FF:11321-117D7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005751 | ||
|accession_numbers=CAGE;DRX008459;DRR009331;DRZ000756;DRZ002141 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005751 | ||
|accession_numbers=CAGE;DRX008459;DRR009331;DRZ000756;DRZ002141;DRZ012106;DRZ013491 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037068;DRR041434;DRZ007076 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr8:25902876..25902936,-!p1@EBF2!1.70!49.31!EBF2;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.60!HIF3A;;chr7:19157248..19157268,-!p1@TWIST1!1.61!106.59!TWIST1;;chr7:15726296..15726315,-!p1@MEOX2!1.56!35.53!MEOX2;;chr1:203055129..203055147,-!p1@MYOG!1.53!32.92!MYOG;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.43!25.81!HOXC5;;chr14:61116183..61116208,-!p1@SIX1!1.34!76.86!SIX1;;chr12:54378923..54378966,+!p1@HOXC10!1.34!20.88!HOXC10;;chr6:85474299..85474324,-!p1@TBX18!1.33!35.82!TBX18;;chr7:15726243..15726293,-!p2@MEOX2!1.32!19.72!MEOX2;;chr1:170633348..170633399,+!p2@PRRX1!1.24!22.19!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.23!42.49!HMGA2;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.62!ZBTB16;;chr1:170632285..170632309,+!p1@PRRX1!1.20!16.97!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!1.17!34.51!EBF1;;chr12:54379029..54379057,+!p2@HOXC10!1.16!13.34!HOXC10;;chr21:47063625..47063658,+!p1@PCBP3!1.15!56.99!PCBP3;;chr7:27192185..27192209,-!p1@HOXA3!1.15!13.05!HOXA3;;chr8:49833948..49833973,-!p2@SNAI2!1.11!75.41!SNAI2;;chr4:174451370..174451387,-!p1@HAND2!1.11!11.89!HAND2;;chr12:66218598..66218645,+!p2@HMGA2!1.09!52.79!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.09!19.00!TCF12;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.55!PITX1;;chr19:13134772..13134822,+!p2@NFIX!1.08!16.39!NFIX;;chr11:46299199..46299233,+!p1@CREB3L1!1.07!55.54!CREB3L1;;chr3:25470156..25470227,+!p2@RARB!1.07!10.88!RARB;;chr15:42749722..42749739,-!p2@ZFP106!1.06!18.71!ZFP106;;chr12:54393880..54393962,+!p1@HOXC9!1.06!10.44!HOXC9;;chr2:239756671..239756732,+!p1@TWIST2!1.05!33.21!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!1.05!15.08!HMGA2;;chr7:19157043..19157088,-!p2@TWIST1!1.01!23.64!TWIST1;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.59!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.69!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.08!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.99!8.85!EBF3;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.85!HOXA9;;chr8:49833978..49833996,-!p1@SNAI2!0.98!179.24!SNAI2;;chr9:16870659..16870675,-!p2@BNC2!0.95!9.72!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.95!8.99!RORB;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.95!8.41!GLIS1;;chr17:61919985..61920012,-!p3@SMARCD2!0.91!18.13!SMARCD2;;chr17:1959369..1959388,+!p2@HIC1!0.89!18.71!HIC1;;chr19:45260775..45260838,+!p5@BCL3!0.89!8.85!BCL3;;chr11:113930291..113930339,+!p2@ZBTB16!0.87!10.88!ZBTB16;;chr19:46800289..46800327,+!p2@HIF3A!0.87!6.38!HIF3A;;chr20:30193083..30193098,+!p1@ID1!0.86!541.35!ID1;;chr7:15725757..15725828,-!p5@MEOX2!0.85!6.09!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.84!5.95!HOXD8;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.80!SOX11;;chr18:22932080..22932170,-!p1@ZNF521!0.82!25.23!ZNF521;;chr3:12330560..12330579,+!p1@PPARG!0.81!6.38!PPARG;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.81!5.51!HOXC5;;chr3:12329358..12329393,+!p3@PPARG!0.79!13.49!PPARG;;chr6:45296048..45296082,+!p1@RUNX2!0.79!5.95!RUNX2;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.51!SHOX2;;chr9:4300050..4300118,-!p1@GLIS3!0.78!35.53!GLIS3;;chr9:73029219..73029289,-!p2@KLF9!0.78!16.39!KLF9;;chr5:158527104..158527135,-!p4@EBF1!0.78!5.08!EBF1;;chr1:170632250..170632277,+!p7@PRRX1!0.78!5.08!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.77!4.93!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!0.77!4.93!HOXC8;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.79!HOXC10;;chr4:174450089..174450153,-!p2@HAND2!0.76!4.79!HAND2;;chr7:15726220..15726236,-!p4@MEOX2!0.76!4.79!MEOX2;;chr8:48650715..48650735,-!p1@CEBPD!0.75!651.85!CEBPD;;chr9:16870710..16870763,-!p1@BNC2!0.74!8.27!BNC2;;chr12:54694758..54694805,-!p1@NFE2!0.74!5.51!NFE2;;chr14:61116168..61116180,-!p2@SIX1!0.74!5.22!SIX1;;chr7:15726176..15726191,-!p3@MEOX2!0.74!4.50!MEOX2;;chr2:239756739..239756755,+!p2@TWIST2!0.73!7.98!TWIST2;;chr11:113930401..113930422,+!p3@ZBTB16!0.73!4.35!ZBTB16;;chr8:77593474..77593612,+!p1@ZFHX4!0.72!20.01!ZFHX4;;chr14:24837368..24837401,+!p1@NFATC4!0.72!10.88!NFATC4;;chr3:12329397..12329433,+!p2@PPARG!0.72!10.44!PPARG;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.21!HOXA10;;chr6:34204921..34204939,+!p3@HMGA1!0.71!139.65!HMGA1;;chrX:106960285..106960299,-!p1@TSC22D3!0.71!124.57!TSC22D3;;chr11:47279504..47279563,+!p1@NR1H3!0.71!10.15!NR1H3;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.18!OSR1;;chr19:13134457..13134462,+!p5@NFIX!0.70!7.69!NFIX;;chr9:16705069..16705086,-!p3@BNC2!0.70!4.06!BNC2;;chr12:54410948..54410992,+!p3@HOXC5!0.70!4.06!HOXC5;;chr1:119530493..119530572,-!p1@TBX15!0.70!4.06!TBX15;;chr1:61547894..61547968,+!p2@NFIA!0.69!12.62!NFIA;;chr6:34204672..34204692,+!p1@HMGA1!0.68!488.85!HMGA1;;chr2:45236540..45236577,-!p1@SIX2!0.68!3.77!SIX2;;chr12:115121962..115121987,-!p1@TBX3!0.67!35.67!TBX3;;chr10:63809013..63809041,+!p3@ARID5B!0.67!23.35!ARID5B;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.62!TBX2;;chr1:170632959..170632987,+!p4@PRRX1!0.67!4.06!PRRX1;;chr2:208030647..208030689,-!p1@KLF7!0.66!34.22!KLF7;;chr1:23696308..23696339,-!p2@ZNF436!0.66!8.27!ZNF436;;chr3:24536253..24536328,-!p1@THRB!0.66!7.25!THRB;;chr5:158526459..158526481,-!p2@EBF1!0.66!4.93!EBF1;;chr20:51588873..51588953,+!p1@TSHZ2!0.65!4.79!TSHZ2;;chr11:17741111..17741124,+!p1@MYOD1!0.65!3.48!MYOD1;;chr17:17726907..17726958,-!p2@SREBF1!0.64!24.22!SREBF1;;chr2:102091566..102091581,-!p1@RFX8!0.64!3.34!RFX8;;chr5:134369879..134369898,-!p2@PITX1!0.64!3.34!PITX1;;chr9:16728327..16728338,-!p5@BNC2!0.64!3.34!BNC2;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.87!HIF1A;;chr11:63684602..63684664,-!p1@RCOR2!0.63!7.11!RCOR2;;chr17:61920023..61920110,-!p1@SMARCD2!0.62!53.80!SMARCD2;;chr9:73028814..73028895,-!p1@KLF9!0.62!37.41!KLF9;;chr14:62162258..62162269,+!p2@HIF1A!0.62!36.11!HIF1A;;chr6:45390077..45390105,+!p9@RUNX2!0.62!4.21!RUNX2;;chr7:27224842..27224872,-!p1@HOXA11!0.62!3.19!HOXA11;;chr1:158969752..158969780,+!p6@IFI16!0.61!5.95!IFI16;;chr6:45390002..45390023,+!p6@RUNX2!0.61!5.80!RUNX2;;chr6:85474198..85474212,-!p3@TBX18!0.61!3.05!TBX18;;chr1:170632477..170632506,+!p6@PRRX1!0.61!3.05!PRRX1;;chr4:299227..299272,-!p1@ZNF732!0.61!3.05!ZNF732;;chr11:65687362..65687436,+!p3@DRAP1!0.60!16.10!DRAP1;;chr8:116681409..116681431,-!p2@TRPS1!0.60!9.43!TRPS1;;chr6:45390025..45390076,+!p2@RUNX2!0.60!8.12!RUNX2;;chr7:15726206..15726217,-!p6@MEOX2!0.59!2.90!MEOX2;;chr12:54394309..54394336,+!p2@HOXC9!0.59!2.90!HOXC9;;chr3:25470062..25470084,+!p4@RARB!0.59!2.90!RARB;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.76!HMGA2;;chr13:74708029..74708077,-!p2@KLF12!0.58!9.43!KLF12;;chr7:42276787..42276815,-!p1@GLI3!0.57!8.56!GLI3;;chr1:23696448..23696453,-!p5@ZNF436!0.57!3.48!ZNF436;;chr19:47523058..47523114,+!p1@NPAS1!0.57!2.76!NPAS1;;chr18:22932004..22932021,-!p2@ZNF521!0.57!2.76!ZNF521;;chr8:93115584..93115642,-!p5@RUNX1T1!0.57!2.76!RUNX1T1;;chr21:47063590..47063597,+!p2@PCBP3!0.57!2.76!PCBP3;;chr3:24536332..24536358,-!p2@THRB!0.57!2.76!THRB;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.28!GLI3;;chr1:221052776..221052799,+!p1@HLX!0.56!5.37!HLX;;chr2:166326200..166326216,+!p1@CSRNP3!0.56!4.21!CSRNP3;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.34!TBX18;;chr8:30890810..30890880,-!p1@PURG!0.56!2.61!PURG;;chr9:16728161..16728185,-!p4@BNC2!0.56!2.61!BNC2;;chr11:46299443..46299459,+!p4@CREB3L1!0.56!2.61!CREB3L1;;chr1:119530706..119530736,-!p3@TBX15!0.56!2.61!TBX15;;chr5:176738887..176738934,-!p1@MXD3!0.55!21.32!MXD3;;chr5:124082322..124082364,-!p1@ZNF608!0.55!7.69!ZNF608;;chr5:178368186..178368238,+!p1@ZNF454!0.55!5.22!ZNF454;;chr20:50721803..50721857,-!p2@ZFP64!0.55!4.50!ZFP64;;chr15:83953397..83953425,-!p1@BNC1!0.55!3.05!BNC1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.54!35.24!TAX1BP3;;chr10:63853436..63853442,+!p4@ARID5B!0.54!16.24!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.54!13.34!ZBTB20;;chr1:158979872..158979898,+!p3@IFI16!0.54!9.14!IFI16;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.24!SMARCD3;;chr11:65686802..65686818,+!p6@DRAP1!0.54!4.79!DRAP1;;chr11:125034605..125034636,+!p2@PKNOX2!0.54!2.47!PKNOX2;;chr7:27196267..27196311,-!p1@HOXA7!0.54!2.47!HOXA7;;chr8:77593750..77593757,+!p3@ZFHX4!0.54!2.47!ZFHX4;;chr1:170632762..170632786,+!p13@PRRX1!0.54!2.47!PRRX1;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.25!NFIB;;chr6:28411241..28411284,-!p1@ZSCAN23!0.53!9.14!ZSCAN23;;chr12:66218573..66218596,+!p7@HMGA2!0.53!3.92!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!0.52!21.90!NR2F2;;chr8:116680215..116680245,-!p6@TRPS1!0.52!4.06!TRPS1;;chr3:42947600..42947680,+!p1@ZNF662!0.52!3.63!ZNF662;;chr2:119604456..119604501,-!p2@EN1!0.52!2.32!EN1;;chr1:170632723..170632739,+!p8@PRRX1!0.52!2.32!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.52!2.32!KLF17;;chr5:158526756..158526797,-!p3@EBF1!0.52!2.32!EBF1;;chr11:125034640..125034655,+!p1@PKNOX2!0.52!2.32!PKNOX2;;chr12:115122318..115122331,-!p2@TBX3!0.52!2.32!TBX3;;chr12:54378984..54378996,+!p7@HOXC10!0.52!2.32!HOXC10;;chr5:321810..321877,+!p1@AHRR!0.51!8.85!AHRR;;chr9:14082760..14082775,-!p6@NFIB!0.51!4.21!NFIB;;chr22:42269885..42269899,+!p4@SREBF2!0.51!3.77!SREBF2;;chr8:128748308..128748324,+!p2@MYC!0.50!79.47!MYC;;chr15:67357924..67357952,+!p2@SMAD3!0.50!18.56!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.50!2.18!FOXL1;;chr2:214014959..214015006,-!p4@IKZF2!0.50!2.18!IKZF2;;chr11:113930477..113930488,+!p4@ZBTB16!0.50!2.18!ZBTB16;;chr12:54366975..54367001,+!p1@HOXC11!0.50!2.18!HOXC11;;chr12:54380036..54380091,+!p4@HOXC10!0.50!2.18!HOXC10;;chr1:170633245..170633256,+!p14@PRRX1!0.50!2.18!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!0.50!2.18!HEYL;;chr14:62162224..62162254,+!p1@HIF1A!0.49!409.09!HIF1A;;chr12:53614115..53614154,-!p1@RARG!0.49!14.50!RARG;;chr15:37392724..37392757,-!p1@MEIS2!0.49!12.47!MEIS2;;chr8:57123815..57123867,-!p1@PLAG1!0.49!11.02!PLAG1;;chr1:61547781..61547809,+!p5@NFIA!0.49!5.08!NFIA;;chr7:86782094..86782108,+!p5@DMTF1!0.49!3.92!DMTF1;;chr12:66218378..66218401,+!p6@HMGA2!0.49!3.63!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.49!2.47!NR1H3;;chr1:23696348..23696363,-!p4@ZNF436!0.49!2.47!ZNF436;;chr17:1958388..1958404,+!p1@HIC1!0.48!16.82!HIC1;;chr20:45142154..45142227,-!p1@ZNF334!0.48!4.79!ZN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| |expression_enrichment_score=chr8:25902876..25902936,-!p1@EBF2!1.70!49.31!EBF2;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.60!HIF3A;;chr7:19157248..19157268,-!p1@TWIST1!1.61!106.59!TWIST1;;chr7:15726296..15726315,-!p1@MEOX2!1.56!35.53!MEOX2;;chr1:203055129..203055147,-!p1@MYOG!1.53!32.92!MYOG;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.43!25.81!HOXC5;;chr14:61116183..61116208,-!p1@SIX1!1.34!76.86!SIX1;;chr12:54378923..54378966,+!p1@HOXC10!1.34!20.88!HOXC10;;chr6:85474299..85474324,-!p1@TBX18!1.33!35.82!TBX18;;chr7:15726243..15726293,-!p2@MEOX2!1.32!19.72!MEOX2;;chr1:170633348..170633399,+!p2@PRRX1!1.24!22.19!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.23!42.49!HMGA2;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.62!ZBTB16;;chr1:170632285..170632309,+!p1@PRRX1!1.20!16.97!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!1.17!34.51!EBF1;;chr12:54379029..54379057,+!p2@HOXC10!1.16!13.34!HOXC10;;chr21:47063625..47063658,+!p1@PCBP3!1.15!56.99!PCBP3;;chr7:27192185..27192209,-!p1@HOXA3!1.15!13.05!HOXA3;;chr8:49833948..49833973,-!p2@SNAI2!1.11!75.41!SNAI2;;chr4:174451370..174451387,-!p1@HAND2!1.11!11.89!HAND2;;chr12:66218598..66218645,+!p2@HMGA2!1.09!52.79!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.09!19.00!TCF12;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.55!PITX1;;chr19:13134772..13134822,+!p2@NFIX!1.08!16.39!NFIX;;chr11:46299199..46299233,+!p1@CREB3L1!1.07!55.54!CREB3L1;;chr3:25470156..25470227,+!p2@RARB!1.07!10.88!RARB;;chr15:42749722..42749739,-!p2@ZFP106!1.06!18.71!ZFP106;;chr12:54393880..54393962,+!p1@HOXC9!1.06!10.44!HOXC9;;chr2:239756671..239756732,+!p1@TWIST2!1.05!33.21!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!1.05!15.08!HMGA2;;chr7:19157043..19157088,-!p2@TWIST1!1.01!23.64!TWIST1;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.59!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.69!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.08!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.99!8.85!EBF3;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.85!HOXA9;;chr8:49833978..49833996,-!p1@SNAI2!0.98!179.24!SNAI2;;chr9:16870659..16870675,-!p2@BNC2!0.95!9.72!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.95!8.99!RORB;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.95!8.41!GLIS1;;chr17:61919985..61920012,-!p3@SMARCD2!0.91!18.13!SMARCD2;;chr17:1959369..1959388,+!p2@HIC1!0.89!18.71!HIC1;;chr19:45260775..45260838,+!p5@BCL3!0.89!8.85!BCL3;;chr11:113930291..113930339,+!p2@ZBTB16!0.87!10.88!ZBTB16;;chr19:46800289..46800327,+!p2@HIF3A!0.87!6.38!HIF3A;;chr20:30193083..30193098,+!p1@ID1!0.86!541.35!ID1;;chr7:15725757..15725828,-!p5@MEOX2!0.85!6.09!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.84!5.95!HOXD8;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.80!SOX11;;chr18:22932080..22932170,-!p1@ZNF521!0.82!25.23!ZNF521;;chr3:12330560..12330579,+!p1@PPARG!0.81!6.38!PPARG;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.81!5.51!HOXC5;;chr3:12329358..12329393,+!p3@PPARG!0.79!13.49!PPARG;;chr6:45296048..45296082,+!p1@RUNX2!0.79!5.95!RUNX2;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.51!SHOX2;;chr9:4300050..4300118,-!p1@GLIS3!0.78!35.53!GLIS3;;chr9:73029219..73029289,-!p2@KLF9!0.78!16.39!KLF9;;chr5:158527104..158527135,-!p4@EBF1!0.78!5.08!EBF1;;chr1:170632250..170632277,+!p7@PRRX1!0.78!5.08!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.77!4.93!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!0.77!4.93!HOXC8;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.79!HOXC10;;chr4:174450089..174450153,-!p2@HAND2!0.76!4.79!HAND2;;chr7:15726220..15726236,-!p4@MEOX2!0.76!4.79!MEOX2;;chr8:48650715..48650735,-!p1@CEBPD!0.75!651.85!CEBPD;;chr9:16870710..16870763,-!p1@BNC2!0.74!8.27!BNC2;;chr12:54694758..54694805,-!p1@NFE2!0.74!5.51!NFE2;;chr14:61116168..61116180,-!p2@SIX1!0.74!5.22!SIX1;;chr7:15726176..15726191,-!p3@MEOX2!0.74!4.50!MEOX2;;chr2:239756739..239756755,+!p2@TWIST2!0.73!7.98!TWIST2;;chr11:113930401..113930422,+!p3@ZBTB16!0.73!4.35!ZBTB16;;chr8:77593474..77593612,+!p1@ZFHX4!0.72!20.01!ZFHX4;;chr14:24837368..24837401,+!p1@NFATC4!0.72!10.88!NFATC4;;chr3:12329397..12329433,+!p2@PPARG!0.72!10.44!PPARG;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.21!HOXA10;;chr6:34204921..34204939,+!p3@HMGA1!0.71!139.65!HMGA1;;chrX:106960285..106960299,-!p1@TSC22D3!0.71!124.57!TSC22D3;;chr11:47279504..47279563,+!p1@NR1H3!0.71!10.15!NR1H3;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.18!OSR1;;chr19:13134457..13134462,+!p5@NFIX!0.70!7.69!NFIX;;chr9:16705069..16705086,-!p3@BNC2!0.70!4.06!BNC2;;chr12:54410948..54410992,+!p3@HOXC5!0.70!4.06!HOXC5;;chr1:119530493..119530572,-!p1@TBX15!0.70!4.06!TBX15;;chr1:61547894..61547968,+!p2@NFIA!0.69!12.62!NFIA;;chr6:34204672..34204692,+!p1@HMGA1!0.68!488.85!HMGA1;;chr2:45236540..45236577,-!p1@SIX2!0.68!3.77!SIX2;;chr12:115121962..115121987,-!p1@TBX3!0.67!35.67!TBX3;;chr10:63809013..63809041,+!p3@ARID5B!0.67!23.35!ARID5B;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.62!TBX2;;chr1:170632959..170632987,+!p4@PRRX1!0.67!4.06!PRRX1;;chr2:208030647..208030689,-!p1@KLF7!0.66!34.22!KLF7;;chr1:23696308..23696339,-!p2@ZNF436!0.66!8.27!ZNF436;;chr3:24536253..24536328,-!p1@THRB!0.66!7.25!THRB;;chr5:158526459..158526481,-!p2@EBF1!0.66!4.93!EBF1;;chr20:51588873..51588953,+!p1@TSHZ2!0.65!4.79!TSHZ2;;chr11:17741111..17741124,+!p1@MYOD1!0.65!3.48!MYOD1;;chr17:17726907..17726958,-!p2@SREBF1!0.64!24.22!SREBF1;;chr2:102091566..102091581,-!p1@RFX8!0.64!3.34!RFX8;;chr5:134369879..134369898,-!p2@PITX1!0.64!3.34!PITX1;;chr9:16728327..16728338,-!p5@BNC2!0.64!3.34!BNC2;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.87!HIF1A;;chr11:63684602..63684664,-!p1@RCOR2!0.63!7.11!RCOR2;;chr17:61920023..61920110,-!p1@SMARCD2!0.62!53.80!SMARCD2;;chr9:73028814..73028895,-!p1@KLF9!0.62!37.41!KLF9;;chr14:62162258..62162269,+!p2@HIF1A!0.62!36.11!HIF1A;;chr6:45390077..45390105,+!p9@RUNX2!0.62!4.21!RUNX2;;chr7:27224842..27224872,-!p1@HOXA11!0.62!3.19!HOXA11;;chr1:158969752..158969780,+!p6@IFI16!0.61!5.95!IFI16;;chr6:45390002..45390023,+!p6@RUNX2!0.61!5.80!RUNX2;;chr6:85474198..85474212,-!p3@TBX18!0.61!3.05!TBX18;;chr1:170632477..170632506,+!p6@PRRX1!0.61!3.05!PRRX1;;chr4:299227..299272,-!p1@ZNF732!0.61!3.05!ZNF732;;chr11:65687362..65687436,+!p3@DRAP1!0.60!16.10!DRAP1;;chr8:116681409..116681431,-!p2@TRPS1!0.60!9.43!TRPS1;;chr6:45390025..45390076,+!p2@RUNX2!0.60!8.12!RUNX2;;chr7:15726206..15726217,-!p6@MEOX2!0.59!2.90!MEOX2;;chr12:54394309..54394336,+!p2@HOXC9!0.59!2.90!HOXC9;;chr3:25470062..25470084,+!p4@RARB!0.59!2.90!RARB;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.76!HMGA2;;chr13:74708029..74708077,-!p2@KLF12!0.58!9.43!KLF12;;chr7:42276787..42276815,-!p1@GLI3!0.57!8.56!GLI3;;chr1:23696448..23696453,-!p5@ZNF436!0.57!3.48!ZNF436;;chr19:47523058..47523114,+!p1@NPAS1!0.57!2.76!NPAS1;;chr18:22932004..22932021,-!p2@ZNF521!0.57!2.76!ZNF521;;chr8:93115584..93115642,-!p5@RUNX1T1!0.57!2.76!RUNX1T1;;chr21:47063590..47063597,+!p2@PCBP3!0.57!2.76!PCBP3;;chr3:24536332..24536358,-!p2@THRB!0.57!2.76!THRB;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.28!GLI3;;chr1:221052776..221052799,+!p1@HLX!0.56!5.37!HLX;;chr2:166326200..166326216,+!p1@CSRNP3!0.56!4.21!CSRNP3;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.34!TBX18;;chr8:30890810..30890880,-!p1@PURG!0.56!2.61!PURG;;chr9:16728161..16728185,-!p4@BNC2!0.56!2.61!BNC2;;chr11:46299443..46299459,+!p4@CREB3L1!0.56!2.61!CREB3L1;;chr1:119530706..119530736,-!p3@TBX15!0.56!2.61!TBX15;;chr5:176738887..176738934,-!p1@MXD3!0.55!21.32!MXD3;;chr5:124082322..124082364,-!p1@ZNF608!0.55!7.69!ZNF608;;chr5:178368186..178368238,+!p1@ZNF454!0.55!5.22!ZNF454;;chr20:50721803..50721857,-!p2@ZFP64!0.55!4.50!ZFP64;;chr15:83953397..83953425,-!p1@BNC1!0.55!3.05!BNC1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.54!35.24!TAX1BP3;;chr10:63853436..63853442,+!p4@ARID5B!0.54!16.24!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.54!13.34!ZBTB20;;chr1:158979872..158979898,+!p3@IFI16!0.54!9.14!IFI16;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.24!SMARCD3;;chr11:65686802..65686818,+!p6@DRAP1!0.54!4.79!DRAP1;;chr11:125034605..125034636,+!p2@PKNOX2!0.54!2.47!PKNOX2;;chr7:27196267..27196311,-!p1@HOXA7!0.54!2.47!HOXA7;;chr8:77593750..77593757,+!p3@ZFHX4!0.54!2.47!ZFHX4;;chr1:170632762..170632786,+!p13@PRRX1!0.54!2.47!PRRX1;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.25!NFIB;;chr6:28411241..28411284,-!p1@ZSCAN23!0.53!9.14!ZSCAN23;;chr12:66218573..66218596,+!p7@HMGA2!0.53!3.92!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!0.52!21.90!NR2F2;;chr8:116680215..116680245,-!p6@TRPS1!0.52!4.06!TRPS1;;chr3:42947600..42947680,+!p1@ZNF662!0.52!3.63!ZNF662;;chr2:119604456..119604501,-!p2@EN1!0.52!2.32!EN1;;chr1:170632723..170632739,+!p8@PRRX1!0.52!2.32!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.52!2.32!KLF17;;chr5:158526756..158526797,-!p3@EBF1!0.52!2.32!EBF1;;chr11:125034640..125034655,+!p1@PKNOX2!0.52!2.32!PKNOX2;;chr12:115122318..115122331,-!p2@TBX3!0.52!2.32!TBX3;;chr12:54378984..54378996,+!p7@HOXC10!0.52!2.32!HOXC10;;chr5:321810..321877,+!p1@AHRR!0.51!8.85!AHRR;;chr9:14082760..14082775,-!p6@NFIB!0.51!4.21!NFIB;;chr22:42269885..42269899,+!p4@SREBF2!0.51!3.77!SREBF2;;chr8:128748308..128748324,+!p2@MYC!0.50!79.47!MYC;;chr15:67357924..67357952,+!p2@SMAD3!0.50!18.56!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.50!2.18!FOXL1;;chr2:214014959..214015006,-!p4@IKZF2!0.50!2.18!IKZF2;;chr11:113930477..113930488,+!p4@ZBTB16!0.50!2.18!ZBTB16;;chr12:54366975..54367001,+!p1@HOXC11!0.50!2.18!HOXC11;;chr12:54380036..54380091,+!p4@HOXC10!0.50!2.18!HOXC10;;chr1:170633245..170633256,+!p14@PRRX1!0.50!2.18!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!0.50!2.18!HEYL;;chr14:62162224..62162254,+!p1@HIF1A!0.49!409.09!HIF1A;;chr12:53614115..53614154,-!p1@RARG!0.49!14.50!RARG;;chr15:37392724..37392757,-!p1@MEIS2!0.49!12.47!MEIS2;;chr8:57123815..57123867,-!p1@PLAG1!0.49!11.02!PLAG1;;chr1:61547781..61547809,+!p5@NFIA!0.49!5.08!NFIA;;chr7:86782094..86782108,+!p5@DMTF1!0.49!3.92!DMTF1;;chr12:66218378..66218401,+!p6@HMGA2!0.49!3.63!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.49!2.47!NR1H3;;chr1:23696348..23696363,-!p4@ZNF436!0.49!2.47!ZNF436;;chr17:1958388..1958404,+!p1@HIC1!0.48!16.82!HIC1;;chr20:45142154..45142227,-!p1@ZNF334!0.48!4.79!ZN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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222 | |ffid_belonging_in_development=CL:0000355,CL:0000222 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor2.CNhs11964.11321-117D7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11321-117D7 | |id=FF:11321-117D7 | ||
|is_a=EFO:0002091;;FF:0000165 | |is_a=EFO:0002091;;FF:0000165 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11964 | |library_id=CNhs11964 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs11964 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11321 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GAGTGG.11321 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11321 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GAGTGG.11321 | |||
|name=Skeletal Muscle Satellite Cells, donor2 | |name=Skeletal Muscle Satellite Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11964,LSID836,release011,COMPLETED | |profile_hcage=CNhs11964,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 67: | Line 82: | ||
|rna_tube_id=117D7 | |rna_tube_id=117D7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.GAGTGG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 90: | Line 106: | ||
|top_motifs=RXR{A,B,G}:1.63567627522;TFAP4:1.32251410043;ALX4:1.30106497604;UFEwm:1.24276312641;EVI1:1.22051599898;AIRE:1.2024119148;EN1,2:1.19080668748;ZNF238:1.15004538857;GFI1B:1.12237308607;NR3C1:1.1060293912;YY1:1.0501883064;TAL1_TCF{3,4,12}:1.04194643477;RXRA_VDR{dimer}:1.00678822216;NKX2-2,8:1.00419766616;NKX3-1:0.996300826384;GLI1..3:0.970496492428;POU3F1..4:0.960441738304;PAX4:0.960160397558;GZF1:0.953757544101;NANOG{mouse}:0.94574067209;KLF4:0.942612180793;GFI1:0.874640480147;ATF6:0.832890615544;IKZF1:0.826935653829;NKX2-1,4:0.795772538432;MZF1:0.769554960359;MYBL2:0.767640392342;TOPORS:0.764546531333;EBF1:0.764427917039;ESR1:0.739070218969;CDX1,2,4:0.738435327713;TEAD1:0.737961537358;HOX{A5,B5}:0.735258965889;SRF:0.687132019173;SOX17:0.661963835878;CDC5L:0.658030066516;TFAP2{A,C}:0.629722799251;STAT5{A,B}:0.612027885907;FOXD3:0.594127970115;GTF2A1,2:0.589313567815;PATZ1:0.571868022923;ZIC1..3:0.564686889211;SPZ1:0.556573146745;PAX5:0.54638118889;FOXP1:0.54584361402;TFCP2:0.535618475023;GTF2I:0.525448396878;TLX1..3_NFIC{dimer}:0.506435608203;AR:0.485767095954;XBP1:0.461521736338;ZNF143:0.39869475346;ZBTB16:0.398109402896;PAX1,9:0.386409553511;STAT1,3:0.379637305531;GCM1,2:0.344835912389;HES1:0.34425108929;EGR1..3:0.337214391421;NFY{A,B,C}:0.319811370586;ZNF423:0.319149572571;POU1F1:0.314622076626;E2F1..5:0.287360621102;ZBTB6:0.274831222238;HIC1:0.271930690896;PITX1..3:0.2665624698;NKX2-3_NKX2-5:0.25940235934;NRF1:0.259140783027;SP1:0.256831557407;NKX6-1,2:0.252948372718;NFIX:0.252829709043;TBX4,5:0.248903166245;MYFfamily:0.219632609483;PDX1:0.218892385363;NR6A1:0.212574964413;HOX{A4,D4}:0.211724718601;NHLH1,2:0.210836742594;MEF2{A,B,C,D}:0.206148424139;T:0.200023880795;ONECUT1,2:0.18533057798;MAZ:0.18265275491;LHX3,4:0.176782299548;NFATC1..3:0.172985518054;FOXP3:0.169845494937;SOX5:0.156676334363;PRDM1:0.150563596762;XCPE1{core}:0.150556140811;ZNF148:0.138977412672;TEF:0.127644859589;ELK1,4_GABP{A,B1}:0.125584450946;NR1H4:0.108345050407;TP53:0.104663050694;STAT2,4,6:0.102553123686;HNF4A_NR2F1,2:0.0929389744543;TBP:0.0926999834787;GATA4:0.0737807603549;MTF1:0.057769034821;RREB1:0.0522637640908;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0453174490581;IKZF2:0.0375972875025;DBP:0.0353931248944;NR5A1,2:0.000939311357008;TFDP1:-0.00851487291917;HIF1A:-0.0114370565882;ZNF384:-0.0269287321787;FOXM1:-0.0330222038173;MAFB:-0.0346617331443;FOXO1,3,4:-0.0489492135915;MTE{core}:-0.0563586347028;HNF1A:-0.0582803366022;MED-1{core}:-0.0749874082158;ESRRA:-0.0758498238944;ZFP161:-0.0817606401755;PAX8:-0.0828651659979;DMAP1_NCOR{1,2}_SMARC:-0.0914236895561;SMAD1..7,9:-0.0942448137022;POU6F1:-0.0943041106071;PPARG:-0.096284524379;RFX1:-0.0973426846448;BACH2:-0.0992419897409;ALX1:-0.102749731893;NKX3-2:-0.129886972975;TFAP2B:-0.136441062871;PBX1:-0.150417536263;NFE2L2:-0.161153629442;MYB:-0.177092982772;NFE2L1:-0.187579074659;HLF:-0.192251240553;AHR_ARNT_ARNT2:-0.211363149367;BPTF:-0.22301494087;HSF1,2:-0.268966837986;CREB1:-0.280112009373;FOS_FOS{B,L1}_JUN{B,D}:-0.281753041538;POU2F1..3:-0.283278314036;FOXL1:-0.309052886285;TGIF1:-0.31504104567;PRRX1,2:-0.318518698089;PAX3,7:-0.319591019403;FOSL2:-0.324808597797;HMGA1,2:-0.325973928983;RFX2..5_RFXANK_RFXAP:-0.32638720187;REST:-0.328800062437;CEBPA,B_DDIT3:-0.337420023033;TLX2:-0.354957861542;BREu{core}:-0.362238370863;LMO2:-0.369881577725;RBPJ:-0.37330317269;RUNX1..3:-0.388674306331;NFKB1_REL_RELA:-0.391707193069;IRF1,2:-0.414409899331;NFE2:-0.435757946884;ARID5B:-0.440142022408;HAND1,2:-0.443685506172;FOXA2:-0.446562225923;CUX2:-0.455595972229;HMX1:-0.46875102401;JUN:-0.485579066335;LEF1_TCF7_TCF7L1,2:-0.492532365628;IRF7:-0.527812293612;OCT4_SOX2{dimer}:-0.531024670387;ATF4:-0.548552091127;ELF1,2,4:-0.581192824316;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582314725333;SPI1:-0.591084865636;POU5F1:-0.595808562426;PAX6:-0.602360705078;FOX{D1,D2}:-0.627172569352;ETS1,2:-0.637945218387;SOX{8,9,10}:-0.63909087794;RORA:-0.653145171482;ADNP_IRX_SIX_ZHX:-0.656539654965;NANOG:-0.657903769202;SREBF1,2:-0.658801367699;EP300:-0.663569380783;bHLH_family:-0.689445384128;SPIB:-0.69958071851;NFIL3:-0.702345778868;SOX2:-0.716924753913;HBP1_HMGB_SSRP1_UBTF:-0.773248126231;ATF5_CREB3:-0.789219267725;HOX{A6,A7,B6,B7}:-0.794359363733;FOX{F1,F2,J1}:-0.81433222308;SNAI1..3:-0.8334393329;PAX2:-0.870368526875;FOXN1:-0.870606439361;GATA6:-0.910917288519;CRX:-0.934979334554;HOXA9_MEIS1:-0.938844179458;FOXQ1:-0.966645762427;VSX1,2:-0.984143731881;MYOD1:-1.02672106111;ZEB1:-1.19102817848;ATF2:-1.22987242061;FOX{I1,J2}:-1.37666305646 | |top_motifs=RXR{A,B,G}:1.63567627522;TFAP4:1.32251410043;ALX4:1.30106497604;UFEwm:1.24276312641;EVI1:1.22051599898;AIRE:1.2024119148;EN1,2:1.19080668748;ZNF238:1.15004538857;GFI1B:1.12237308607;NR3C1:1.1060293912;YY1:1.0501883064;TAL1_TCF{3,4,12}:1.04194643477;RXRA_VDR{dimer}:1.00678822216;NKX2-2,8:1.00419766616;NKX3-1:0.996300826384;GLI1..3:0.970496492428;POU3F1..4:0.960441738304;PAX4:0.960160397558;GZF1:0.953757544101;NANOG{mouse}:0.94574067209;KLF4:0.942612180793;GFI1:0.874640480147;ATF6:0.832890615544;IKZF1:0.826935653829;NKX2-1,4:0.795772538432;MZF1:0.769554960359;MYBL2:0.767640392342;TOPORS:0.764546531333;EBF1:0.764427917039;ESR1:0.739070218969;CDX1,2,4:0.738435327713;TEAD1:0.737961537358;HOX{A5,B5}:0.735258965889;SRF:0.687132019173;SOX17:0.661963835878;CDC5L:0.658030066516;TFAP2{A,C}:0.629722799251;STAT5{A,B}:0.612027885907;FOXD3:0.594127970115;GTF2A1,2:0.589313567815;PATZ1:0.571868022923;ZIC1..3:0.564686889211;SPZ1:0.556573146745;PAX5:0.54638118889;FOXP1:0.54584361402;TFCP2:0.535618475023;GTF2I:0.525448396878;TLX1..3_NFIC{dimer}:0.506435608203;AR:0.485767095954;XBP1:0.461521736338;ZNF143:0.39869475346;ZBTB16:0.398109402896;PAX1,9:0.386409553511;STAT1,3:0.379637305531;GCM1,2:0.344835912389;HES1:0.34425108929;EGR1..3:0.337214391421;NFY{A,B,C}:0.319811370586;ZNF423:0.319149572571;POU1F1:0.314622076626;E2F1..5:0.287360621102;ZBTB6:0.274831222238;HIC1:0.271930690896;PITX1..3:0.2665624698;NKX2-3_NKX2-5:0.25940235934;NRF1:0.259140783027;SP1:0.256831557407;NKX6-1,2:0.252948372718;NFIX:0.252829709043;TBX4,5:0.248903166245;MYFfamily:0.219632609483;PDX1:0.218892385363;NR6A1:0.212574964413;HOX{A4,D4}:0.211724718601;NHLH1,2:0.210836742594;MEF2{A,B,C,D}:0.206148424139;T:0.200023880795;ONECUT1,2:0.18533057798;MAZ:0.18265275491;LHX3,4:0.176782299548;NFATC1..3:0.172985518054;FOXP3:0.169845494937;SOX5:0.156676334363;PRDM1:0.150563596762;XCPE1{core}:0.150556140811;ZNF148:0.138977412672;TEF:0.127644859589;ELK1,4_GABP{A,B1}:0.125584450946;NR1H4:0.108345050407;TP53:0.104663050694;STAT2,4,6:0.102553123686;HNF4A_NR2F1,2:0.0929389744543;TBP:0.0926999834787;GATA4:0.0737807603549;MTF1:0.057769034821;RREB1:0.0522637640908;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0453174490581;IKZF2:0.0375972875025;DBP:0.0353931248944;NR5A1,2:0.000939311357008;TFDP1:-0.00851487291917;HIF1A:-0.0114370565882;ZNF384:-0.0269287321787;FOXM1:-0.0330222038173;MAFB:-0.0346617331443;FOXO1,3,4:-0.0489492135915;MTE{core}:-0.0563586347028;HNF1A:-0.0582803366022;MED-1{core}:-0.0749874082158;ESRRA:-0.0758498238944;ZFP161:-0.0817606401755;PAX8:-0.0828651659979;DMAP1_NCOR{1,2}_SMARC:-0.0914236895561;SMAD1..7,9:-0.0942448137022;POU6F1:-0.0943041106071;PPARG:-0.096284524379;RFX1:-0.0973426846448;BACH2:-0.0992419897409;ALX1:-0.102749731893;NKX3-2:-0.129886972975;TFAP2B:-0.136441062871;PBX1:-0.150417536263;NFE2L2:-0.161153629442;MYB:-0.177092982772;NFE2L1:-0.187579074659;HLF:-0.192251240553;AHR_ARNT_ARNT2:-0.211363149367;BPTF:-0.22301494087;HSF1,2:-0.268966837986;CREB1:-0.280112009373;FOS_FOS{B,L1}_JUN{B,D}:-0.281753041538;POU2F1..3:-0.283278314036;FOXL1:-0.309052886285;TGIF1:-0.31504104567;PRRX1,2:-0.318518698089;PAX3,7:-0.319591019403;FOSL2:-0.324808597797;HMGA1,2:-0.325973928983;RFX2..5_RFXANK_RFXAP:-0.32638720187;REST:-0.328800062437;CEBPA,B_DDIT3:-0.337420023033;TLX2:-0.354957861542;BREu{core}:-0.362238370863;LMO2:-0.369881577725;RBPJ:-0.37330317269;RUNX1..3:-0.388674306331;NFKB1_REL_RELA:-0.391707193069;IRF1,2:-0.414409899331;NFE2:-0.435757946884;ARID5B:-0.440142022408;HAND1,2:-0.443685506172;FOXA2:-0.446562225923;CUX2:-0.455595972229;HMX1:-0.46875102401;JUN:-0.485579066335;LEF1_TCF7_TCF7L1,2:-0.492532365628;IRF7:-0.527812293612;OCT4_SOX2{dimer}:-0.531024670387;ATF4:-0.548552091127;ELF1,2,4:-0.581192824316;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582314725333;SPI1:-0.591084865636;POU5F1:-0.595808562426;PAX6:-0.602360705078;FOX{D1,D2}:-0.627172569352;ETS1,2:-0.637945218387;SOX{8,9,10}:-0.63909087794;RORA:-0.653145171482;ADNP_IRX_SIX_ZHX:-0.656539654965;NANOG:-0.657903769202;SREBF1,2:-0.658801367699;EP300:-0.663569380783;bHLH_family:-0.689445384128;SPIB:-0.69958071851;NFIL3:-0.702345778868;SOX2:-0.716924753913;HBP1_HMGB_SSRP1_UBTF:-0.773248126231;ATF5_CREB3:-0.789219267725;HOX{A6,A7,B6,B7}:-0.794359363733;FOX{F1,F2,J1}:-0.81433222308;SNAI1..3:-0.8334393329;PAX2:-0.870368526875;FOXN1:-0.870606439361;GATA6:-0.910917288519;CRX:-0.934979334554;HOXA9_MEIS1:-0.938844179458;FOXQ1:-0.966645762427;VSX1,2:-0.984143731881;MYOD1:-1.02672106111;ZEB1:-1.19102817848;ATF2:-1.22987242061;FOX{I1,J2}:-1.37666305646 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11321-117D7;search_select_hide=table117:FF:11321-117D7 | |||
}} | }} |
Latest revision as of 17:52, 4 June 2020
Name: | Skeletal Muscle Satellite Cells, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11964 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11964
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11964
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.713 |
10 | 10 | 0.526 |
100 | 100 | 0.664 |
101 | 101 | 0.654 |
102 | 102 | 0.411 |
103 | 103 | 0.598 |
104 | 104 | 0.883 |
105 | 105 | 0.0522 |
106 | 106 | 0.00525 |
107 | 107 | 0.948 |
108 | 108 | 0.896 |
109 | 109 | 0.383 |
11 | 11 | 0.842 |
110 | 110 | 0.096 |
111 | 111 | 0.55 |
112 | 112 | 0.116 |
113 | 113 | 0.136 |
114 | 114 | 0.33 |
115 | 115 | 0.385 |
116 | 116 | 0.211 |
117 | 117 | 0.347 |
118 | 118 | 0.665 |
119 | 119 | 0.487 |
12 | 12 | 0.306 |
120 | 120 | 0.252 |
121 | 121 | 0.524 |
122 | 122 | 6.62767e-4 |
123 | 123 | 0.0148 |
124 | 124 | 0.0398 |
125 | 125 | 0.68 |
126 | 126 | 0.748 |
127 | 127 | 0.0663 |
128 | 128 | 0.966 |
129 | 129 | 0.078 |
13 | 13 | 0.88 |
130 | 130 | 0.448 |
131 | 131 | 0.806 |
132 | 132 | 0.311 |
133 | 133 | 0.955 |
134 | 134 | 0.464 |
135 | 135 | 0.054 |
136 | 136 | 0.179 |
137 | 137 | 0.0215 |
138 | 138 | 0.0492 |
139 | 139 | 0.218 |
14 | 14 | 0.363 |
140 | 140 | 0.219 |
141 | 141 | 0.503 |
142 | 142 | 0.819 |
143 | 143 | 0.0532 |
144 | 144 | 0.273 |
145 | 145 | 0.996 |
146 | 146 | 0.736 |
147 | 147 | 0.285 |
148 | 148 | 0.154 |
149 | 149 | 0.678 |
15 | 15 | 0.109 |
150 | 150 | 0.569 |
151 | 151 | 0.867 |
152 | 152 | 0.87 |
153 | 153 | 0.901 |
154 | 154 | 0.818 |
155 | 155 | 0.1 |
156 | 156 | 0.0236 |
157 | 157 | 0.31 |
158 | 158 | 0.0114 |
159 | 159 | 0.462 |
16 | 16 | 0.419 |
160 | 160 | 0.788 |
161 | 161 | 0.774 |
162 | 162 | 0.0452 |
163 | 163 | 0.936 |
164 | 164 | 0.256 |
165 | 165 | 0.642 |
166 | 166 | 0.0874 |
167 | 167 | 0.0976 |
168 | 168 | 0.175 |
169 | 169 | 0.312 |
17 | 17 | 0.323 |
18 | 18 | 0.611 |
19 | 19 | 0.0281 |
2 | 2 | 0.756 |
20 | 20 | 0.939 |
21 | 21 | 0.0733 |
22 | 22 | 0.631 |
23 | 23 | 0.169 |
24 | 24 | 0.185 |
25 | 25 | 0.171 |
26 | 26 | 0.383 |
27 | 27 | 0.644 |
28 | 28 | 0.196 |
29 | 29 | 0.668 |
3 | 3 | 1 |
30 | 30 | 0.81 |
31 | 31 | 0.805 |
32 | 32 | 1.47766e-9 |
33 | 33 | 0.993 |
34 | 34 | 0.845 |
35 | 35 | 0.223 |
36 | 36 | 0.038 |
37 | 37 | 0.473 |
38 | 38 | 0.405 |
39 | 39 | 0.474 |
4 | 4 | 0.216 |
40 | 40 | 0.0202 |
41 | 41 | 0.00107 |
42 | 42 | 0.55 |
43 | 43 | 0.439 |
44 | 44 | 0.453 |
45 | 45 | 0.227 |
46 | 46 | 0.825 |
47 | 47 | 0.931 |
48 | 48 | 0.972 |
49 | 49 | 0.18 |
5 | 5 | 0.134 |
50 | 50 | 0.583 |
51 | 51 | 0.945 |
52 | 52 | 0.587 |
53 | 53 | 0.241 |
54 | 54 | 0.792 |
55 | 55 | 0.635 |
56 | 56 | 0.837 |
57 | 57 | 0.57 |
58 | 58 | 0.0962 |
59 | 59 | 0.853 |
6 | 6 | 0.919 |
60 | 60 | 0.0688 |
61 | 61 | 0.788 |
62 | 62 | 0.0983 |
63 | 63 | 0.777 |
64 | 64 | 0.602 |
65 | 65 | 0.563 |
66 | 66 | 0.673 |
67 | 67 | 0.487 |
68 | 68 | 0.19 |
69 | 69 | 0.675 |
7 | 7 | 0.18 |
70 | 70 | 0.303 |
71 | 71 | 0.944 |
72 | 72 | 0.441 |
73 | 73 | 0.344 |
74 | 74 | 0.243 |
75 | 75 | 0.819 |
76 | 76 | 0.458 |
77 | 77 | 0.949 |
78 | 78 | 0.302 |
79 | 79 | 0.00944 |
8 | 8 | 0.821 |
80 | 80 | 0.0147 |
81 | 81 | 0.577 |
82 | 82 | 0.729 |
83 | 83 | 0.0476 |
84 | 84 | 0.801 |
85 | 85 | 0.0961 |
86 | 86 | 0.624 |
87 | 87 | 0.336 |
88 | 88 | 0.463 |
89 | 89 | 0.571 |
9 | 9 | 0.987 |
90 | 90 | 0.469 |
91 | 91 | 0.566 |
92 | 92 | 0.649 |
93 | 93 | 0.975 |
94 | 94 | 0.315 |
95 | 95 | 0.852 |
96 | 96 | 0.259 |
97 | 97 | 0.983 |
98 | 98 | 0.2 |
99 | 99 | 1.92586e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11964
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000165 human skeletal muscle satellite cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000035 (single fate stem cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000034 (stem cell)
0000594 (skeletal muscle satellite cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000165 (human skeletal muscle satellite cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)