FFCP PHASE1:Hg19::chr12:122435304..122435308,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:122435304..122435308,- | |||
|coexpression_cluster_id=C138 | |||
|description=CAGE_peak_at_chr12:122435304..122435308,- | |description=CAGE_peak_at_chr12:122435304..122435308,- | ||
|id=chr12:122435304..122435308,- | |id=chr12:122435304..122435308,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000785;1.84e-34;1!CL:0000819;1.84e-34;1!CL:0000945;3.20e-13;24!CL:0002569;8.97e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,1.84e-34,1;CL:0000785,5.48e-18,2;CL:0000955,5.48e-18,2;CL:0000818,5.48e-18,2;CL:0000954,5.48e-18,2;CL:0000816,5.48e-18,2;CL:0000945,3.20e-13,24;CL:0000826,3.20e-13,24;CL:0000817,1.85e-12,3;CL:0002569,8.97e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0005425;7.05e-34;1!CL:0000954;5.48e-18;2!UBERON:0003056;2.89e-12;3 | |||
|ontology_enrichment_disease=DOID:0060058!4.58e-07!10 | |ontology_enrichment_disease=DOID:0060058!4.58e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:0060073;1.84e-34;1!DOID:8675;1.84e-34;1!DOID:0060058;1.68e-30;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,1.84e-34,1;DOID:8675,1.84e-34,1;DOID:0060058,1.68e-30,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.81e-08!94;UBERON:0001016!1.81e-08!94;UBERON:0001049!3.56e-08!57;UBERON:0005068!3.56e-08!57;UBERON:0006241!3.56e-08!57;UBERON:0007135!3.56e-08!57;UBERON:0001017!1.48e-07!82;UBERON:0000153!1.64e-07!129;UBERON:0007811!1.64e-07!129;UBERON:0003075!3.25e-07!86;UBERON:0007284!3.25e-07!86;UBERON:0007023!3.81e-07!115;UBERON:0005743!5.36e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;7.05e-34;1!UBERON:0001785;7.05e-34;1!UBERON:0002464;7.05e-34;1!UBERON:0004904;7.05e-34;1!UBERON:0001021;7.05e-34;1!UBERON:0003714;1.07e-17;2!UBERON:0005162;1.07e-17;2!UBERON:0000122;1.07e-17;2!UBERON:0001896;2.89e-12;3!UBERON:0005290;2.89e-12;3!UBERON:0004732;4.15e-11;13!UBERON:0003422;8.97e-07;6!UBERON:0002298;8.97e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,5.05e-34,1;UBERON:0001785,5.05e-34,1;UBERON:0002464,5.05e-34,1;UBERON:0004904,5.05e-34,1;UBERON:0001021,5.05e-34,1;UBERON:0003902,5.05e-34,1;UBERON:0005425,5.05e-34,1;UBERON:0003714,9.07e-18,2;UBERON:0005162,9.07e-18,2;UBERON:0000122,9.07e-18,2;UBERON:0001896,3.24e-12,3;UBERON:0005290,3.24e-12,3;UBERON:0010096,3.24e-12,3;UBERON:0004732,4.15e-11,13;UBERON:0001781,1.44e-09,4;UBERON:0000966,8.48e-07,6;UBERON:0005388,8.48e-07,6;UBERON:0001802,8.48e-07,6;UBERON:0003422,8.97e-07,6;UBERON:0002298,9.49e-07,6 | |||
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| ||
|short_description=p@chr12:122435304..122435308,- | |short_description=p@chr12:122435304..122435308,- | ||
}} | }} |
Latest revision as of 06:03, 24 July 2015
Short description: | p@chr12:122435304..122435308, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:122435304..122435308, - |
Coexpression cluster: | C138_diffuse_Burkitt_lymphangiectasia_lymphoma_acute_CD19_pineal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 1.84e-34 | 1 |
mature B cell | 5.48e-18 | 2 |
pre-B-II cell | 5.48e-18 | 2 |
transitional stage B cell | 5.48e-18 | 2 |
small pre-B-II cell | 5.48e-18 | 2 |
immature B cell | 5.48e-18 | 2 |
lymphocyte of B lineage | 3.20e-13 | 24 |
pro-B cell | 3.20e-13 | 24 |
precursor B cell | 1.85e-12 | 3 |
mesenchymal stem cell of umbilical cord | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 5.05e-34 | 1 |
cranial nerve | 5.05e-34 | 1 |
nerve trunk | 5.05e-34 | 1 |
nerve connecting eye with brain | 5.05e-34 | 1 |
nerve | 5.05e-34 | 1 |
retinal neural layer | 5.05e-34 | 1 |
presumptive neural retina | 5.05e-34 | 1 |
neural tissue | 9.07e-18 | 2 |
multi cell component structure | 9.07e-18 | 2 |
neuron projection bundle | 9.07e-18 | 2 |
medulla oblongata | 3.24e-12 | 3 |
myelencephalon | 3.24e-12 | 3 |
future myelencephalon | 3.24e-12 | 3 |
segmental subdivision of nervous system | 4.15e-11 | 13 |
layer of retina | 1.44e-09 | 4 |
retina | 8.48e-07 | 6 |
photoreceptor array | 8.48e-07 | 6 |
posterior segment of eyeball | 8.48e-07 | 6 |
mesenchyme of umbilical cord | 8.97e-07 | 6 |
brainstem | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 1.84e-34 | 1 |
lymphosarcoma | 1.84e-34 | 1 |
lymphoma | 1.68e-30 | 10 |