FFCP PHASE1:Hg19::chr4:926069..926123,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2580 | |EntrezGene=2580 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4113 | |HGNC=4113 | ||
|TSSclassifier=strong | |||
|UniProt=O14976,Q6P490,D6RAW3,D6RF16,D6RAQ7 | |UniProt=O14976,Q6P490,D6RAW3,D6RF16,D6RAQ7 | ||
|association_with_transcript=0bp_to_ENST00000314167,ENST00000398567,ENST00000502656,ENST00000507580,ENST00000512325_5end | |association_with_transcript=0bp_to_ENST00000314167,ENST00000398567,ENST00000502656,ENST00000507580,ENST00000512325_5end | ||
|cluster_id=chr4:926069..926123,- | |||
|description=CAGE_peak_1_at_GAK_5end | |description=CAGE_peak_1_at_GAK_5end | ||
|id=chr4:926069..926123,- | |id=chr4:926069..926123,- | ||
|ontology_enrichment_celltype=CL:0000766!2.34e-19!76;CL:0002057!4.17e-18!42;CL:0002009!2.54e-17!65;CL:0000557!7.06e-17!71;CL:0002194!1.73e-16!63;CL:0000576!1.73e-16!63;CL:0000040!1.73e-16!63;CL:0000559!1.73e-16!63;CL:0000738!5.18e-16!140;CL:0000860!1.34e-14!45;CL:0000839!2.78e-14!70;CL:0000763!1.33e-12!112;CL:0000049!1.33e-12!112;CL:0000988!2.97e-11!182;CL:0002087!3.12e-11!119;CL:0002031!1.71e-10!124;CL:0000037!2.67e-10!172;CL:0000566!2.67e-10!172;CL:0002032!1.16e-09!165;CL:0000837!1.16e-09!165 | |ontology_enrichment_celltype=CL:0000766!2.34e-19!76;CL:0002057!4.17e-18!42;CL:0002009!2.54e-17!65;CL:0000557!7.06e-17!71;CL:0002194!1.73e-16!63;CL:0000576!1.73e-16!63;CL:0000040!1.73e-16!63;CL:0000559!1.73e-16!63;CL:0000738!5.18e-16!140;CL:0000860!1.34e-14!45;CL:0000839!2.78e-14!70;CL:0000763!1.33e-12!112;CL:0000049!1.33e-12!112;CL:0000988!2.97e-11!182;CL:0002087!3.12e-11!119;CL:0002031!1.71e-10!124;CL:0000037!2.67e-10!172;CL:0000566!2.67e-10!172;CL:0002032!1.16e-09!165;CL:0000837!1.16e-09!165 | ||
|ontology_enrichment_celltype_v019=CL:0000473;3.99e-15;39!CL:0000234;3.99e-15;39!CL:0000860;7.06e-15;33!CL:0002057;7.06e-15;33!CL:0000576;3.87e-11;48!CL:0000766;1.10e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.29e-22,72;CL:0000473,5.36e-21,48;CL:0000234,5.36e-21,48;CL:0002009,1.09e-20,61;CL:0000557,5.47e-20,67;CL:0002194,8.16e-20,59;CL:0000576,8.16e-20,59;CL:0000040,8.16e-20,59;CL:0000559,8.16e-20,59;CL:0000860,4.17e-18,42;CL:0002057,4.17e-18,42;CL:0000738,5.83e-18,136;CL:0000839,4.36e-17,66;CL:0000763,1.64e-14,108;CL:0000049,1.64e-14,108;CL:0002087,6.09e-13,115;CL:0000988,2.32e-12,177;CL:0002031,4.34e-12,120;CL:0000037,1.29e-11,168;CL:0002032,5.93e-11,161;CL:0000837,5.93e-11,161 | |||
|ontology_enrichment_development_v019=CL:0002057;1.50e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.32e-20!112;UBERON:0002390!3.22e-20!102;UBERON:0003061!3.22e-20!102;UBERON:0007023!5.28e-16!115;UBERON:0003081!1.49e-14!216;UBERON:0002371!1.67e-14!80;UBERON:0002405!1.37e-12!115;UBERON:0001474!6.99e-12!86;UBERON:0001049!1.25e-09!57;UBERON:0005068!1.25e-09!57;UBERON:0006241!1.25e-09!57;UBERON:0007135!1.25e-09!57;UBERON:0002616!8.69e-08!59;UBERON:0004765!1.66e-07!101;UBERON:0001434!1.66e-07!101;UBERON:0002780!6.60e-07!41;UBERON:0001890!6.60e-07!41;UBERON:0006240!6.60e-07!41;UBERON:0003075!6.83e-07!86;UBERON:0007284!6.83e-07!86;UBERON:0000025!8.36e-07!194;UBERON:0000178!9.69e-07!15;UBERON:0000179!9.69e-07!15;UBERON:0000463!9.69e-07!15;UBERON:0003080!9.71e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.11e-23,108;UBERON:0002390,5.63e-23,98;UBERON:0003061,5.63e-23,98;UBERON:0002405,7.79e-18,93;UBERON:0002371,4.28e-17,76;UBERON:0007023,8.01e-16,114;UBERON:0003081,2.93e-14,203;UBERON:0001474,4.78e-14,82;UBERON:0004765,8.13e-11,90;UBERON:0001049,8.18e-10,56;UBERON:0005068,8.18e-10,56;UBERON:0006241,8.18e-10,56;UBERON:0007135,8.18e-10,56;UBERON:0000073,2.07e-09,53;UBERON:0002616,2.07e-09,53;UBERON:0001434,2.79e-08,100;UBERON:0003075,1.98e-07,82;UBERON:0007284,1.98e-07,82;UBERON:0002780,6.60e-07,41;UBERON:0001890,6.60e-07,41;UBERON:0003080,6.60e-07,41;UBERON:0006240,6.60e-07,41;UBERON:0000025,8.65e-07,192;UBERON:0000178,9.69e-07,15;UBERON:0000179,9.69e-07,15;UBERON:0000463,9.69e-07,15 | |||
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| ||
|short_description=p1@GAK | |short_description=p1@GAK | ||
}} | }} |
Latest revision as of 09:19, 19 September 2015
Short description: | p1@GAK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GAK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000314167, ENST00000398567, ENST00000502656, ENST00000507580, ENST00000512325_5end |
EntrezGene: | GAK |
HGNC: | 4113 |
UniProt: | O14976Q6P490D6RAW3D6RF16D6RAQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.29e-22 | 72 |
defensive cell | 5.36e-21 | 48 |
phagocyte | 5.36e-21 | 48 |
macrophage dendritic cell progenitor | 1.09e-20 | 61 |
granulocyte monocyte progenitor cell | 5.47e-20 | 67 |
monopoietic cell | 8.16e-20 | 59 |
monocyte | 8.16e-20 | 59 |
monoblast | 8.16e-20 | 59 |
promonocyte | 8.16e-20 | 59 |
classical monocyte | 4.17e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.17e-18 | 42 |
leukocyte | 5.83e-18 | 136 |
myeloid lineage restricted progenitor cell | 4.36e-17 | 66 |
myeloid cell | 1.64e-14 | 108 |
common myeloid progenitor | 1.64e-14 | 108 |
nongranular leukocyte | 6.09e-13 | 115 |
hematopoietic cell | 2.32e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 4.34e-12 | 120 |
hematopoietic stem cell | 1.29e-11 | 168 |
hematopoietic oligopotent progenitor cell | 5.93e-11 | 161 |
hematopoietic multipotent progenitor cell | 5.93e-11 | 161 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.11e-23 | 108 |
hematopoietic system | 5.63e-23 | 98 |
blood island | 5.63e-23 | 98 |
immune system | 7.79e-18 | 93 |
bone marrow | 4.28e-17 | 76 |
adult organism | 8.01e-16 | 114 |
lateral plate mesoderm | 2.93e-14 | 203 |
bone element | 4.78e-14 | 82 |
skeletal element | 8.13e-11 | 90 |
neural tube | 8.18e-10 | 56 |
neural rod | 8.18e-10 | 56 |
future spinal cord | 8.18e-10 | 56 |
neural keel | 8.18e-10 | 56 |
regional part of nervous system | 2.07e-09 | 53 |
regional part of brain | 2.07e-09 | 53 |
skeletal system | 2.79e-08 | 100 |
neural plate | 1.98e-07 | 82 |
presumptive neural plate | 1.98e-07 | 82 |
regional part of forebrain | 6.60e-07 | 41 |
forebrain | 6.60e-07 | 41 |
anterior neural tube | 6.60e-07 | 41 |
future forebrain | 6.60e-07 | 41 |
tube | 8.65e-07 | 192 |
blood | 9.69e-07 | 15 |
haemolymphatic fluid | 9.69e-07 | 15 |
organism substance | 9.69e-07 | 15 |