculin binding;0.00356177498062745!GO:0015631;tubulin binding;0.0037433313677648!GO:0031324;negative regulation of cellular metabolic process;0.00378916234170407!GO:0006401;RNA catabolic process;0.00380278993082237!GO:0003729;mRNA binding;0.00380971344696979!GO:0006289;nucleotide-excision repair;0.00381283761501544!GO:0050662;coenzyme binding;0.00381410350752206!GO:0022890;inorganic cation transmembrane transporter activity;0.0038480710728168!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00402917485567216!GO:0016363;nuclear matrix;0.00416613348300513!GO:0001558;regulation of cell growth;0.00417377849911805!GO:0048487;beta-tubulin binding;0.00460005851022239!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00467880920936322!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00467880920936322!GO:0005684;U2-dependent spliceosome;0.00489854631839174!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00518252809457127!GO:0006402;mRNA catabolic process;0.00533463202029615!GO:0043488;regulation of mRNA stability;0.00550737350877685!GO:0043487;regulation of RNA stability;0.00550737350877685!GO:0032508;DNA duplex unwinding;0.00550737350877685!GO:0032392;DNA geometric change;0.00550737350877685!GO:0044433;cytoplasmic vesicle part;0.0058139186538582!GO:0000082;G1/S transition of mitotic cell cycle;0.00592520341590165!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0060895003917492!GO:0006284;base-excision repair;0.00612259081544097!GO:0008139;nuclear localization sequence binding;0.00623635633906046!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00626765525029701!GO:0005083;small GTPase regulator activity;0.00647560080722335!GO:0006897;endocytosis;0.00648497758911563!GO:0010324;membrane invagination;0.00648497758911563!GO:0006778;porphyrin metabolic process;0.0065220386012596!GO:0033013;tetrapyrrole metabolic process;0.0065220386012596!GO:0005791;rough endoplasmic reticulum;0.00653880400070753!GO:0007088;regulation of mitosis;0.00684876319204661!GO:0030041;actin filament polymerization;0.00715607328922487!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00715607328922487!GO:0015002;heme-copper terminal oxidase activity;0.00715607328922487!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00715607328922487!GO:0004129;cytochrome-c oxidase activity;0.00715607328922487!GO:0004674;protein serine/threonine kinase activity;0.00722209794688797!GO:0006611;protein export from nucleus;0.00727355717223869!GO:0046483;heterocycle metabolic process;0.00788222688716866!GO:0003746;translation elongation factor activity;0.00793721482859362!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00820006812860601!GO:0006268;DNA unwinding during replication;0.00845957853517716!GO:0006352;transcription initiation;0.00849396080869042!GO:0000323;lytic vacuole;0.00856347690564341!GO:0005764;lysosome;0.00856347690564341!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00861943982623399!GO:0016197;endosome transport;0.00862764880199941!GO:0006595;polyamine metabolic process;0.00867465508378976!GO:0035258;steroid hormone receptor binding;0.00870290906745333!GO:0030132;clathrin coat of coated pit;0.00884177806948996!GO:0006520;amino acid metabolic process;0.00884782325070637!GO:0006118;electron transport;0.0090326858126445!GO:0030027;lamellipodium;0.0090326858126445!GO:0007266;Rho protein signal transduction;0.00913710887597103!GO:0015036;disulfide oxidoreductase activity;0.00920428630185017!GO:0008610;lipid biosynthetic process;0.00975318957315097!GO:0006405;RNA export from nucleus;0.0100339970109751!GO:0006509;membrane protein ectodomain proteolysis;0.0102880477432417!GO:0033619;membrane protein proteolysis;0.0102880477432417!GO:0051101;regulation of DNA binding;0.0104882507055305!GO:0006919;caspase activation;0.0105553084254135!GO:0030658;transport vesicle membrane;0.0107779855767104!GO:0046467;membrane lipid biosynthetic process;0.0110724569570795!GO:0051287;NAD binding;0.0114230736572224!GO:0006740;NADPH regeneration;0.0114536541876123!GO:0006098;pentose-phosphate shunt;0.0114536541876123!GO:0009892;negative regulation of metabolic process;0.0114954689456457!GO:0031901;early endosome membrane;0.0118910359571475!GO:0004518;nuclease activity;0.0121162599219307!GO:0000075;cell cycle checkpoint;0.0121260652620134!GO:0003682;chromatin binding;0.0123825176568609!GO:0042168;heme metabolic process;0.0123825176568609!GO:0043281;regulation of caspase activity;0.0125139735596079!GO:0006891;intra-Golgi vesicle-mediated transport;0.0125495195893958!GO:0046474;glycerophospholipid biosynthetic process;0.012698762921269!GO:0008180;signalosome;0.0128065589915429!GO:0045045;secretory pathway;0.012839979745067!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.013492809129902!GO:0007040;lysosome organization and biogenesis;0.0140260025531485!GO:0007050;cell cycle arrest;0.0140941634797271!GO:0003678;DNA helicase activity;0.0141026062906209!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0145278158572786!GO:0005832;chaperonin-containing T-complex;0.0149135401756827!GO:0012506;vesicle membrane;0.0151028885938822!GO:0045941;positive regulation of transcription;0.0155595121519441!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0173349649476344!GO:0016311;dephosphorylation;0.0173491484072646!GO:0030521;androgen receptor signaling pathway;0.0178039455167622!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0178388778562242!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0184519267760863!GO:0005862;muscle thin filament tropomyosin;0.0184749967637002!GO:0006979;response to oxidative stress;0.0186233436578407!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0186991434922006!GO:0004177;aminopeptidase activity;0.0187794536619195!GO:0030133;transport vesicle;0.0190351263810957!GO:0000049;tRNA binding;0.0190925011774206!GO:0006007;glucose catabolic process;0.019330826469089!GO:0005637;nuclear inner membrane;0.0194167915817621!GO:0005869;dynactin complex;0.0196078387505647!GO:0048518;positive regulation of biological process;0.0199276030443263!GO:0000096;sulfur amino acid metabolic process;0.0205532750792022!GO:0007017;microtubule-based process;0.0210857643301787!GO:0030833;regulation of actin filament polymerization;0.0215148427693857!GO:0048660;regulation of smooth muscle cell proliferation;0.0218686031870461!GO:0007346;regulation of progression through mitotic cell cycle;0.0218686031870461!GO:0006310;DNA recombination;0.0219527205140198!GO:0045893;positive regulation of transcription, DNA-dependent;0.0220048824843075!GO:0016584;nucleosome positioning;0.0223492884033468!GO:0030118;clathrin coat;0.0224957090041258!GO:0030660;Golgi-associated vesicle membrane;0.0225725940173119!GO:0004527;exonuclease activity;0.0225725940173119!GO:0003711;transcription elongation regulator activity;0.0228420543306435!GO:0005774;vacuolar membrane;0.0231966159432454!GO:0005092;GDP-dissociation inhibitor activity;0.0231966159432454!GO:0006779;porphyrin biosynthetic process;0.0231966159432454!GO:0033014;tetrapyrrole biosynthetic process;0.0231966159432454!GO:0030176;integral to endoplasmic reticulum membrane;0.0236624716606538!GO:0040008;regulation of growth;0.0242666699584054!GO:0051098;regulation of binding;0.0243973989854795!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0251413003534369!GO:0016791;phosphoric monoester hydrolase activity;0.0252542685270765!GO:0001726;ruffle;0.025567660926194!GO:0008283;cell proliferation;0.0256594986028351!GO:0030134;ER to Golgi transport vesicle;0.0258948478425879!GO:0000209;protein polyubiquitination;0.0259513696672196!GO:0004197;cysteine-type endopeptidase activity;0.026255196871061!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0263785342541776!GO:0000910;cytokinesis;0.0266123884484564!GO:0008022;protein C-terminus binding;0.0266788566441976!GO:0030127;COPII vesicle coat;0.0268705422032952!GO:0012507;ER to Golgi transport vesicle membrane;0.0268705422032952!GO:0006302;double-strand break repair;0.0271617456978388!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0278531838759369!GO:0003756;protein disulfide isomerase activity;0.0283637152668021!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0283637152668021!GO:0006807;nitrogen compound metabolic process;0.0284907538339996!GO:0007021;tubulin folding;0.0284972822217424!GO:0043022;ribosome binding;0.0285673029108144!GO:0043189;H4/H2A histone acetyltransferase complex;0.0294602389341318!GO:0008154;actin polymerization and/or depolymerization;0.0294874550600899!GO:0006144;purine base metabolic process;0.0295033915238267!GO:0042393;histone binding;0.0297249264190698!GO:0009116;nucleoside metabolic process;0.030105057960861!GO:0047485;protein N-terminus binding;0.0302407610395062!GO:0030663;COPI coated vesicle membrane;0.0302701789481188!GO:0030126;COPI vesicle coat;0.0302701789481188!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0310418639883075!GO:0033559;unsaturated fatty acid metabolic process;0.0310648237698136!GO:0006636;unsaturated fatty acid biosynthetic process;0.0310648237698136!GO:0000287;magnesium ion binding;0.0315763330058649!GO:0022408;negative regulation of cell-cell adhesion;0.0318742925466476!GO:0001568;blood vessel development;0.031934822220272!GO:0016272;prefoldin complex;0.0321242240966979!GO:0005657;replication fork;0.0321677023753002!GO:0008538;proteasome activator activity;0.0323568760482822!GO:0006338;chromatin remodeling;0.0324144754927507!GO:0009124;nucleoside monophosphate biosynthetic process;0.0324144754927507!GO:0009123;nucleoside monophosphate metabolic process;0.0324144754927507!GO:0035267;NuA4 histone acetyltransferase complex;0.0324916217278138!GO:0046489;phosphoinositide biosynthetic process;0.0326420874142002!GO:0030137;COPI-coated vesicle;0.0330646504490498!GO:0030145;manganese ion binding;0.0336748805589304!GO:0000178;exosome (RNase complex);0.0340443516559961!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0340443516559961!GO:0010257;NADH dehydrogenase complex assembly;0.0340443516559961!GO:0033108;mitochondrial respiratory chain complex assembly;0.0340443516559961!GO:0046822;regulation of nucleocytoplasmic transport;0.0341953124217519!GO:0009967;positive regulation of signal transduction;0.0343440429644957!GO:0048037;cofactor binding;0.0346167541328974!GO:0016741;transferase activity, transferring one-carbon groups;0.0353149167510011!GO:0005099;Ras GTPase activator activity;0.0353569633249352!GO:0008637;apoptotic mitochondrial changes;0.0354948359205089!GO:0007033;vacuole organization and biogenesis;0.0355362417648316!GO:0031272;regulation of pseudopodium formation;0.0355362417648316!GO:0031269;pseudopodium formation;0.0355362417648316!GO:0031344;regulation of cell projection organization and biogenesis;0.0355362417648316!GO:0031268;pseudopodium organization and biogenesis;0.0355362417648316!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0355362417648316!GO:0031274;positive regulation of pseudopodium formation;0.0355362417648316!GO:0016481;negative regulation of transcription;0.0355362417648316!GO:0031124;mRNA 3'-end processing;0.0361466038912633!GO:0030518;steroid hormone receptor signaling pathway;0.0361623426864223!GO:0000922;spindle pole;0.0363086925440815!GO:0000339;RNA cap binding;0.0363086925440815!GO:0031529;ruffle organization and biogenesis;0.0364403534253574!GO:0035035;histone acetyltransferase binding;0.0371631635480517!GO:0006354;RNA elongation;0.038038196045148!GO:0008168;methyltransferase activity;0.0380843980717533!GO:0050789;regulation of biological process;0.0381329691464981!GO:0031902;late endosome membrane;0.0383772710764422!GO:0006739;NADP metabolic process;0.0384227334582539!GO:0019904;protein domain specific binding;0.0386174189017906!GO:0005784;translocon complex;0.0387188058998583!GO:0048500;signal recognition particle;0.0391616670425155!GO:0044437;vacuolar part;0.0392444983248663!GO:0043280;positive regulation of caspase activity;0.0402145196245651!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0403385925259659!GO:0048468;cell development;0.0403857900391299!GO:0009112;nucleobase metabolic process;0.0405936173344974!GO:0043086;negative regulation of catalytic activity;0.0406003989421812!GO:0046426;negative regulation of JAK-STAT cascade;0.0407780416159551!GO:0051539;4 iron, 4 sulfur cluster binding;0.040884942938591!GO:0051540;metal cluster binding;0.040896235749532!GO:0051536;iron-sulfur cluster binding;0.040896235749532!GO:0045792;negative regulation of cell size;0.040896235749532!GO:0016408;C-acyltransferase activity;0.0410257242261044!GO:0008312;7S RNA binding;0.0410257242261044!GO:0006519;amino acid and derivative metabolic process;0.0417204571053042!GO:0030911;TPR domain binding;0.041756512335659!GO:0006783;heme biosynthetic process;0.0418406283966314!GO:0022415;viral reproductive process;0.0419284436096636!GO:0046519;sphingoid metabolic process;0.0421993504022878!GO:0050178;phenylpyruvate tautomerase activity;0.0421993504022878!GO:0000118;histone deacetylase complex;0.0424089112019374!GO:0043433;negative regulation of transcription factor activity;0.0424771088920826!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0425070859888712!GO:0030433;ER-associated protein catabolic process;0.0434930158921997!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0434930158921997!GO:0019206;nucleoside kinase activity;0.0442776770455574!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0442776770455574!GO:0048659;smooth muscle cell proliferation;0.044997038058907!GO:0006892;post-Golgi vesicle-mediated transport;0.0454551188532702!GO:0004003;ATP-dependent DNA helicase activity;0.0454551188532702!GO:0009966;regulation of signal transduction;0.0456306352983691!GO:0001944;vasculature development;0.0456306352983691!GO:0008017;microtubule binding;0.0457735175592535!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0458679151049371!GO:0005652;nuclear lamina;0.045971842398024!GO:0043414;biopolymer methylation;0.045971842398024!GO:0033673;negative regulation of kinase activity;0.0463013037877939!GO:0006469;negative regulation of protein kinase activity;0.0463013037877939!GO:0030308;negative regulation of cell growth;0.0463947925357777!GO:0005680;anaphase-promoting complex;0.0470184433207306!GO:0042987;amyloid precursor protein catabolic process;0.0477560010434589!GO:0000123;histone acetyltransferase complex;0.0483618553289004!GO:0009303;rRNA transcription;0.0488867754770993 | |||
|sample_id=11267 | |sample_id=11267 | ||
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | |sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | ||
| Line 76: | Line 105: | ||
|sample_tissue=vein | |sample_tissue=vein | ||
|top_motifs=SOX{8,9,10}:2.19434746929;POU2F1..3:1.66698098654;GATA6:1.35337684255;SOX2:1.31092441609;LEF1_TCF7_TCF7L1,2:1.08882063779;RXR{A,B,G}:1.05125572633;GTF2A1,2:1.00070713497;PAX1,9:0.99448885607;AR:0.967815038334;SOX17:0.962599954548;TFAP2{A,C}:0.954931982069;TFDP1:0.925524621807;PBX1:0.884402409163;TLX1..3_NFIC{dimer}:0.876239676763;FOX{I1,J2}:0.866219329356;ALX1:0.843382730059;XCPE1{core}:0.783143526315;EN1,2:0.773179680076;ETS1,2:0.747761648706;TBP:0.676034264889;HES1:0.639312777668;NR5A1,2:0.631832801499;TFAP4:0.626842837265;PPARG:0.604770183225;PAX6:0.57844853508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.549995899334;NFE2:0.546291605259;BACH2:0.545632792987;GFI1B:0.530673713762;PAX8:0.528368978725;NFATC1..3:0.525767664782;NKX2-3_NKX2-5:0.521031980674;RORA:0.513894949311;GFI1:0.502305777704;HAND1,2:0.498105825793;SPIB:0.469798439954;STAT5{A,B}:0.468678192228;LHX3,4:0.465356740329;NANOG:0.461634749203;MYB:0.430686543204;ZNF423:0.420805217796;ELF1,2,4:0.41932818206;TP53:0.419279772861;HOX{A5,B5}:0.417912645889;bHLH_family:0.413850727151;HBP1_HMGB_SSRP1_UBTF:0.407676890466;NR3C1:0.403555935199;HIC1:0.391813153516;NANOG{mouse}:0.38980017791;IKZF1:0.350560719469;FOS_FOS{B,L1}_JUN{B,D}:0.345126172192;POU1F1:0.339930583494;IKZF2:0.336065114753;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.332680976037;NFY{A,B,C}:0.31842629062;SOX5:0.31818895919;ONECUT1,2:0.312444959023;GLI1..3:0.296595324626;E2F1..5:0.268291329301;REST:0.259277565014;GZF1:0.246490015003;ZNF238:0.240384062392;ZNF148:0.191085293753;TEAD1:0.181102373456;PAX5:0.172827737642;FOSL2:0.140543553282;ZFP161:0.119328327032;FOXQ1:0.0958034700389;HNF4A_NR2F1,2:0.0854232001431;TFAP2B:0.0791282960851;CRX:0.076388645473;ADNP_IRX_SIX_ZHX:0.0471133279234;NFE2L2:0.0296549339869;ZNF143:0.0118552544261;MEF2{A,B,C,D}:-0.0129070973332;ESRRA:-0.0519037182121;MYOD1:-0.0527595512201;POU6F1:-0.0543881309591;OCT4_SOX2{dimer}:-0.0657256983462;SPZ1:-0.0719581229924;TAL1_TCF{3,4,12}:-0.0738954732805;SP1:-0.0823291933098;SRF:-0.0825803333686;LMO2:-0.08411365792;POU3F1..4:-0.0847411557128;YY1:-0.100688205872;NRF1:-0.119398450533;PRRX1,2:-0.148100856858;CUX2:-0.155172736155;NFE2L1:-0.155701658051;PAX3,7:-0.157237355538;ATF2:-0.158929330214;TFCP2:-0.182295213645;SPI1:-0.184274106223;GCM1,2:-0.185194897639;STAT2,4,6:-0.185887888065;HNF1A:-0.199643910025;FOXA2:-0.219173981792;ARID5B:-0.236570111123;NHLH1,2:-0.258238775483;PAX2:-0.260444544583;FOXL1:-0.266682436666;GTF2I:-0.28176530071;MTF1:-0.285956106975;CREB1:-0.302250055777;EGR1..3:-0.323386695719;MED-1{core}:-0.345400860837;ATF6:-0.350802802756;NFKB1_REL_RELA:-0.369549092784;PITX1..3:-0.393232132554;CDC5L:-0.402359157669;RUNX1..3:-0.427915349679;XBP1:-0.436611916004;HOXA9_MEIS1:-0.441656619597;PAX4:-0.449011178276;VSX1,2:-0.454212660523;MTE{core}:-0.455709392698;JUN:-0.456950180048;SMAD1..7,9:-0.457260741019;HLF:-0.466982298282;BREu{core}:-0.476412621489;CEBPA,B_DDIT3:-0.500403584999;ZBTB6:-0.504330393436;RFX1:-0.509096802873;PATZ1:-0.519833015399;FOX{F1,F2,J1}:-0.547720847362;PDX1:-0.552581942413;MZF1:-0.553356089761;HIF1A:-0.566024456098;ZIC1..3:-0.573408958211;FOXM1:-0.580442728323;EBF1:-0.585178726923;MAZ:-0.611422078832;HMX1:-0.635404988199;UFEwm:-0.651846556167;T:-0.652349304889;NFIL3:-0.670476779138;ATF4:-0.671316103918;SREBF1,2:-0.676695446058;AIRE:-0.690334443898;POU5F1:-0.696423604527;GATA4:-0.700287668756;KLF4:-0.703815094792;RREB1:-0.708658432013;HSF1,2:-0.741114626654;FOXN1:-0.743852915264;SNAI1..3:-0.74798080136;TOPORS:-0.755028308757;ESR1:-0.757037392616;NR1H4:-0.777877774077;TGIF1:-0.790619518793;NFIX:-0.791300928962;STAT1,3:-0.812378034685;DMAP1_NCOR{1,2}_SMARC:-0.819919470323;TEF:-0.822461025251;RBPJ:-0.826895537437;ATF5_CREB3:-0.842845791916;ELK1,4_GABP{A,B1}:-0.848570658146;NKX3-2:-0.864527637276;ZEB1:-0.86696333002;FOXP3:-0.892650072048;MAFB:-0.899257198853;DBP:-0.944048093322;RXRA_VDR{dimer}:-0.948121983644;PRDM1:-1.00667358723;ZBTB16:-1.01102261139;MYFfamily:-1.02355859221;IRF1,2:-1.0681797258;AHR_ARNT_ARNT2:-1.06888772657;MYBL2:-1.07271170896;FOXD3:-1.08399542624;FOX{D1,D2}:-1.10447342413;BPTF:-1.11111132355;RFX2..5_RFXANK_RFXAP:-1.13926713874;IRF7:-1.17409246837;ALX4:-1.21316613846;EP300:-1.23899100483;HOX{A6,A7,B6,B7}:-1.25929367512;TBX4,5:-1.28443967898;NKX2-2,8:-1.29648659682;NR6A1:-1.29748003004;TLX2:-1.34081931572;EVI1:-1.34385172878;ZNF384:-1.41954266528;HOX{A4,D4}:-1.42208329043;NKX3-1:-1.54418902119;HMGA1,2:-1.54994963253;FOXO1,3,4:-1.56073137673;FOXP1:-1.76488198048;NKX2-1,4:-1.77543496566;NKX6-1,2:-1.80453115765;CDX1,2,4:-1.96053242206 | |top_motifs=SOX{8,9,10}:2.19434746929;POU2F1..3:1.66698098654;GATA6:1.35337684255;SOX2:1.31092441609;LEF1_TCF7_TCF7L1,2:1.08882063779;RXR{A,B,G}:1.05125572633;GTF2A1,2:1.00070713497;PAX1,9:0.99448885607;AR:0.967815038334;SOX17:0.962599954548;TFAP2{A,C}:0.954931982069;TFDP1:0.925524621807;PBX1:0.884402409163;TLX1..3_NFIC{dimer}:0.876239676763;FOX{I1,J2}:0.866219329356;ALX1:0.843382730059;XCPE1{core}:0.783143526315;EN1,2:0.773179680076;ETS1,2:0.747761648706;TBP:0.676034264889;HES1:0.639312777668;NR5A1,2:0.631832801499;TFAP4:0.626842837265;PPARG:0.604770183225;PAX6:0.57844853508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.549995899334;NFE2:0.546291605259;BACH2:0.545632792987;GFI1B:0.530673713762;PAX8:0.528368978725;NFATC1..3:0.525767664782;NKX2-3_NKX2-5:0.521031980674;RORA:0.513894949311;GFI1:0.502305777704;HAND1,2:0.498105825793;SPIB:0.469798439954;STAT5{A,B}:0.468678192228;LHX3,4:0.465356740329;NANOG:0.461634749203;MYB:0.430686543204;ZNF423:0.420805217796;ELF1,2,4:0.41932818206;TP53:0.419279772861;HOX{A5,B5}:0.417912645889;bHLH_family:0.413850727151;HBP1_HMGB_SSRP1_UBTF:0.407676890466;NR3C1:0.403555935199;HIC1:0.391813153516;NANOG{mouse}:0.38980017791;IKZF1:0.350560719469;FOS_FOS{B,L1}_JUN{B,D}:0.345126172192;POU1F1:0.339930583494;IKZF2:0.336065114753;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.332680976037;NFY{A,B,C}:0.31842629062;SOX5:0.31818895919;ONECUT1,2:0.312444959023;GLI1..3:0.296595324626;E2F1..5:0.268291329301;REST:0.259277565014;GZF1:0.246490015003;ZNF238:0.240384062392;ZNF148:0.191085293753;TEAD1:0.181102373456;PAX5:0.172827737642;FOSL2:0.140543553282;ZFP161:0.119328327032;FOXQ1:0.0958034700389;HNF4A_NR2F1,2:0.0854232001431;TFAP2B:0.0791282960851;CRX:0.076388645473;ADNP_IRX_SIX_ZHX:0.0471133279234;NFE2L2:0.0296549339869;ZNF143:0.0118552544261;MEF2{A,B,C,D}:-0.0129070973332;ESRRA:-0.0519037182121;MYOD1:-0.0527595512201;POU6F1:-0.0543881309591;OCT4_SOX2{dimer}:-0.0657256983462;SPZ1:-0.0719581229924;TAL1_TCF{3,4,12}:-0.0738954732805;SP1:-0.0823291933098;SRF:-0.0825803333686;LMO2:-0.08411365792;POU3F1..4:-0.0847411557128;YY1:-0.100688205872;NRF1:-0.119398450533;PRRX1,2:-0.148100856858;CUX2:-0.155172736155;NFE2L1:-0.155701658051;PAX3,7:-0.157237355538;ATF2:-0.158929330214;TFCP2:-0.182295213645;SPI1:-0.184274106223;GCM1,2:-0.185194897639;STAT2,4,6:-0.185887888065;HNF1A:-0.199643910025;FOXA2:-0.219173981792;ARID5B:-0.236570111123;NHLH1,2:-0.258238775483;PAX2:-0.260444544583;FOXL1:-0.266682436666;GTF2I:-0.28176530071;MTF1:-0.285956106975;CREB1:-0.302250055777;EGR1..3:-0.323386695719;MED-1{core}:-0.345400860837;ATF6:-0.350802802756;NFKB1_REL_RELA:-0.369549092784;PITX1..3:-0.393232132554;CDC5L:-0.402359157669;RUNX1..3:-0.427915349679;XBP1:-0.436611916004;HOXA9_MEIS1:-0.441656619597;PAX4:-0.449011178276;VSX1,2:-0.454212660523;MTE{core}:-0.455709392698;JUN:-0.456950180048;SMAD1..7,9:-0.457260741019;HLF:-0.466982298282;BREu{core}:-0.476412621489;CEBPA,B_DDIT3:-0.500403584999;ZBTB6:-0.504330393436;RFX1:-0.509096802873;PATZ1:-0.519833015399;FOX{F1,F2,J1}:-0.547720847362;PDX1:-0.552581942413;MZF1:-0.553356089761;HIF1A:-0.566024456098;ZIC1..3:-0.573408958211;FOXM1:-0.580442728323;EBF1:-0.585178726923;MAZ:-0.611422078832;HMX1:-0.635404988199;UFEwm:-0.651846556167;T:-0.652349304889;NFIL3:-0.670476779138;ATF4:-0.671316103918;SREBF1,2:-0.676695446058;AIRE:-0.690334443898;POU5F1:-0.696423604527;GATA4:-0.700287668756;KLF4:-0.703815094792;RREB1:-0.708658432013;HSF1,2:-0.741114626654;FOXN1:-0.743852915264;SNAI1..3:-0.74798080136;TOPORS:-0.755028308757;ESR1:-0.757037392616;NR1H4:-0.777877774077;TGIF1:-0.790619518793;NFIX:-0.791300928962;STAT1,3:-0.812378034685;DMAP1_NCOR{1,2}_SMARC:-0.819919470323;TEF:-0.822461025251;RBPJ:-0.826895537437;ATF5_CREB3:-0.842845791916;ELK1,4_GABP{A,B1}:-0.848570658146;NKX3-2:-0.864527637276;ZEB1:-0.86696333002;FOXP3:-0.892650072048;MAFB:-0.899257198853;DBP:-0.944048093322;RXRA_VDR{dimer}:-0.948121983644;PRDM1:-1.00667358723;ZBTB16:-1.01102261139;MYFfamily:-1.02355859221;IRF1,2:-1.0681797258;AHR_ARNT_ARNT2:-1.06888772657;MYBL2:-1.07271170896;FOXD3:-1.08399542624;FOX{D1,D2}:-1.10447342413;BPTF:-1.11111132355;RFX2..5_RFXANK_RFXAP:-1.13926713874;IRF7:-1.17409246837;ALX4:-1.21316613846;EP300:-1.23899100483;HOX{A6,A7,B6,B7}:-1.25929367512;TBX4,5:-1.28443967898;NKX2-2,8:-1.29648659682;NR6A1:-1.29748003004;TLX2:-1.34081931572;EVI1:-1.34385172878;ZNF384:-1.41954266528;HOX{A4,D4}:-1.42208329043;NKX3-1:-1.54418902119;HMGA1,2:-1.54994963253;FOXO1,3,4:-1.56073137673;FOXP1:-1.76488198048;NKX2-1,4:-1.77543496566;NKX6-1,2:-1.80453115765;CDX1,2,4:-1.96053242206 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11267-116G7;search_select_hide=table117:FF:11267-116G7 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Endothelial Cells - Vein, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12497 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12497
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12497
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.916 |
| 10 | 10 | 0.323 |
| 100 | 100 | 0.169 |
| 101 | 101 | 0.15 |
| 102 | 102 | 0.619 |
| 103 | 103 | 0.991 |
| 104 | 104 | 0.717 |
| 105 | 105 | 0.548 |
| 106 | 106 | 0.837 |
| 107 | 107 | 0.221 |
| 108 | 108 | 0.895 |
| 109 | 109 | 0.0281 |
| 11 | 11 | 0.119 |
| 110 | 110 | 0.0232 |
| 111 | 111 | 0.711 |
| 112 | 112 | 0.252 |
| 113 | 113 | 0.485 |
| 114 | 114 | 0.57 |
| 115 | 115 | 0.919 |
| 116 | 116 | 0.799 |
| 117 | 117 | 0.3 |
| 118 | 118 | 0.894 |
| 119 | 119 | 0.669 |
| 12 | 12 | 0.073 |
| 120 | 120 | 0.0446 |
| 121 | 121 | 0.997 |
| 122 | 122 | 0.522 |
| 123 | 123 | 0.0147 |
| 124 | 124 | 0.419 |
| 125 | 125 | 0.615 |
| 126 | 126 | 0.422 |
| 127 | 127 | 0.512 |
| 128 | 128 | 0.921 |
| 129 | 129 | 0.597 |
| 13 | 13 | 0.153 |
| 130 | 130 | 0.105 |
| 131 | 131 | 0.551 |
| 132 | 132 | 0.479 |
| 133 | 133 | 0.33 |
| 134 | 134 | 0.535 |
| 135 | 135 | 0.188 |
| 136 | 136 | 0.129 |
| 137 | 137 | 0.294 |
| 138 | 138 | 0.913 |
| 139 | 139 | 0.661 |
| 14 | 14 | 0.532 |
| 140 | 140 | 0.435 |
| 141 | 141 | 0.627 |
| 142 | 142 | 0.978 |
| 143 | 143 | 0.156 |
| 144 | 144 | 0.213 |
| 145 | 145 | 0.238 |
| 146 | 146 | 0.0974 |
| 147 | 147 | 0.185 |
| 148 | 148 | 0.135 |
| 149 | 149 | 0.391 |
| 15 | 15 | 0.725 |
| 150 | 150 | 0.053 |
| 151 | 151 | 0.841 |
| 152 | 152 | 0.103 |
| 153 | 153 | 0.1 |
| 154 | 154 | 0.0926 |
| 155 | 155 | 0.926 |
| 156 | 156 | 0.439 |
| 157 | 157 | 0.369 |
| 158 | 158 | 0.451 |
| 159 | 159 | 0.819 |
| 16 | 16 | 0.946 |
| 160 | 160 | 0.0952 |
| 161 | 161 | 0.411 |
| 162 | 162 | 0.737 |
| 163 | 163 | 0.383 |
| 164 | 164 | 0.866 |
| 165 | 165 | 0.658 |
| 166 | 166 | 0.0973 |
| 167 | 167 | 0.374 |
| 168 | 168 | 0.721 |
| 169 | 169 | 0.12 |
| 17 | 17 | 0.048 |
| 18 | 18 | 0.826 |
| 19 | 19 | 0.817 |
| 2 | 2 | 0.993 |
| 20 | 20 | 0.664 |
| 21 | 21 | 0.169 |
| 22 | 22 | 0.155 |
| 23 | 23 | 0.901 |
| 24 | 24 | 0.903 |
| 25 | 25 | 0.551 |
| 26 | 26 | 0.519 |
| 27 | 27 | 0.651 |
| 28 | 28 | 0.0131 |
| 29 | 29 | 0.797 |
| 3 | 3 | 0.933 |
| 30 | 30 | 0.859 |
| 31 | 31 | 0.933 |
| 32 | 32 | 0.211 |
| 33 | 33 | 0.242 |
| 34 | 34 | 0.032 |
| 35 | 35 | 0.936 |
| 36 | 36 | 0.048 |
| 37 | 37 | 0.456 |
| 38 | 38 | 0.208 |
| 39 | 39 | 0.879 |
| 4 | 4 | 0.214 |
| 40 | 40 | 0.00905 |
| 41 | 41 | 0.0696 |
| 42 | 42 | 0.537 |
| 43 | 43 | 0.846 |
| 44 | 44 | 0.0639 |
| 45 | 45 | 0.313 |
| 46 | 46 | 0.432 |
| 47 | 47 | 0.511 |
| 48 | 48 | 0.0702 |
| 49 | 49 | 0.965 |
| 5 | 5 | 0.753 |
| 50 | 50 | 0.971 |
| 51 | 51 | 0.752 |
| 52 | 52 | 0.661 |
| 53 | 53 | 0.218 |
| 54 | 54 | 0.788 |
| 55 | 55 | 0.237 |
| 56 | 56 | 0.914 |
| 57 | 57 | 0.205 |
| 58 | 58 | 0.0651 |
| 59 | 59 | 0.207 |
| 6 | 6 | 0.52 |
| 60 | 60 | 0.963 |
| 61 | 61 | 0.901 |
| 62 | 62 | 0.284 |
| 63 | 63 | 0.823 |
| 64 | 64 | 0.726 |
| 65 | 65 | 0.61 |
| 66 | 66 | 0.0229 |
| 67 | 67 | 0.948 |
| 68 | 68 | 0.507 |
| 69 | 69 | 0.748 |
| 7 | 7 | 0.336 |
| 70 | 70 | 0.655 |
| 71 | 71 | 0.925 |
| 72 | 72 | 0.294 |
| 73 | 73 | 0.00195 |
| 74 | 74 | 0.617 |
| 75 | 75 | 0.491 |
| 76 | 76 | 0.453 |
| 77 | 77 | 0.524 |
| 78 | 78 | 0.901 |
| 79 | 79 | 0.595 |
| 8 | 8 | 0.0298 |
| 80 | 80 | 0.485 |
| 81 | 81 | 0.405 |
| 82 | 82 | 0.108 |
| 83 | 83 | 0.601 |
| 84 | 84 | 0.43 |
| 85 | 85 | 0.227 |
| 86 | 86 | 0.598 |
| 87 | 87 | 0.0417 |
| 88 | 88 | 0.942 |
| 89 | 89 | 0.965 |
| 9 | 9 | 0.146 |
| 90 | 90 | 0.195 |
| 91 | 91 | 0.193 |
| 92 | 92 | 0.676 |
| 93 | 93 | 0.672 |
| 94 | 94 | 0.627 |
| 95 | 95 | 0.0233 |
| 96 | 96 | 0.235 |
| 97 | 97 | 0.604 |
| 98 | 98 | 0.106 |
| 99 | 99 | 0.133 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12497
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000052 human endothelial cell of the vein sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
