FFCP PHASE1:Hg19::chr8:82754427..82754475,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64089 | |EntrezGene=64089 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14980 | |HGNC=14980 | ||
|TSSclassifier=strong | |||
|UniProt=Q658L0,E5RJ65,E5RGS8 | |UniProt=Q658L0,E5RJ65,E5RGS8 | ||
|association_with_transcript=0bp_to_ENST00000353788,ENST00000518183,ENST00000520618_5end | |association_with_transcript=0bp_to_ENST00000353788,ENST00000518183,ENST00000520618_5end | ||
|cluster_id=chr8:82754427..82754475,- | |||
|description=CAGE_peak_2_at_SNX16_5end | |description=CAGE_peak_2_at_SNX16_5end | ||
|id=chr8:82754427..82754475,- | |id=chr8:82754427..82754475,- | ||
|ontology_enrichment_celltype=CL:0000839!4.96e-11!70;CL:0000766!9.04e-10!76;CL:0002194!8.71e-09!63;CL:0000576!8.71e-09!63;CL:0000040!8.71e-09!63;CL:0000559!8.71e-09!63;CL:0000557!1.37e-08!71;CL:0002009!6.62e-08!65 | |ontology_enrichment_celltype=CL:0000839!4.96e-11!70;CL:0000766!9.04e-10!76;CL:0002194!8.71e-09!63;CL:0000576!8.71e-09!63;CL:0000040!8.71e-09!63;CL:0000559!8.71e-09!63;CL:0000557!1.37e-08!71;CL:0002009!6.62e-08!65 | ||
|ontology_enrichment_celltype_v019=CL:0000473;2.54e-07;39!CL:0000234;2.54e-07;39!CL:0000860;4.64e-07;33!CL:0002057;4.64e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,4.54e-12,66;CL:0000766,6.13e-11,72;CL:0002194,1.20e-09,59;CL:0000576,1.20e-09,59;CL:0000040,1.20e-09,59;CL:0000559,1.20e-09,59;CL:0000557,1.69e-09,67;CL:0002009,1.23e-08,61;CL:0000473,2.04e-08,48;CL:0000234,2.04e-08,48;CL:0000763,2.01e-07,108;CL:0000049,2.01e-07,108;CL:0000860,5.09e-07,42;CL:0002057,5.09e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.12e-16!115;UBERON:0001017!1.59e-14!82;UBERON:0005743!1.16e-13!86;UBERON:0000073!1.14e-12!94;UBERON:0001016!1.14e-12!94;UBERON:0000955!1.92e-12!69;UBERON:0006238!1.92e-12!69;UBERON:0002616!3.29e-12!59;UBERON:0001049!4.02e-12!57;UBERON:0005068!4.02e-12!57;UBERON:0006241!4.02e-12!57;UBERON:0007135!4.02e-12!57;UBERON:0003080!3.81e-10!42;UBERON:0002780!7.73e-10!41;UBERON:0001890!7.73e-10!41;UBERON:0006240!7.73e-10!41;UBERON:0002020!6.22e-09!34;UBERON:0003528!6.22e-09!34;UBERON:0001893!3.96e-08!34;UBERON:0001869!4.83e-08!32;UBERON:0000153!5.69e-08!129;UBERON:0007811!5.69e-08!129;UBERON:0002791!8.43e-08!33;UBERON:0002346!8.62e-08!90;UBERON:0003075!1.36e-07!86;UBERON:0007284!1.36e-07!86;UBERON:0002371!4.08e-07!80;UBERON:0000033!5.20e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;1.29e-07;53!UBERON:0002616;1.29e-07;53!UBERON:0002780;1.78e-07;41!UBERON:0001890;1.78e-07;41!UBERON:0003528;1.79e-07;34!UBERON:0002020;1.79e-07;34!UBERON:0002791;2.96e-07;32!UBERON:0001869;4.24e-07;32!UBERON:0001893;4.77e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.30e-16,114;UBERON:0001017,1.00e-14,81;UBERON:0001016,1.39e-13,89;UBERON:0000955,1.47e-12,68;UBERON:0006238,1.47e-12,68;UBERON:0001049,1.74e-12,56;UBERON:0005068,1.74e-12,56;UBERON:0006241,1.74e-12,56;UBERON:0007135,1.74e-12,56;UBERON:0000073,7.21e-12,53;UBERON:0002616,7.21e-12,53;UBERON:0002780,2.82e-10,41;UBERON:0001890,2.82e-10,41;UBERON:0003080,2.82e-10,41;UBERON:0006240,2.82e-10,41;UBERON:0003528,3.90e-09,34;UBERON:0002020,3.90e-09,34;UBERON:0002791,2.37e-08,32;UBERON:0001893,2.65e-08,34;UBERON:0002405,2.88e-08,93;UBERON:0001869,3.29e-08,32;UBERON:0002371,5.09e-08,76;UBERON:0002346,1.75e-07,86;UBERON:0003075,2.45e-07,82;UBERON:0007284,2.45e-07,82 | |||
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| ||
|short_description=p2@SNX16 | |short_description=p2@SNX16 | ||
}} | }} |
Latest revision as of 06:39, 19 September 2015
Short description: | p2@SNX16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SNX16_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000353788, ENST00000518183, ENST00000520618_5end |
EntrezGene: | SNX16 |
HGNC: | 14980 |
UniProt: | Q658L0E5RJ65E5RGS8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 4.54e-12 | 66 |
myeloid leukocyte | 6.13e-11 | 72 |
monopoietic cell | 1.20e-09 | 59 |
monocyte | 1.20e-09 | 59 |
monoblast | 1.20e-09 | 59 |
promonocyte | 1.20e-09 | 59 |
granulocyte monocyte progenitor cell | 1.69e-09 | 67 |
macrophage dendritic cell progenitor | 1.23e-08 | 61 |
defensive cell | 2.04e-08 | 48 |
phagocyte | 2.04e-08 | 48 |
myeloid cell | 2.01e-07 | 108 |
common myeloid progenitor | 2.01e-07 | 108 |
classical monocyte | 5.09e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.09e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.30e-16 | 114 |
central nervous system | 1.00e-14 | 81 |
nervous system | 1.39e-13 | 89 |
brain | 1.47e-12 | 68 |
future brain | 1.47e-12 | 68 |
neural tube | 1.74e-12 | 56 |
neural rod | 1.74e-12 | 56 |
future spinal cord | 1.74e-12 | 56 |
neural keel | 1.74e-12 | 56 |
regional part of nervous system | 7.21e-12 | 53 |
regional part of brain | 7.21e-12 | 53 |
regional part of forebrain | 2.82e-10 | 41 |
forebrain | 2.82e-10 | 41 |
anterior neural tube | 2.82e-10 | 41 |
future forebrain | 2.82e-10 | 41 |
brain grey matter | 3.90e-09 | 34 |
gray matter | 3.90e-09 | 34 |
regional part of telencephalon | 2.37e-08 | 32 |
telencephalon | 2.65e-08 | 34 |
immune system | 2.88e-08 | 93 |
cerebral hemisphere | 3.29e-08 | 32 |
bone marrow | 5.09e-08 | 76 |
neurectoderm | 1.75e-07 | 86 |
neural plate | 2.45e-07 | 82 |
presumptive neural plate | 2.45e-07 | 82 |