FFCP PHASE1:Hg19::chr2:18059906..18059945,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3790 | |EntrezGene=3790 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6302 | |HGNC=6302 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BQ31,Q4ZFY1 | |UniProt=Q9BQ31,Q4ZFY1 | ||
|association_with_transcript=0bp_to_ENST00000304101,ENST00000481414,NM_002252,uc002rcw.2_5end | |association_with_transcript=0bp_to_ENST00000304101,ENST00000481414,NM_002252,uc002rcw.2_5end | ||
|cluster_id=chr2:18059906..18059945,+ | |||
|description=CAGE_peak_1_at_KCNS3_5end | |description=CAGE_peak_1_at_KCNS3_5end | ||
|id=chr2:18059906..18059945,+ | |id=chr2:18059906..18059945,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!8.87e-31!365;UBERON:0000481!6.85e-21!347;UBERON:0000033!1.27e-18!123;UBERON:0000153!3.22e-18!129;UBERON:0007811!3.22e-18!129;UBERON:0004121!1.24e-17!169;UBERON:0007023!2.24e-17!115;UBERON:0000924!3.32e-16!173;UBERON:0006601!3.32e-16!173;UBERON:0000064!3.89e-15!219;UBERON:0000062!7.93e-14!511;UBERON:0005743!1.40e-13!86;UBERON:0000119!3.18e-13!312;UBERON:0000468!6.17e-13!659;UBERON:0000483!6.76e-13!309;UBERON:0003075!1.12e-12!86;UBERON:0007284!1.12e-12!86;UBERON:0001017!3.31e-12!82;UBERON:0000073!2.65e-11!94;UBERON:0001016!2.65e-11!94;UBERON:0000955!5.03e-11!69;UBERON:0006238!5.03e-11!69;UBERON:0002346!5.19e-11!90;UBERON:0000922!1.06e-10!612;UBERON:0000480!1.33e-10!626;UBERON:0000467!2.66e-10!625;UBERON:0001049!2.96e-10!57;UBERON:0005068!2.96e-10!57;UBERON:0006241!2.96e-10!57;UBERON:0007135!2.96e-10!57;UBERON:0002100!4.19e-10!216;UBERON:0003056!1.82e-09!61;UBERON:0000464!4.84e-09!104;UBERON:0002616!5.19e-09!59;UBERON:0004111!5.29e-09!241;UBERON:0001444!5.34e-09!48;UBERON:0005177!9.88e-09!107;UBERON:0000466!1.13e-08!126;UBERON:0002050!1.47e-08!605;UBERON:0005423!1.47e-08!605;UBERON:0000923!2.43e-08!604;UBERON:0005291!2.43e-08!604;UBERON:0006598!2.43e-08!604;UBERON:0002532!2.43e-08!604;UBERON:0000025!5.73e-08!194;UBERON:0001007!7.86e-08!155;UBERON:0001555!7.86e-08!155;UBERON:0007026!7.86e-08!155;UBERON:0000477!8.38e-08!286;UBERON:0003104!1.28e-07!238;UBERON:0009142!1.28e-07!238;UBERON:0004119!1.49e-07!169;UBERON:0000925!1.49e-07!169;UBERON:0006595!1.49e-07!169;UBERON:0000063!8.37e-07!97 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.20e-16,114;UBERON:0004121,4.17e-13,171;UBERON:0000924,4.17e-13,171;UBERON:0006601,4.17e-13,171;UBERON:0010371,1.80e-12,104;UBERON:0003075,4.17e-11,82;UBERON:0007284,4.17e-11,82;UBERON:0002346,9.66e-10,86;UBERON:0011216,1.06e-09,223;UBERON:0001017,3.36e-09,81;UBERON:0010314,1.63e-08,132;UBERON:0001444,1.81e-08,49;UBERON:0000955,2.40e-08,68;UBERON:0006238,2.40e-08,68;UBERON:0000033,3.06e-08,56;UBERON:0001049,3.44e-08,56;UBERON:0005068,3.44e-08,56;UBERON:0006241,3.44e-08,56;UBERON:0007135,3.44e-08,56;UBERON:0000119,7.26e-08,309;UBERON:0000483,9.98e-08,306;UBERON:0000153,1.00e-07,62;UBERON:0007811,1.00e-07,62;UBERON:0001016,1.26e-07,89;UBERON:0005177,1.89e-07,101;UBERON:0000922,1.94e-07,592;UBERON:0000073,2.88e-07,53;UBERON:0002616,2.88e-07,53;UBERON:0003056,3.53e-07,61;UBERON:0004111,4.00e-07,240;UBERON:0000489,8.47e-07,31 | |||
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|phase1_expression=1.45342703416445,0.856402095563933,1.12763523276777,5.00366491765652,0.893922188854576,0.872338524100369,0,0,2.08948502559871,5.40614660303319,18.1428303672831,0.655324116390517,1.31883489114227,0.866364470720326,0.662794751455832,0,0,0,0.487932798790507,1.84681587115182,3.26401105990805,2.19418305034661,1.14494394852423,3.14811177667634,3.26410862946487,0.0764134057479513,0,0,0,0,0,1.83884244895785,3.31326510656075,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,1.02290049474824,0.361439152384566,0.50133791063589,0.579386075843295,0,0.486634870302636,2.17430079477356,1.77383517970051,1.22968699970376,6.54895377488563,1.82147644146271,4.44941331341315,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0.825354125820202,0.626984899610432,0,0.35576626268671,0,0.402829317109147,0,0,0,0,0.17859945656816,0.44905874525234,0.112611480483322,0,0,0.366403487860815,0,0,0.872188104285069,0.993943903390637,0.25326102332916,0.397227542439656,0.286836620748814,0,0,0,0.74000264525148,0.311211035399766,0.269421344139376,0.326923806226917,0.605429710579726,0,0.234321431833797,0.936480230490962,0,0.896692083310806,1.40921398372518,1.61872944368132,2.80901613404497,1.02077085627447,3.0708579327942,2.6864703105699,5.94001428641027,7.17074094907815,0,0,4.88174730466792,4.12891115577482,0.831192346452549,7.90159717585508,3.98434134538726,3.00476117813194,0.226864366320042,0.717558542755448,0.213557388818567,0.423863802319124,1.80054657650641,1.44273540933814,0.772921620136887,2.79175284497385,1.5189869901714,1.85130309806277,0.504867548488229,0.644349290496095,5.98090410229604,0.355009592516614,1.5112814734146,0.847802961552438,2.51239109112286,4.36393792945335,3.72845974005705,12.1973706129595,10.8674410023618,8.24976994373581,5.59769697083,7.31730467539322,7.66452454059243,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0.134831308160164,0,0,0.738155454624648,1.40241773803446,1.2347220339942,2.94017422771084,0,0,1.18157981336281,0,0.122988438543114,0.857839051492628,1.86575485194663,0,2.71428225511403,3.88871469665824,0.977424915930974,2.07986957055916,1.44331342025273,1.85488647960123,0.821860859650752,0,0,0,2.37061319387782,5.15091697256924,0,0.468008530278475,0.594524649154913,1.87467667973554,4.19955320497149,3.82792762554443,0.985143749731331,1.45316969256981,1.15014803749563,0,0,0.207328115540772,0.432359860250884,0,4.44485260045183,8.02175693672383,5.86087236050235,3.4214489204541,1.13110241973656,1.8020583470635,10.0039251420702,2.01835951821649,2.1798003441664,0.7333828582095,3.10252117818667,0,2.535908257668,0.797814349754612,1.04007436911366,0.771622122786426,0,0.266422179016099,2.57360388584666,0,1.64648067356154,0.65147236858747,4.26470338491055,2.37585561880029,0.301439377059586,0,0.299918973546171,0,0.502257091432126,0,0.479249710983165,1.14861935834114,4.27910715122155,0.868687840005475,1.84928690295345,5.19276793395697,0,0,0,0,0,1.30139853857622,0,0.502548796003046,1.27587750330633,0,0,0,0.49076596687656,0,0,0.623912584592421,0.535286966391485,0,0.35142424497814,2.10662269809403,9.09630016223939,1.03473071292505,1.32845119707087,0.553107505625109,3.90976265106373,1.17480694477644,3.77457766191941,0,0,0.106727557803444,0,0,0,1.24053903909388,0.306923946576125,1.12264037773229,0.256278298511402,1.53512174720011,0.804269605718038,0,1.69630663182921,0.887808626565635,0.739144404124282,0,0.813472649219715,0,0.601519410909855,1.19705285616665,0.229628896329213,0,0,6.31679458070376,3.46569016969866,4.70609861506113,8.76835347919564,4.53872004239366,2.27466768141793,0.510281115829547,0.431831832204279,1.54227252690289,1.89662506280697,3.01013864312912,5.86215428003588,1.66215201785745,3.35812132083267,0,0,6.15480300279334,3.93617574839647,2.27764876265012,6.28550171051106,2.28923662045859,2.7228134973794,1.72279661398852,1.95018073810956,0,3.963499449977,0.770243085573222,0.921022048356777,1.37836572484531,0.751941714077915,0.145016693914229,0.93749290157711,2.58192903375538,1.32227932288782,0.960950336825531,1.14851441245126,1.51736671283325,0,0.62962469366128,0,0.308033580176089,1.06461206063404,1.73986598415015,2.59453906745488,0,3.72158369359667,2.21465597303108,0.38126038784765,0.511795582622668,0.42793898803392,0,1.56989728039846,2.15846949099978,0.54907405947211,0.706874414074119,0.606547444719948,0,0.421258456238981,0.975267478179181,0,0,0,0.141405431953713,0,0,0,0,0.578775534266688,1.31178950409327,1.42037263873893,1.239293992399,0.845086807596724,3.29846110069318,0.88424136911809,2.1400263088875,2.48332744849418,0.211107635297664,0,2.27683904259429,1.04980416073495,0.769776901804097,2.68120910214315,0,7.15492885903522,0.86101074534246,3.36942951335251,0.886860307073351,2.06751060186264,0,0,0,0.238231775457789,0,0,0,0,0,0,0.980160863924127,0,6.63638379691646,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| ||
|short_description=p1@KCNS3 | |short_description=p1@KCNS3 | ||
}} | }} |
Latest revision as of 20:24, 18 September 2015
Short description: | p1@KCNS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KCNS3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000304101, ENST00000481414, NM_002252, uc002rcw.2_5end |
EntrezGene: | KCNS3 |
HGNC: | 6302 |
UniProt: | Q9BQ31Q4ZFY1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.20e-16 | 114 |
ectoderm-derived structure | 4.17e-13 | 171 |
ectoderm | 4.17e-13 | 171 |
presumptive ectoderm | 4.17e-13 | 171 |
ecto-epithelium | 1.80e-12 | 104 |
neural plate | 4.17e-11 | 82 |
presumptive neural plate | 4.17e-11 | 82 |
neurectoderm | 9.66e-10 | 86 |
organ system subdivision | 1.06e-09 | 223 |
central nervous system | 3.36e-09 | 81 |
structure with developmental contribution from neural crest | 1.63e-08 | 132 |
subdivision of head | 1.81e-08 | 49 |
brain | 2.40e-08 | 68 |
future brain | 2.40e-08 | 68 |
head | 3.06e-08 | 56 |
neural tube | 3.44e-08 | 56 |
neural rod | 3.44e-08 | 56 |
future spinal cord | 3.44e-08 | 56 |
neural keel | 3.44e-08 | 56 |
cell layer | 7.26e-08 | 309 |
epithelium | 9.98e-08 | 306 |
anterior region of body | 1.00e-07 | 62 |
craniocervical region | 1.00e-07 | 62 |
nervous system | 1.26e-07 | 89 |
trunk region element | 1.89e-07 | 101 |
embryo | 1.94e-07 | 592 |
regional part of nervous system | 2.88e-07 | 53 |
regional part of brain | 2.88e-07 | 53 |
pre-chordal neural plate | 3.53e-07 | 61 |
anatomical conduit | 4.00e-07 | 240 |
cavitated compound organ | 8.47e-07 | 31 |