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{{f5samples
{{f5samples
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|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004981
|accession_numbers=CAGE;DRX008218;DRR009090;DRZ000515;DRZ001900;DRZ011865;DRZ013250
|accession_numbers_RNASeq=sRNA-Seq;DRX037028;DRR041394;DRZ007036
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|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg38.nobarcode.ctss.bed.gz
|id=FF:11340-117F8
|id=FF:11340-117F8
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|library_id=CNhs11375
|library_id=CNhs11375
|library_id_phase_based=2:CNhs11375
|library_id_phase_based=2:CNhs11375
|microRNAs=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GTGGCC.11340
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11340
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GTGGCC.11340
|name=Endothelial Cells - Aortic, donor2
|name=Endothelial Cells - Aortic, donor2
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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Line 69: Line 82:
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|sample_category=primary cells
Line 92: Line 106:
|top_motifs=SOX{8,9,10}:1.69279531628;TLX1..3_NFIC{dimer}:1.39141467412;AR:1.19030531435;NFATC1..3:1.11344969271;RXR{A,B,G}:1.02087864582;GATA6:1.01743903575;SOX2:0.932125770505;TFAP4:0.895655390756;ZNF148:0.892224444632;ADNP_IRX_SIX_ZHX:0.856652597849;NANOG:0.787656806062;PAX1,9:0.761452882917;ETS1,2:0.703134787994;IKZF1:0.694487067444;XCPE1{core}:0.68861940087;HIC1:0.671617058513;CRX:0.670753412663;PAX6:0.664084243997;GTF2A1,2:0.662655834749;FOXL1:0.631554001346;LHX3,4:0.623873200104;TFAP2{A,C}:0.620975490178;RORA:0.620435029429;TP53:0.619188253609;SOX5:0.618506874454;PITX1..3:0.606411600992;LEF1_TCF7_TCF7L1,2:0.584835878759;PAX8:0.574395152731;HBP1_HMGB_SSRP1_UBTF:0.533447529986;HES1:0.518568260364;ZNF423:0.489599356842;ELF1,2,4:0.464665290633;SPIB:0.464213389273;CDC5L:0.42081218655;MTE{core}:0.396144070812;GATA4:0.393692750436;SOX17:0.377094024699;TFDP1:0.3732342004;HAND1,2:0.37194856061;TFAP2B:0.342235972808;POU3F1..4:0.337968038444;TEAD1:0.332246529646;NR3C1:0.33217658846;ZNF238:0.28887039044;GFI1B:0.26507456734;BACH2:0.261531520175;FOXA2:0.254155238188;NFE2:0.246893251982;PBX1:0.245929602716;ZFP161:0.225483009758;FOS_FOS{B,L1}_JUN{B,D}:0.212811585426;SP1:0.212216236345;NKX2-2,8:0.212053630306;GFI1:0.201022416102;bHLH_family:0.200845669071;GZF1:0.19829000066;PAX5:0.197599843282;IKZF2:0.168763918891;FOXM1:0.150902197182;HOX{A5,B5}:0.142713503223;SMAD1..7,9:0.142180423682;REST:0.135613206852;NR5A1,2:0.123335916325;ARID5B:0.117385982903;MYB:0.114851494132;FOXD3:0.111456633516;LMO2:0.106290598127;GLI1..3:0.105997568107;ZIC1..3:0.104128106432;ZBTB6:0.100459051275;FOX{I1,J2}:0.0808541160902;HNF4A_NR2F1,2:0.0797266300367;SRF:0.0778857160652;FOSL2:0.0719082886326;GTF2I:0.0708398814189;ONECUT1,2:0.0690297064401;E2F1..5:0.0685574063877;NFE2L1:0.0529008742895;SPZ1:0.0315938054164;NFE2L2:0.0287949094741;PPARG:0.0227990544231;MAZ:0.00673333277672;EBF1:0.00495866154014;NHLH1,2:0.00482662493968;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000666716855066;TFCP2:-0.0141515374882;MYOD1:-0.0194155712555;NKX3-2:-0.050825272979;MED-1{core}:-0.0599606880206;TBP:-0.080558556878;EGR1..3:-0.0879494971728;STAT5{A,B}:-0.0929854753876;SPI1:-0.0966848889348;NFY{A,B,C}:-0.114813025675;MEF2{A,B,C,D}:-0.122912667097;ESRRA:-0.123206630762;HOXA9_MEIS1:-0.145684113301;UFEwm:-0.148734082903;ZNF143:-0.149268165301;POU2F1..3:-0.15185078081;RREB1:-0.160704796784;POU1F1:-0.181016636951;STAT2,4,6:-0.182399908694;HNF1A:-0.184485349942;OCT4_SOX2{dimer}:-0.187843218657;KLF4:-0.210161065151;HMGA1,2:-0.21123103789;EN1,2:-0.215812599108;ALX1:-0.242714036305;PAX4:-0.246785023702;MTF1:-0.254854317662;T:-0.256406754769;PRRX1,2:-0.281790691094;PATZ1:-0.296003494928;PAX2:-0.310560955968;DBP:-0.342614488095;NFKB1_REL_RELA:-0.343928791114;PRDM1:-0.34436193759;JUN:-0.351751667073;MYBL2:-0.360730873613;MZF1:-0.367270546361;ATF2:-0.387407381223;HOX{A6,A7,B6,B7}:-0.402602797296;FOX{D1,D2}:-0.406815310575;SNAI1..3:-0.413221491359;PAX3,7:-0.415075265175;HLF:-0.421273475516;RFX1:-0.42768989222;CUX2:-0.428997196224;NRF1:-0.429642784346;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.430292409885;NKX2-3_NKX2-5:-0.434627215736;TAL1_TCF{3,4,12}:-0.436132655589;GCM1,2:-0.46977314743;TOPORS:-0.471698279486;HMX1:-0.476674676851;BPTF:-0.479243273477;RUNX1..3:-0.489689855645;EP300:-0.490435088973;TLX2:-0.497238023883;YY1:-0.513165120512;POU6F1:-0.516496881355;POU5F1:-0.517990191394;NR1H4:-0.532517143264;FOXO1,3,4:-0.534763010351;VSX1,2:-0.547942746429;RBPJ:-0.557648369297;EVI1:-0.576137635906;CEBPA,B_DDIT3:-0.581992417276;DMAP1_NCOR{1,2}_SMARC:-0.582353980005;FOXP1:-0.5846424957;ATF6:-0.618074204233;IRF1,2:-0.629101575952;TGIF1:-0.629191732671;FOXQ1:-0.631465168145;FOXP3:-0.632607328763;MYFfamily:-0.650886238975;IRF7:-0.654065755068;NFIL3:-0.655398492122;ZEB1:-0.676553876769;NANOG{mouse}:-0.689682481319;FOX{F1,F2,J1}:-0.690968102426;RXRA_VDR{dimer}:-0.727395762059;BREu{core}:-0.73478178678;AHR_ARNT_ARNT2:-0.73555403573;ALX4:-0.743363643789;ZBTB16:-0.74474322496;XBP1:-0.790579606292;TEF:-0.798332315679;HSF1,2:-0.805458920313;ELK1,4_GABP{A,B1}:-0.850577476236;STAT1,3:-0.860085707526;HIF1A:-0.876512825325;FOXN1:-0.929450154423;ESR1:-0.939493726614;AIRE:-0.973803122586;NFIX:-0.980518077377;SREBF1,2:-1.01908737443;ZNF384:-1.02199317113;NKX6-1,2:-1.02954706463;ATF5_CREB3:-1.07919970717;TBX4,5:-1.11633565775;PDX1:-1.12339058341;NR6A1:-1.13591060547;RFX2..5_RFXANK_RFXAP:-1.13615724112;CDX1,2,4:-1.14662843318;ATF4:-1.16740772926;NKX3-1:-1.17148424149;MAFB:-1.17609766675;NKX2-1,4:-1.1954717908;CREB1:-1.20898202503;HOX{A4,D4}:-1.40712173386
|top_motifs=SOX{8,9,10}:1.69279531628;TLX1..3_NFIC{dimer}:1.39141467412;AR:1.19030531435;NFATC1..3:1.11344969271;RXR{A,B,G}:1.02087864582;GATA6:1.01743903575;SOX2:0.932125770505;TFAP4:0.895655390756;ZNF148:0.892224444632;ADNP_IRX_SIX_ZHX:0.856652597849;NANOG:0.787656806062;PAX1,9:0.761452882917;ETS1,2:0.703134787994;IKZF1:0.694487067444;XCPE1{core}:0.68861940087;HIC1:0.671617058513;CRX:0.670753412663;PAX6:0.664084243997;GTF2A1,2:0.662655834749;FOXL1:0.631554001346;LHX3,4:0.623873200104;TFAP2{A,C}:0.620975490178;RORA:0.620435029429;TP53:0.619188253609;SOX5:0.618506874454;PITX1..3:0.606411600992;LEF1_TCF7_TCF7L1,2:0.584835878759;PAX8:0.574395152731;HBP1_HMGB_SSRP1_UBTF:0.533447529986;HES1:0.518568260364;ZNF423:0.489599356842;ELF1,2,4:0.464665290633;SPIB:0.464213389273;CDC5L:0.42081218655;MTE{core}:0.396144070812;GATA4:0.393692750436;SOX17:0.377094024699;TFDP1:0.3732342004;HAND1,2:0.37194856061;TFAP2B:0.342235972808;POU3F1..4:0.337968038444;TEAD1:0.332246529646;NR3C1:0.33217658846;ZNF238:0.28887039044;GFI1B:0.26507456734;BACH2:0.261531520175;FOXA2:0.254155238188;NFE2:0.246893251982;PBX1:0.245929602716;ZFP161:0.225483009758;FOS_FOS{B,L1}_JUN{B,D}:0.212811585426;SP1:0.212216236345;NKX2-2,8:0.212053630306;GFI1:0.201022416102;bHLH_family:0.200845669071;GZF1:0.19829000066;PAX5:0.197599843282;IKZF2:0.168763918891;FOXM1:0.150902197182;HOX{A5,B5}:0.142713503223;SMAD1..7,9:0.142180423682;REST:0.135613206852;NR5A1,2:0.123335916325;ARID5B:0.117385982903;MYB:0.114851494132;FOXD3:0.111456633516;LMO2:0.106290598127;GLI1..3:0.105997568107;ZIC1..3:0.104128106432;ZBTB6:0.100459051275;FOX{I1,J2}:0.0808541160902;HNF4A_NR2F1,2:0.0797266300367;SRF:0.0778857160652;FOSL2:0.0719082886326;GTF2I:0.0708398814189;ONECUT1,2:0.0690297064401;E2F1..5:0.0685574063877;NFE2L1:0.0529008742895;SPZ1:0.0315938054164;NFE2L2:0.0287949094741;PPARG:0.0227990544231;MAZ:0.00673333277672;EBF1:0.00495866154014;NHLH1,2:0.00482662493968;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000666716855066;TFCP2:-0.0141515374882;MYOD1:-0.0194155712555;NKX3-2:-0.050825272979;MED-1{core}:-0.0599606880206;TBP:-0.080558556878;EGR1..3:-0.0879494971728;STAT5{A,B}:-0.0929854753876;SPI1:-0.0966848889348;NFY{A,B,C}:-0.114813025675;MEF2{A,B,C,D}:-0.122912667097;ESRRA:-0.123206630762;HOXA9_MEIS1:-0.145684113301;UFEwm:-0.148734082903;ZNF143:-0.149268165301;POU2F1..3:-0.15185078081;RREB1:-0.160704796784;POU1F1:-0.181016636951;STAT2,4,6:-0.182399908694;HNF1A:-0.184485349942;OCT4_SOX2{dimer}:-0.187843218657;KLF4:-0.210161065151;HMGA1,2:-0.21123103789;EN1,2:-0.215812599108;ALX1:-0.242714036305;PAX4:-0.246785023702;MTF1:-0.254854317662;T:-0.256406754769;PRRX1,2:-0.281790691094;PATZ1:-0.296003494928;PAX2:-0.310560955968;DBP:-0.342614488095;NFKB1_REL_RELA:-0.343928791114;PRDM1:-0.34436193759;JUN:-0.351751667073;MYBL2:-0.360730873613;MZF1:-0.367270546361;ATF2:-0.387407381223;HOX{A6,A7,B6,B7}:-0.402602797296;FOX{D1,D2}:-0.406815310575;SNAI1..3:-0.413221491359;PAX3,7:-0.415075265175;HLF:-0.421273475516;RFX1:-0.42768989222;CUX2:-0.428997196224;NRF1:-0.429642784346;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.430292409885;NKX2-3_NKX2-5:-0.434627215736;TAL1_TCF{3,4,12}:-0.436132655589;GCM1,2:-0.46977314743;TOPORS:-0.471698279486;HMX1:-0.476674676851;BPTF:-0.479243273477;RUNX1..3:-0.489689855645;EP300:-0.490435088973;TLX2:-0.497238023883;YY1:-0.513165120512;POU6F1:-0.516496881355;POU5F1:-0.517990191394;NR1H4:-0.532517143264;FOXO1,3,4:-0.534763010351;VSX1,2:-0.547942746429;RBPJ:-0.557648369297;EVI1:-0.576137635906;CEBPA,B_DDIT3:-0.581992417276;DMAP1_NCOR{1,2}_SMARC:-0.582353980005;FOXP1:-0.5846424957;ATF6:-0.618074204233;IRF1,2:-0.629101575952;TGIF1:-0.629191732671;FOXQ1:-0.631465168145;FOXP3:-0.632607328763;MYFfamily:-0.650886238975;IRF7:-0.654065755068;NFIL3:-0.655398492122;ZEB1:-0.676553876769;NANOG{mouse}:-0.689682481319;FOX{F1,F2,J1}:-0.690968102426;RXRA_VDR{dimer}:-0.727395762059;BREu{core}:-0.73478178678;AHR_ARNT_ARNT2:-0.73555403573;ALX4:-0.743363643789;ZBTB16:-0.74474322496;XBP1:-0.790579606292;TEF:-0.798332315679;HSF1,2:-0.805458920313;ELK1,4_GABP{A,B1}:-0.850577476236;STAT1,3:-0.860085707526;HIF1A:-0.876512825325;FOXN1:-0.929450154423;ESR1:-0.939493726614;AIRE:-0.973803122586;NFIX:-0.980518077377;SREBF1,2:-1.01908737443;ZNF384:-1.02199317113;NKX6-1,2:-1.02954706463;ATF5_CREB3:-1.07919970717;TBX4,5:-1.11633565775;PDX1:-1.12339058341;NR6A1:-1.13591060547;RFX2..5_RFXANK_RFXAP:-1.13615724112;CDX1,2,4:-1.14662843318;ATF4:-1.16740772926;NKX3-1:-1.17148424149;MAFB:-1.17609766675;NKX2-1,4:-1.1954717908;CREB1:-1.20898202503;HOX{A4,D4}:-1.40712173386
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11340-117F8;search_select_hide=table117:FF:11340-117F8
}}
}}

Latest revision as of 17:53, 4 June 2020

Name:Endothelial Cells - Aortic, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11375
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage56 years old adult
sexfemale
age56
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1508
catalog numberCA304-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004981
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11375 CAGE DRX008218 DRR009090
Accession ID Hg19

Library idBAMCTSS
CNhs11375 DRZ000515 DRZ001900
Accession ID Hg38

Library idBAMCTSS
CNhs11375 DRZ011865 DRZ013250
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004981
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.GTGGCC sRNA-Seq DRX037028 DRR041394
Accession ID Hg19

Library idBAMCTSS
SRhi10003.GTGGCC DRZ007036


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0713
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.202
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.437
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0459
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.283
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0686
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0787
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0174
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.228
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0294
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.269
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.378
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.65
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.129
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11375

Jaspar motifP-value
MA0002.20.466
MA0003.10.359
MA0004.10.692
MA0006.10.0678
MA0007.10.0246
MA0009.10.475
MA0014.10.86
MA0017.10.238
MA0018.24.32923e-6
MA0019.10.425
MA0024.10.488
MA0025.10.555
MA0027.10.961
MA0028.10.011
MA0029.10.392
MA0030.10.503
MA0031.10.459
MA0035.20.00178
MA0038.10.815
MA0039.20.195
MA0040.10.251
MA0041.10.0732
MA0042.10.65
MA0043.12.98206e-8
MA0046.10.352
MA0047.20.399
MA0048.10.47
MA0050.13.42663e-4
MA0051.10.0348
MA0052.10.999
MA0055.10.104
MA0057.10.0945
MA0058.10.237
MA0059.10.942
MA0060.10.348
MA0061.10.275
MA0062.20.00199
MA0065.20.506
MA0066.10.88
MA0067.10.00637
MA0068.10.894
MA0069.10.265
MA0070.10.996
MA0071.10.374
MA0072.10.261
MA0073.10.395
MA0074.10.899
MA0076.18.34533e-5
MA0077.19.99611e-6
MA0078.10.015
MA0079.20.248
MA0080.23.8535e-4
MA0081.10.118
MA0083.10.221
MA0084.10.613
MA0087.10.264
MA0088.10.627
MA0090.10.132
MA0091.10.284
MA0092.10.318
MA0093.10.536
MA0099.24.41357e-12
MA0100.10.329
MA0101.10.505
MA0102.26.16765e-5
MA0103.10.553
MA0104.20.105
MA0105.10.729
MA0106.16.27341e-4
MA0107.10.71
MA0108.20.905
MA0111.10.673
MA0112.20.498
MA0113.10.263
MA0114.10.843
MA0115.10.543
MA0116.10.784
MA0117.10.287
MA0119.10.00227
MA0122.10.069
MA0124.10.159
MA0125.10.952
MA0131.10.436
MA0135.10.755
MA0136.10.0146
MA0137.20.0263
MA0138.20.984
MA0139.10.435
MA0140.10.00442
MA0141.10.0536
MA0142.10.388
MA0143.10.858
MA0144.10.927
MA0145.10.0543
MA0146.10.317
MA0147.10.434
MA0148.10.0447
MA0149.10.0186
MA0150.10.131
MA0152.10.597
MA0153.10.379
MA0154.10.633
MA0155.10.0217
MA0156.10.0342
MA0157.10.674
MA0159.10.517
MA0160.10.419
MA0162.10.0905
MA0163.10.495
MA0164.10.598
MA0258.10.568
MA0259.10.281



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11375

Novel motifP-value
10.503
100.226
1000.946
1010.537
1020.82
1030.695
1040.889
1050.633
1060.0356
1070.00135
1080.605
1090.144
110.118
1100.0315
1110.0812
1120.672
1130.708
1140.136
1150.822
1160.908
1170.804
1180.521
1190.38
120.629
1200.102
1210.665
1220.781
1230.501
1240.494
1250.856
1260.64
1270.991
1280.331
1290.378
130.86
1300.876
1310.599
1320.297
1330.419
1340.575
1350.262
1360.33
1370.252
1380.739
1390.874
140.987
1400.847
1410.444
1420.411
1430.128
1440.482
1450.0333
1460.285
1470.157
1480.404
1490.0174
150.656
1500.184
1510.405
1520.0159
1530.265
1540.618
1550.676
1560.0699
1570.705
1580.173
1590.608
160.832
1600.0118
1610.268
1620.511
1630.875
1640.638
1650.426
1660.489
1670.0302
1680.263
1690.0513
170.119
180.8
190.114
20.459
200.926
210.954
220.216
230.0613
240.446
250.504
260.732
270.454
280.161
290.539
30.665
300.793
310.949
320.609
330.354
340.114
350.329
360.262
370.505
380.106
390.199
40.606
400.00484
410.0501
420.365
430.575
440.635
450.213
460.207
470.371
480.047
490.732
50.726
500.587
510.574
520.477
530.878
540.489
550.78
560.492
570.213
580.423
590.173
60.28
600.538
610.707
620.983
630.135
640.525
650.0992
660.102
670.639
680.221
690.226
70.677
700.878
710.925
720.757
730.00455
740.478
750.47
760.362
770.119
780.67
790.73
80.0375
800.274
810.506
820.94
830.546
840.242
850.977
860.771
870.312
880.986
890.505
90.191
900.733
910.306
920.301
930.952
940.815
950.312
960.271
970.505
980.189
990.00223



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11375


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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