FF:11697-123A5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005083 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005083 | ||
|accession_numbers=CAGE;DRX008353;DRR009225;DRZ000650;DRZ002035;DRZ012000;DRZ013385 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037160;DRR041526;DRZ007168 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000097 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11697-123A5 | |id=FF:11697-123A5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000097 | ||
|is_obsolete= | |||
|library_id=CNhs12126 | |||
|library_id_phase_based=2:CNhs12126 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11697 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTTTCG.11697 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11697 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTTTCG.11697 | |||
|name=Mesenchymal Stem Cells - bone marrow, donor3 | |name=Mesenchymal Stem Cells - bone marrow, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12126,LSID839,release011,COMPLETED | |profile_hcage=CNhs12126,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number=SC7505 | |rna_catalog_number=SC7505 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=123A5 | |rna_tube_id=123A5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.GTTTCG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:3654 | |sample_cell_catalog=lot:3654 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.70336754481779e-236!GO:0043226;organelle;2.95420438048858e-199!GO:0043229;intracellular organelle;3.68827612124352e-199!GO:0043231;intracellular membrane-bound organelle;1.27251164333513e-198!GO:0043227;membrane-bound organelle;4.36252548377356e-198!GO:0005737;cytoplasm;4.84053949857406e-182!GO:0044422;organelle part;6.99780237107063e-152!GO:0044446;intracellular organelle part;9.85471494961364e-151!GO:0044444;cytoplasmic part;6.24128637612057e-138!GO:0032991;macromolecular complex;7.1823828370568e-96!GO:0044237;cellular metabolic process;3.43155273704691e-90!GO:0044238;primary metabolic process;2.71628493172826e-89!GO:0030529;ribonucleoprotein complex;2.81658551220296e-87!GO:0043170;macromolecule metabolic process;1.05313291269235e-80!GO:0005634;nucleus;3.9245975151962e-77!GO:0005739;mitochondrion;4.20417528698718e-77!GO:0043233;organelle lumen;2.55922819407102e-73!GO:0031974;membrane-enclosed lumen;2.55922819407102e-73!GO:0044428;nuclear part;1.92179115032942e-69!GO:0005515;protein binding;8.33925553765073e-69!GO:0003723;RNA binding;5.6259140850747e-61!GO:0005840;ribosome;1.5449021285418e-57!GO:0031090;organelle membrane;5.39914002739473e-54!GO:0044429;mitochondrial part;2.91325185989231e-52!GO:0003735;structural constituent of ribosome;6.90840924469169e-51!GO:0006412;translation;4.22642088981532e-49!GO:0043234;protein complex;2.02838269961397e-47!GO:0016043;cellular component organization and biogenesis;8.21406448653817e-47!GO:0009058;biosynthetic process;3.20522782990513e-46!GO:0043283;biopolymer metabolic process;1.72689984484226e-45!GO:0019538;protein metabolic process;2.1521450734497e-45!GO:0031967;organelle envelope;4.48590982942506e-45!GO:0031975;envelope;1.17180980873165e-44!GO:0033279;ribosomal subunit;2.61061407786467e-43!GO:0044249;cellular biosynthetic process;9.95839640626927e-43!GO:0006396;RNA processing;1.74658677886578e-42!GO:0031981;nuclear lumen;5.2126213845006e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.53657859914282e-41!GO:0009059;macromolecule biosynthetic process;6.40251811546691e-41!GO:0010467;gene expression;7.79341575646606e-41!GO:0044260;cellular macromolecule metabolic process;2.90748241315644e-40!GO:0044267;cellular protein metabolic process;1.93751138206872e-39!GO:0015031;protein transport;1.50241889698768e-38!GO:0005829;cytosol;3.18619057858721e-38!GO:0033036;macromolecule localization;7.84622380428856e-38!GO:0043228;non-membrane-bound organelle;1.667702536723e-36!GO:0043232;intracellular non-membrane-bound organelle;1.667702536723e-36!GO:0006996;organelle organization and biogenesis;3.1279691230364e-36!GO:0005740;mitochondrial envelope;2.31942869248023e-35!GO:0008104;protein localization;3.38061259526868e-35!GO:0045184;establishment of protein localization;4.89256983296966e-35!GO:0031966;mitochondrial membrane;3.23242335697208e-33!GO:0006259;DNA metabolic process;1.15365221840194e-32!GO:0046907;intracellular transport;1.9872442304932e-32!GO:0019866;organelle inner membrane;4.7231676458728e-32!GO:0016071;mRNA metabolic process;6.97063542095423e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.61822714865669e-31!GO:0065003;macromolecular complex assembly;2.69786306241844e-30!GO:0005743;mitochondrial inner membrane;3.14339609170497e-30!GO:0008380;RNA splicing;2.35031767767694e-29!GO:0022607;cellular component assembly;1.74874282374787e-27!GO:0006397;mRNA processing;1.92636581054709e-27!GO:0006886;intracellular protein transport;4.03831641786548e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.61146608247425e-26!GO:0005654;nucleoplasm;1.39368859616066e-24!GO:0007049;cell cycle;2.5149545812151e-24!GO:0044445;cytosolic part;1.23854709317336e-23!GO:0015934;large ribosomal subunit;1.27959793415814e-22!GO:0003676;nucleic acid binding;1.31272936461393e-22!GO:0044455;mitochondrial membrane part;6.82024755237394e-22!GO:0005681;spliceosome;6.84733506503e-22!GO:0015935;small ribosomal subunit;8.75568765197573e-22!GO:0006119;oxidative phosphorylation;2.88429770700024e-21!GO:0031980;mitochondrial lumen;5.7730372262279e-21!GO:0005759;mitochondrial matrix;5.7730372262279e-21!GO:0051649;establishment of cellular localization;2.10454164960802e-20!GO:0044451;nucleoplasm part;2.49348511854234e-20!GO:0051641;cellular localization;3.06760645418936e-20!GO:0012505;endomembrane system;5.96065695212693e-20!GO:0022402;cell cycle process;6.55791518894238e-20!GO:0000278;mitotic cell cycle;1.19498722964633e-19!GO:0005783;endoplasmic reticulum;8.89488273389427e-19!GO:0000166;nucleotide binding;1.06207175043736e-18!GO:0006457;protein folding;1.67454084694268e-18!GO:0005730;nucleolus;2.58120009966094e-18!GO:0005746;mitochondrial respiratory chain;5.8031403298443e-18!GO:0051186;cofactor metabolic process;1.51892633888885e-17!GO:0048770;pigment granule;3.14905414099474e-17!GO:0042470;melanosome;3.14905414099474e-17!GO:0044432;endoplasmic reticulum part;5.32409692380862e-17!GO:0016462;pyrophosphatase activity;5.32409692380862e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.43891455406049e-17!GO:0016874;ligase activity;6.98827423430805e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.81796078895848e-17!GO:0005694;chromosome;1.02981239632604e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.85608211903035e-16!GO:0016070;RNA metabolic process;2.71982265197474e-16!GO:0017111;nucleoside-triphosphatase activity;3.08636433314699e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.33934852134835e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.23491377446981e-16!GO:0003954;NADH dehydrogenase activity;7.23491377446981e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.23491377446981e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.47746805671508e-16!GO:0005761;mitochondrial ribosome;7.63335343030786e-16!GO:0000313;organellar ribosome;7.63335343030786e-16!GO:0006974;response to DNA damage stimulus;8.57273845857916e-16!GO:0044427;chromosomal part;1.25584353615513e-15!GO:0022403;cell cycle phase;2.91735994415785e-15!GO:0051276;chromosome organization and biogenesis;3.1353943618834e-15!GO:0006512;ubiquitin cycle;1.23250270404239e-14!GO:0005794;Golgi apparatus;2.7013162445287e-14!GO:0007067;mitosis;2.93668641657113e-14!GO:0000087;M phase of mitotic cell cycle;3.03717682197649e-14!GO:0006605;protein targeting;3.79392816346346e-14!GO:0008134;transcription factor binding;4.36444144300488e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.80466374837354e-14!GO:0042773;ATP synthesis coupled electron transport;4.80466374837354e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.01275675537727e-14!GO:0045271;respiratory chain complex I;6.01275675537727e-14!GO:0005747;mitochondrial respiratory chain complex I;6.01275675537727e-14!GO:0022618;protein-RNA complex assembly;9.40661358931557e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.32475881426989e-13!GO:0044265;cellular macromolecule catabolic process;1.76538511283024e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.92674118014426e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.97904355512083e-13!GO:0006281;DNA repair;2.35627391020176e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.72696757220671e-13!GO:0006732;coenzyme metabolic process;2.84254875641095e-13!GO:0043285;biopolymer catabolic process;4.15027356366978e-13!GO:0032553;ribonucleotide binding;5.56039000331431e-13!GO:0032555;purine ribonucleotide binding;5.56039000331431e-13!GO:0006260;DNA replication;5.96802777982081e-13!GO:0006323;DNA packaging;7.00445806907362e-13!GO:0017076;purine nucleotide binding;8.88463370643078e-13!GO:0043412;biopolymer modification;1.2540334398141e-12!GO:0051082;unfolded protein binding;1.82295878501728e-12!GO:0009057;macromolecule catabolic process;1.97154342017067e-12!GO:0044248;cellular catabolic process;2.49845353159681e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.81280459117573e-12!GO:0042254;ribosome biogenesis and assembly;3.23026411936675e-12!GO:0008135;translation factor activity, nucleic acid binding;3.32169446531772e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;4.26413793893012e-12!GO:0000375;RNA splicing, via transesterification reactions;4.26413793893012e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.26413793893012e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.4197569766154e-12!GO:0048193;Golgi vesicle transport;4.84485791003402e-12!GO:0005789;endoplasmic reticulum membrane;4.90934889041732e-12!GO:0009719;response to endogenous stimulus;6.35067923293398e-12!GO:0019941;modification-dependent protein catabolic process;6.42356042922642e-12!GO:0043632;modification-dependent macromolecule catabolic process;6.42356042922642e-12!GO:0005524;ATP binding;6.61699088547663e-12!GO:0006511;ubiquitin-dependent protein catabolic process;8.21724431050023e-12!GO:0044257;cellular protein catabolic process;9.14922089695695e-12!GO:0032559;adenyl ribonucleotide binding;1.19062288956129e-11!GO:0000279;M phase;1.36873524476908e-11!GO:0009055;electron carrier activity;2.07226137583506e-11!GO:0030554;adenyl nucleotide binding;2.8248167261143e-11!GO:0006464;protein modification process;3.60839979342073e-11!GO:0051301;cell division;3.74393381339459e-11!GO:0005793;ER-Golgi intermediate compartment;4.03045924907881e-11!GO:0030163;protein catabolic process;5.76144270850067e-11!GO:0005635;nuclear envelope;7.25891256239092e-11!GO:0051726;regulation of cell cycle;8.08683156853908e-11!GO:0000074;regulation of progression through cell cycle;1.13301046648905e-10!GO:0000785;chromatin;1.2898976620384e-10!GO:0006333;chromatin assembly or disassembly;1.3177944466011e-10!GO:0006399;tRNA metabolic process;1.39597629937589e-10!GO:0065004;protein-DNA complex assembly;1.46414806215693e-10!GO:0031965;nuclear membrane;2.04976898195247e-10!GO:0044453;nuclear membrane part;2.68512264195369e-10!GO:0016192;vesicle-mediated transport;5.83390649977107e-10!GO:0012501;programmed cell death;5.89553222751316e-10!GO:0006913;nucleocytoplasmic transport;6.91890632494762e-10!GO:0006334;nucleosome assembly;9.72743041181568e-10!GO:0006915;apoptosis;1.08990955587116e-09!GO:0051169;nuclear transport;1.44731180186125e-09!GO:0006163;purine nucleotide metabolic process;1.88758710611361e-09!GO:0051188;cofactor biosynthetic process;1.90457636320228e-09!GO:0009259;ribonucleotide metabolic process;2.05526285322138e-09!GO:0016604;nuclear body;2.30035021398575e-09!GO:0003743;translation initiation factor activity;2.31081608794357e-09!GO:0031497;chromatin assembly;2.65366122870849e-09!GO:0043687;post-translational protein modification;2.83202420273042e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.03639129372154e-09!GO:0003712;transcription cofactor activity;3.44810714308291e-09!GO:0065002;intracellular protein transport across a membrane;6.22543337022134e-09!GO:0008639;small protein conjugating enzyme activity;6.69422451558988e-09!GO:0009150;purine ribonucleotide metabolic process;6.87417779181439e-09!GO:0008219;cell death;7.77372549895383e-09!GO:0016265;death;7.77372549895383e-09!GO:0042623;ATPase activity, coupled;7.87653105136954e-09!GO:0015630;microtubule cytoskeleton;8.5282884947035e-09!GO:0006164;purine nucleotide biosynthetic process;1.15020416523807e-08!GO:0006461;protein complex assembly;1.16139294515543e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.20952316681197e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.20952316681197e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.20952316681197e-08!GO:0017038;protein import;1.39041676368661e-08!GO:0006364;rRNA processing;1.45505226298195e-08!GO:0004842;ubiquitin-protein ligase activity;1.52767526007738e-08!GO:0016740;transferase activity;1.64479945705149e-08!GO:0016887;ATPase activity;1.69057189542541e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.69480215379478e-08!GO:0008565;protein transporter activity;1.69766975580345e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.69943867363304e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.46333531685937e-08!GO:0009260;ribonucleotide biosynthetic process;2.47875266862899e-08!GO:0005643;nuclear pore;2.53457086721485e-08!GO:0007005;mitochondrion organization and biogenesis;2.89983785138096e-08!GO:0006413;translational initiation;2.99837161137999e-08!GO:0009141;nucleoside triphosphate metabolic process;3.33610250812745e-08!GO:0019787;small conjugating protein ligase activity;3.73211564393323e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.07744214990097e-08!GO:0043038;amino acid activation;4.46201156918905e-08!GO:0006418;tRNA aminoacylation for protein translation;4.46201156918905e-08!GO:0043039;tRNA aminoacylation;4.46201156918905e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.61118778314402e-08!GO:0016072;rRNA metabolic process;4.73999752629703e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.05476859330347e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.00199062852433e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.00199062852433e-07!GO:0048523;negative regulation of cellular process;1.25763560202021e-07!GO:0006446;regulation of translational initiation;1.30218816911251e-07!GO:0016491;oxidoreductase activity;1.30218816911251e-07!GO:0009060;aerobic respiration;1.42886840361951e-07!GO:0016881;acid-amino acid ligase activity;1.45847473019739e-07!GO:0050794;regulation of cellular process;1.67851063324025e-07!GO:0030120;vesicle coat;1.89752854047486e-07!GO:0030662;coated vesicle membrane;1.89752854047486e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.73632616546611e-07!GO:0006366;transcription from RNA polymerase II promoter;2.85551282798938e-07!GO:0005788;endoplasmic reticulum lumen;3.03145272733954e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.20492818833783e-07!GO:0048475;coated membrane;3.49895708573714e-07!GO:0030117;membrane coat;3.49895708573714e-07!GO:0009056;catabolic process;3.49895708573714e-07!GO:0009117;nucleotide metabolic process;3.8507080925833e-07!GO:0016568;chromatin modification;3.95575695284969e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.41602674939502e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.41602674939502e-07!GO:0016607;nuclear speck;4.45696102645638e-07!GO:0046930;pore complex;4.55493299129166e-07!GO:0015986;ATP synthesis coupled proton transport;5.11166021074631e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.11166021074631e-07!GO:0046034;ATP metabolic process;5.14377511948113e-07!GO:0051329;interphase of mitotic cell cycle;5.26639271859927e-07!GO:0009108;coenzyme biosynthetic process;5.60522563400137e-07!GO:0005768;endosome;6.07185751509635e-07!GO:0003697;single-stranded DNA binding;6.64175154771453e-07!GO:0016779;nucleotidyltransferase activity;7.64658580687243e-07!GO:0051325;interphase;8.5585586647814e-07!GO:0045333;cellular respiration;8.77878125601547e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.45995205705621e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.45995205705621e-07!GO:0016853;isomerase activity;1.10521385090371e-06!GO:0044431;Golgi apparatus part;1.1858497960056e-06!GO:0042981;regulation of apoptosis;1.40385829370291e-06!GO:0019829;cation-transporting ATPase activity;1.40542655586839e-06!GO:0004386;helicase activity;1.43791883852477e-06!GO:0043067;regulation of programmed cell death;1.56674754134756e-06!GO:0005667;transcription factor complex;1.75376757019961e-06!GO:0005762;mitochondrial large ribosomal subunit;2.45380283044613e-06!GO:0000315;organellar large ribosomal subunit;2.45380283044613e-06!GO:0008026;ATP-dependent helicase activity;2.72324900099405e-06!GO:0031324;negative regulation of cellular metabolic process;2.85531073851848e-06!GO:0045259;proton-transporting ATP synthase complex;2.8584087947674e-06!GO:0006091;generation of precursor metabolites and energy;3.0343332713992e-06!GO:0043566;structure-specific DNA binding;3.25850884084104e-06!GO:0006099;tricarboxylic acid cycle;3.6390728610533e-06!GO:0046356;acetyl-CoA catabolic process;3.6390728610533e-06!GO:0048519;negative regulation of biological process;3.65730355652283e-06!GO:0005813;centrosome;4.04058774492066e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.4251493521841e-06!GO:0006754;ATP biosynthetic process;4.5387253973721e-06!GO:0006753;nucleoside phosphate metabolic process;4.5387253973721e-06!GO:0008654;phospholipid biosynthetic process;4.80986082781453e-06!GO:0006084;acetyl-CoA metabolic process;5.61368298846639e-06!GO:0016563;transcription activator activity;5.72873758778842e-06!GO:0032446;protein modification by small protein conjugation;6.876488951942e-06!GO:0051246;regulation of protein metabolic process;6.93220985643412e-06!GO:0006403;RNA localization;7.13414085689326e-06!GO:0005819;spindle;7.6409504179889e-06!GO:0050657;nucleic acid transport;8.54347637062177e-06!GO:0051236;establishment of RNA localization;8.54347637062177e-06!GO:0050658;RNA transport;8.54347637062177e-06!GO:0003899;DNA-directed RNA polymerase activity;8.75235824041437e-06!GO:0051187;cofactor catabolic process;9.1697742238221e-06!GO:0016567;protein ubiquitination;1.02922688634673e-05!GO:0005815;microtubule organizing center;1.05048434596716e-05!GO:0003924;GTPase activity;1.06914188429053e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.10837081764116e-05!GO:0051170;nuclear import;1.35143541276541e-05!GO:0009109;coenzyme catabolic process;1.35143541276541e-05!GO:0044440;endosomal part;1.37776111097159e-05!GO:0010008;endosome membrane;1.37776111097159e-05!GO:0005770;late endosome;1.39693266758827e-05!GO:0006752;group transfer coenzyme metabolic process;1.41947210821715e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.4963975299376e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.65402256744229e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.72505208787014e-05!GO:0019899;enzyme binding;1.73295646909487e-05!GO:0000786;nucleosome;2.12843435756386e-05!GO:0006606;protein import into nucleus;2.14636947461801e-05!GO:0000245;spliceosome assembly;2.26394380061648e-05!GO:0009892;negative regulation of metabolic process;2.61641365260915e-05!GO:0019843;rRNA binding;2.61645670627422e-05!GO:0006793;phosphorus metabolic process;2.68390766111535e-05!GO:0006796;phosphate metabolic process;2.68390766111535e-05!GO:0045786;negative regulation of progression through cell cycle;2.78753493999838e-05!GO:0005773;vacuole;2.80997870378487e-05!GO:0000139;Golgi membrane;3.3632402146403e-05!GO:0043623;cellular protein complex assembly;3.4349495943302e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.5238341551629e-05!GO:0019867;outer membrane;3.61400054008062e-05!GO:0005905;coated pit;3.71782454329216e-05!GO:0006916;anti-apoptosis;3.79734954956777e-05!GO:0000151;ubiquitin ligase complex;3.98677259050333e-05!GO:0016564;transcription repressor activity;4.17398980112603e-05!GO:0031968;organelle outer membrane;4.27807573201348e-05!GO:0005798;Golgi-associated vesicle;4.72435534162542e-05!GO:0050789;regulation of biological process;4.76722664664393e-05!GO:0006261;DNA-dependent DNA replication;4.86801254829387e-05!GO:0030867;rough endoplasmic reticulum membrane;5.32419046093508e-05!GO:0003713;transcription coactivator activity;5.67567911430986e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.71630590047584e-05!GO:0045454;cell redox homeostasis;5.98653393132643e-05!GO:0000314;organellar small ribosomal subunit;5.98653393132643e-05!GO:0005763;mitochondrial small ribosomal subunit;5.98653393132643e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.36074143441008e-05!GO:0016859;cis-trans isomerase activity;6.57700688614625e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.96030657011213e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.96030657011213e-05!GO:0006626;protein targeting to mitochondrion;7.43702039744189e-05!GO:0043069;negative regulation of programmed cell death;7.46095583480453e-05!GO:0031988;membrane-bound vesicle;9.63579501648088e-05!GO:0016481;negative regulation of transcription;9.66501927500375e-05!GO:0005741;mitochondrial outer membrane;9.70589563021793e-05!GO:0043066;negative regulation of apoptosis;9.70589563021793e-05!GO:0008361;regulation of cell size;9.81851785738408e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.000100559700297602!GO:0016049;cell growth;0.000102063054836897!GO:0003714;transcription corepressor activity;0.000103162111129856!GO:0033116;ER-Golgi intermediate compartment membrane;0.000103213417895926!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000105708702264739!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000108890846411444!GO:0051427;hormone receptor binding;0.000109442862465524!GO:0004298;threonine endopeptidase activity;0.000109643844112509!GO:0016310;phosphorylation;0.000122653821970676!GO:0030133;transport vesicle;0.000125065461960571!GO:0000323;lytic vacuole;0.000147315281318197!GO:0005764;lysosome;0.000147315281318197!GO:0000775;chromosome, pericentric region;0.000155598956556609!GO:0007010;cytoskeleton organization and biogenesis;0.000156559105612969!GO:0016126;sterol biosynthetic process;0.000158072277551205!GO:0051028;mRNA transport;0.000158072277551205!GO:0008094;DNA-dependent ATPase activity;0.000163403681246163!GO:0016787;hydrolase activity;0.000172690128888747!GO:0005048;signal sequence binding;0.000174156508297027!GO:0046474;glycerophospholipid biosynthetic process;0.00017488174640789!GO:0005657;replication fork;0.000184004749566153!GO:0006839;mitochondrial transport;0.000194990796358453!GO:0043681;protein import into mitochondrion;0.000195546155752253!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000198539016625089!GO:0031252;leading edge;0.000202725607359728!GO:0019222;regulation of metabolic process;0.00022028520114837!GO:0035257;nuclear hormone receptor binding;0.000225726177835467!GO:0031410;cytoplasmic vesicle;0.000256181367391423!GO:0001558;regulation of cell growth;0.000264906109387957!GO:0008610;lipid biosynthetic process;0.000267830398453491!GO:0044262;cellular carbohydrate metabolic process;0.000315192126374983!GO:0031982;vesicle;0.00031694316142228!GO:0006613;cotranslational protein targeting to membrane;0.000317166060791526!GO:0007006;mitochondrial membrane organization and biogenesis;0.000386577560410653!GO:0000075;cell cycle checkpoint;0.000392099696016617!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000413018440021697!GO:0005791;rough endoplasmic reticulum;0.000448855023887882!GO:0005874;microtubule;0.00046773037927117!GO:0030036;actin cytoskeleton organization and biogenesis;0.000483140689494072!GO:0007051;spindle organization and biogenesis;0.000486314954143193!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000490241849465491!GO:0005769;early endosome;0.000494142085156897!GO:0030176;integral to endoplasmic reticulum membrane;0.000498190333110643!GO:0008033;tRNA processing;0.000526823181692776!GO:0008250;oligosaccharyl transferase complex;0.000550504328504511!GO:0009165;nucleotide biosynthetic process;0.000607504603834958!GO:0005885;Arp2/3 protein complex;0.000737833469951444!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000737833469951444!GO:0051789;response to protein stimulus;0.000892822764040196!GO:0006986;response to unfolded protein;0.000892822764040196!GO:0006695;cholesterol biosynthetic process;0.000893141273792556!GO:0065009;regulation of a molecular function;0.000925587169900394!GO:0043021;ribonucleoprotein binding;0.000934109301743118!GO:0005525;GTP binding;0.000991328650458547!GO:0051252;regulation of RNA metabolic process;0.00110109229592866!GO:0051920;peroxiredoxin activity;0.00111928620258708!GO:0003684;damaged DNA binding;0.00118338162580971!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00120781629563025!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00121076925597527!GO:0016741;transferase activity, transferring one-carbon groups;0.00122429473492917!GO:0030132;clathrin coat of coated pit;0.00126149869173472!GO:0046489;phosphoinositide biosynthetic process;0.00126507150160651!GO:0030880;RNA polymerase complex;0.00126507150160651!GO:0018196;peptidyl-asparagine modification;0.00135675325154048!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00135675325154048!GO:0003682;chromatin binding;0.00141534594602341!GO:0008168;methyltransferase activity;0.00143460220323724!GO:0043488;regulation of mRNA stability;0.00146807452595402!GO:0043487;regulation of RNA stability;0.00146807452595402!GO:0003724;RNA helicase activity;0.00147120467199524!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00147437696149546!GO:0005684;U2-dependent spliceosome;0.00149447957509481!GO:0000082;G1/S transition of mitotic cell cycle;0.00151146393934041!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00152561597357753!GO:0046467;membrane lipid biosynthetic process;0.0017169878925006!GO:0051168;nuclear export;0.00173642380340029!GO:0006414;translational elongation;0.00184721382534921!GO:0042802;identical protein binding;0.00185336252500352!GO:0030118;clathrin coat;0.00193939019609467!GO:0043284;biopolymer biosynthetic process;0.00195281012970984!GO:0044452;nucleolar part;0.00221907175471641!GO:0048522;positive regulation of cellular process;0.00226555277760773!GO:0006383;transcription from RNA polymerase III promoter;0.0023663888723817!GO:0006595;polyamine metabolic process;0.00242464573535149!GO:0005774;vacuolar membrane;0.00249168801042141!GO:0004576;oligosaccharyl transferase activity;0.00251975962547085!GO:0031902;late endosome membrane;0.00256216034720381!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00259829801584337!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00259829801584337!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00259829801584337!GO:0003678;DNA helicase activity;0.00262149512551462!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00273681580794731!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00273681580794731!GO:0006778;porphyrin metabolic process;0.00283226056380499!GO:0033013;tetrapyrrole metabolic process;0.00283226056380499!GO:0007088;regulation of mitosis;0.00283382780421339!GO:0015631;tubulin binding;0.00295781692003736!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00305216624863569!GO:0000428;DNA-directed RNA polymerase complex;0.00305216624863569!GO:0046483;heterocycle metabolic process;0.00317262016358752!GO:0006979;response to oxidative stress;0.003222380042601!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00329996815576209!GO:0015002;heme-copper terminal oxidase activity;0.00329996815576209!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00329996815576209!GO:0004129;cytochrome-c oxidase activity;0.00329996815576209!GO:0030658;transport vesicle membrane;0.00332835633502683!GO:0030029;actin filament-based process;0.00333071970589517!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00353857550624726!GO:0030663;COPI coated vesicle membrane;0.00355289915583292!GO:0030126;COPI vesicle coat;0.00355289915583292!GO:0045892;negative regulation of transcription, DNA-dependent;0.00380099953910101!GO:0006402;mRNA catabolic process;0.00383430398465136!GO:0000059;protein import into nucleus, docking;0.00395875689380308!GO:0016363;nuclear matrix;0.00398945404799441!GO:0031072;heat shock protein binding;0.00409183076853443!GO:0032508;DNA duplex unwinding;0.00412575781689464!GO:0032392;DNA geometric change;0.00412575781689464!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00419929265276391!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00426633978690177!GO:0008632;apoptotic program;0.00441103535393466!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00452701868315179!GO:0015399;primary active transmembrane transporter activity;0.00452701868315179!GO:0016044;membrane organization and biogenesis;0.0046787951877067!GO:0006779;porphyrin biosynthetic process;0.00469455674619672!GO:0033014;tetrapyrrole biosynthetic process;0.00469455674619672!GO:0006612;protein targeting to membrane;0.00481172072692862!GO:0006740;NADPH regeneration;0.00481172072692862!GO:0006098;pentose-phosphate shunt;0.00481172072692862!GO:0006082;organic acid metabolic process;0.00484429837428951!GO:0003729;mRNA binding;0.00490053642345162!GO:0032561;guanyl ribonucleotide binding;0.00494089236279376!GO:0019001;guanyl nucleotide binding;0.00494089236279376!GO:0030137;COPI-coated vesicle;0.00494089236279376!GO:0017166;vinculin binding;0.00501317885967054!GO:0040008;regulation of growth;0.00502730672233949!GO:0008139;nuclear localization sequence binding;0.00504441052043652!GO:0042158;lipoprotein biosynthetic process;0.00512739668153205!GO:0019752;carboxylic acid metabolic process;0.00515056056501824!GO:0006497;protein amino acid lipidation;0.00543298535149847!GO:0030134;ER to Golgi transport vesicle;0.00543298535149847!GO:0006268;DNA unwinding during replication;0.00551756545276364!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00562122675751152!GO:0040029;regulation of gene expression, epigenetic;0.00562122675751152!GO:0007243;protein kinase cascade;0.00568250101234181!GO:0016272;prefoldin complex;0.00615983075327701!GO:0044437;vacuolar part;0.00633856398683219!GO:0008092;cytoskeletal protein binding;0.00636592032100672!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00655558982686007!GO:0006289;nucleotide-excision repair;0.00671406596134445!GO:0048471;perinuclear region of cytoplasm;0.00688955129386113!GO:0004674;protein serine/threonine kinase activity;0.00693888559248092!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0069837497107938!GO:0006818;hydrogen transport;0.00717539368222745!GO:0030119;AP-type membrane coat adaptor complex;0.0071796896622592!GO:0015992;proton transport;0.00718106415242677!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0072160048642673!GO:0000049;tRNA binding;0.00726442879547469!GO:0005765;lysosomal membrane;0.00726442879547469!GO:0019206;nucleoside kinase activity;0.00746741390984878!GO:0051539;4 iron, 4 sulfur cluster binding;0.00749318773663591!GO:0008186;RNA-dependent ATPase activity;0.00752053830021752!GO:0051087;chaperone binding;0.00792132276775564!GO:0042168;heme metabolic process;0.00811833385571037!GO:0007346;regulation of progression through mitotic cell cycle;0.00820333598203371!GO:0006506;GPI anchor biosynthetic process;0.00832407566943894!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0083622561466429!GO:0048487;beta-tubulin binding;0.00866707337846437!GO:0030660;Golgi-associated vesicle membrane;0.00881527124740275!GO:0045792;negative regulation of cell size;0.00902216165852866!GO:0005758;mitochondrial intermembrane space;0.00910834593551393!GO:0007050;cell cycle arrest;0.00923843590322656!GO:0030125;clathrin vesicle coat;0.00929498162694739!GO:0030665;clathrin coated vesicle membrane;0.00929498162694739!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00946880849118512!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00951270625396642!GO:0043414;biopolymer methylation;0.00972183649337436!GO:0005637;nuclear inner membrane;0.00974323264452298!GO:0006310;DNA recombination;0.00987229590510269!GO:0006220;pyrimidine nucleotide metabolic process;0.00993159306570462!GO:0006650;glycerophospholipid metabolic process;0.00993246114714237!GO:0006520;amino acid metabolic process;0.0100281915596927!GO:0030308;negative regulation of cell growth;0.0101551392911395!GO:0051540;metal cluster binding;0.0104125733459034!GO:0051536;iron-sulfur cluster binding;0.0104125733459034!GO:0006401;RNA catabolic process;0.0105483058595773!GO:0051287;NAD binding;0.01054953724374!GO:0050662;coenzyme binding;0.0105798413733989!GO:0051348;negative regulation of transferase activity;0.0107204847735696!GO:0009112;nucleobase metabolic process;0.0108526357280109!GO:0031323;regulation of cellular metabolic process;0.0108541823804686!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0108878676445958!GO:0033673;negative regulation of kinase activity;0.0112006829993613!GO:0006469;negative regulation of protein kinase activity;0.0112006829993613!GO:0065007;biological regulation;0.0113192897556006!GO:0030131;clathrin adaptor complex;0.011516492795846!GO:0030127;COPII vesicle coat;0.0118466707890501!GO:0012507;ER to Golgi transport vesicle membrane;0.0118466707890501!GO:0006505;GPI anchor metabolic process;0.0122371772692243!GO:0006891;intra-Golgi vesicle-mediated transport;0.0122853772911678!GO:0008629;induction of apoptosis by intracellular signals;0.0126639105846086!GO:0006302;double-strand break repair;0.0128605380709484!GO:0032259;methylation;0.013110893178153!GO:0006783;heme biosynthetic process;0.0134264491264013!GO:0000792;heterochromatin;0.0142843656935035!GO:0004527;exonuclease activity;0.0143113883885235!GO:0008047;enzyme activator activity;0.0145710501935158!GO:0006284;base-excision repair;0.0146998958134117!GO:0003711;transcription elongation regulator activity;0.0147784746012728!GO:0048468;cell development;0.0151352546466229!GO:0006350;transcription;0.015143373013478!GO:0006611;protein export from nucleus;0.0158757329742099!GO:0004004;ATP-dependent RNA helicase activity;0.0159526102092042!GO:0031970;organelle envelope lumen;0.0162469730420909!GO:0050790;regulation of catalytic activity;0.0171500766012658!GO:0051098;regulation of binding;0.0173512523852104!GO:0022890;inorganic cation transmembrane transporter activity;0.0178012392628323!GO:0045941;positive regulation of transcription;0.0178137848249494!GO:0009303;rRNA transcription;0.0178137848249494!GO:0006352;transcription initiation;0.0179067199415697!GO:0005862;muscle thin filament tropomyosin;0.0179364052927101!GO:0030041;actin filament polymerization;0.0181521256422688!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0187466482966247!GO:0006739;NADP metabolic process;0.0188156311907576!GO:0007093;mitotic cell cycle checkpoint;0.0190802806888122!GO:0000910;cytokinesis;0.0193457862889134!GO:0006509;membrane protein ectodomain proteolysis;0.0194010401850136!GO:0033619;membrane protein proteolysis;0.0194010401850136!GO:0031543;peptidyl-proline dioxygenase activity;0.0195964962698756!GO:0031529;ruffle organization and biogenesis;0.0195964962698756!GO:0051101;regulation of DNA binding;0.0196098724020098!GO:0005869;dynactin complex;0.019801994886999!GO:0051052;regulation of DNA metabolic process;0.0202640832689244!GO:0000123;histone acetyltransferase complex;0.0204214407316768!GO:0008286;insulin receptor signaling pathway;0.020521990931369!GO:0048037;cofactor binding;0.020521990931369!GO:0019798;procollagen-proline dioxygenase activity;0.0206384657045608!GO:0004518;nuclease activity;0.0207511874490179!GO:0030659;cytoplasmic vesicle membrane;0.0207577900981241!GO:0048500;signal recognition particle;0.0208278486584212!GO:0006118;electron transport;0.020904943253978!GO:0031124;mRNA 3'-end processing;0.020904943253978!GO:0007264;small GTPase mediated signal transduction;0.0210334551720073!GO:0007040;lysosome organization and biogenesis;0.021215659620689!GO:0003746;translation elongation factor activity;0.0212423917475445!GO:0043189;H4/H2A histone acetyltransferase complex;0.0216111341115077!GO:0000209;protein polyubiquitination;0.0219683540714103!GO:0006405;RNA export from nucleus;0.0222219259539383!GO:0035258;steroid hormone receptor binding;0.0222219259539383!GO:0030508;thiol-disulfide exchange intermediate activity;0.0222531287247032!GO:0000228;nuclear chromosome;0.0222531287247032!GO:0008637;apoptotic mitochondrial changes;0.0231325238914115!GO:0045936;negative regulation of phosphate metabolic process;0.0232364532602765!GO:0007033;vacuole organization and biogenesis;0.0233178857458952!GO:0008180;signalosome;0.0240270216898198!GO:0016569;covalent chromatin modification;0.0240776374356493!GO:0030521;androgen receptor signaling pathway;0.0244908349919499!GO:0000084;S phase of mitotic cell cycle;0.024565525392171!GO:0031272;regulation of pseudopodium formation;0.024565525392171!GO:0031269;pseudopodium formation;0.024565525392171!GO:0031344;regulation of cell projection organization and biogenesis;0.024565525392171!GO:0031268;pseudopodium organization and biogenesis;0.024565525392171!GO:0031346;positive regulation of cell projection organization and biogenesis;0.024565525392171!GO:0031274;positive regulation of pseudopodium formation;0.024565525392171!GO:0043433;negative regulation of transcription factor activity;0.0246959111610519!GO:0000096;sulfur amino acid metabolic process;0.0246959111610519!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0255391371259088!GO:0033559;unsaturated fatty acid metabolic process;0.0259315452658802!GO:0006636;unsaturated fatty acid biosynthetic process;0.0259315452658802!GO:0051128;regulation of cellular component organization and biogenesis;0.0259315452658802!GO:0015036;disulfide oxidoreductase activity;0.0260197441600143!GO:0016197;endosome transport;0.0264703527529469!GO:0005876;spindle microtubule;0.026535816056831!GO:0006007;glucose catabolic process;0.0266680770122325!GO:0000287;magnesium ion binding;0.0268008509259442!GO:0004003;ATP-dependent DNA helicase activity;0.0268008509259442!GO:0006730;one-carbon compound metabolic process;0.0268008509259442!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0268008509259442!GO:0010257;NADH dehydrogenase complex assembly;0.0268008509259442!GO:0033108;mitochondrial respiratory chain complex assembly;0.0268008509259442!GO:0005832;chaperonin-containing T-complex;0.0269085346271872!GO:0006458;'de novo' protein folding;0.0269085346271872!GO:0051084;'de novo' posttranslational protein folding;0.0269085346271872!GO:0043596;nuclear replication fork;0.0269085346271872!GO:0016860;intramolecular oxidoreductase activity;0.0270569495148015!GO:0006733;oxidoreduction coenzyme metabolic process;0.0274669397191152!GO:0005996;monosaccharide metabolic process;0.0281733441785016!GO:0030433;ER-associated protein catabolic process;0.0282029829641452!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0282029829641452!GO:0019318;hexose metabolic process;0.0282652663379878!GO:0000339;RNA cap binding;0.0285063693314102!GO:0051338;regulation of transferase activity;0.0285063693314102!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0287198387129006!GO:0045893;positive regulation of transcription, DNA-dependent;0.028769804111111!GO:0008538;proteasome activator activity;0.028833640092376!GO:0035267;NuA4 histone acetyltransferase complex;0.0289273414699316!GO:0008213;protein amino acid alkylation;0.0289273414699316!GO:0006479;protein amino acid methylation;0.0289273414699316!GO:0007021;tubulin folding;0.0290055479765802!GO:0016407;acetyltransferase activity;0.029421549467978!GO:0009451;RNA modification;0.0298140809813948!GO:0045926;negative regulation of growth;0.0299531021052451!GO:0030384;phosphoinositide metabolic process;0.0302985910108253!GO:0009116;nucleoside metabolic process;0.0303746881210244!GO:0008312;7S RNA binding;0.0307607578313216!GO:0031418;L-ascorbic acid binding;0.0309075363618344!GO:0005881;cytoplasmic microtubule;0.0309075363618344!GO:0006275;regulation of DNA replication;0.0312390487406746!GO:0003756;protein disulfide isomerase activity;0.0312390487406746!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0312390487406746!GO:0003690;double-stranded DNA binding;0.0318496493894277!GO:0006950;response to stress;0.0319033508844624!GO:0044433;cytoplasmic vesicle part;0.0319079222298035!GO:0030027;lamellipodium;0.0320891866462481!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0329132171976603!GO:0035035;histone acetyltransferase binding;0.0330325833940238!GO:0007017;microtubule-based process;0.0330890982328526!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0330890982328526!GO:0009262;deoxyribonucleotide metabolic process;0.0335395273406979!GO:0043492;ATPase activity, coupled to movement of substances;0.0335511397208039!GO:0043065;positive regulation of apoptosis;0.0335511397208039!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0336040462160672!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0336040462160672!GO:0016125;sterol metabolic process;0.0349357719408777!GO:0048144;fibroblast proliferation;0.0350363009737377!GO:0048145;regulation of fibroblast proliferation;0.0350363009737377!GO:0043022;ribosome binding;0.0350363009737377!GO:0030911;TPR domain binding;0.0350363009737377!GO:0000118;histone deacetylase complex;0.0352946059944613!GO:0046519;sphingoid metabolic process;0.0353776892962885!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0355857537125775!GO:0030145;manganese ion binding;0.0357625370739139!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0363460886734904!GO:0045039;protein import into mitochondrial inner membrane;0.0363460886734904!GO:0000030;mannosyltransferase activity;0.0367893317805258!GO:0008154;actin polymerization and/or depolymerization;0.0370292833146829!GO:0006607;NLS-bearing substrate import into nucleus;0.0371201461934107!GO:0016301;kinase activity;0.0372408689189601!GO:0007052;mitotic spindle organization and biogenesis;0.0377837001692273!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0377990501083673!GO:0050178;phenylpyruvate tautomerase activity;0.0378841758139234!GO:0043068;positive regulation of programmed cell death;0.0379883091155417!GO:0042393;histone binding;0.0381538978815868!GO:0000776;kinetochore;0.038288678646944!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0391783173431532!GO:0031301;integral to organelle membrane;0.039211285956236!GO:0045334;clathrin-coated endocytic vesicle;0.0392623820481177!GO:0008652;amino acid biosynthetic process;0.0394593440084463!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0394917739509315!GO:0000178;exosome (RNase complex);0.0396555894676786!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0397032624899958!GO:0022415;viral reproductive process;0.0398212867341947!GO:0001726;ruffle;0.0399753743424159!GO:0016584;nucleosome positioning;0.0404571946536241!GO:0046966;thyroid hormone receptor binding;0.0406814148940171!GO:0003887;DNA-directed DNA polymerase activity;0.0422718546249086!GO:0007034;vacuolar transport;0.0423152889007864!GO:0006807;nitrogen compound metabolic process;0.0424828165344232!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0426363289376335!GO:0045047;protein targeting to ER;0.0426363289376335!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0426993756781562!GO:0005096;GTPase activator activity;0.0427547055667821!GO:0006354;RNA elongation;0.0427547055667821!GO:0006596;polyamine biosynthetic process;0.0427615735044699!GO:0030128;clathrin coat of endocytic vesicle;0.0428228182675211!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0428228182675211!GO:0030122;AP-2 adaptor complex;0.0428228182675211!GO:0031625;ubiquitin protein ligase binding;0.0429281968358365!GO:0008320;protein transmembrane transporter activity;0.0435013741821987!GO:0016570;histone modification;0.0440959950292621!GO:0006338;chromatin remodeling;0.0446057256265538!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0446057256265538!GO:0030833;regulation of actin filament polymerization;0.0450692960872404!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0451530358338811!GO:0048518;positive regulation of biological process;0.0451530358338811!GO:0042770;DNA damage response, signal transduction;0.0452604726030973!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0453570153326071!GO:0004177;aminopeptidase activity;0.04560312799481!GO:0005652;nuclear lamina;0.0456632630821047!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0456964105979716!GO:0010468;regulation of gene expression;0.0460679559771407!GO:0006790;sulfur metabolic process;0.0466878223218228!GO:0009166;nucleotide catabolic process;0.0467382909707787!GO:0004680;casein kinase activity;0.0467382909707787!GO:0022884;macromolecule transmembrane transporter activity;0.0469902379347585!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0469902379347585!GO:0030031;cell projection biogenesis;0.0470370284339849!GO:0051775;response to redox state;0.0470370284339849!GO:0006980;redox signal response;0.0470370284339849!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0475856742034393!GO:0006144;purine base metabolic process;0.0475856742034393!GO:0006066;alcohol metabolic process;0.0478225959068218!GO:0031371;ubiquitin conjugating enzyme complex;0.0489661826444877!GO:0007059;chromosome segregation;0.0495814057424206 | |||
|sample_id=11697 | |sample_id=11697 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|top_motifs=GTF2A1,2:1.47009036496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40157186282;HOX{A5,B5}:1.3246201563;HES1:1.13271695483;GZF1:1.10670746952;GFI1:1.09876734073;RXR{A,B,G}:1.08119249382;NR5A1,2:1.05694896832;ESR1:1.03251932829;RXRA_VDR{dimer}:1.00975409673;NR3C1:0.952693973839;GFI1B:0.888687090371;PPARG:0.852634440137;EN1,2:0.811735815227;PBX1:0.799718679969;IKZF1:0.798888195208;POU2F1..3:0.781396406569;ZBTB6:0.742519264136;PAX8:0.734093463209;ZNF238:0.711246695545;LHX3,4:0.689508337418;EBF1:0.671490387074;ZIC1..3:0.653486433891;ZNF423:0.645710858459;NR1H4:0.644779093797;XCPE1{core}:0.626999910307;TLX1..3_NFIC{dimer}:0.569050687092;TFAP4:0.550374039796;NFY{A,B,C}:0.520001547902;ZNF148:0.508462473345;E2F1..5:0.50136127248;LEF1_TCF7_TCF7L1,2:0.478382337823;SPZ1:0.470451952493;SRF:0.43891701439;TFCP2:0.435071789909;TFAP2{A,C}:0.395666072338;NFE2L1:0.393821118153;GLI1..3:0.392918495423;TOPORS:0.385641862986;ATF6:0.375284396222;TEAD1:0.364156450105;AR:0.357522390951;RREB1:0.346983709186;ZNF143:0.34034421915;BACH2:0.31444283396;KLF4:0.299926653076;ALX4:0.293412053537;UFEwm:0.293175978821;bHLH_family:0.292958585714;SOX17:0.284557452441;SOX{8,9,10}:0.280566181923;YY1:0.273275430057;TFDP1:0.268035803715;POU6F1:0.264783848833;TAL1_TCF{3,4,12}:0.260039570407;PAX5:0.257715399494;TP53:0.251297582209;CDC5L:0.250954689288;STAT5{A,B}:0.240582450603;NFE2L2:0.225380717804;HIC1:0.201150866627;ONECUT1,2:0.197238304219;HNF4A_NR2F1,2:0.194515106299;MZF1:0.189128127501;PDX1:0.157377019728;MTF1:0.155640261948;PAX3,7:0.146802392968;ESRRA:0.144390985022;NANOG:0.143273527127;MYB:0.132985223543;TBP:0.121105098202;TBX4,5:0.119525776059;ARID5B:0.115817608743;REST:0.100063759939;SP1:0.0962476801376;FOS_FOS{B,L1}_JUN{B,D}:0.0936925118437;GTF2I:0.092485956303;HOX{A6,A7,B6,B7}:0.0836719763225;HAND1,2:0.0798093020487;AIRE:0.0472406064835;NFE2:0.0470772254337;HOXA9_MEIS1:0.0209416113561;HNF1A:0.015171816638;FOSL2:-0.000729257561905;RUNX1..3:-0.0108214220758;ELK1,4_GABP{A,B1}:-0.0141962472576;NKX2-3_NKX2-5:-0.0141965716972;TFAP2B:-0.0304864317541;POU5F1:-0.0532971247221;RFX1:-0.0533707966432;FOXL1:-0.0660958013864;NR6A1:-0.0865846668755;HOX{A4,D4}:-0.0991083840505;NKX2-2,8:-0.115623451678;NFIX:-0.117404106873;PRRX1,2:-0.130413893135;EGR1..3:-0.130856892879;NRF1:-0.132967120841;HLF:-0.134434606167;FOXD3:-0.144072779716;MAFB:-0.164320242262;CRX:-0.176251160188;MYBL2:-0.176776099969;POU1F1:-0.183227170096;PAX1,9:-0.199548934877;POU3F1..4:-0.202702648917;STAT2,4,6:-0.218782645832;AHR_ARNT_ARNT2:-0.22164654644;MTE{core}:-0.234902393844;DMAP1_NCOR{1,2}_SMARC:-0.243444008815;MEF2{A,B,C,D}:-0.249431069864;PRDM1:-0.269511037876;PATZ1:-0.2769244617;NHLH1,2:-0.286582587906;NANOG{mouse}:-0.293280532822;HSF1,2:-0.303793667259;NFKB1_REL_RELA:-0.31990688852;XBP1:-0.323036746821;TEF:-0.323839645121;HBP1_HMGB_SSRP1_UBTF:-0.336511388745;OCT4_SOX2{dimer}:-0.340061161089;JUN:-0.358052706926;MED-1{core}:-0.36238404283;NFATC1..3:-0.366110727939;HMX1:-0.374294965889;BREu{core}:-0.391434403631;GATA6:-0.417063749108;CUX2:-0.422112457958;SOX5:-0.423394959728;MAZ:-0.425152013681;ETS1,2:-0.458086096294;FOX{I1,J2}:-0.474558089346;SPIB:-0.478917715657;EVI1:-0.487394742679;ZFP161:-0.495077897812;LMO2:-0.495511288787;SPI1:-0.51095237173;CEBPA,B_DDIT3:-0.512751162925;PAX4:-0.524250747194;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548428456624;SMAD1..7,9:-0.562622556135;MYOD1:-0.564130624468;ELF1,2,4:-0.58207920792;GATA4:-0.586059047207;SOX2:-0.590608995495;CREB1:-0.594370485372;RFX2..5_RFXANK_RFXAP:-0.606171534148;SNAI1..3:-0.63394630443;NFIL3:-0.644891787577;NKX6-1,2:-0.653803103074;PITX1..3:-0.674558008402;NKX3-1:-0.682598805896;FOXM1:-0.701492791979;T:-0.70297640379;RORA:-0.708211284746;MYFfamily:-0.714813744028;ADNP_IRX_SIX_ZHX:-0.730206029896;VSX1,2:-0.738059676682;FOXA2:-0.785527629654;GCM1,2:-0.826455387851;ZEB1:-0.834005086635;ALX1:-0.837273920814;NKX3-2:-0.849834313293;ATF5_CREB3:-0.864291678885;FOXQ1:-0.872122390963;PAX2:-0.881066203508;ZNF384:-0.90417039246;FOXP3:-0.915583029024;ZBTB16:-0.920749470644;TGIF1:-0.932967060494;ATF2:-0.939017536987;PAX6:-0.949597990205;FOXP1:-0.989754670914;FOX{F1,F2,J1}:-1.01848912514;DBP:-1.03809536984;IRF1,2:-1.03836776701;EP300:-1.04577367661;STAT1,3:-1.04650803446;HIF1A:-1.05465593001;NKX2-1,4:-1.1090779406;SREBF1,2:-1.11857241432;ATF4:-1.12619886271;RBPJ:-1.13715208168;FOX{D1,D2}:-1.15860506634;TLX2:-1.19811215038;FOXO1,3,4:-1.21243257987;CDX1,2,4:-1.29421394513;IRF7:-1.31832138559;HMGA1,2:-1.410798629;BPTF:-1.42899775029;IKZF2:-1.43874904793;FOXN1:-1.46651772449 | |top_motifs=GTF2A1,2:1.47009036496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40157186282;HOX{A5,B5}:1.3246201563;HES1:1.13271695483;GZF1:1.10670746952;GFI1:1.09876734073;RXR{A,B,G}:1.08119249382;NR5A1,2:1.05694896832;ESR1:1.03251932829;RXRA_VDR{dimer}:1.00975409673;NR3C1:0.952693973839;GFI1B:0.888687090371;PPARG:0.852634440137;EN1,2:0.811735815227;PBX1:0.799718679969;IKZF1:0.798888195208;POU2F1..3:0.781396406569;ZBTB6:0.742519264136;PAX8:0.734093463209;ZNF238:0.711246695545;LHX3,4:0.689508337418;EBF1:0.671490387074;ZIC1..3:0.653486433891;ZNF423:0.645710858459;NR1H4:0.644779093797;XCPE1{core}:0.626999910307;TLX1..3_NFIC{dimer}:0.569050687092;TFAP4:0.550374039796;NFY{A,B,C}:0.520001547902;ZNF148:0.508462473345;E2F1..5:0.50136127248;LEF1_TCF7_TCF7L1,2:0.478382337823;SPZ1:0.470451952493;SRF:0.43891701439;TFCP2:0.435071789909;TFAP2{A,C}:0.395666072338;NFE2L1:0.393821118153;GLI1..3:0.392918495423;TOPORS:0.385641862986;ATF6:0.375284396222;TEAD1:0.364156450105;AR:0.357522390951;RREB1:0.346983709186;ZNF143:0.34034421915;BACH2:0.31444283396;KLF4:0.299926653076;ALX4:0.293412053537;UFEwm:0.293175978821;bHLH_family:0.292958585714;SOX17:0.284557452441;SOX{8,9,10}:0.280566181923;YY1:0.273275430057;TFDP1:0.268035803715;POU6F1:0.264783848833;TAL1_TCF{3,4,12}:0.260039570407;PAX5:0.257715399494;TP53:0.251297582209;CDC5L:0.250954689288;STAT5{A,B}:0.240582450603;NFE2L2:0.225380717804;HIC1:0.201150866627;ONECUT1,2:0.197238304219;HNF4A_NR2F1,2:0.194515106299;MZF1:0.189128127501;PDX1:0.157377019728;MTF1:0.155640261948;PAX3,7:0.146802392968;ESRRA:0.144390985022;NANOG:0.143273527127;MYB:0.132985223543;TBP:0.121105098202;TBX4,5:0.119525776059;ARID5B:0.115817608743;REST:0.100063759939;SP1:0.0962476801376;FOS_FOS{B,L1}_JUN{B,D}:0.0936925118437;GTF2I:0.092485956303;HOX{A6,A7,B6,B7}:0.0836719763225;HAND1,2:0.0798093020487;AIRE:0.0472406064835;NFE2:0.0470772254337;HOXA9_MEIS1:0.0209416113561;HNF1A:0.015171816638;FOSL2:-0.000729257561905;RUNX1..3:-0.0108214220758;ELK1,4_GABP{A,B1}:-0.0141962472576;NKX2-3_NKX2-5:-0.0141965716972;TFAP2B:-0.0304864317541;POU5F1:-0.0532971247221;RFX1:-0.0533707966432;FOXL1:-0.0660958013864;NR6A1:-0.0865846668755;HOX{A4,D4}:-0.0991083840505;NKX2-2,8:-0.115623451678;NFIX:-0.117404106873;PRRX1,2:-0.130413893135;EGR1..3:-0.130856892879;NRF1:-0.132967120841;HLF:-0.134434606167;FOXD3:-0.144072779716;MAFB:-0.164320242262;CRX:-0.176251160188;MYBL2:-0.176776099969;POU1F1:-0.183227170096;PAX1,9:-0.199548934877;POU3F1..4:-0.202702648917;STAT2,4,6:-0.218782645832;AHR_ARNT_ARNT2:-0.22164654644;MTE{core}:-0.234902393844;DMAP1_NCOR{1,2}_SMARC:-0.243444008815;MEF2{A,B,C,D}:-0.249431069864;PRDM1:-0.269511037876;PATZ1:-0.2769244617;NHLH1,2:-0.286582587906;NANOG{mouse}:-0.293280532822;HSF1,2:-0.303793667259;NFKB1_REL_RELA:-0.31990688852;XBP1:-0.323036746821;TEF:-0.323839645121;HBP1_HMGB_SSRP1_UBTF:-0.336511388745;OCT4_SOX2{dimer}:-0.340061161089;JUN:-0.358052706926;MED-1{core}:-0.36238404283;NFATC1..3:-0.366110727939;HMX1:-0.374294965889;BREu{core}:-0.391434403631;GATA6:-0.417063749108;CUX2:-0.422112457958;SOX5:-0.423394959728;MAZ:-0.425152013681;ETS1,2:-0.458086096294;FOX{I1,J2}:-0.474558089346;SPIB:-0.478917715657;EVI1:-0.487394742679;ZFP161:-0.495077897812;LMO2:-0.495511288787;SPI1:-0.51095237173;CEBPA,B_DDIT3:-0.512751162925;PAX4:-0.524250747194;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548428456624;SMAD1..7,9:-0.562622556135;MYOD1:-0.564130624468;ELF1,2,4:-0.58207920792;GATA4:-0.586059047207;SOX2:-0.590608995495;CREB1:-0.594370485372;RFX2..5_RFXANK_RFXAP:-0.606171534148;SNAI1..3:-0.63394630443;NFIL3:-0.644891787577;NKX6-1,2:-0.653803103074;PITX1..3:-0.674558008402;NKX3-1:-0.682598805896;FOXM1:-0.701492791979;T:-0.70297640379;RORA:-0.708211284746;MYFfamily:-0.714813744028;ADNP_IRX_SIX_ZHX:-0.730206029896;VSX1,2:-0.738059676682;FOXA2:-0.785527629654;GCM1,2:-0.826455387851;ZEB1:-0.834005086635;ALX1:-0.837273920814;NKX3-2:-0.849834313293;ATF5_CREB3:-0.864291678885;FOXQ1:-0.872122390963;PAX2:-0.881066203508;ZNF384:-0.90417039246;FOXP3:-0.915583029024;ZBTB16:-0.920749470644;TGIF1:-0.932967060494;ATF2:-0.939017536987;PAX6:-0.949597990205;FOXP1:-0.989754670914;FOX{F1,F2,J1}:-1.01848912514;DBP:-1.03809536984;IRF1,2:-1.03836776701;EP300:-1.04577367661;STAT1,3:-1.04650803446;HIF1A:-1.05465593001;NKX2-1,4:-1.1090779406;SREBF1,2:-1.11857241432;ATF4:-1.12619886271;RBPJ:-1.13715208168;FOX{D1,D2}:-1.15860506634;TLX2:-1.19811215038;FOXO1,3,4:-1.21243257987;CDX1,2,4:-1.29421394513;IRF7:-1.31832138559;HMGA1,2:-1.410798629;BPTF:-1.42899775029;IKZF2:-1.43874904793;FOXN1:-1.46651772449 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11697-123A5;search_select_hide=table117:FF:11697-123A5 | |||
}} | }} | ||
Latest revision as of 18:15, 4 June 2020
| Name: | Mesenchymal Stem Cells - bone marrow, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12126 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12126
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12126
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.76 |
| 10 | 10 | 0.883 |
| 100 | 100 | 0.558 |
| 101 | 101 | 0.0588 |
| 102 | 102 | 0.608 |
| 103 | 103 | 0.65 |
| 104 | 104 | 0.228 |
| 105 | 105 | 0.539 |
| 106 | 106 | 0.628 |
| 107 | 107 | 0.202 |
| 108 | 108 | 0.877 |
| 109 | 109 | 0.00678 |
| 11 | 11 | 0.0594 |
| 110 | 110 | 0.0421 |
| 111 | 111 | 0.761 |
| 112 | 112 | 0.782 |
| 113 | 113 | 0.448 |
| 114 | 114 | 0.964 |
| 115 | 115 | 0.298 |
| 116 | 116 | 0.0342 |
| 117 | 117 | 0.211 |
| 118 | 118 | 0.727 |
| 119 | 119 | 0.66 |
| 12 | 12 | 0.6 |
| 120 | 120 | 0.167 |
| 121 | 121 | 0.541 |
| 122 | 122 | 0.767 |
| 123 | 123 | 0.00202 |
| 124 | 124 | 0.251 |
| 125 | 125 | 0.586 |
| 126 | 126 | 0.649 |
| 127 | 127 | 0.453 |
| 128 | 128 | 0.929 |
| 129 | 129 | 0.535 |
| 13 | 13 | 0.587 |
| 130 | 130 | 0.0381 |
| 131 | 131 | 0.629 |
| 132 | 132 | 0.217 |
| 133 | 133 | 0.472 |
| 134 | 134 | 0.276 |
| 135 | 135 | 0.544 |
| 136 | 136 | 0.718 |
| 137 | 137 | 0.0126 |
| 138 | 138 | 0.0743 |
| 139 | 139 | 0.3 |
| 14 | 14 | 0.973 |
| 140 | 140 | 0.541 |
| 141 | 141 | 0.209 |
| 142 | 142 | 0.104 |
| 143 | 143 | 0.285 |
| 144 | 144 | 0.764 |
| 145 | 145 | 0.441 |
| 146 | 146 | 0.147 |
| 147 | 147 | 0.266 |
| 148 | 148 | 0.174 |
| 149 | 149 | 0.472 |
| 15 | 15 | 0.784 |
| 150 | 150 | 0.338 |
| 151 | 151 | 0.705 |
| 152 | 152 | 0.146 |
| 153 | 153 | 0.102 |
| 154 | 154 | 0.372 |
| 155 | 155 | 0.826 |
| 156 | 156 | 0.959 |
| 157 | 157 | 0.632 |
| 158 | 158 | 0.053 |
| 159 | 159 | 0.752 |
| 16 | 16 | 0.224 |
| 160 | 160 | 0.017 |
| 161 | 161 | 0.524 |
| 162 | 162 | 0.317 |
| 163 | 163 | 0.45 |
| 164 | 164 | 0.677 |
| 165 | 165 | 0.191 |
| 166 | 166 | 0.964 |
| 167 | 167 | 0.447 |
| 168 | 168 | 0.277 |
| 169 | 169 | 0.0773 |
| 17 | 17 | 0.336 |
| 18 | 18 | 0.551 |
| 19 | 19 | 0.0514 |
| 2 | 2 | 0.45 |
| 20 | 20 | 0.968 |
| 21 | 21 | 0.72 |
| 22 | 22 | 0.0797 |
| 23 | 23 | 0.876 |
| 24 | 24 | 0.451 |
| 25 | 25 | 0.846 |
| 26 | 26 | 0.0207 |
| 27 | 27 | 0.372 |
| 28 | 28 | 0.0445 |
| 29 | 29 | 0.353 |
| 3 | 3 | 0.48 |
| 30 | 30 | 0.349 |
| 31 | 31 | 0.564 |
| 32 | 32 | 3.92818e-6 |
| 33 | 33 | 0.42 |
| 34 | 34 | 0.303 |
| 35 | 35 | 0.524 |
| 36 | 36 | 0.777 |
| 37 | 37 | 0.158 |
| 38 | 38 | 0.457 |
| 39 | 39 | 0.624 |
| 4 | 4 | 0.581 |
| 40 | 40 | 0.0718 |
| 41 | 41 | 0.318 |
| 42 | 42 | 0.705 |
| 43 | 43 | 0.298 |
| 44 | 44 | 0.991 |
| 45 | 45 | 0.401 |
| 46 | 46 | 0.117 |
| 47 | 47 | 0.187 |
| 48 | 48 | 0.181 |
| 49 | 49 | 0.479 |
| 5 | 5 | 0.361 |
| 50 | 50 | 0.192 |
| 51 | 51 | 0.527 |
| 52 | 52 | 0.563 |
| 53 | 53 | 0.242 |
| 54 | 54 | 0.788 |
| 55 | 55 | 0.765 |
| 56 | 56 | 0.2 |
| 57 | 57 | 0.399 |
| 58 | 58 | 0.351 |
| 59 | 59 | 0.012 |
| 6 | 6 | 0.546 |
| 60 | 60 | 0.836 |
| 61 | 61 | 0.639 |
| 62 | 62 | 0.49 |
| 63 | 63 | 0.237 |
| 64 | 64 | 0.325 |
| 65 | 65 | 0.123 |
| 66 | 66 | 0.0515 |
| 67 | 67 | 0.757 |
| 68 | 68 | 0.0434 |
| 69 | 69 | 0.0475 |
| 7 | 7 | 0.922 |
| 70 | 70 | 0.766 |
| 71 | 71 | 0.165 |
| 72 | 72 | 0.491 |
| 73 | 73 | 0.0263 |
| 74 | 74 | 0.413 |
| 75 | 75 | 0.336 |
| 76 | 76 | 0.483 |
| 77 | 77 | 0.082 |
| 78 | 78 | 0.425 |
| 79 | 79 | 0.253 |
| 8 | 8 | 0.0292 |
| 80 | 80 | 0.461 |
| 81 | 81 | 0.918 |
| 82 | 82 | 0.774 |
| 83 | 83 | 0.394 |
| 84 | 84 | 0.499 |
| 85 | 85 | 0.473 |
| 86 | 86 | 0.909 |
| 87 | 87 | 0.0686 |
| 88 | 88 | 0.415 |
| 89 | 89 | 0.257 |
| 9 | 9 | 0.385 |
| 90 | 90 | 0.091 |
| 91 | 91 | 0.485 |
| 92 | 92 | 0.858 |
| 93 | 93 | 0.888 |
| 94 | 94 | 0.98 |
| 95 | 95 | 0.0457 |
| 96 | 96 | 0.979 |
| 97 | 97 | 0.691 |
| 98 | 98 | 0.391 |
| 99 | 99 | 3.35404e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12126
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000097 human mesenchymal stem cell of bone marrow sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
