FF:11840-124H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005575 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008550;DRR009422;DRZ000847;DRZ002232;DRZ012197;DRZ013582 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000269 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11840-124H4 | |id=FF:11840-124H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000269 | ||
|is_obsolete= | |||
|library_id=CNhs13098 | |||
|library_id_phase_based=2:CNhs13098 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11840 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11840 | |||
|name=mesenchymal precursor cell - bone marrow, donor3 | |name=mesenchymal precursor cell - bone marrow, donor3 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13098,LSID1001,release013,COMPLETED | |profile_hcage=CNhs13098,LSID1001,release013,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.443985809596691,0,0.283667779510305,0,0.23862928976361,0.0777985559604955,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.346027913328634,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0114560361087226,0,0.276418423478184,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.443985809596691,-0.0969923612426051,0,0,0.179074796265087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0293788003938041,0.138209211739092,0,0,-0.170609873869451,0.0107955021024769,0,0,0,0.276418423478184,0.178383072240477,0.22968343909003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185925926591039,0,0,0,0.10870151658168,0.111252300010128,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.178383072240477,0,0.276418423478184,0,0,0.276418423478184,0,0.276418423478184,0,0,0,0,0.0292395481926193,0,-0.474086218752008,-0.143515142523472,0,0,0.24945144184727,0,0,0,0,0,0,0,0,0,0.530773052722512,0,0.393573258007376,0,0.276418423478184,0.251320645699523,0,0,0.353420688776669,0,0.255271395216608,-0.0683442610773682,0,0,0,0,0.466796475137672,0,0.44371955723326,0.193698255154766,-0.221611588102807,-0.162669155731808,-0.055712496781182,0,0,0,-0.104301578956449,0.275779353931519,0,0,0.016429359987218,0.322942806751187,0,0,1.33729996308355,0,0.131565771964167,0.190173322379701,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895020343710265,-0.0505701732007852,0,0,0,0,-0.19407560401235,0,0,0.536189091960423,-0.0183509795614272,0,-0.480209371050109,0,0.262209314017088,-0.0117768239782158,-0.813090302478688,-0.141752028954849,0.296583960225553,-0.189981719549847,0,-0.0293788003938041,0.0157390331115663,-0.0147696981165713,-0.123183132081451,-0.0330998116404527,0.451277922570965,-0.334260158418814,0,0,0.0305085519033579,-0.200544746210428,0,-0.056788619318201,0.168778205198303,-0.27304297814453,-0.216249812517217,-0.174727772028816,-0.15022238619444,0.198128349391052,0.528206139648538,0.278884826885256,0,0.11210697660238,0,0,-0.111743038289117,0.091081217721487,0.0160995551182557,-0.171840363581988,0,-0.0399916522142894,-0.0683442610773682,0,0.0035476897107155,-0.0763749926366539,0,0.00685269395520516,-0.014178189844411,0,0,0,0,0.564599041027001,-0.139472972845675,-0.263073719551983,-0.232855561555545,0,-0.0461633551852867,0.007764964018382,-0.297286080352587,0,-0.185051753723049,0.0742476618673782,-0.0216557288831086,0.151352005000455,0,0.0408489962115415,-0.132062827921112,-0.0812190739558117,0.0215910042049538,-0.0584468268118252,0.00584934600611942,-0.264394842153634,-0.170609873869451,0.485130757183541,-0.122290338456074,-0.0881268324752877,0,-0.224651830843303,-0.235512322024833,-0.0994392287853636,0.128299072650046,0,0.219423466675828,0,-0.346735844817096,0,-0.221073210991794,-0.264015327995056,-0.439289374580686,-0.000775843587671909,0,-0.568171254613872,-0.344145128177283,0,-0.0367191416065134,0,0,0.585954196447211,0.038625313269268,-0.0734412161254972,-0.138989456679195,0,0.309170321006565,0,0,0.416810520829952,0.208509771832303,0,0.380170808411034,0.0496900054616806,0.305259206721696,0.328014736161757,0.443985809596691,0,-0.0811012969657238,0,0,0.196083598407548,0,-0.619783323958633,0.190659468109936,0,0.0295864022848363,0,0,0.098890657513008,0,0.093357790234591,0,0,-0.249881296598824,0,0,0,0.443985809596691,0.0495629254731805,0,0,0,0,0,0,0,0.0730179153722286,-0.354833330216448,0,-0.13011492596411,0,0,0,0,0,0,0,0,0.798070934390775,-0.0807864576851235,0.153401007801763,0,0,0,0,0.0606950209247091,-0.203236562094724,0.276418423478184,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0.138209211739092,0,0.386255352543027,0.767551851052011,0,0,0,0.45936687818006,0,0,0.276418423478184,0,0.133542336673448,0,0,0.118195063558837,0,-0.115845564283815,-0.0815818795468414,0,-0.166614831719811,-0.00277963753480304,0.146504909213238,0,0,-0.261347131789888,0,0,-0.0030064660513538,0,0,0.0908490393282915,0,0,0,0,0,0,0.229671297196936,0,0,0,0,0,0,0,0,0,0,0,0.141277546159171,0.351761752938181,0,0,0,0,0,0,0,0.114103188660189,-0.103995013934919,0,0,0,0,0,0,0,0,-0.195007516185058,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.120821311557193,0,0,-0.000943708715330283,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153099337442736,0.23862928976361,0,0,0,0,0,0,0,0.384059621468986,0,0.276418423478184,0,0,1.81370285053808,0,0,0,0.171622038689027,0,0.283667779510305,0.443985809596691,0,0.443985809596691,0,0,0.348026402223104,0.138209211739092,0,0,0,0,0,0,0,0,0,0,0.329446459837539,0.401005831112789,0,0,0.657944065271054,0,0.125924990177905,0.0486489306311444,0,0,0.0496711678804588,0,0,0,0,0,0,0.106868787710565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0.276418423478184,0,0,0.346027913328634,0,0,-0.0920328098005262,0,0,0,0,0,0,0.179678830919921,0.255994643028733,-0.0678910154917335,0,0,0.564599041027001,0.167607332315891,0,0,0,0.443985809596691,0.592115532256175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276418423478184,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.523235050124807,0,0,0,0,0,0,0,0,0.276418423478184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330892412831456,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108388877159364,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.443985809596691,0.0490109667080217,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310988432738496,0,0,-0.096035573924609,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.03293785558189,0,0,0,0,0,0,0,0.276418423478184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0997721131894415,0.11125230001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| |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10.12725 | |rna_weight_ug=10.12725 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.6436462585624e-224!GO:0005737;cytoplasm;2.84668569309797e-186!GO:0044444;cytoplasmic part;1.69660986020961e-145!GO:0043226;organelle;6.37377688672906e-140!GO:0043229;intracellular organelle;1.23843535009089e-139!GO:0043231;intracellular membrane-bound organelle;2.19212669906934e-136!GO:0043227;membrane-bound organelle;4.00640871398813e-136!GO:0044422;organelle part;1.35702860591616e-112!GO:0044446;intracellular organelle part;3.31330764963752e-111!GO:0032991;macromolecular complex;9.7881417187573e-80!GO:0030529;ribonucleoprotein complex;4.7995117866148e-68!GO:0005515;protein binding;3.98470218273695e-64!GO:0044237;cellular metabolic process;1.52025727417864e-62!GO:0005739;mitochondrion;2.83245054490362e-62!GO:0044238;primary metabolic process;9.07043058604776e-61!GO:0043233;organelle lumen;2.556510012434e-58!GO:0031974;membrane-enclosed lumen;2.556510012434e-58!GO:0003723;RNA binding;8.14520548853912e-55!GO:0043170;macromolecule metabolic process;2.6404340817335e-54!GO:0031090;organelle membrane;1.5561367902377e-51!GO:0044428;nuclear part;5.33521172661998e-48!GO:0005840;ribosome;2.41372318385469e-45!GO:0019538;protein metabolic process;4.74788998632348e-45!GO:0043234;protein complex;5.61417219512905e-41!GO:0006412;translation;8.34186306559603e-41!GO:0044260;cellular macromolecule metabolic process;2.55050617232611e-40!GO:0044429;mitochondrial part;2.91186313835407e-40!GO:0015031;protein transport;6.35475476803542e-40!GO:0003735;structural constituent of ribosome;7.73552837786815e-40!GO:0033036;macromolecule localization;2.03877088050481e-39!GO:0044267;cellular protein metabolic process;6.68410986522329e-39!GO:0045184;establishment of protein localization;5.44491306656215e-38!GO:0008104;protein localization;2.25164916451136e-37!GO:0009058;biosynthetic process;2.52819672582159e-37!GO:0005829;cytosol;2.81450226111508e-37!GO:0016043;cellular component organization and biogenesis;1.98661688386285e-36!GO:0033279;ribosomal subunit;4.44404298177047e-36!GO:0009059;macromolecule biosynthetic process;9.08573774381924e-36!GO:0006396;RNA processing;1.33281361072984e-34!GO:0005634;nucleus;7.05346600482578e-34!GO:0044249;cellular biosynthetic process;2.96533402361439e-32!GO:0031967;organelle envelope;7.99994412429197e-32!GO:0031975;envelope;1.2627906648952e-31!GO:0031981;nuclear lumen;2.19475277289993e-30!GO:0046907;intracellular transport;3.79566966560356e-30!GO:0016071;mRNA metabolic process;1.09141824352183e-28!GO:0008380;RNA splicing;6.50632499841179e-27!GO:0006886;intracellular protein transport;1.70508338597147e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.73837742764719e-26!GO:0005740;mitochondrial envelope;1.34008927364273e-25!GO:0006397;mRNA processing;1.76348268693099e-24!GO:0031966;mitochondrial membrane;2.19950219196344e-24!GO:0065003;macromolecular complex assembly;2.72468294034819e-24!GO:0005783;endoplasmic reticulum;3.85270377882249e-24!GO:0019866;organelle inner membrane;6.70325045975709e-24!GO:0005743;mitochondrial inner membrane;7.99524919275457e-23!GO:0022607;cellular component assembly;3.5336126107424e-22!GO:0006119;oxidative phosphorylation;7.4517585953437e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.60025974129473e-21!GO:0010467;gene expression;1.61284480004226e-21!GO:0043283;biopolymer metabolic process;2.96733754305872e-21!GO:0012505;endomembrane system;7.03087814089873e-21!GO:0006457;protein folding;1.24808955805115e-20!GO:0044445;cytosolic part;1.33974577664377e-20!GO:0044432;endoplasmic reticulum part;1.20482468240443e-19!GO:0043228;non-membrane-bound organelle;1.6847088902455e-19!GO:0043232;intracellular non-membrane-bound organelle;1.6847088902455e-19!GO:0015934;large ribosomal subunit;2.50417735912449e-19!GO:0048770;pigment granule;4.69140122605413e-19!GO:0042470;melanosome;4.69140122605413e-19!GO:0044455;mitochondrial membrane part;4.72009156153888e-19!GO:0051649;establishment of cellular localization;7.82031209575468e-19!GO:0051641;cellular localization;9.92446425179005e-19!GO:0005654;nucleoplasm;1.20209432056088e-18!GO:0005681;spliceosome;3.70034142922702e-18!GO:0031980;mitochondrial lumen;9.56881266471675e-18!GO:0005759;mitochondrial matrix;9.56881266471675e-18!GO:0015935;small ribosomal subunit;1.0178472612792e-17!GO:0005794;Golgi apparatus;1.34447055246603e-17!GO:0006996;organelle organization and biogenesis;2.045510675317e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.51990614914503e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.78695588688152e-17!GO:0016462;pyrophosphatase activity;5.39842654058655e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.03943818689178e-17!GO:0051186;cofactor metabolic process;8.65308840943748e-17!GO:0005746;mitochondrial respiratory chain;2.95696093669737e-16!GO:0017111;nucleoside-triphosphatase activity;3.77051052300279e-16!GO:0044265;cellular macromolecule catabolic process;6.44982734415647e-16!GO:0044451;nucleoplasm part;7.23863968892693e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.10128513298671e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.53306525394916e-15!GO:0022618;protein-RNA complex assembly;1.16831428208547e-14!GO:0006512;ubiquitin cycle;1.83122905873596e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.18645990632314e-14!GO:0003954;NADH dehydrogenase activity;2.18645990632314e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.18645990632314e-14!GO:0044248;cellular catabolic process;3.4505319923986e-14!GO:0008134;transcription factor binding;4.29992562479268e-14!GO:0043285;biopolymer catabolic process;4.56122732621403e-14!GO:0009057;macromolecule catabolic process;7.43468044951158e-14!GO:0016874;ligase activity;8.13854859284704e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;8.59028057619712e-14!GO:0006605;protein targeting;9.26119954473695e-14!GO:0048193;Golgi vesicle transport;1.06748992945422e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.6833098705035e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.70800567582318e-13!GO:0019941;modification-dependent protein catabolic process;1.81238441579359e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.81238441579359e-13!GO:0044257;cellular protein catabolic process;1.89516714753897e-13!GO:0005761;mitochondrial ribosome;2.23767818608062e-13!GO:0000313;organellar ribosome;2.23767818608062e-13!GO:0000166;nucleotide binding;3.58494090143808e-13!GO:0005789;endoplasmic reticulum membrane;3.87673283984617e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.19522312987464e-13!GO:0005730;nucleolus;5.24633928190998e-13!GO:0051082;unfolded protein binding;6.23954419084102e-13!GO:0016192;vesicle-mediated transport;8.4591091727705e-13!GO:0005793;ER-Golgi intermediate compartment;1.01499909587826e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.05656155013008e-12!GO:0045271;respiratory chain complex I;1.05656155013008e-12!GO:0005747;mitochondrial respiratory chain complex I;1.05656155013008e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.10206800353763e-12!GO:0006732;coenzyme metabolic process;1.16512502748573e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.28839923053426e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.76472718494655e-12!GO:0042773;ATP synthesis coupled electron transport;1.76472718494655e-12!GO:0008135;translation factor activity, nucleic acid binding;2.33398462083945e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.44406386924869e-12!GO:0030163;protein catabolic process;4.29012793519663e-12!GO:0016491;oxidoreductase activity;1.28190000369796e-10!GO:0006259;DNA metabolic process;2.22120577207463e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.28991938274602e-10!GO:0012501;programmed cell death;3.77877956388418e-10!GO:0006915;apoptosis;5.11141239839846e-10!GO:0006163;purine nucleotide metabolic process;5.50720342672903e-10!GO:0009150;purine ribonucleotide metabolic process;6.40883915550594e-10!GO:0009259;ribonucleotide metabolic process;6.45442994589841e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.41552319002858e-10!GO:0000375;RNA splicing, via transesterification reactions;7.41552319002858e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.41552319002858e-10!GO:0009055;electron carrier activity;8.60915153350477e-10!GO:0003743;translation initiation factor activity;8.71420754858671e-10!GO:0006413;translational initiation;1.68869693402522e-09!GO:0005773;vacuole;1.95071671626125e-09!GO:0008219;cell death;1.97493971742066e-09!GO:0016265;death;1.97493971742066e-09!GO:0009141;nucleoside triphosphate metabolic process;2.36597628987419e-09!GO:0017076;purine nucleotide binding;2.36597628987419e-09!GO:0005788;endoplasmic reticulum lumen;2.83372251732686e-09!GO:0043412;biopolymer modification;3.23407958976346e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.36344972866985e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.36344972866985e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.46091676822154e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.55172052241736e-09!GO:0032553;ribonucleotide binding;4.87909226133278e-09!GO:0032555;purine ribonucleotide binding;4.87909226133278e-09!GO:0006164;purine nucleotide biosynthetic process;5.62973549416574e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.52762881510636e-09!GO:0016604;nuclear body;7.16851926116818e-09!GO:0005768;endosome;7.45241353589701e-09!GO:0006446;regulation of translational initiation;8.91178398274978e-09!GO:0015986;ATP synthesis coupled proton transport;1.06111485697489e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.06111485697489e-08!GO:0048523;negative regulation of cellular process;1.4157965810972e-08!GO:0009056;catabolic process;1.4157965810972e-08!GO:0019829;cation-transporting ATPase activity;1.68012049415812e-08!GO:0046034;ATP metabolic process;1.68012049415812e-08!GO:0009260;ribonucleotide biosynthetic process;1.68138461654362e-08!GO:0003712;transcription cofactor activity;1.83626635570953e-08!GO:0000323;lytic vacuole;2.0113562772742e-08!GO:0005764;lysosome;2.0113562772742e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.12521304314131e-08!GO:0003676;nucleic acid binding;2.13679251706756e-08!GO:0044431;Golgi apparatus part;2.61261789388357e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.12563094297763e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.12563094297763e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.35623871246881e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.35623871246881e-08!GO:0008639;small protein conjugating enzyme activity;3.67552270233668e-08!GO:0006091;generation of precursor metabolites and energy;3.9306903732287e-08!GO:0006464;protein modification process;3.98111522140269e-08!GO:0051188;cofactor biosynthetic process;4.21187504626875e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.63069663718895e-08!GO:0003924;GTPase activity;4.66709082031838e-08!GO:0006913;nucleocytoplasmic transport;4.66709082031838e-08!GO:0009060;aerobic respiration;5.04026406855803e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.43822199681892e-08!GO:0008565;protein transporter activity;6.5972914564742e-08!GO:0004842;ubiquitin-protein ligase activity;6.63782143640349e-08!GO:0019787;small conjugating protein ligase activity;7.28819203008512e-08!GO:0051169;nuclear transport;8.80476162966326e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.49072724236746e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.50306160910507e-08!GO:0016887;ATPase activity;1.0124557480587e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.03600111832869e-07!GO:0030120;vesicle coat;1.03600111832869e-07!GO:0030662;coated vesicle membrane;1.03600111832869e-07!GO:0042254;ribosome biogenesis and assembly;1.0750487183888e-07!GO:0045333;cellular respiration;1.09666075150444e-07!GO:0017038;protein import;1.17105401550582e-07!GO:0031965;nuclear membrane;1.18479693443937e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.24865244522698e-07!GO:0006754;ATP biosynthetic process;1.32110659406161e-07!GO:0006753;nucleoside phosphate metabolic process;1.32110659406161e-07!GO:0005635;nuclear envelope;1.62000631161223e-07!GO:0042623;ATPase activity, coupled;1.88108182284595e-07!GO:0044440;endosomal part;1.91026398861371e-07!GO:0010008;endosome membrane;1.91026398861371e-07!GO:0006461;protein complex assembly;1.98420027048315e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.52245043386513e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.38272587422246e-07!GO:0016607;nuclear speck;3.49629901579121e-07!GO:0048519;negative regulation of biological process;3.76525357479351e-07!GO:0016881;acid-amino acid ligase activity;4.17229118332368e-07!GO:0042981;regulation of apoptosis;5.4088623862966e-07!GO:0043067;regulation of programmed cell death;7.45961655155037e-07!GO:0048475;coated membrane;8.42634435510018e-07!GO:0030117;membrane coat;8.42634435510018e-07!GO:0004298;threonine endopeptidase activity;8.86029601543767e-07!GO:0009117;nucleotide metabolic process;9.11534032100995e-07!GO:0016070;RNA metabolic process;9.95063233650993e-07!GO:0004386;helicase activity;1.33294483192462e-06!GO:0031988;membrane-bound vesicle;1.38285475500169e-06!GO:0006099;tricarboxylic acid cycle;1.39378352045822e-06!GO:0046356;acetyl-CoA catabolic process;1.39378352045822e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.43764423101455e-06!GO:0000139;Golgi membrane;1.46238361822215e-06!GO:0007049;cell cycle;1.52005809570918e-06!GO:0051187;cofactor catabolic process;1.52005809570918e-06!GO:0005524;ATP binding;1.83650916526428e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.91483772202312e-06!GO:0043069;negative regulation of programmed cell death;1.93748683369658e-06!GO:0006974;response to DNA damage stimulus;1.95766712050675e-06!GO:0030554;adenyl nucleotide binding;1.95766712050675e-06!GO:0009108;coenzyme biosynthetic process;2.21108833998971e-06!GO:0043066;negative regulation of apoptosis;2.21108833998971e-06!GO:0044453;nuclear membrane part;2.36328334373351e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.37618160893064e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.37618160893064e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.37618160893064e-06!GO:0031252;leading edge;2.41324381819217e-06!GO:0051789;response to protein stimulus;2.42728754281138e-06!GO:0006986;response to unfolded protein;2.42728754281138e-06!GO:0006366;transcription from RNA polymerase II promoter;2.57183017908263e-06!GO:0032559;adenyl ribonucleotide binding;3.1558238240637e-06!GO:0009109;coenzyme catabolic process;3.30744015540168e-06!GO:0043038;amino acid activation;3.37858055884792e-06!GO:0006418;tRNA aminoacylation for protein translation;3.37858055884792e-06!GO:0043039;tRNA aminoacylation;3.37858055884792e-06!GO:0005770;late endosome;3.4671899269278e-06!GO:0051246;regulation of protein metabolic process;3.98679805730346e-06!GO:0043687;post-translational protein modification;4.14631663756106e-06!GO:0045259;proton-transporting ATP synthase complex;4.47850425601513e-06!GO:0008026;ATP-dependent helicase activity;4.48927362965164e-06!GO:0006084;acetyl-CoA metabolic process;4.65694156158646e-06!GO:0006399;tRNA metabolic process;4.67850563315826e-06!GO:0031982;vesicle;5.26887817216274e-06!GO:0006916;anti-apoptosis;5.26887817216274e-06!GO:0016787;hydrolase activity;5.28491072069096e-06!GO:0043566;structure-specific DNA binding;6.23425048067992e-06!GO:0031410;cytoplasmic vesicle;6.23425048067992e-06!GO:0065002;intracellular protein transport across a membrane;6.4398117795018e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.66834484377276e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.55971132233039e-06!GO:0016859;cis-trans isomerase activity;8.33812566286768e-06!GO:0008361;regulation of cell size;1.01235841400665e-05!GO:0044262;cellular carbohydrate metabolic process;1.02989826467342e-05!GO:0000074;regulation of progression through cell cycle;1.15066473596223e-05!GO:0006752;group transfer coenzyme metabolic process;1.16313385050303e-05!GO:0051726;regulation of cell cycle;1.22881387802983e-05!GO:0016049;cell growth;1.24343560961441e-05!GO:0008654;phospholipid biosynthetic process;1.35874453352183e-05!GO:0016853;isomerase activity;1.51627295015884e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.52206708430548e-05!GO:0005762;mitochondrial large ribosomal subunit;1.52421093115026e-05!GO:0000315;organellar large ribosomal subunit;1.52421093115026e-05!GO:0007005;mitochondrion organization and biogenesis;1.60089688059303e-05!GO:0045786;negative regulation of progression through cell cycle;1.61117073719573e-05!GO:0051170;nuclear import;1.87791872977383e-05!GO:0005525;GTP binding;2.06604162963853e-05!GO:0065004;protein-DNA complex assembly;2.12268516289403e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.43797301481841e-05!GO:0006613;cotranslational protein targeting to membrane;2.51484791205293e-05!GO:0001558;regulation of cell growth;2.54170827573043e-05!GO:0003697;single-stranded DNA binding;2.86006706034406e-05!GO:0006606;protein import into nucleus;3.2268918767333e-05!GO:0030133;transport vesicle;3.57623162891637e-05!GO:0000245;spliceosome assembly;3.89062418175809e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.55050484240984e-05!GO:0030029;actin filament-based process;5.2007709368071e-05!GO:0005798;Golgi-associated vesicle;6.00711898905519e-05!GO:0005643;nuclear pore;6.44594785610352e-05!GO:0007243;protein kinase cascade;6.52292828874718e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;7.70712008257365e-05!GO:0030867;rough endoplasmic reticulum membrane;8.06276093963222e-05!GO:0022402;cell cycle process;0.000103103953386527!GO:0005667;transcription factor complex;0.000115150681507054!GO:0033116;ER-Golgi intermediate compartment membrane;0.000117369642727339!GO:0032561;guanyl ribonucleotide binding;0.000130293614445459!GO:0019001;guanyl nucleotide binding;0.000130293614445459!GO:0006364;rRNA processing;0.000130418908084436!GO:0048522;positive regulation of cellular process;0.000137754589752362!GO:0006281;DNA repair;0.000141490813775393!GO:0003714;transcription corepressor activity;0.000149914921252084!GO:0016072;rRNA metabolic process;0.000155035238692463!GO:0032446;protein modification by small protein conjugation;0.000163676505485595!GO:0006323;DNA packaging;0.000167959528149384!GO:0009719;response to endogenous stimulus;0.000182622046403841!GO:0000151;ubiquitin ligase complex;0.00020011088096984!GO:0005769;early endosome;0.00020252202799048!GO:0016567;protein ubiquitination;0.000213813072334773!GO:0003713;transcription coactivator activity;0.00021391037753411!GO:0016563;transcription activator activity;0.000232395382078903!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000240825143624953!GO:0019867;outer membrane;0.000242706345428708!GO:0003724;RNA helicase activity;0.000262448942834198!GO:0045454;cell redox homeostasis;0.000267442780779034!GO:0046474;glycerophospholipid biosynthetic process;0.000292182088560794!GO:0031324;negative regulation of cellular metabolic process;0.000312179620325631!GO:0008250;oligosaccharyl transferase complex;0.000312179620325631!GO:0046930;pore complex;0.000312179620325631!GO:0006612;protein targeting to membrane;0.000319883786432084!GO:0005905;coated pit;0.000352224205909034!GO:0000314;organellar small ribosomal subunit;0.00035892653683225!GO:0005763;mitochondrial small ribosomal subunit;0.00035892653683225!GO:0051427;hormone receptor binding;0.000367669222212658!GO:0004576;oligosaccharyl transferase activity;0.000382802386794227!GO:0031968;organelle outer membrane;0.000385674531309673!GO:0001726;ruffle;0.000414324442249638!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000445066983697389!GO:0030663;COPI coated vesicle membrane;0.000445066983697389!GO:0030126;COPI vesicle coat;0.000445066983697389!GO:0005048;signal sequence binding;0.000446260720751067!GO:0005791;rough endoplasmic reticulum;0.000447975546814669!GO:0016564;transcription repressor activity;0.000523025137163575!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000539884468851113!GO:0016740;transferase activity;0.000565233888667126!GO:0043021;ribonucleoprotein binding;0.000566828217711576!GO:0022890;inorganic cation transmembrane transporter activity;0.000604010185959609!GO:0016779;nucleotidyltransferase activity;0.000621395879016375!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000653939092119027!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000662530946846999!GO:0035257;nuclear hormone receptor binding;0.000708064522694883!GO:0006333;chromatin assembly or disassembly;0.000710444864721806!GO:0005885;Arp2/3 protein complex;0.000745736750788517!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000750411769308667!GO:0015399;primary active transmembrane transporter activity;0.000750411769308667!GO:0006950;response to stress;0.000752048673535587!GO:0006979;response to oxidative stress;0.000752048673535587!GO:0006403;RNA localization;0.000783226163773549!GO:0018196;peptidyl-asparagine modification;0.000826323003398777!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000826323003398777!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000862136300116719!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000869274144462444!GO:0005741;mitochondrial outer membrane;0.000869920506887751!GO:0050657;nucleic acid transport;0.000875281016015966!GO:0051236;establishment of RNA localization;0.000875281016015966!GO:0050658;RNA transport;0.000875281016015966!GO:0016044;membrane organization and biogenesis;0.000879894199656397!GO:0050794;regulation of cellular process;0.000882731214961577!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000882731214961577!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000956387192435807!GO:0009892;negative regulation of metabolic process;0.000983726448603013!GO:0051920;peroxiredoxin activity;0.00100137199962496!GO:0008092;cytoskeletal protein binding;0.0010299017524711!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0010801388582402!GO:0019843;rRNA binding;0.00120820251499208!GO:0006891;intra-Golgi vesicle-mediated transport;0.00120820251499208!GO:0065009;regulation of a molecular function;0.00146414129921714!GO:0005774;vacuolar membrane;0.00149935085075352!GO:0046489;phosphoinositide biosynthetic process;0.00153630399028668!GO:0006334;nucleosome assembly;0.00155285850319269!GO:0009165;nucleotide biosynthetic process;0.00159242978346326!GO:0006118;electron transport;0.00171367224431611!GO:0040008;regulation of growth;0.00191273617181824!GO:0048518;positive regulation of biological process;0.00192955385119342!GO:0000278;mitotic cell cycle;0.00195910380656946!GO:0030137;COPI-coated vesicle;0.00195910380656946!GO:0003690;double-stranded DNA binding;0.00205982875841409!GO:0006818;hydrogen transport;0.00217580057496484!GO:0043681;protein import into mitochondrion;0.00218097017096572!GO:0030027;lamellipodium;0.00218097017096572!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00219908931295983!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00219908931295983!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00219908931295983!GO:0015992;proton transport;0.00224974547296775!GO:0030132;clathrin coat of coated pit;0.00238156957689463!GO:0008186;RNA-dependent ATPase activity;0.00238156957689463!GO:0016197;endosome transport;0.0024440009399164!GO:0051276;chromosome organization and biogenesis;0.00246241381344789!GO:0031902;late endosome membrane;0.00257272105336727!GO:0006793;phosphorus metabolic process;0.002629393029615!GO:0006796;phosphate metabolic process;0.002629393029615!GO:0009967;positive regulation of signal transduction;0.002669198980554!GO:0046467;membrane lipid biosynthetic process;0.00268891440278801!GO:0046483;heterocycle metabolic process;0.00274520669076336!GO:0004177;aminopeptidase activity;0.00279197959016179!GO:0051287;NAD binding;0.00279197959016179!GO:0008154;actin polymerization and/or depolymerization;0.00303107957163633!GO:0008610;lipid biosynthetic process;0.00334702865646209!GO:0000785;chromatin;0.0034814934599601!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00368363533516101!GO:0006509;membrane protein ectodomain proteolysis;0.00380241231091263!GO:0033619;membrane protein proteolysis;0.00380241231091263!GO:0048500;signal recognition particle;0.00394120314333629!GO:0044437;vacuolar part;0.00397473001603778!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00405273215637838!GO:0050789;regulation of biological process;0.00413046276995377!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00430451326250771!GO:0031497;chromatin assembly;0.00432073207939911!GO:0043284;biopolymer biosynthetic process;0.00432128911395643!GO:0016481;negative regulation of transcription;0.00433327273014455!GO:0016568;chromatin modification;0.00438390848805611!GO:0005813;centrosome;0.00464802176972869!GO:0019752;carboxylic acid metabolic process;0.00468794338071384!GO:0016310;phosphorylation;0.00468899386377134!GO:0030176;integral to endoplasmic reticulum membrane;0.00499698538090737!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00501097344346712!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00519037385108268!GO:0015002;heme-copper terminal oxidase activity;0.00519037385108268!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00519037385108268!GO:0004129;cytochrome-c oxidase activity;0.00519037385108268!GO:0006082;organic acid metabolic process;0.00521599713353636!GO:0007050;cell cycle arrest;0.00521599713353636!GO:0030127;COPII vesicle coat;0.00521599713353636!GO:0012507;ER to Golgi transport vesicle membrane;0.00521599713353636!GO:0005100;Rho GTPase activator activity;0.00539002481899825!GO:0006414;translational elongation;0.00540641244118391!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00541497828888334!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00564578327992514!GO:0043623;cellular protein complex assembly;0.0058103102428223!GO:0004004;ATP-dependent RNA helicase activity;0.0059480452482709!GO:0005765;lysosomal membrane;0.00596212489833295!GO:0006626;protein targeting to mitochondrion;0.00599142405598033!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00615485396437468!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00615485396437468!GO:0003729;mRNA binding;0.00645933495988559!GO:0003899;DNA-directed RNA polymerase activity;0.00648684278794143!GO:0030658;transport vesicle membrane;0.00699408408619573!GO:0043492;ATPase activity, coupled to movement of substances;0.00709908350176475!GO:0051540;metal cluster binding;0.00711130150740314!GO:0051536;iron-sulfur cluster binding;0.00711130150740314!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00711130150740314!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00711130150740314!GO:0006740;NADPH regeneration;0.00732036118922625!GO:0006098;pentose-phosphate shunt;0.00732036118922625!GO:0030041;actin filament polymerization;0.00757959323721711!GO:0019899;enzyme binding;0.0077105720720072!GO:0031072;heat shock protein binding;0.00778231547592094!GO:0051028;mRNA transport;0.00779397207809196!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00790459220297018!GO:0045047;protein targeting to ER;0.00790459220297018!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00794639067291878!GO:0030521;androgen receptor signaling pathway;0.00800073400825616!GO:0007033;vacuole organization and biogenesis;0.00836916599156782!GO:0006260;DNA replication;0.00839755160469692!GO:0048471;perinuclear region of cytoplasm;0.00848789264245179!GO:0050662;coenzyme binding;0.00875711802237182!GO:0006650;glycerophospholipid metabolic process;0.00875711802237182!GO:0007010;cytoskeleton organization and biogenesis;0.00900716695912136!GO:0033673;negative regulation of kinase activity;0.00941835801138385!GO:0006469;negative regulation of protein kinase activity;0.00941835801138385!GO:0007006;mitochondrial membrane organization and biogenesis;0.00941835801138385!GO:0048468;cell development;0.00951056781004842!GO:0006007;glucose catabolic process;0.0096992028979397!GO:0007040;lysosome organization and biogenesis;0.00970360707351529!GO:0006693;prostaglandin metabolic process;0.00977382482177879!GO:0006692;prostanoid metabolic process;0.00977382482177879!GO:0005815;microtubule organizing center;0.00984672743369453!GO:0030134;ER to Golgi transport vesicle;0.0100383788944135!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0100383788944135!GO:0008047;enzyme activator activity;0.0103404141233996!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0105477273192272!GO:0006497;protein amino acid lipidation;0.01054872996472!GO:0016408;C-acyltransferase activity;0.0108021402436321!GO:0008632;apoptotic program;0.0110789427628457!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0113306761379422!GO:0008312;7S RNA binding;0.0115599176204423!GO:0043488;regulation of mRNA stability;0.0116998747811633!GO:0043487;regulation of RNA stability;0.0116998747811633!GO:0016126;sterol biosynthetic process;0.0120900468687155!GO:0005869;dynactin complex;0.0123094649049085!GO:0051348;negative regulation of transferase activity;0.0124126171456452!GO:0030118;clathrin coat;0.0126878934351456!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0127871667733546!GO:0015630;microtubule cytoskeleton;0.0128380795139589!GO:0006839;mitochondrial transport;0.0131672255790028!GO:0042158;lipoprotein biosynthetic process;0.0131699873526334!GO:0006352;transcription initiation;0.0131870464402401!GO:0051128;regulation of cellular component organization and biogenesis;0.0134937163075733!GO:0051087;chaperone binding;0.0135922503585705!GO:0017166;vinculin binding;0.0139978115412162!GO:0005586;collagen type III;0.0141700451951822!GO:0042802;identical protein binding;0.0143017198415556!GO:0008180;signalosome;0.0143017198415556!GO:0016860;intramolecular oxidoreductase activity;0.0143589737046672!GO:0006383;transcription from RNA polymerase III promoter;0.0145189153979152!GO:0005694;chromosome;0.0147315135868577!GO:0051252;regulation of RNA metabolic process;0.0147819744605059!GO:0006778;porphyrin metabolic process;0.0147819744605059!GO:0033013;tetrapyrrole metabolic process;0.0147819744605059!GO:0005975;carbohydrate metabolic process;0.0147819744605059!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0148686264840725!GO:0016251;general RNA polymerase II transcription factor activity;0.0150036666358461!GO:0006354;RNA elongation;0.0159205363261539!GO:0006402;mRNA catabolic process;0.0160749394509268!GO:0030660;Golgi-associated vesicle membrane;0.0165102543200542!GO:0015629;actin cytoskeleton;0.0165102543200542!GO:0031529;ruffle organization and biogenesis;0.0165495270699517!GO:0031543;peptidyl-proline dioxygenase activity;0.0167444136521236!GO:0048487;beta-tubulin binding;0.0168528764656688!GO:0035035;histone acetyltransferase binding;0.0170014069406817!GO:0035258;steroid hormone receptor binding;0.0176146335782227!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0179727554372032!GO:0033043;regulation of organelle organization and biogenesis;0.0179727554372032!GO:0044420;extracellular matrix part;0.0179917318123787!GO:0006506;GPI anchor biosynthetic process;0.0180983116322176!GO:0007264;small GTPase mediated signal transduction;0.0190258301082513!GO:0003756;protein disulfide isomerase activity;0.0193658575283483!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0193658575283483!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0196626895675871!GO:0005862;muscle thin filament tropomyosin;0.0208022069329594!GO:0045893;positive regulation of transcription, DNA-dependent;0.0210521463722172!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0216049483718676!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0216470229724707!GO:0030984;kininogen binding;0.0217957595133486!GO:0004213;cathepsin B activity;0.0217957595133486!GO:0050790;regulation of catalytic activity;0.0218329254629426!GO:0045792;negative regulation of cell size;0.0218329254629426!GO:0019798;procollagen-proline dioxygenase activity;0.0219097372982881!GO:0005520;insulin-like growth factor binding;0.0224835362964542!GO:0043022;ribosome binding;0.022831366130754!GO:0051168;nuclear export;0.0229444895035937!GO:0048144;fibroblast proliferation;0.0229880859652163!GO:0048145;regulation of fibroblast proliferation;0.0229880859652163!GO:0006505;GPI anchor metabolic process;0.0230690077502108!GO:0030659;cytoplasmic vesicle membrane;0.0234294679288376!GO:0051539;4 iron, 4 sulfur cluster binding;0.023632026563074!GO:0000339;RNA cap binding;0.0237621171053869!GO:0030518;steroid hormone receptor signaling pathway;0.0238930939736958!GO:0003711;transcription elongation regulator activity;0.0238944553013933!GO:0030308;negative regulation of cell growth;0.0246383340239007!GO:0003746;translation elongation factor activity;0.0246805685615299!GO:0045941;positive regulation of transcription;0.0249125674627027!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0249125674627027!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0249125674627027!GO:0045045;secretory pathway;0.0249217326240701!GO:0008139;nuclear localization sequence binding;0.0261517277463765!GO:0007160;cell-matrix adhesion;0.0264411746508954!GO:0031901;early endosome membrane;0.0264425780725688!GO:0042168;heme metabolic process;0.0267201072708221!GO:0044427;chromosomal part;0.0272171738708797!GO:0050681;androgen receptor binding;0.0272171738708797!GO:0006897;endocytosis;0.0273097875322379!GO:0010324;membrane invagination;0.0273097875322379!GO:0031589;cell-substrate adhesion;0.0275426285624326!GO:0005583;fibrillar collagen;0.0278364496634383!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0278760811587844!GO:0005096;GTPase activator activity;0.0280538933302558!GO:0030119;AP-type membrane coat adaptor complex;0.0285065202183106!GO:0005099;Ras GTPase activator activity;0.0286882344328534!GO:0022408;negative regulation of cell-cell adhesion;0.0289678675140726!GO:0043065;positive regulation of apoptosis;0.0303197164211727!GO:0006401;RNA catabolic process;0.030329665988753!GO:0051101;regulation of DNA binding;0.030404649204171!GO:0048146;positive regulation of fibroblast proliferation;0.0304730173585292!GO:0000049;tRNA binding;0.0304730173585292!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0307468785334134!GO:0046519;sphingoid metabolic process;0.0310794968991352!GO:0050811;GABA receptor binding;0.031119419988504!GO:0006595;polyamine metabolic process;0.0311439566838116!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0311948045430701!GO:0051336;regulation of hydrolase activity;0.0315952078364036!GO:0030880;RNA polymerase complex;0.03182609535393!GO:0005996;monosaccharide metabolic process;0.0320717948214751!GO:0043433;negative regulation of transcription factor activity;0.0320717948214751!GO:0008234;cysteine-type peptidase activity;0.0321992076875738!GO:0019318;hexose metabolic process;0.0322581177402255!GO:0006672;ceramide metabolic process;0.0326492756831781!GO:0006892;post-Golgi vesicle-mediated transport;0.0326492756831781!GO:0006767;water-soluble vitamin metabolic process;0.0333344564674188!GO:0005669;transcription factor TFIID complex;0.0333344564674188!GO:0048037;cofactor binding;0.0333344564674188!GO:0006790;sulfur metabolic process;0.0333961134306528!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0333961134306528!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.033912358995826!GO:0005832;chaperonin-containing T-complex;0.0339279065166988!GO:0007034;vacuolar transport;0.034579909483659!GO:0006769;nicotinamide metabolic process;0.0350999188454744!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0352964917177726!GO:0030384;phosphoinositide metabolic process;0.0354650118723207!GO:0006779;porphyrin biosynthetic process;0.0358801693474332!GO:0033014;tetrapyrrole biosynthetic process;0.0358801693474332!GO:0007030;Golgi organization and biogenesis;0.0361253729336079!GO:0031625;ubiquitin protein ligase binding;0.0363268524572069!GO:0043068;positive regulation of programmed cell death;0.0363963274312954!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0367305997283565!GO:0003923;GPI-anchor transamidase activity;0.0367961096704002!GO:0016255;attachment of GPI anchor to protein;0.0367961096704002!GO:0042765;GPI-anchor transamidase complex;0.0367961096704002!GO:0030031;cell projection biogenesis;0.0367961096704002!GO:0030145;manganese ion binding;0.0370250570242138!GO:0000030;mannosyltransferase activity;0.0374603297177226!GO:0006739;NADP metabolic process;0.0379958457546233!GO:0016363;nuclear matrix;0.0380702540325584!GO:0000209;protein polyubiquitination;0.0383109520497104!GO:0045334;clathrin-coated endocytic vesicle;0.0387487525092309!GO:0007021;tubulin folding;0.038793959141287!GO:0016584;nucleosome positioning;0.0390939988396323!GO:0030125;clathrin vesicle coat;0.0392323062186791!GO:0030665;clathrin coated vesicle membrane;0.0392323062186791!GO:0003779;actin binding;0.0396444977644022!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0402692559805543!GO:0051059;NF-kappaB binding;0.0407559075765362!GO:0043414;biopolymer methylation;0.0408249742043618!GO:0006607;NLS-bearing substrate import into nucleus;0.0410845416651642!GO:0004300;enoyl-CoA hydratase activity;0.0412780063106012!GO:0000096;sulfur amino acid metabolic process;0.0414641047111415!GO:0009615;response to virus;0.041646184842961!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0418259033121008!GO:0010257;NADH dehydrogenase complex assembly;0.0418259033121008!GO:0033108;mitochondrial respiratory chain complex assembly;0.0418259033121008!GO:0031418;L-ascorbic acid binding;0.0421288304694272!GO:0030503;regulation of cell redox homeostasis;0.0427345057376928!GO:0001953;negative regulation of cell-matrix adhesion;0.0431421940041988!GO:0044275;cellular carbohydrate catabolic process;0.0431976486077199!GO:0032984;macromolecular complex disassembly;0.0435983883170965!GO:0004228;gelatinase A activity;0.0438318204371925!GO:0001955;blood vessel maturation;0.0438318204371925!GO:0000059;protein import into nucleus, docking;0.0440620884862109!GO:0006695;cholesterol biosynthetic process;0.0449252748916747!GO:0065007;biological regulation;0.0454666456621069!GO:0004287;prolyl oligopeptidase activity;0.0455738090121622!GO:0009225;nucleotide-sugar metabolic process;0.0456747405328283!GO:0006635;fatty acid beta-oxidation;0.0460677289221738!GO:0044433;cytoplasmic vesicle part;0.0460677289221738!GO:0030032;lamellipodium biogenesis;0.0462108441856447!GO:0030508;thiol-disulfide exchange intermediate activity;0.046435286715835!GO:0030131;clathrin adaptor complex;0.0478704463946893!GO:0001952;regulation of cell-matrix adhesion;0.0481660476816111!GO:0016272;prefoldin complex;0.0485247885329122!GO:0015036;disulfide oxidoreductase activity;0.0487920237190401!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0487920237190401!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0487920237190401!GO:0008320;protein transmembrane transporter activity;0.0487931275877177!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0494570565725004!GO:0008243;plasminogen activator activity;0.0495220769625521!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0497449889505837!GO:0006733;oxidoreduction coenzyme metabolic process;0.0498959734116777 | |||
|sample_id=11840 | |sample_id=11840 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|top_motifs=ZNF238:2.09711325808;GZF1:1.67867721581;PAX1,9:1.64101522846;MYBL2:1.60424932927;ALX4:1.52463924855;EN1,2:1.51800977226;HAND1,2:1.46727104299;RXR{A,B,G}:1.3728208922;HIF1A:1.33299326404;PAX4:1.3086156071;ATF6:1.28340685146;NR1H4:1.23918352411;EBF1:1.21549161306;SMAD1..7,9:1.18615423563;GLI1..3:1.17861285076;PDX1:1.16811731979;SRF:1.16783909613;GFI1B:1.11833798141;IRF1,2:1.09881118312;NR6A1:1.09194282713;UFEwm:1.04280883443;ZNF423:1.04154604828;TAL1_TCF{3,4,12}:1.0101231585;HOX{A4,D4}:0.981102258459;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.960554882004;FOXL1:0.958254141631;ESR1:0.956439744625;NR3C1:0.883672479022;NHLH1,2:0.865229882813;NFE2L1:0.849319110588;TP53:0.83898425276;STAT2,4,6:0.822670749235;TBP:0.816817663654;TEAD1:0.797490410249;HSF1,2:0.790792284872;NFATC1..3:0.783120254108;SPZ1:0.767129807408;PAX5:0.764581558755;TBX4,5:0.723970740647;DBP:0.718778429036;TLX1..3_NFIC{dimer}:0.686700618508;MAFB:0.671779231822;bHLH_family:0.66656351782;NKX3-1:0.640056504223;NKX2-2,8:0.614893620639;IRF7:0.601507474092;IKZF1:0.596328203331;POU3F1..4:0.561947553308;YY1:0.546713447361;BPTF:0.518162276483;TFCP2:0.502852738215;LHX3,4:0.502058609699;HLF:0.498754716132;MYFfamily:0.490502049891;AR:0.445734451362;NFE2L2:0.429111738825;ZBTB6:0.418470660166;XBP1:0.401464375991;KLF4:0.387334223255;HES1:0.380039114768;AHR_ARNT_ARNT2:0.378299475192;HOX{A5,B5}:0.368070273213;EVI1:0.36806365413;AIRE:0.356037600319;TFAP4:0.324365678575;NKX2-1,4:0.321712179678;FOXO1,3,4:0.292890573809;PPARG:0.288622797526;NKX3-2:0.280700911193;PRDM1:0.272947217527;HNF1A:0.258805920504;GTF2I:0.258075312124;ESRRA:0.238859625607;CDC5L:0.235838051145;HIC1:0.216916157151;HOXA9_MEIS1:0.179751682116;MZF1:0.179608954956;GCM1,2:0.179213398888;NANOG{mouse}:0.17428422537;FOS_FOS{B,L1}_JUN{B,D}:0.171298103288;DMAP1_NCOR{1,2}_SMARC:0.143655002712;MEF2{A,B,C,D}:0.131085185011;RFX2..5_RFXANK_RFXAP:0.113694543595;RXRA_VDR{dimer}:0.113554767209;GTF2A1,2:0.108633292599;ALX1:0.108591879262;REST:0.106607383105;HMX1:0.084808801694;BACH2:0.0765411543487;NFE2:0.0697914194581;FOSL2:0.0601447588208;LMO2:0.0504891909439;RFX1:0.0379480956981;RREB1:-0.00539168407715;SREBF1,2:-0.0239908991441;STAT1,3:-0.0248536938346;PRRX1,2:-0.0287861985496;NFIX:-0.0551758475161;HMGA1,2:-0.0604508070909;CEBPA,B_DDIT3:-0.079363779649;MED-1{core}:-0.0820853438815;RUNX1..3:-0.0898733387891;ATF5_CREB3:-0.112086078725;TFAP2B:-0.131700581109;FOXP3:-0.146376151303;TFAP2{A,C}:-0.149200602572;MTF1:-0.15015735523;NKX6-1,2:-0.16538217857;JUN:-0.172028246737;ZNF384:-0.177773328445;ZIC1..3:-0.252617170528;PATZ1:-0.257769334396;PAX6:-0.260573331241;TLX2:-0.263005081109;FOX{D1,D2}:-0.263379510193;NFKB1_REL_RELA:-0.269055026453;ELK1,4_GABP{A,B1}:-0.27163371334;MTE{core}:-0.273182070568;ONECUT1,2:-0.273499217263;MAZ:-0.274828165151;HNF4A_NR2F1,2:-0.286016658243;POU1F1:-0.29806786912;TOPORS:-0.299491171414;PAX3,7:-0.303110607987;POU6F1:-0.328472081649;SOX17:-0.359699322326;TGIF1:-0.365144756004;ZBTB16:-0.371596098645;ZNF148:-0.372119321738;PAX8:-0.37565129853;FOXD3:-0.376280851075;ZFP161:-0.389816237889;NRF1:-0.408603583044;FOXM1:-0.408632365852;SP1:-0.41426020168;ATF2:-0.418274489475;FOXP1:-0.439004857005;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.471346657967;STAT5{A,B}:-0.479369309643;SOX5:-0.485561397902;EGR1..3:-0.48885957521;HBP1_HMGB_SSRP1_UBTF:-0.508519173015;TEF:-0.512864017833;T:-0.513282127881;MYB:-0.51427872619;PAX2:-0.51605548613;CRX:-0.520736006793;GFI1:-0.526993897186;SOX2:-0.532733703515;XCPE1{core}:-0.536593759702;FOXN1:-0.556927324981;CREB1:-0.578741765272;NR5A1,2:-0.585710860403;IKZF2:-0.591309465004;ZNF143:-0.606675309215;SPI1:-0.611572772861;GATA4:-0.635567785855;ADNP_IRX_SIX_ZHX:-0.656158309122;RBPJ:-0.658077315135;LEF1_TCF7_TCF7L1,2:-0.68295798363;ETS1,2:-0.713164269461;SPIB:-0.742796574733;NKX2-3_NKX2-5:-0.749229486923;MYOD1:-0.762762072359;EP300:-0.792429243233;CDX1,2,4:-0.793280812815;ATF4:-0.80989113064;PITX1..3:-0.853970389554;POU2F1..3:-0.855872125224;ELF1,2,4:-0.870038056385;VSX1,2:-0.870843898081;RORA:-0.880792176494;E2F1..5:-0.937709970059;GATA6:-0.947077161503;FOX{I1,J2}:-0.954098768543;TFDP1:-0.959831529524;CUX2:-1.0328996939;NFIL3:-1.03391784913;SNAI1..3:-1.0445674299;OCT4_SOX2{dimer}:-1.05102162068;POU5F1:-1.09713910527;NANOG:-1.10655151972;ZEB1:-1.12663882943;NFY{A,B,C}:-1.153167949;SOX{8,9,10}:-1.1558873105;FOX{F1,F2,J1}:-1.18772264913;FOXQ1:-1.22076875853;PBX1:-1.24625176307;FOXA2:-1.26027819112;BREu{core}:-1.28205344696;ARID5B:-1.3043658921;HOX{A6,A7,B6,B7}:-2.09399797047 | |top_motifs=ZNF238:2.09711325808;GZF1:1.67867721581;PAX1,9:1.64101522846;MYBL2:1.60424932927;ALX4:1.52463924855;EN1,2:1.51800977226;HAND1,2:1.46727104299;RXR{A,B,G}:1.3728208922;HIF1A:1.33299326404;PAX4:1.3086156071;ATF6:1.28340685146;NR1H4:1.23918352411;EBF1:1.21549161306;SMAD1..7,9:1.18615423563;GLI1..3:1.17861285076;PDX1:1.16811731979;SRF:1.16783909613;GFI1B:1.11833798141;IRF1,2:1.09881118312;NR6A1:1.09194282713;UFEwm:1.04280883443;ZNF423:1.04154604828;TAL1_TCF{3,4,12}:1.0101231585;HOX{A4,D4}:0.981102258459;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.960554882004;FOXL1:0.958254141631;ESR1:0.956439744625;NR3C1:0.883672479022;NHLH1,2:0.865229882813;NFE2L1:0.849319110588;TP53:0.83898425276;STAT2,4,6:0.822670749235;TBP:0.816817663654;TEAD1:0.797490410249;HSF1,2:0.790792284872;NFATC1..3:0.783120254108;SPZ1:0.767129807408;PAX5:0.764581558755;TBX4,5:0.723970740647;DBP:0.718778429036;TLX1..3_NFIC{dimer}:0.686700618508;MAFB:0.671779231822;bHLH_family:0.66656351782;NKX3-1:0.640056504223;NKX2-2,8:0.614893620639;IRF7:0.601507474092;IKZF1:0.596328203331;POU3F1..4:0.561947553308;YY1:0.546713447361;BPTF:0.518162276483;TFCP2:0.502852738215;LHX3,4:0.502058609699;HLF:0.498754716132;MYFfamily:0.490502049891;AR:0.445734451362;NFE2L2:0.429111738825;ZBTB6:0.418470660166;XBP1:0.401464375991;KLF4:0.387334223255;HES1:0.380039114768;AHR_ARNT_ARNT2:0.378299475192;HOX{A5,B5}:0.368070273213;EVI1:0.36806365413;AIRE:0.356037600319;TFAP4:0.324365678575;NKX2-1,4:0.321712179678;FOXO1,3,4:0.292890573809;PPARG:0.288622797526;NKX3-2:0.280700911193;PRDM1:0.272947217527;HNF1A:0.258805920504;GTF2I:0.258075312124;ESRRA:0.238859625607;CDC5L:0.235838051145;HIC1:0.216916157151;HOXA9_MEIS1:0.179751682116;MZF1:0.179608954956;GCM1,2:0.179213398888;NANOG{mouse}:0.17428422537;FOS_FOS{B,L1}_JUN{B,D}:0.171298103288;DMAP1_NCOR{1,2}_SMARC:0.143655002712;MEF2{A,B,C,D}:0.131085185011;RFX2..5_RFXANK_RFXAP:0.113694543595;RXRA_VDR{dimer}:0.113554767209;GTF2A1,2:0.108633292599;ALX1:0.108591879262;REST:0.106607383105;HMX1:0.084808801694;BACH2:0.0765411543487;NFE2:0.0697914194581;FOSL2:0.0601447588208;LMO2:0.0504891909439;RFX1:0.0379480956981;RREB1:-0.00539168407715;SREBF1,2:-0.0239908991441;STAT1,3:-0.0248536938346;PRRX1,2:-0.0287861985496;NFIX:-0.0551758475161;HMGA1,2:-0.0604508070909;CEBPA,B_DDIT3:-0.079363779649;MED-1{core}:-0.0820853438815;RUNX1..3:-0.0898733387891;ATF5_CREB3:-0.112086078725;TFAP2B:-0.131700581109;FOXP3:-0.146376151303;TFAP2{A,C}:-0.149200602572;MTF1:-0.15015735523;NKX6-1,2:-0.16538217857;JUN:-0.172028246737;ZNF384:-0.177773328445;ZIC1..3:-0.252617170528;PATZ1:-0.257769334396;PAX6:-0.260573331241;TLX2:-0.263005081109;FOX{D1,D2}:-0.263379510193;NFKB1_REL_RELA:-0.269055026453;ELK1,4_GABP{A,B1}:-0.27163371334;MTE{core}:-0.273182070568;ONECUT1,2:-0.273499217263;MAZ:-0.274828165151;HNF4A_NR2F1,2:-0.286016658243;POU1F1:-0.29806786912;TOPORS:-0.299491171414;PAX3,7:-0.303110607987;POU6F1:-0.328472081649;SOX17:-0.359699322326;TGIF1:-0.365144756004;ZBTB16:-0.371596098645;ZNF148:-0.372119321738;PAX8:-0.37565129853;FOXD3:-0.376280851075;ZFP161:-0.389816237889;NRF1:-0.408603583044;FOXM1:-0.408632365852;SP1:-0.41426020168;ATF2:-0.418274489475;FOXP1:-0.439004857005;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.471346657967;STAT5{A,B}:-0.479369309643;SOX5:-0.485561397902;EGR1..3:-0.48885957521;HBP1_HMGB_SSRP1_UBTF:-0.508519173015;TEF:-0.512864017833;T:-0.513282127881;MYB:-0.51427872619;PAX2:-0.51605548613;CRX:-0.520736006793;GFI1:-0.526993897186;SOX2:-0.532733703515;XCPE1{core}:-0.536593759702;FOXN1:-0.556927324981;CREB1:-0.578741765272;NR5A1,2:-0.585710860403;IKZF2:-0.591309465004;ZNF143:-0.606675309215;SPI1:-0.611572772861;GATA4:-0.635567785855;ADNP_IRX_SIX_ZHX:-0.656158309122;RBPJ:-0.658077315135;LEF1_TCF7_TCF7L1,2:-0.68295798363;ETS1,2:-0.713164269461;SPIB:-0.742796574733;NKX2-3_NKX2-5:-0.749229486923;MYOD1:-0.762762072359;EP300:-0.792429243233;CDX1,2,4:-0.793280812815;ATF4:-0.80989113064;PITX1..3:-0.853970389554;POU2F1..3:-0.855872125224;ELF1,2,4:-0.870038056385;VSX1,2:-0.870843898081;RORA:-0.880792176494;E2F1..5:-0.937709970059;GATA6:-0.947077161503;FOX{I1,J2}:-0.954098768543;TFDP1:-0.959831529524;CUX2:-1.0328996939;NFIL3:-1.03391784913;SNAI1..3:-1.0445674299;OCT4_SOX2{dimer}:-1.05102162068;POU5F1:-1.09713910527;NANOG:-1.10655151972;ZEB1:-1.12663882943;NFY{A,B,C}:-1.153167949;SOX{8,9,10}:-1.1558873105;FOX{F1,F2,J1}:-1.18772264913;FOXQ1:-1.22076875853;PBX1:-1.24625176307;FOXA2:-1.26027819112;BREu{core}:-1.28205344696;ARID5B:-1.3043658921;HOX{A6,A7,B6,B7}:-2.09399797047 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11840-124H4;search_select_hide=table117:FF:11840-124H4 | |||
}} | }} | ||
Latest revision as of 18:23, 4 June 2020
| Name: | mesenchymal precursor cell - bone marrow, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13098 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13098
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13098
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.328 |
| 10 | 10 | 0.281 |
| 100 | 100 | 0.564 |
| 101 | 101 | 0.792 |
| 102 | 102 | 0.0404 |
| 103 | 103 | 0.0178 |
| 104 | 104 | 0.685 |
| 105 | 105 | 0.0688 |
| 106 | 106 | 0.279 |
| 107 | 107 | 0.104 |
| 108 | 108 | 0.283 |
| 109 | 109 | 0.626 |
| 11 | 11 | 0.386 |
| 110 | 110 | 0.319 |
| 111 | 111 | 0.7 |
| 112 | 112 | 0.306 |
| 113 | 113 | 0.137 |
| 114 | 114 | 0.0111 |
| 115 | 115 | 0.201 |
| 116 | 116 | 0.138 |
| 117 | 117 | 0.933 |
| 118 | 118 | 0.668 |
| 119 | 119 | 0.327 |
| 12 | 12 | 0.575 |
| 120 | 120 | 0.187 |
| 121 | 121 | 0.629 |
| 122 | 122 | 0.0115 |
| 123 | 123 | 0.17 |
| 124 | 124 | 0.49 |
| 125 | 125 | 0.782 |
| 126 | 126 | 0.777 |
| 127 | 127 | 0.648 |
| 128 | 128 | 0.485 |
| 129 | 129 | 0.566 |
| 13 | 13 | 0.736 |
| 130 | 130 | 0.182 |
| 131 | 131 | 0.419 |
| 132 | 132 | 0.296 |
| 133 | 133 | 0.678 |
| 134 | 134 | 0.203 |
| 135 | 135 | 0.966 |
| 136 | 136 | 0.734 |
| 137 | 137 | 0.887 |
| 138 | 138 | 0.67 |
| 139 | 139 | 0.578 |
| 14 | 14 | 0.507 |
| 140 | 140 | 0.341 |
| 141 | 141 | 0.221 |
| 142 | 142 | 0.301 |
| 143 | 143 | 0.745 |
| 144 | 144 | 0.181 |
| 145 | 145 | 0.329 |
| 146 | 146 | 0.827 |
| 147 | 147 | 0.116 |
| 148 | 148 | 0.331 |
| 149 | 149 | 0.16 |
| 15 | 15 | 0.605 |
| 150 | 150 | 0.432 |
| 151 | 151 | 0.487 |
| 152 | 152 | 0.132 |
| 153 | 153 | 0.148 |
| 154 | 154 | 0.846 |
| 155 | 155 | 0.0715 |
| 156 | 156 | 0.0568 |
| 157 | 157 | 0.763 |
| 158 | 158 | 0.00636 |
| 159 | 159 | 0.229 |
| 16 | 16 | 0.0214 |
| 160 | 160 | 0.329 |
| 161 | 161 | 0.797 |
| 162 | 162 | 0.423 |
| 163 | 163 | 0.648 |
| 164 | 164 | 0.072 |
| 165 | 165 | 0.502 |
| 166 | 166 | 0.00537 |
| 167 | 167 | 0.526 |
| 168 | 168 | 0.118 |
| 169 | 169 | 0.014 |
| 17 | 17 | 0.382 |
| 18 | 18 | 0.0948 |
| 19 | 19 | 0.00768 |
| 2 | 2 | 0.332 |
| 20 | 20 | 0.237 |
| 21 | 21 | 0.0463 |
| 22 | 22 | 0.149 |
| 23 | 23 | 0.0324 |
| 24 | 24 | 0.908 |
| 25 | 25 | 0.652 |
| 26 | 26 | 0.847 |
| 27 | 27 | 0.402 |
| 28 | 28 | 0.303 |
| 29 | 29 | 0.113 |
| 3 | 3 | 0.126 |
| 30 | 30 | 0.831 |
| 31 | 31 | 0.446 |
| 32 | 32 | 5.57233e-9 |
| 33 | 33 | 0.546 |
| 34 | 34 | 0.687 |
| 35 | 35 | 0.439 |
| 36 | 36 | 0.14 |
| 37 | 37 | 0.0349 |
| 38 | 38 | 0.81 |
| 39 | 39 | 0.0363 |
| 4 | 4 | 0.0191 |
| 40 | 40 | 0.23 |
| 41 | 41 | 0.321 |
| 42 | 42 | 0.817 |
| 43 | 43 | 0.173 |
| 44 | 44 | 0.613 |
| 45 | 45 | 0.772 |
| 46 | 46 | 0.134 |
| 47 | 47 | 0.915 |
| 48 | 48 | 0.942 |
| 49 | 49 | 0.683 |
| 5 | 5 | 0.491 |
| 50 | 50 | 0.395 |
| 51 | 51 | 0.69 |
| 52 | 52 | 0.49 |
| 53 | 53 | 0.402 |
| 54 | 54 | 0.983 |
| 55 | 55 | 0.193 |
| 56 | 56 | 0.652 |
| 57 | 57 | 0.975 |
| 58 | 58 | 0.7 |
| 59 | 59 | 0.0384 |
| 6 | 6 | 0.0268 |
| 60 | 60 | 0.371 |
| 61 | 61 | 0.633 |
| 62 | 62 | 0.318 |
| 63 | 63 | 0.0525 |
| 64 | 64 | 0.866 |
| 65 | 65 | 0.195 |
| 66 | 66 | 0.0863 |
| 67 | 67 | 0.279 |
| 68 | 68 | 0.771 |
| 69 | 69 | 0.488 |
| 7 | 7 | 0.563 |
| 70 | 70 | 0.0119 |
| 71 | 71 | 0.0741 |
| 72 | 72 | 0.454 |
| 73 | 73 | 0.065 |
| 74 | 74 | 0.209 |
| 75 | 75 | 0.373 |
| 76 | 76 | 0.764 |
| 77 | 77 | 0.0373 |
| 78 | 78 | 0.224 |
| 79 | 79 | 4.70574e-4 |
| 8 | 8 | 0.0566 |
| 80 | 80 | 0.373 |
| 81 | 81 | 0.5 |
| 82 | 82 | 0.095 |
| 83 | 83 | 0.804 |
| 84 | 84 | 0.348 |
| 85 | 85 | 0.259 |
| 86 | 86 | 0.35 |
| 87 | 87 | 0.418 |
| 88 | 88 | 0.362 |
| 89 | 89 | 0.00999 |
| 9 | 9 | 0.15 |
| 90 | 90 | 0.29 |
| 91 | 91 | 0.55 |
| 92 | 92 | 0.036 |
| 93 | 93 | 0.583 |
| 94 | 94 | 0.566 |
| 95 | 95 | 0.928 |
| 96 | 96 | 0.847 |
| 97 | 97 | 0.507 |
| 98 | 98 | 0.938 |
| 99 | 99 | 0.015 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13098
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000269 human mesenchymal precursor cell of bone marrow sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000269 (human mesenchymal precursor cell of bone marrow sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
