FFCP PHASE1:Hg19::chr5:5140408..5140419,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=170690 | |EntrezGene=170690 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17108 | |HGNC=17108 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TE57,Q2XQZ0,F5H441 | |UniProt=Q8TE57,Q2XQZ0,F5H441 | ||
|association_with_transcript=-23bp_to_ENST00000274181,ENST00000511368,ENST00000536857,NM_139056,uc003jdj.1,uc003jdk.1,uc003jdl.2_5end | |association_with_transcript=-23bp_to_ENST00000274181,ENST00000511368,ENST00000536857,NM_139056,uc003jdj.1,uc003jdk.1,uc003jdl.2_5end | ||
|cluster_id=chr5:5140408..5140419,+ | |||
|coexpression_cluster_id=C2822 | |||
|description=CAGE_peak_4_at_ADAMTS16_5end | |description=CAGE_peak_4_at_ADAMTS16_5end | ||
|id=chr5:5140408..5140419,+ | |id=chr5:5140408..5140419,+ | ||
|ontology_enrichment_celltype=CL:0000047!1.03e-18!8;CL:0002319!1.51e-14!25;CL:0000540!3.07e-14!6;CL:0000031!3.07e-14!6;CL:0000404!3.07e-14!6;CL:0002322!9.62e-13!5;CL:0000128!1.51e-12!7;CL:0000126!1.51e-12!7;CL:0000127!1.51e-12!7;CL:0002453!1.51e-12!7;CL:0000133!2.67e-09!59;CL:0002605!2.25e-08!3;CL:0000221!5.71e-07!71 | |ontology_enrichment_celltype=CL:0000047!1.03e-18!8;CL:0002319!1.51e-14!25;CL:0000540!3.07e-14!6;CL:0000031!3.07e-14!6;CL:0000404!3.07e-14!6;CL:0002322!9.62e-13!5;CL:0000128!1.51e-12!7;CL:0000126!1.51e-12!7;CL:0000127!1.51e-12!7;CL:0002453!1.51e-12!7;CL:0000133!2.67e-09!59;CL:0002605!2.25e-08!3;CL:0000221!5.71e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0002319;3.20e-42;25!CL:0000128;1.65e-36;7!CL:0000126;1.65e-36;7!CL:0000127;1.65e-36;7!CL:0002322;2.48e-36;5!CL:0000540;5.01e-29;6!CL:0000404;5.01e-29;6!CL:0002605;1.75e-22;3!CL:0002321;5.47e-17;15!CL:0000047;6.21e-16;2!CL:0000243;8.76e-15;15!CL:0000125;8.76e-15;15!CL:0000095;3.55e-13;17!CL:0002603;1.28e-10;3!CL:0000222;1.65e-08;1!CL:0000148;3.85e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,9.76e-43,8;CL:0002319,2.79e-42,25;CL:0000128,1.21e-36,7;CL:0000126,1.21e-36,7;CL:0000127,1.21e-36,7;CL:0002453,1.21e-36,7;CL:0002322,2.40e-36,5;CL:0000540,4.33e-29,6;CL:0000031,4.33e-29,6;CL:0000404,4.33e-29,6;CL:0000133,4.85e-27,59;CL:0002605,1.01e-22,3;CL:0000221,9.39e-22,72;CL:0000243,7.76e-15,15;CL:0000125,7.76e-15,15;CL:0000030,7.76e-15,15;CL:0000339,7.76e-15,15;CL:0000095,3.18e-13,17;CL:0000123,3.18e-13,17;CL:0000333,2.90e-12,41;CL:0002603,1.41e-10,3;CL:0000148,3.85e-07,10;CL:0000541,3.85e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000031;5.01e-29;6!UBERON:0006215;1.09e-22;3!CL:0000133;2.90e-16;59!CL:0000339;8.76e-15;15!CL:0000221;5.24e-08;72 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.05e-31!82;UBERON:0005743!1.08e-30!86;UBERON:0000073!9.80e-27!94;UBERON:0001016!9.80e-27!94;UBERON:0001049!2.14e-21!57;UBERON:0005068!2.14e-21!57;UBERON:0006241!2.14e-21!57;UBERON:0007135!2.14e-21!57;UBERON:0002616!2.83e-20!59;UBERON:0000955!7.64e-19!69;UBERON:0006238!7.64e-19!69;UBERON:0003075!2.16e-16!86;UBERON:0007284!2.16e-16!86;UBERON:0001893!2.28e-16!34;UBERON:0001869!7.96e-16!32;UBERON:0002346!2.75e-15!90;UBERON:0002791!4.12e-15!33;UBERON:0000956!9.20e-15!25;UBERON:0000203!9.20e-15!25;UBERON:0007023!1.93e-14!115;UBERON:0004121!1.51e-13!169;UBERON:0000924!5.65e-13!173;UBERON:0006601!5.65e-13!173;UBERON:0002020!6.16e-13!34;UBERON:0003528!6.16e-13!34;UBERON:0002780!8.23e-13!41;UBERON:0001890!8.23e-13!41;UBERON:0006240!8.23e-13!41;UBERON:0003080!2.12e-12!42;UBERON:0004733!1.44e-11!12;UBERON:0002028!1.44e-11!12;UBERON:0007277!1.44e-11!12;UBERON:0000033!2.59e-11!123;UBERON:0001950!2.62e-11!20;UBERON:0000153!2.90e-11!129;UBERON:0007811!2.90e-11!129;UBERON:0003076!3.31e-11!15;UBERON:0003057!3.31e-11!15;UBERON:0004732!1.50e-10!13;UBERON:0002037!1.70e-10!6;UBERON:0006215!1.70e-10!6;UBERON:0003056!2.30e-10!61;UBERON:0002619!4.33e-10!22;UBERON:0002680!1.83e-09!9;UBERON:0001895!1.83e-09!9;UBERON:0010092!1.83e-09!9;UBERON:0003135!3.64e-09!11;UBERON:0000922!6.50e-07!612;UBERON:0000473!7.26e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.76e-30;6!UBERON:0002680;3.65e-20;9!UBERON:0001895;3.65e-20;9!UBERON:0004733;4.34e-15;12!UBERON:0002028;4.34e-15;12!UBERON:0004732;6.47e-14;13!UBERON:0007029;2.95e-08;1!UBERON:0000922;4.66e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.31e-30,6;UBERON:0006215,3.31e-30,6;UBERON:0002680,4.12e-20,9;UBERON:0001895,4.12e-20,9;UBERON:0010092,4.12e-20,9;UBERON:0001017,4.55e-19,81;UBERON:0001016,6.66e-17,89;UBERON:0004733,4.75e-15,12;UBERON:0002028,4.75e-15,12;UBERON:0007277,4.75e-15,12;UBERON:0004732,7.03e-14,13;UBERON:0003076,5.26e-12,15;UBERON:0003057,5.26e-12,15;UBERON:0004121,1.22e-08,171;UBERON:0000924,1.22e-08,171;UBERON:0006601,1.22e-08,171;UBERON:0007029,2.46e-08,1;UBERON:0000073,1.52e-07,53;UBERON:0002616,1.52e-07,53;UBERON:0001049,4.34e-07,56;UBERON:0005068,4.34e-07,56;UBERON:0006241,4.34e-07,56;UBERON:0007135,4.34e-07,56;UBERON:0000955,5.31e-07,68;UBERON:0006238,5.31e-07,68 | |||
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| ||
|short_description=p4@ADAMTS16 | |short_description=p4@ADAMTS16 | ||
}} | }} |
Latest revision as of 02:04, 18 September 2015
Short description: | p4@ADAMTS16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ADAMTS16_5end |
Coexpression cluster: | C2822_Neural_Astrocyte_kidney_mesodermal_H9_cerebellum_Neurons |
Association with transcript: | -23bp_to_ENST00000274181, ENST00000511368, ENST00000536857, NM_139056, uc003jdj.1, uc003jdk.1, uc003jdl.2_5end |
EntrezGene: | ADAMTS16 |
HGNC: | 17108 |
UniProt: | Q8TE57Q2XQZ0F5H441 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 9.76e-43 | 8 |
neural cell | 2.79e-42 | 25 |
oligodendrocyte | 1.21e-36 | 7 |
macroglial cell | 1.21e-36 | 7 |
astrocyte | 1.21e-36 | 7 |
oligodendrocyte precursor cell | 1.21e-36 | 7 |
embryonic stem cell | 2.40e-36 | 5 |
neuron | 4.33e-29 | 6 |
neuroblast | 4.33e-29 | 6 |
electrically signaling cell | 4.33e-29 | 6 |
neurectodermal cell | 4.85e-27 | 59 |
astrocyte of the cerebral cortex | 1.01e-22 | 3 |
ectodermal cell | 9.39e-22 | 72 |
glial cell (sensu Vertebrata) | 7.76e-15 | 15 |
glial cell | 7.76e-15 | 15 |
glioblast | 7.76e-15 | 15 |
glioblast (sensu Vertebrata) | 7.76e-15 | 15 |
neuron associated cell | 3.18e-13 | 17 |
neuron associated cell (sensu Vertebrata) | 3.18e-13 | 17 |
migratory neural crest cell | 2.90e-12 | 41 |
astrocyte of the cerebellum | 1.41e-10 | 3 |
melanocyte | 3.85e-07 | 10 |
melanoblast | 3.85e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.31e-30 | 6 |
rhombic lip | 3.31e-30 | 6 |
regional part of metencephalon | 4.12e-20 | 9 |
metencephalon | 4.12e-20 | 9 |
future metencephalon | 4.12e-20 | 9 |
central nervous system | 4.55e-19 | 81 |
nervous system | 6.66e-17 | 89 |
segmental subdivision of hindbrain | 4.75e-15 | 12 |
hindbrain | 4.75e-15 | 12 |
presumptive hindbrain | 4.75e-15 | 12 |
segmental subdivision of nervous system | 7.03e-14 | 13 |
posterior neural tube | 5.26e-12 | 15 |
chordal neural plate | 5.26e-12 | 15 |
ectoderm-derived structure | 1.22e-08 | 171 |
ectoderm | 1.22e-08 | 171 |
presumptive ectoderm | 1.22e-08 | 171 |
surface | 2.46e-08 | 1 |
regional part of nervous system | 1.52e-07 | 53 |
regional part of brain | 1.52e-07 | 53 |
neural tube | 4.34e-07 | 56 |
neural rod | 4.34e-07 | 56 |
future spinal cord | 4.34e-07 | 56 |
neural keel | 4.34e-07 | 56 |
brain | 5.31e-07 | 68 |
future brain | 5.31e-07 | 68 |