FF:11507-119G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005295 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005295 | ||
|accession_numbers=CAGE;DRX008237;DRR009109;DRZ000534;DRZ001919;DRZ011884;DRZ013269 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037166;DRR041532;DRZ007174 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001043,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0001555,UBERON:0001041,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002252 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000056 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11507-119G4 | |id=FF:11507-119G4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000056 | ||
|is_obsolete= | |||
|library_id=CNhs11323 | |||
|library_id_phase_based=2:CNhs11323 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11507 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.TGACCA.11507 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11507 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.TGACCA.11507 | |||
|name=Esophageal Epithelial Cells, donor1 | |name=Esophageal Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11323,LSID768,release014,COMPLETED | |profile_hcage=CNhs11323,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.112031451361074,0.157182883491893,0.230130729864803,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.326062825998326,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.157182883491893,0,0.0112831665258802,0,0,0,0.502491339019997,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.157182883491893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0315450223280828,0,0,0,0.0237937673066271,0.0679506935539195,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0177821521765144,0,0,0,0.0189186046883124,0.162880734576031,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC2705 | |rna_catalog_number=SC2705 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119G4 | |rna_tube_id=119G4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.TGACCA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.28252607327287e-207!GO:0005737;cytoplasm;3.65323814819331e-191!GO:0043226;organelle;2.22927995231106e-156!GO:0043229;intracellular organelle;5.05692502667608e-156!GO:0043231;intracellular membrane-bound organelle;6.111150462716e-145!GO:0043227;membrane-bound organelle;1.44850740174969e-144!GO:0044444;cytoplasmic part;5.05010414532279e-131!GO:0044422;organelle part;6.15420436026468e-123!GO:0044446;intracellular organelle part;6.04954784090556e-122!GO:0032991;macromolecular complex;1.58491740410986e-77!GO:0030529;ribonucleoprotein complex;5.42450303706661e-73!GO:0005739;mitochondrion;1.94594226125063e-72!GO:0044237;cellular metabolic process;7.6490255196093e-72!GO:0044238;primary metabolic process;2.12951887901759e-71!GO:0005515;protein binding;4.32362703641743e-65!GO:0043170;macromolecule metabolic process;3.40306685029175e-59!GO:0043233;organelle lumen;4.79571755726638e-57!GO:0031974;membrane-enclosed lumen;4.79571755726638e-57!GO:0005840;ribosome;2.44315385005284e-54!GO:0009058;biosynthetic process;1.69896712670807e-49!GO:0031090;organelle membrane;2.75162200512623e-49!GO:0003735;structural constituent of ribosome;2.98426952854937e-49!GO:0044429;mitochondrial part;4.32710014606477e-49!GO:0006412;translation;6.26303891952564e-49!GO:0019538;protein metabolic process;5.78649711352889e-48!GO:0044428;nuclear part;1.83010843956166e-46!GO:0044249;cellular biosynthetic process;1.83010843956166e-46!GO:0003723;RNA binding;1.87452713236845e-46!GO:0005634;nucleus;5.89871511157502e-42!GO:0033279;ribosomal subunit;9.4388789468366e-42!GO:0044260;cellular macromolecule metabolic process;9.80859691152958e-42!GO:0044267;cellular protein metabolic process;1.41968642933139e-41!GO:0009059;macromolecule biosynthetic process;1.61183719365188e-39!GO:0043234;protein complex;2.00161781079913e-38!GO:0005829;cytosol;6.88568348592596e-38!GO:0031967;organelle envelope;1.05824673475998e-37!GO:0031975;envelope;2.46396421781342e-37!GO:0016043;cellular component organization and biogenesis;1.4244348055665e-36!GO:0015031;protein transport;2.75433102425936e-34!GO:0033036;macromolecule localization;5.76367467849814e-34!GO:0043228;non-membrane-bound organelle;2.75488656662637e-32!GO:0043232;intracellular non-membrane-bound organelle;2.75488656662637e-32!GO:0005740;mitochondrial envelope;4.36568599261254e-32!GO:0008104;protein localization;6.36653848576464e-32!GO:0045184;establishment of protein localization;3.39218997633563e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.12657495723698e-31!GO:0006396;RNA processing;7.60522355840576e-31!GO:0031966;mitochondrial membrane;1.40886452826992e-29!GO:0031981;nuclear lumen;1.79003776120101e-29!GO:0065003;macromolecular complex assembly;7.08699037757527e-29!GO:0019866;organelle inner membrane;6.54556402867184e-28!GO:0005743;mitochondrial inner membrane;9.86644620778129e-27!GO:0043283;biopolymer metabolic process;1.23003030158089e-26!GO:0006996;organelle organization and biogenesis;7.74633904997586e-26!GO:0046907;intracellular transport;8.27632706978753e-26!GO:0022607;cellular component assembly;1.24654990949279e-25!GO:0044445;cytosolic part;6.52335885172328e-25!GO:0016071;mRNA metabolic process;5.76558011688198e-24!GO:0010467;gene expression;1.3024487091776e-23!GO:0006886;intracellular protein transport;9.87229613777777e-23!GO:0008380;RNA splicing;3.52422860111855e-22!GO:0015935;small ribosomal subunit;1.09391453973607e-21!GO:0031980;mitochondrial lumen;3.35526274433069e-21!GO:0005759;mitochondrial matrix;3.35526274433069e-21!GO:0015934;large ribosomal subunit;4.37848542708027e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.1637913993781e-20!GO:0005783;endoplasmic reticulum;3.33975779077536e-20!GO:0006397;mRNA processing;3.38483890943271e-20!GO:0006119;oxidative phosphorylation;3.38867381996258e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.53951137161148e-20!GO:0006259;DNA metabolic process;2.05811170846783e-19!GO:0044455;mitochondrial membrane part;2.32270965861655e-19!GO:0012505;endomembrane system;1.53267918443819e-18!GO:0005654;nucleoplasm;1.68482494897848e-17!GO:0051186;cofactor metabolic process;3.28048124765099e-17!GO:0044432;endoplasmic reticulum part;4.50574182970596e-17!GO:0005681;spliceosome;8.30932885344192e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.66737414829811e-16!GO:0048770;pigment granule;2.66737414829811e-16!GO:0042470;melanosome;2.66737414829811e-16!GO:0006457;protein folding;4.50373374959011e-16!GO:0016874;ligase activity;5.15883680949232e-16!GO:0005746;mitochondrial respiratory chain;7.16013891943998e-16!GO:0051641;cellular localization;1.52128039919653e-15!GO:0051649;establishment of cellular localization;1.77854163669852e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.7379067522909e-15!GO:0044451;nucleoplasm part;4.60252340143962e-15!GO:0007049;cell cycle;9.19697386772003e-15!GO:0012501;programmed cell death;9.71387397000209e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.26083046370655e-14!GO:0006915;apoptosis;1.46450326077133e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.5023504317921e-14!GO:0003954;NADH dehydrogenase activity;1.5023504317921e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.5023504317921e-14!GO:0005761;mitochondrial ribosome;1.55534462015766e-14!GO:0000313;organellar ribosome;1.55534462015766e-14!GO:0006732;coenzyme metabolic process;3.20891248526189e-14!GO:0005794;Golgi apparatus;6.47763060871934e-14!GO:0008134;transcription factor binding;8.67250644818831e-14!GO:0006605;protein targeting;3.40309954179701e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.6647987888079e-13!GO:0042773;ATP synthesis coupled electron transport;4.6647987888079e-13!GO:0008219;cell death;4.83668424510296e-13!GO:0016265;death;4.83668424510296e-13!GO:0044248;cellular catabolic process;4.93550772355326e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.90902449518225e-13!GO:0044265;cellular macromolecule catabolic process;6.36836312577024e-13!GO:0005789;endoplasmic reticulum membrane;7.2937724632524e-13!GO:0005730;nucleolus;7.44124878677006e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.91151002574105e-13!GO:0009057;macromolecule catabolic process;1.0819210375068e-12!GO:0016462;pyrophosphatase activity;1.1021999324279e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.10842144227413e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;1.14531526779515e-12!GO:0043412;biopolymer modification;1.29268459728187e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.35371057309642e-12!GO:0045271;respiratory chain complex I;1.35371057309642e-12!GO:0005747;mitochondrial respiratory chain complex I;1.35371057309642e-12!GO:0006512;ubiquitin cycle;1.42647994900341e-12!GO:0043285;biopolymer catabolic process;1.79912807304619e-12!GO:0022618;protein-RNA complex assembly;2.30672855900256e-12!GO:0000166;nucleotide binding;4.31061528121824e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.3375773082144e-12!GO:0017111;nucleoside-triphosphatase activity;6.54047540599797e-12!GO:0009055;electron carrier activity;8.41595670694997e-12!GO:0006464;protein modification process;1.42395108499152e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.52137183599555e-11!GO:0051082;unfolded protein binding;3.56373326158991e-11!GO:0022402;cell cycle process;7.66436976718373e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;8.70666400434464e-11!GO:0043067;regulation of programmed cell death;9.4958775337238e-11!GO:0042981;regulation of apoptosis;1.07428380400677e-10!GO:0019941;modification-dependent protein catabolic process;1.24502094736591e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.24502094736591e-10!GO:0044257;cellular protein catabolic process;1.54531296617684e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.60637958196996e-10!GO:0006511;ubiquitin-dependent protein catabolic process;1.72674294591398e-10!GO:0030163;protein catabolic process;2.0098864877663e-10!GO:0016491;oxidoreductase activity;2.33779661695787e-10!GO:0048193;Golgi vesicle transport;2.57857237732299e-10!GO:0006461;protein complex assembly;2.59115123803919e-10!GO:0008135;translation factor activity, nucleic acid binding;4.74149493981277e-10!GO:0043687;post-translational protein modification;7.2638031037493e-10!GO:0006323;DNA packaging;7.89159675251601e-10!GO:0051276;chromosome organization and biogenesis;1.94535779243841e-09!GO:0051188;cofactor biosynthetic process;1.98461351067161e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.98461351067161e-09!GO:0000375;RNA splicing, via transesterification reactions;1.98461351067161e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.98461351067161e-09!GO:0016192;vesicle-mediated transport;2.82557191162557e-09!GO:0000278;mitotic cell cycle;3.27564683920963e-09!GO:0000074;regulation of progression through cell cycle;4.34840416080869e-09!GO:0051726;regulation of cell cycle;6.08316118804286e-09!GO:0009056;catabolic process;1.05377757579579e-08!GO:0006163;purine nucleotide metabolic process;1.14896111018634e-08!GO:0048523;negative regulation of cellular process;1.39980188040744e-08!GO:0042254;ribosome biogenesis and assembly;1.42596135330292e-08!GO:0017076;purine nucleotide binding;1.49263712614373e-08!GO:0003712;transcription cofactor activity;1.54303127201129e-08!GO:0032553;ribonucleotide binding;1.64131983998446e-08!GO:0032555;purine ribonucleotide binding;1.64131983998446e-08!GO:0009259;ribonucleotide metabolic process;1.69833926133084e-08!GO:0005768;endosome;2.62707886377415e-08!GO:0005793;ER-Golgi intermediate compartment;2.93053850565573e-08!GO:0006913;nucleocytoplasmic transport;2.96396707680005e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.43814781893825e-08!GO:0009150;purine ribonucleotide metabolic process;3.53393488330213e-08!GO:0006399;tRNA metabolic process;3.89938185049052e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.76863346953407e-08!GO:0006164;purine nucleotide biosynthetic process;4.93185779606894e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.40531207437087e-08!GO:0051169;nuclear transport;5.48682475032463e-08!GO:0007005;mitochondrion organization and biogenesis;5.60297678974388e-08!GO:0006974;response to DNA damage stimulus;6.44409197114184e-08!GO:0009141;nucleoside triphosphate metabolic process;6.73764534889976e-08!GO:0017038;protein import;7.14674584451821e-08!GO:0006366;transcription from RNA polymerase II promoter;7.3864034047371e-08!GO:0000785;chromatin;8.61115204559107e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.71337261453636e-08!GO:0030532;small nuclear ribonucleoprotein complex;9.53465533273536e-08!GO:0048519;negative regulation of biological process;1.06272644415084e-07!GO:0009260;ribonucleotide biosynthetic process;1.10686520111877e-07!GO:0006413;translational initiation;1.31881185113112e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.46275418345904e-07!GO:0008639;small protein conjugating enzyme activity;1.46275418345904e-07!GO:0006333;chromatin assembly or disassembly;1.54964375186404e-07!GO:0003743;translation initiation factor activity;1.71335211974768e-07!GO:0043069;negative regulation of programmed cell death;1.86302703919471e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.12979120892754e-07!GO:0005635;nuclear envelope;2.15761105119848e-07!GO:0004842;ubiquitin-protein ligase activity;2.38738560052466e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.69784468568198e-07!GO:0009108;coenzyme biosynthetic process;3.04125395370497e-07!GO:0065004;protein-DNA complex assembly;3.10001404297773e-07!GO:0016604;nuclear body;3.19953720194339e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.41369567835104e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.41369567835104e-07!GO:0006446;regulation of translational initiation;3.41546712562262e-07!GO:0005694;chromosome;3.71446692702429e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.71446692702429e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.71446692702429e-07!GO:0044427;chromosomal part;3.75866854014624e-07!GO:0008565;protein transporter activity;3.99210507228225e-07!GO:0043066;negative regulation of apoptosis;4.19411157765426e-07!GO:0009060;aerobic respiration;4.19411157765426e-07!GO:0006916;anti-apoptosis;5.14314456354877e-07!GO:0016740;transferase activity;5.26275458821669e-07!GO:0019787;small conjugating protein ligase activity;5.76041212571073e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.11807280436596e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.11807280436596e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.17731831002652e-07!GO:0004812;aminoacyl-tRNA ligase activity;6.17731831002652e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.17731831002652e-07!GO:0009117;nucleotide metabolic process;6.4439028121651e-07!GO:0030120;vesicle coat;6.46507643415998e-07!GO:0030662;coated vesicle membrane;6.46507643415998e-07!GO:0016070;RNA metabolic process;7.20560702634576e-07!GO:0003676;nucleic acid binding;7.67428951809179e-07!GO:0015986;ATP synthesis coupled proton transport;8.83509574521779e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.83509574521779e-07!GO:0031497;chromatin assembly;8.83509574521779e-07!GO:0048475;coated membrane;9.19312995860876e-07!GO:0030117;membrane coat;9.19312995860876e-07!GO:0005524;ATP binding;1.15861732056134e-06!GO:0043038;amino acid activation;1.29258212990164e-06!GO:0006418;tRNA aminoacylation for protein translation;1.29258212990164e-06!GO:0043039;tRNA aminoacylation;1.29258212990164e-06!GO:0006334;nucleosome assembly;1.31509908899232e-06!GO:0032559;adenyl ribonucleotide binding;1.3433091339174e-06!GO:0030554;adenyl nucleotide binding;1.45847878544418e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.55556880096797e-06!GO:0016881;acid-amino acid ligase activity;2.14091459921945e-06!GO:0051246;regulation of protein metabolic process;2.14825144649903e-06!GO:0045333;cellular respiration;2.16162203670325e-06!GO:0009719;response to endogenous stimulus;2.16162203670325e-06!GO:0003924;GTPase activity;2.16708484543816e-06!GO:0045259;proton-transporting ATP synthase complex;2.19036880270935e-06!GO:0006752;group transfer coenzyme metabolic process;2.40635530633037e-06!GO:0044431;Golgi apparatus part;2.44056476035895e-06!GO:0031965;nuclear membrane;2.60730038238743e-06!GO:0019829;cation-transporting ATPase activity;3.23267273579148e-06!GO:0006091;generation of precursor metabolites and energy;3.74001232613708e-06!GO:0005773;vacuole;3.88803048923064e-06!GO:0006260;DNA replication;3.88803048923064e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.94270576107656e-06!GO:0006281;DNA repair;4.0534309364808e-06!GO:0046034;ATP metabolic process;4.30680417186912e-06!GO:0008654;phospholipid biosynthetic process;5.10596994533326e-06!GO:0065002;intracellular protein transport across a membrane;5.2467701928626e-06!GO:0044453;nuclear membrane part;5.5380014930388e-06!GO:0008610;lipid biosynthetic process;5.62416713300329e-06!GO:0006364;rRNA processing;6.18275909293198e-06!GO:0006754;ATP biosynthetic process;6.41534845361848e-06!GO:0006753;nucleoside phosphate metabolic process;6.41534845361848e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.60590380912481e-06!GO:0016072;rRNA metabolic process;8.53354192314405e-06!GO:0048522;positive regulation of cellular process;9.39167984066344e-06!GO:0005762;mitochondrial large ribosomal subunit;9.97937007208638e-06!GO:0000315;organellar large ribosomal subunit;9.97937007208638e-06!GO:0022403;cell cycle phase;1.08854786265245e-05!GO:0007067;mitosis;1.21766194910871e-05!GO:0000087;M phase of mitotic cell cycle;1.21766194910871e-05!GO:0031324;negative regulation of cellular metabolic process;1.32198743497738e-05!GO:0016607;nuclear speck;1.35407993286174e-05!GO:0006099;tricarboxylic acid cycle;1.40401779783604e-05!GO:0046356;acetyl-CoA catabolic process;1.40401779783604e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.47639480234752e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.48683237360389e-05!GO:0043623;cellular protein complex assembly;1.53082884433493e-05!GO:0032446;protein modification by small protein conjugation;1.85443922146163e-05!GO:0042623;ATPase activity, coupled;1.85719478020845e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.88446528952321e-05!GO:0016567;protein ubiquitination;1.89722855909338e-05!GO:0016568;chromatin modification;1.90875469720962e-05!GO:0006793;phosphorus metabolic process;2.4011325755925e-05!GO:0006796;phosphate metabolic process;2.4011325755925e-05!GO:0005788;endoplasmic reticulum lumen;2.46317541049334e-05!GO:0044440;endosomal part;2.46490768238445e-05!GO:0010008;endosome membrane;2.46490768238445e-05!GO:0000323;lytic vacuole;2.51172821162523e-05!GO:0005764;lysosome;2.51172821162523e-05!GO:0006084;acetyl-CoA metabolic process;2.52274634197989e-05!GO:0016787;hydrolase activity;2.77794371911334e-05!GO:0009109;coenzyme catabolic process;2.78420026463674e-05!GO:0042802;identical protein binding;2.89896681525969e-05!GO:0006888;ER to Golgi vesicle-mediated transport;3.03527595027697e-05!GO:0045786;negative regulation of progression through cell cycle;3.87474026134272e-05!GO:0016126;sterol biosynthetic process;3.9166852530789e-05!GO:0000139;Golgi membrane;3.96964260192051e-05!GO:0019843;rRNA binding;3.98499465037707e-05!GO:0051170;nuclear import;4.30808811366456e-05!GO:0006082;organic acid metabolic process;4.80375653616603e-05!GO:0016779;nucleotidyltransferase activity;5.05856137832931e-05!GO:0019752;carboxylic acid metabolic process;5.66559106471312e-05!GO:0016887;ATPase activity;6.15917874558146e-05!GO:0051187;cofactor catabolic process;6.3674854382318e-05!GO:0004298;threonine endopeptidase activity;6.81098197576697e-05!GO:0006606;protein import into nucleus;7.10296083502083e-05!GO:0016853;isomerase activity;7.51854682000795e-05!GO:0030176;integral to endoplasmic reticulum membrane;8.13595479305368e-05!GO:0045454;cell redox homeostasis;8.70366472227306e-05!GO:0005770;late endosome;8.71420438022432e-05!GO:0016564;transcription repressor activity;8.75781767630807e-05!GO:0016023;cytoplasmic membrane-bound vesicle;8.92187456338221e-05!GO:0005643;nuclear pore;9.00840650685741e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.01147169708809e-05!GO:0065009;regulation of a molecular function;9.68619222505422e-05!GO:0000245;spliceosome assembly;0.000107999807537993!GO:0031252;leading edge;0.00011423306200948!GO:0009892;negative regulation of metabolic process;0.000118954159291782!GO:0000314;organellar small ribosomal subunit;0.000137139672673979!GO:0005763;mitochondrial small ribosomal subunit;0.000137139672673979!GO:0005667;transcription factor complex;0.000137882008276979!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000147558432059393!GO:0003697;single-stranded DNA binding;0.000147618620893114!GO:0031988;membrane-bound vesicle;0.000149275291389156!GO:0005525;GTP binding;0.000159694315185081!GO:0003714;transcription corepressor activity;0.000164058233144128!GO:0016310;phosphorylation;0.000181393962040369!GO:0030118;clathrin coat;0.000188823893116529!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000196121461697948!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000204140361111585!GO:0043065;positive regulation of apoptosis;0.000227746128351852!GO:0009967;positive regulation of signal transduction;0.00023280933244668!GO:0005905;coated pit;0.000251351585186018!GO:0043068;positive regulation of programmed cell death;0.000276157464432697!GO:0016044;membrane organization and biogenesis;0.000323456424119532!GO:0000786;nucleosome;0.000323626357706801!GO:0003713;transcription coactivator activity;0.000328770668484682!GO:0051427;hormone receptor binding;0.000339855159223209!GO:0005769;early endosome;0.000346158164731334!GO:0016859;cis-trans isomerase activity;0.000349557481176527!GO:0003899;DNA-directed RNA polymerase activity;0.000349557481176527!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000357865977843758!GO:0016481;negative regulation of transcription;0.00038015267931407!GO:0048518;positive regulation of biological process;0.000389219684934272!GO:0030132;clathrin coat of coated pit;0.000390834653425077!GO:0006695;cholesterol biosynthetic process;0.000393317980826641!GO:0007264;small GTPase mediated signal transduction;0.000397566591339984!GO:0005798;Golgi-associated vesicle;0.000407931771807135!GO:0046474;glycerophospholipid biosynthetic process;0.000413266078005086!GO:0006979;response to oxidative stress;0.000419387444019917!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000420341146276432!GO:0030867;rough endoplasmic reticulum membrane;0.000439034285442737!GO:0033116;ER-Golgi intermediate compartment membrane;0.000451014783579557!GO:0050794;regulation of cellular process;0.00048275180133982!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000484372836104914!GO:0030119;AP-type membrane coat adaptor complex;0.000560190866139003!GO:0051329;interphase of mitotic cell cycle;0.000567386377951389!GO:0016563;transcription activator activity;0.000570616381600155!GO:0046930;pore complex;0.000596109188179241!GO:0035257;nuclear hormone receptor binding;0.000602417801390644!GO:0008250;oligosaccharyl transferase complex;0.000630253384432539!GO:0000279;M phase;0.000732372456584522!GO:0043681;protein import into mitochondrion;0.000773140661862393!GO:0044255;cellular lipid metabolic process;0.000806806206346624!GO:0050662;coenzyme binding;0.000819884509387765!GO:0031968;organelle outer membrane;0.000845341500853892!GO:0006839;mitochondrial transport;0.000867357070473178!GO:0048468;cell development;0.000883102621320282!GO:0019867;outer membrane;0.000942956093541339!GO:0044262;cellular carbohydrate metabolic process;0.000948160674453528!GO:0030131;clathrin adaptor complex;0.000976403783548165!GO:0019899;enzyme binding;0.000993664581297328!GO:0005741;mitochondrial outer membrane;0.00107137632356478!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00107332480431341!GO:0006626;protein targeting to mitochondrion;0.00108645753409161!GO:0051301;cell division;0.00110851186727039!GO:0015980;energy derivation by oxidation of organic compounds;0.00112393531503185!GO:0007006;mitochondrial membrane organization and biogenesis;0.00120353361610898!GO:0046489;phosphoinositide biosynthetic process;0.00124772291156299!GO:0051325;interphase;0.00130244351613065!GO:0030125;clathrin vesicle coat;0.0013101965683637!GO:0030665;clathrin coated vesicle membrane;0.0013101965683637!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00134700791364037!GO:0031982;vesicle;0.00136718608488916!GO:0043566;structure-specific DNA binding;0.0013797280632977!GO:0009165;nucleotide biosynthetic process;0.0013938136421601!GO:0030031;cell projection biogenesis;0.0014462024888469!GO:0051920;peroxiredoxin activity;0.00148001597088125!GO:0031410;cytoplasmic vesicle;0.00150888825596143!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00155884185942768!GO:0005791;rough endoplasmic reticulum;0.0015762989057149!GO:0043488;regulation of mRNA stability;0.00159450748081995!GO:0043487;regulation of RNA stability;0.00159450748081995!GO:0045893;positive regulation of transcription, DNA-dependent;0.0016719095766923!GO:0030036;actin cytoskeleton organization and biogenesis;0.00167301907727962!GO:0048471;perinuclear region of cytoplasm;0.00176372341847585!GO:0051789;response to protein stimulus;0.00176372341847585!GO:0006986;response to unfolded protein;0.00176372341847585!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00176372341847585!GO:0030133;transport vesicle;0.00177364516806117!GO:0030658;transport vesicle membrane;0.00184254760407956!GO:0048037;cofactor binding;0.00184586984044017!GO:0004386;helicase activity;0.00186087672385782!GO:0015630;microtubule cytoskeleton;0.00195093930622374!GO:0005048;signal sequence binding;0.00197960349823641!GO:0005885;Arp2/3 protein complex;0.00197960349823641!GO:0006066;alcohol metabolic process;0.00199357157691645!GO:0046467;membrane lipid biosynthetic process;0.00199832054548511!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00204085736217378!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0020827964074456!GO:0018196;peptidyl-asparagine modification;0.00213941918005555!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00213941918005555!GO:0032561;guanyl ribonucleotide binding;0.00215933817518326!GO:0019001;guanyl nucleotide binding;0.00215933817518326!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00215933817518326!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00215933817518326!GO:0050657;nucleic acid transport;0.00223412673010285!GO:0051236;establishment of RNA localization;0.00223412673010285!GO:0050658;RNA transport;0.00223412673010285!GO:0016125;sterol metabolic process;0.00229190200435197!GO:0006403;RNA localization;0.00237941008675832!GO:0008026;ATP-dependent helicase activity;0.00238889917659403!GO:0006613;cotranslational protein targeting to membrane;0.00250266898300723!GO:0015992;proton transport;0.00263202260421017!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00270794027337257!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00270794027337257!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00270794027337257!GO:0046483;heterocycle metabolic process;0.00274216789786476!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00289788647866401!GO:0006118;electron transport;0.0028983901255135!GO:0006520;amino acid metabolic process;0.00297756618117609!GO:0006818;hydrogen transport;0.00301410141641867!GO:0007243;protein kinase cascade;0.00309732239205141!GO:0043021;ribonucleoprotein binding;0.00335546616864361!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0034907348980677!GO:0008632;apoptotic program;0.00350036282081243!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00357074002156373!GO:0045941;positive regulation of transcription;0.00370767966363045!GO:0022890;inorganic cation transmembrane transporter activity;0.00371771424005559!GO:0008652;amino acid biosynthetic process;0.00384134778718015!GO:0030660;Golgi-associated vesicle membrane;0.00399914053752028!GO:0004576;oligosaccharyl transferase activity;0.00410643588519367!GO:0008361;regulation of cell size;0.00433255096583596!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00434120385151823!GO:0015399;primary active transmembrane transporter activity;0.00434120385151823!GO:0006650;glycerophospholipid metabolic process;0.00458536299814803!GO:0045892;negative regulation of transcription, DNA-dependent;0.00459374115065376!GO:0016049;cell growth;0.00463033688818843!GO:0008243;plasminogen activator activity;0.00463033688818843!GO:0050790;regulation of catalytic activity;0.00467261872337954!GO:0000151;ubiquitin ligase complex;0.00479951211139614!GO:0006917;induction of apoptosis;0.00514995092404616!GO:0006402;mRNA catabolic process;0.00522032776408088!GO:0006629;lipid metabolic process;0.0052803065941883!GO:0006414;translational elongation;0.00537635139287256!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0055365439460552!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00570372530049672!GO:0015002;heme-copper terminal oxidase activity;0.00570372530049672!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00570372530049672!GO:0004129;cytochrome-c oxidase activity;0.00570372530049672!GO:0008033;tRNA processing;0.00600382209761353!GO:0051252;regulation of RNA metabolic process;0.00612342754920563!GO:0051098;regulation of binding;0.00626651732540715!GO:0008629;induction of apoptosis by intracellular signals;0.00627044640700467!GO:0006740;NADPH regeneration;0.00636589278593364!GO:0006098;pentose-phosphate shunt;0.00636589278593364!GO:0008637;apoptotic mitochondrial changes;0.0064910184055981!GO:0017166;vinculin binding;0.00683082718515042!GO:0012502;induction of programmed cell death;0.00687207250314486!GO:0007010;cytoskeleton organization and biogenesis;0.00689910418581053!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00689969388830789!GO:0030384;phosphoinositide metabolic process;0.00707116837666361!GO:0006506;GPI anchor biosynthetic process;0.0070781864538054!GO:0030029;actin filament-based process;0.007294780346998!GO:0051287;NAD binding;0.00730658065578768!GO:0001558;regulation of cell growth;0.00769239373940229!GO:0006730;one-carbon compound metabolic process;0.00785446350865086!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00818524866996614!GO:0005813;centrosome;0.00844580188882713!GO:0008092;cytoskeletal protein binding;0.00844580188882713!GO:0006505;GPI anchor metabolic process;0.00851375561670966!GO:0045926;negative regulation of growth;0.00851375561670966!GO:0006595;polyamine metabolic process;0.00851762755446906!GO:0005684;U2-dependent spliceosome;0.00857400483941952!GO:0006612;protein targeting to membrane;0.00860594194627526!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00872469643921307!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00872469643921307!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00888808682629598!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00919460921342403!GO:0051168;nuclear export;0.00932401953390335!GO:0001726;ruffle;0.00932401953390335!GO:0016272;prefoldin complex;0.00945172992489682!GO:0030880;RNA polymerase complex;0.00952045796502723!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00969845581227168!GO:0006749;glutathione metabolic process;0.0103600407721353!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0104039346147708!GO:0051101;regulation of DNA binding;0.0108464790119484!GO:0009116;nucleoside metabolic process;0.010907833957952!GO:0043154;negative regulation of caspase activity;0.0110151818155974!GO:0005774;vacuolar membrane;0.011071557549383!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0116195106197292!GO:0048487;beta-tubulin binding;0.0117066076592812!GO:0006779;porphyrin biosynthetic process;0.011909794605176!GO:0033014;tetrapyrrole biosynthetic process;0.011909794605176!GO:0006401;RNA catabolic process;0.0121887743723729!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0123683107842911!GO:0045792;negative regulation of cell size;0.0124599156186603!GO:0031301;integral to organelle membrane;0.0125478275293481!GO:0055092;sterol homeostasis;0.0126083181394325!GO:0042632;cholesterol homeostasis;0.0126083181394325!GO:0030308;negative regulation of cell growth;0.0126348127461461!GO:0031902;late endosome membrane;0.0128023555459592!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0128151953899287!GO:0006007;glucose catabolic process;0.0131929761564442!GO:0006767;water-soluble vitamin metabolic process;0.0132200275735275!GO:0001836;release of cytochrome c from mitochondria;0.0135530904293895!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0142368508052369!GO:0006643;membrane lipid metabolic process;0.0146027100155523!GO:0030145;manganese ion binding;0.0147171720829574!GO:0000096;sulfur amino acid metabolic process;0.0148680153476607!GO:0031072;heat shock protein binding;0.0149636659744155!GO:0006354;RNA elongation;0.0150958251137741!GO:0035035;histone acetyltransferase binding;0.0159336025539195!GO:0006509;membrane protein ectodomain proteolysis;0.0159939801109079!GO:0033619;membrane protein proteolysis;0.0159939801109079!GO:0051028;mRNA transport;0.0162034818204523!GO:0043284;biopolymer biosynthetic process;0.0162496607183697!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0166203900078891!GO:0006644;phospholipid metabolic process;0.0168630382579551!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0170824088954765!GO:0003724;RNA helicase activity;0.0171400487132103!GO:0006783;heme biosynthetic process;0.017179064366423!GO:0000049;tRNA binding;0.017179064366423!GO:0045334;clathrin-coated endocytic vesicle;0.017223196087212!GO:0006289;nucleotide-excision repair;0.0175403742709603!GO:0006778;porphyrin metabolic process;0.0179449366442544!GO:0033013;tetrapyrrole metabolic process;0.0179449366442544!GO:0031529;ruffle organization and biogenesis;0.0180158401497146!GO:0003711;transcription elongation regulator activity;0.0184086655618987!GO:0016197;endosome transport;0.0184621474972288!GO:0006891;intra-Golgi vesicle-mediated transport;0.0185417033238667!GO:0030128;clathrin coat of endocytic vesicle;0.0188914815077831!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0188914815077831!GO:0030122;AP-2 adaptor complex;0.0188914815077831!GO:0043492;ATPase activity, coupled to movement of substances;0.0189097198976168!GO:0003729;mRNA binding;0.0194032698978027!GO:0006739;NADP metabolic process;0.019596956794975!GO:0009112;nucleobase metabolic process;0.0196790297253274!GO:0005815;microtubule organizing center;0.0196790297253274!GO:0006733;oxidoreduction coenzyme metabolic process;0.0197447409326051!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0197934406362464!GO:0000428;DNA-directed RNA polymerase complex;0.0197934406362464!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0200916631507013!GO:0030027;lamellipodium;0.0202058778252479!GO:0007050;cell cycle arrest;0.0203630979292705!GO:0046822;regulation of nucleocytoplasmic transport;0.0205349683030738!GO:0008213;protein amino acid alkylation;0.0212793816794471!GO:0006479;protein amino acid methylation;0.0212793816794471!GO:0015631;tubulin binding;0.0213349577427743!GO:0050789;regulation of biological process;0.0213507117629735!GO:0005862;muscle thin filament tropomyosin;0.0214037375814384!GO:0007088;regulation of mitosis;0.0214230412321617!GO:0016363;nuclear matrix;0.0214230412321617!GO:0019318;hexose metabolic process;0.0214230412321617!GO:0006633;fatty acid biosynthetic process;0.0219555529692784!GO:0005996;monosaccharide metabolic process;0.0220327431727947!GO:0030833;regulation of actin filament polymerization;0.0225406788232167!GO:0016791;phosphoric monoester hydrolase activity;0.0225406788232167!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0228419919498771!GO:0005149;interleukin-1 receptor binding;0.0233069209069326!GO:0044437;vacuolar part;0.0233252936914667!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.023353190585526!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0233952282551725!GO:0051087;chaperone binding;0.0235455472542178!GO:0040008;regulation of growth;0.0235455472542178!GO:0006458;'de novo' protein folding;0.0238693567598322!GO:0051084;'de novo' posttranslational protein folding;0.0238693567598322!GO:0008139;nuclear localization sequence binding;0.0238693567598322!GO:0046983;protein dimerization activity;0.0243592830027394!GO:0008203;cholesterol metabolic process;0.0247595836192402!GO:0006950;response to stress;0.0250513993806455!GO:0048144;fibroblast proliferation;0.0250513993806455!GO:0048145;regulation of fibroblast proliferation;0.0250513993806455!GO:0030433;ER-associated protein catabolic process;0.0250513993806455!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0250513993806455!GO:0004680;casein kinase activity;0.0252015454458358!GO:0006519;amino acid and derivative metabolic process;0.0252981457233831!GO:0009119;ribonucleoside metabolic process;0.0256486072128282!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0260551987952391!GO:0010257;NADH dehydrogenase complex assembly;0.0260551987952391!GO:0033108;mitochondrial respiratory chain complex assembly;0.0260551987952391!GO:0006497;protein amino acid lipidation;0.0261141453155002!GO:0030503;regulation of cell redox homeostasis;0.0261799614412161!GO:0035258;steroid hormone receptor binding;0.0262292345591563!GO:0003684;damaged DNA binding;0.0271467866853978!GO:0000082;G1/S transition of mitotic cell cycle;0.0272246588138958!GO:0042168;heme metabolic process;0.0273626105718716!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0275659177881288!GO:0051540;metal cluster binding;0.028300321188119!GO:0051536;iron-sulfur cluster binding;0.028300321188119!GO:0030032;lamellipodium biogenesis;0.0283192752252421!GO:0005819;spindle;0.0284775470484072!GO:0005765;lysosomal membrane;0.028926428260442!GO:0008538;proteasome activator activity;0.0290846300652732!GO:0042158;lipoprotein biosynthetic process;0.0291687785021339!GO:0005856;cytoskeleton;0.0292924313764188!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0292924313764188!GO:0030659;cytoplasmic vesicle membrane;0.0292924313764188!GO:0045936;negative regulation of phosphate metabolic process;0.0294721922547208!GO:0044452;nucleolar part;0.0305804272605948!GO:0009303;rRNA transcription;0.0307540173567437!GO:0005869;dynactin complex;0.0307540173567437!GO:0006383;transcription from RNA polymerase III promoter;0.0308044402976859!GO:0007265;Ras protein signal transduction;0.0313242944103318!GO:0008283;cell proliferation;0.0313242944103318!GO:0032507;maintenance of cellular protein localization;0.0314236819345287!GO:0006611;protein export from nucleus;0.031960469764257!GO:0009166;nucleotide catabolic process;0.0321934953045336!GO:0030663;COPI coated vesicle membrane;0.0323883248983918!GO:0030126;COPI vesicle coat;0.0323883248983918!GO:0030041;actin filament polymerization;0.0329002868955075!GO:0043414;biopolymer methylation;0.0332145305443097!GO:0003756;protein disulfide isomerase activity;0.0337311108983659!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0337311108983659!GO:0016835;carbon-oxygen lyase activity;0.0337343064996208!GO:0051338;regulation of transferase activity;0.0339428503075303!GO:0040029;regulation of gene expression, epigenetic;0.0343573377075031!GO:0033559;unsaturated fatty acid metabolic process;0.0349526139922317!GO:0006636;unsaturated fatty acid biosynthetic process;0.0349526139922317!GO:0000209;protein polyubiquitination;0.0349608661621306!GO:0048146;positive regulation of fibroblast proliferation;0.0359240089901092!GO:0004674;protein serine/threonine kinase activity;0.0364609600264454!GO:0055088;lipid homeostasis;0.0371627936342589!GO:0008426;protein kinase C inhibitor activity;0.0372320580099439!GO:0008186;RNA-dependent ATPase activity;0.0376411510124992!GO:0030134;ER to Golgi transport vesicle;0.037731377661364!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0378408558867382!GO:0030508;thiol-disulfide exchange intermediate activity;0.038126669134717!GO:0006897;endocytosis;0.0381716224507477!GO:0010324;membrane invagination;0.0381716224507477!GO:0016741;transferase activity, transferring one-carbon groups;0.0383476896625398!GO:0008168;methyltransferase activity;0.0383476896625398!GO:0030137;COPI-coated vesicle;0.0396008269947941!GO:0006807;nitrogen compound metabolic process;0.0398396712483541!GO:0033673;negative regulation of kinase activity;0.0398396712483541!GO:0006469;negative regulation of protein kinase activity;0.0398396712483541!GO:0007040;lysosome organization and biogenesis;0.0398617082907199!GO:0006984;ER-nuclear signaling pathway;0.0400220249081371!GO:0006338;chromatin remodeling;0.0406320013305864!GO:0031272;regulation of pseudopodium formation;0.0406320013305864!GO:0031269;pseudopodium formation;0.0406320013305864!GO:0031344;regulation of cell projection organization and biogenesis;0.0406320013305864!GO:0031268;pseudopodium organization and biogenesis;0.0406320013305864!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0406320013305864!GO:0031274;positive regulation of pseudopodium formation;0.0406320013305864!GO:0006417;regulation of translation;0.0411015148361027!GO:0051059;NF-kappaB binding;0.041198483008349!GO:0046394;carboxylic acid biosynthetic process;0.0412892637458249!GO:0016053;organic acid biosynthetic process;0.0412892637458249!GO:0005758;mitochondrial intermembrane space;0.0416401444045245!GO:0044433;cytoplasmic vesicle part;0.0418898209132882!GO:0045806;negative regulation of endocytosis;0.0419925615075498!GO:0051128;regulation of cellular component organization and biogenesis;0.0424444118279297!GO:0051348;negative regulation of transferase activity;0.043414766589078!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0438050695895207!GO:0051085;chaperone cofactor-dependent protein folding;0.0448303472914905!GO:0030521;androgen receptor signaling pathway;0.046056480967436!GO:0004860;protein kinase inhibitor activity;0.0465151599482386!GO:0005637;nuclear inner membrane;0.0466269478647463!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0466269478647463!GO:0012510;trans-Golgi network transport vesicle membrane;0.0466269478647463!GO:0050178;phenylpyruvate tautomerase activity;0.0470262438348337!GO:0000118;histone deacetylase complex;0.0477454014727401!GO:0004177;aminopeptidase activity;0.0483596082238183!GO:0004681;casein kinase I activity;0.0489640900084983!GO:0030140;trans-Golgi network transport vesicle;0.0493757448737047!GO:0016783;sulfurtransferase activity;0.0497690428553386 | |||
|sample_id=11507 | |sample_id=11507 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=esophagus | |sample_tissue=esophagus | ||
|top_motifs=TP53:2.64185996292;TBX4,5:2.02474445227;SNAI1..3:1.96551805252;ZEB1:1.95281314181;VSX1,2:1.69766302396;ZNF423:1.69635219059;XCPE1{core}:1.63554626005;ZNF148:1.55107219694;HAND1,2:1.46191110765;MYOD1:1.43633567996;LMO2:1.27533355006;GTF2A1,2:1.25489703585;NR5A1,2:1.2405632945;TBP:1.20430149049;NKX2-3_NKX2-5:1.16155336249;TFCP2:1.15521939432;EBF1:1.15189046527;ONECUT1,2:1.01937280583;ADNP_IRX_SIX_ZHX:0.993469855703;PPARG:0.934609108183;NANOG:0.92158871748;TEAD1:0.87652342471;SP1:0.855319528402;ZIC1..3:0.818633794822;POU1F1:0.7804401713;GLI1..3:0.713183567727;HIF1A:0.7073367437;CEBPA,B_DDIT3:0.698011718916;POU2F1..3:0.676563916193;ZNF238:0.621735128742;CRX:0.619907842628;IKZF1:0.616571769811;TEF:0.609717107752;STAT5{A,B}:0.587696206142;TFAP2{A,C}:0.585865680947;FOS_FOS{B,L1}_JUN{B,D}:0.55504703362;PAX1,9:0.538432678535;MTF1:0.524257080073;RREB1:0.505882114119;FOXM1:0.469927447597;bHLH_family:0.459804604629;EP300:0.451439397796;GZF1:0.439365617266;HOX{A5,B5}:0.407501419623;BACH2:0.389354928542;FOSL2:0.381676360169;LHX3,4:0.370658579008;HES1:0.368898976322;GFI1B:0.314795209355;SMAD1..7,9:0.298555093199;TLX1..3_NFIC{dimer}:0.297073429914;NR1H4:0.290218651802;PBX1:0.286538469834;TFAP4:0.285167367006;GCM1,2:0.267449591039;ZBTB6:0.264032598088;AR:0.255288843898;HLF:0.244152723319;FOXQ1:0.238694836949;NR6A1:0.205888065067;NKX2-2,8:0.176299863367;POU6F1:0.158921784059;HNF4A_NR2F1,2:0.135531210973;FOXL1:0.119361676737;PDX1:0.0998895742156;HMX1:0.0953085870938;RXR{A,B,G}:0.0806535157076;NFIL3:0.0773730661019;NKX3-2:0.056784180408;CDC5L:0.0562248999909;RXRA_VDR{dimer}:0.0476881503773;HOX{A4,D4}:0.0139218622426;HIC1:0.0129030780407;SOX17:0.00716447467937;SOX{8,9,10}:0.00442593228149;PAX5:-0.0112959857667;HNF1A:-0.0135250515419;ESR1:-0.0435721320176;NFE2:-0.0560830176708;MAZ:-0.0776412746992;OCT4_SOX2{dimer}:-0.0844717255265;ARID5B:-0.0845151047061;REST:-0.0880907042621;PITX1..3:-0.0916368474327;T:-0.0936261176505;LEF1_TCF7_TCF7L1,2:-0.102285733795;NR3C1:-0.115142831067;TOPORS:-0.116363174795;GTF2I:-0.158125792413;SOX2:-0.166681393514;FOX{F1,F2,J1}:-0.169813125432;NFKB1_REL_RELA:-0.170749280242;POU5F1:-0.177507293502;POU3F1..4:-0.189858004759;KLF4:-0.194579731451;NFIX:-0.20534754018;UFEwm:-0.209762701863;MED-1{core}:-0.225406895809;NFE2L2:-0.226360839279;FOX{I1,J2}:-0.228977718892;NFY{A,B,C}:-0.251731884565;STAT2,4,6:-0.252153748377;GATA6:-0.257942934981;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.268641344756;RBPJ:-0.275677388158;NKX2-1,4:-0.292205324028;PAX4:-0.29883755974;HOX{A6,A7,B6,B7}:-0.32002835754;TFAP2B:-0.328464200264;MEF2{A,B,C,D}:-0.356498853944;ETS1,2:-0.362825991164;SRF:-0.371779387033;ZNF384:-0.380716649019;SOX5:-0.39435748924;ZNF143:-0.414338827632;TFDP1:-0.414613127783;ESRRA:-0.42863515134;TAL1_TCF{3,4,12}:-0.433048414751;SPIB:-0.439246563913;GFI1:-0.444024878643;NHLH1,2:-0.457299412383;JUN:-0.459873934126;PAX8:-0.508591430401;SPZ1:-0.510596062211;RUNX1..3:-0.51591207319;E2F1..5:-0.519041885426;MYBL2:-0.55807021973;RFX1:-0.560509768701;ALX4:-0.565880244722;CUX2:-0.580601034856;RORA:-0.582010155179;DBP:-0.584156699816;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.592456972263;MYB:-0.60138153147;PAX2:-0.64271014437;FOXA2:-0.655517705506;IRF7:-0.66204383135;ATF2:-0.675624579532;EGR1..3:-0.676832225637;PATZ1:-0.689538803615;HSF1,2:-0.711022630536;SPI1:-0.732050767815;FOXO1,3,4:-0.760140950756;RFX2..5_RFXANK_RFXAP:-0.761400004872;MYFfamily:-0.762806986613;PAX6:-0.772163926072;NFE2L1:-0.804480449222;NKX6-1,2:-0.810645710365;MTE{core}:-0.814261541059;TGIF1:-0.838680354057;PAX3,7:-0.854526285498;NRF1:-0.857351083735;BREu{core}:-0.863508013182;PRRX1,2:-0.887949197269;YY1:-0.901524000812;FOX{D1,D2}:-0.925884252253;MZF1:-0.940573318376;MAFB:-0.960474968395;ATF5_CREB3:-0.96340837028;ELF1,2,4:-0.964032935691;HOXA9_MEIS1:-0.974388936861;FOXN1:-0.992893852304;TLX2:-0.999923007122;PRDM1:-1.01363485389;FOXP3:-1.01527370063;ELK1,4_GABP{A,B1}:-1.03203139099;GATA4:-1.03697996197;ZFP161:-1.04210371006;EVI1:-1.05934779065;FOXP1:-1.10637964108;HBP1_HMGB_SSRP1_UBTF:-1.11659398276;NFATC1..3:-1.12610079516;BPTF:-1.1578268395;ATF4:-1.1667953031;IRF1,2:-1.19486707203;ATF6:-1.25199375356;ALX1:-1.26240441216;CDX1,2,4:-1.28435385539;IKZF2:-1.30034583702;AHR_ARNT_ARNT2:-1.30741626782;CREB1:-1.31149473189;ZBTB16:-1.3237705212;NANOG{mouse}:-1.35730523254;AIRE:-1.37447118313;DMAP1_NCOR{1,2}_SMARC:-1.40719031532;STAT1,3:-1.43764739937;HMGA1,2:-1.47384753256;NKX3-1:-1.48545031628;XBP1:-1.54885998989;EN1,2:-1.65743984206;FOXD3:-1.83387015515;SREBF1,2:-1.91750308516 | |top_motifs=TP53:2.64185996292;TBX4,5:2.02474445227;SNAI1..3:1.96551805252;ZEB1:1.95281314181;VSX1,2:1.69766302396;ZNF423:1.69635219059;XCPE1{core}:1.63554626005;ZNF148:1.55107219694;HAND1,2:1.46191110765;MYOD1:1.43633567996;LMO2:1.27533355006;GTF2A1,2:1.25489703585;NR5A1,2:1.2405632945;TBP:1.20430149049;NKX2-3_NKX2-5:1.16155336249;TFCP2:1.15521939432;EBF1:1.15189046527;ONECUT1,2:1.01937280583;ADNP_IRX_SIX_ZHX:0.993469855703;PPARG:0.934609108183;NANOG:0.92158871748;TEAD1:0.87652342471;SP1:0.855319528402;ZIC1..3:0.818633794822;POU1F1:0.7804401713;GLI1..3:0.713183567727;HIF1A:0.7073367437;CEBPA,B_DDIT3:0.698011718916;POU2F1..3:0.676563916193;ZNF238:0.621735128742;CRX:0.619907842628;IKZF1:0.616571769811;TEF:0.609717107752;STAT5{A,B}:0.587696206142;TFAP2{A,C}:0.585865680947;FOS_FOS{B,L1}_JUN{B,D}:0.55504703362;PAX1,9:0.538432678535;MTF1:0.524257080073;RREB1:0.505882114119;FOXM1:0.469927447597;bHLH_family:0.459804604629;EP300:0.451439397796;GZF1:0.439365617266;HOX{A5,B5}:0.407501419623;BACH2:0.389354928542;FOSL2:0.381676360169;LHX3,4:0.370658579008;HES1:0.368898976322;GFI1B:0.314795209355;SMAD1..7,9:0.298555093199;TLX1..3_NFIC{dimer}:0.297073429914;NR1H4:0.290218651802;PBX1:0.286538469834;TFAP4:0.285167367006;GCM1,2:0.267449591039;ZBTB6:0.264032598088;AR:0.255288843898;HLF:0.244152723319;FOXQ1:0.238694836949;NR6A1:0.205888065067;NKX2-2,8:0.176299863367;POU6F1:0.158921784059;HNF4A_NR2F1,2:0.135531210973;FOXL1:0.119361676737;PDX1:0.0998895742156;HMX1:0.0953085870938;RXR{A,B,G}:0.0806535157076;NFIL3:0.0773730661019;NKX3-2:0.056784180408;CDC5L:0.0562248999909;RXRA_VDR{dimer}:0.0476881503773;HOX{A4,D4}:0.0139218622426;HIC1:0.0129030780407;SOX17:0.00716447467937;SOX{8,9,10}:0.00442593228149;PAX5:-0.0112959857667;HNF1A:-0.0135250515419;ESR1:-0.0435721320176;NFE2:-0.0560830176708;MAZ:-0.0776412746992;OCT4_SOX2{dimer}:-0.0844717255265;ARID5B:-0.0845151047061;REST:-0.0880907042621;PITX1..3:-0.0916368474327;T:-0.0936261176505;LEF1_TCF7_TCF7L1,2:-0.102285733795;NR3C1:-0.115142831067;TOPORS:-0.116363174795;GTF2I:-0.158125792413;SOX2:-0.166681393514;FOX{F1,F2,J1}:-0.169813125432;NFKB1_REL_RELA:-0.170749280242;POU5F1:-0.177507293502;POU3F1..4:-0.189858004759;KLF4:-0.194579731451;NFIX:-0.20534754018;UFEwm:-0.209762701863;MED-1{core}:-0.225406895809;NFE2L2:-0.226360839279;FOX{I1,J2}:-0.228977718892;NFY{A,B,C}:-0.251731884565;STAT2,4,6:-0.252153748377;GATA6:-0.257942934981;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.268641344756;RBPJ:-0.275677388158;NKX2-1,4:-0.292205324028;PAX4:-0.29883755974;HOX{A6,A7,B6,B7}:-0.32002835754;TFAP2B:-0.328464200264;MEF2{A,B,C,D}:-0.356498853944;ETS1,2:-0.362825991164;SRF:-0.371779387033;ZNF384:-0.380716649019;SOX5:-0.39435748924;ZNF143:-0.414338827632;TFDP1:-0.414613127783;ESRRA:-0.42863515134;TAL1_TCF{3,4,12}:-0.433048414751;SPIB:-0.439246563913;GFI1:-0.444024878643;NHLH1,2:-0.457299412383;JUN:-0.459873934126;PAX8:-0.508591430401;SPZ1:-0.510596062211;RUNX1..3:-0.51591207319;E2F1..5:-0.519041885426;MYBL2:-0.55807021973;RFX1:-0.560509768701;ALX4:-0.565880244722;CUX2:-0.580601034856;RORA:-0.582010155179;DBP:-0.584156699816;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.592456972263;MYB:-0.60138153147;PAX2:-0.64271014437;FOXA2:-0.655517705506;IRF7:-0.66204383135;ATF2:-0.675624579532;EGR1..3:-0.676832225637;PATZ1:-0.689538803615;HSF1,2:-0.711022630536;SPI1:-0.732050767815;FOXO1,3,4:-0.760140950756;RFX2..5_RFXANK_RFXAP:-0.761400004872;MYFfamily:-0.762806986613;PAX6:-0.772163926072;NFE2L1:-0.804480449222;NKX6-1,2:-0.810645710365;MTE{core}:-0.814261541059;TGIF1:-0.838680354057;PAX3,7:-0.854526285498;NRF1:-0.857351083735;BREu{core}:-0.863508013182;PRRX1,2:-0.887949197269;YY1:-0.901524000812;FOX{D1,D2}:-0.925884252253;MZF1:-0.940573318376;MAFB:-0.960474968395;ATF5_CREB3:-0.96340837028;ELF1,2,4:-0.964032935691;HOXA9_MEIS1:-0.974388936861;FOXN1:-0.992893852304;TLX2:-0.999923007122;PRDM1:-1.01363485389;FOXP3:-1.01527370063;ELK1,4_GABP{A,B1}:-1.03203139099;GATA4:-1.03697996197;ZFP161:-1.04210371006;EVI1:-1.05934779065;FOXP1:-1.10637964108;HBP1_HMGB_SSRP1_UBTF:-1.11659398276;NFATC1..3:-1.12610079516;BPTF:-1.1578268395;ATF4:-1.1667953031;IRF1,2:-1.19486707203;ATF6:-1.25199375356;ALX1:-1.26240441216;CDX1,2,4:-1.28435385539;IKZF2:-1.30034583702;AHR_ARNT_ARNT2:-1.30741626782;CREB1:-1.31149473189;ZBTB16:-1.3237705212;NANOG{mouse}:-1.35730523254;AIRE:-1.37447118313;DMAP1_NCOR{1,2}_SMARC:-1.40719031532;STAT1,3:-1.43764739937;HMGA1,2:-1.47384753256;NKX3-1:-1.48545031628;XBP1:-1.54885998989;EN1,2:-1.65743984206;FOXD3:-1.83387015515;SREBF1,2:-1.91750308516 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11507-119G4;search_select_hide=table117:FF:11507-119G4 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Esophageal Epithelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11323 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11323
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11323
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.515 |
| 10 | 10 | 0.581 |
| 100 | 100 | 0.677 |
| 101 | 101 | 0.497 |
| 102 | 102 | 0.578 |
| 103 | 103 | 0.186 |
| 104 | 104 | 0.537 |
| 105 | 105 | 0.074 |
| 106 | 106 | 0.0487 |
| 107 | 107 | 0.0171 |
| 108 | 108 | 0.47 |
| 109 | 109 | 0.0223 |
| 11 | 11 | 0.122 |
| 110 | 110 | 0.204 |
| 111 | 111 | 0.205 |
| 112 | 112 | 0.325 |
| 113 | 113 | 0.913 |
| 114 | 114 | 0.31 |
| 115 | 115 | 0.37 |
| 116 | 116 | 0.579 |
| 117 | 117 | 0.754 |
| 118 | 118 | 0.724 |
| 119 | 119 | 0.117 |
| 12 | 12 | 0.435 |
| 120 | 120 | 0.429 |
| 121 | 121 | 0.545 |
| 122 | 122 | 0.101 |
| 123 | 123 | 0.873 |
| 124 | 124 | 0.917 |
| 125 | 125 | 0.472 |
| 126 | 126 | 0.586 |
| 127 | 127 | 0.123 |
| 128 | 128 | 0.112 |
| 129 | 129 | 0.05 |
| 13 | 13 | 0.162 |
| 130 | 130 | 0.882 |
| 131 | 131 | 0.293 |
| 132 | 132 | 0.124 |
| 133 | 133 | 4.78259e-4 |
| 134 | 134 | 0.933 |
| 135 | 135 | 0.425 |
| 136 | 136 | 0.743 |
| 137 | 137 | 0.358 |
| 138 | 138 | 0.89 |
| 139 | 139 | 0.655 |
| 14 | 14 | 0.592 |
| 140 | 140 | 0.88 |
| 141 | 141 | 0.968 |
| 142 | 142 | 0.0603 |
| 143 | 143 | 0.457 |
| 144 | 144 | 0.554 |
| 145 | 145 | 0.113 |
| 146 | 146 | 0.0402 |
| 147 | 147 | 0.22 |
| 148 | 148 | 0.983 |
| 149 | 149 | 0.233 |
| 15 | 15 | 0.579 |
| 150 | 150 | 0.341 |
| 151 | 151 | 0.292 |
| 152 | 152 | 0.0964 |
| 153 | 153 | 0.982 |
| 154 | 154 | 0.609 |
| 155 | 155 | 0.362 |
| 156 | 156 | 0.11 |
| 157 | 157 | 0.351 |
| 158 | 158 | 0.543 |
| 159 | 159 | 0.936 |
| 16 | 16 | 0.218 |
| 160 | 160 | 0.0273 |
| 161 | 161 | 0.301 |
| 162 | 162 | 0.399 |
| 163 | 163 | 0.754 |
| 164 | 164 | 0.877 |
| 165 | 165 | 0.559 |
| 166 | 166 | 0.736 |
| 167 | 167 | 0.302 |
| 168 | 168 | 0.545 |
| 169 | 169 | 0.0515 |
| 17 | 17 | 0.132 |
| 18 | 18 | 0.197 |
| 19 | 19 | 0.334 |
| 2 | 2 | 0.156 |
| 20 | 20 | 0.73 |
| 21 | 21 | 0.948 |
| 22 | 22 | 0.151 |
| 23 | 23 | 0.166 |
| 24 | 24 | 0.0797 |
| 25 | 25 | 0.945 |
| 26 | 26 | 0.216 |
| 27 | 27 | 0.269 |
| 28 | 28 | 0.912 |
| 29 | 29 | 0.744 |
| 3 | 3 | 0.428 |
| 30 | 30 | 0.139 |
| 31 | 31 | 0.579 |
| 32 | 32 | 0.317 |
| 33 | 33 | 0.286 |
| 34 | 34 | 0.545 |
| 35 | 35 | 0.514 |
| 36 | 36 | 0.9 |
| 37 | 37 | 0.421 |
| 38 | 38 | 0.302 |
| 39 | 39 | 0.203 |
| 4 | 4 | 0.162 |
| 40 | 40 | 0.0105 |
| 41 | 41 | 0.901 |
| 42 | 42 | 0.499 |
| 43 | 43 | 0.355 |
| 44 | 44 | 0.666 |
| 45 | 45 | 0.151 |
| 46 | 46 | 0.264 |
| 47 | 47 | 0.347 |
| 48 | 48 | 0.196 |
| 49 | 49 | 0.366 |
| 5 | 5 | 0.637 |
| 50 | 50 | 0.429 |
| 51 | 51 | 0.453 |
| 52 | 52 | 0.293 |
| 53 | 53 | 0.981 |
| 54 | 54 | 0.47 |
| 55 | 55 | 0.364 |
| 56 | 56 | 0.3 |
| 57 | 57 | 0.178 |
| 58 | 58 | 0.558 |
| 59 | 59 | 0.048 |
| 6 | 6 | 0.368 |
| 60 | 60 | 0.139 |
| 61 | 61 | 0.711 |
| 62 | 62 | 0.575 |
| 63 | 63 | 0.144 |
| 64 | 64 | 0.204 |
| 65 | 65 | 0.0843 |
| 66 | 66 | 0.532 |
| 67 | 67 | 0.836 |
| 68 | 68 | 0.652 |
| 69 | 69 | 0.0738 |
| 7 | 7 | 0.4 |
| 70 | 70 | 0.0045 |
| 71 | 71 | 0.256 |
| 72 | 72 | 0.754 |
| 73 | 73 | 0.0929 |
| 74 | 74 | 0.0468 |
| 75 | 75 | 0.54 |
| 76 | 76 | 0.53 |
| 77 | 77 | 0.0191 |
| 78 | 78 | 0.108 |
| 79 | 79 | 0.645 |
| 8 | 8 | 0.117 |
| 80 | 80 | 0.963 |
| 81 | 81 | 0.804 |
| 82 | 82 | 0.449 |
| 83 | 83 | 0.926 |
| 84 | 84 | 0.523 |
| 85 | 85 | 0.11 |
| 86 | 86 | 0.751 |
| 87 | 87 | 0.359 |
| 88 | 88 | 0.238 |
| 89 | 89 | 0.0362 |
| 9 | 9 | 0.622 |
| 90 | 90 | 0.148 |
| 91 | 91 | 0.166 |
| 92 | 92 | 0.443 |
| 93 | 93 | 0.917 |
| 94 | 94 | 0.451 |
| 95 | 95 | 0.333 |
| 96 | 96 | 0.787 |
| 97 | 97 | 0.928 |
| 98 | 98 | 0.302 |
| 99 | 99 | 0.0136 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11323
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000056 human epithelial cell of esophagus sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002252 (epithelial cell of esophagus)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001043 (esophagus)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001041 (foregut)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000056 (human epithelial cell of esophagus sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
