FFCP PHASE1:Hg19::chr14:61788289..61788305,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:61788289..61788305,+
|short_description=p3@PRKCH
|description=CAGE_peak_3_at_PRKCH_5end
|association_with_transcript=-129bp_to_ENST00000332981_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5583 | |EntrezGene=5583 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9403 | |HGNC=9403 | ||
|TSSclassifier=strong | |||
|UniProt=P24723 | |UniProt=P24723 | ||
|association_with_transcript=-129bp_to_ENST00000332981_5end | |||
|cluster_id=chr14:61788289..61788305,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_PRKCH_5end | |||
|id=chr14:61788289..61788305,+ | |||
|ontology_enrichment_celltype=CL:0002139!3.45e-15!24;CL:0000115!1.39e-14!35;CL:0000791!8.06e-14!18;CL:0000789!8.06e-14!18;CL:0002420!8.06e-14!18;CL:0002419!8.06e-14!18;CL:0000790!8.06e-14!18;CL:0000071!1.25e-11!18;CL:0002546!1.25e-11!18;CL:0000084!2.11e-11!25;CL:0000827!2.11e-11!25;CL:0002078!1.25e-09!44;CL:0000625!2.89e-09!11 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.09e-20;24!CL:0000791;2.38e-18;18!CL:0000789;2.38e-18;18!CL:0002419;2.38e-18;18!CL:0000115;4.36e-17;36!CL:0000071;2.47e-15;18!CL:0000084;4.78e-15;25!CL:0000625;4.15e-12;11!CL:0002078;2.38e-09;45!CL:1000413;3.75e-08;9!CL:0000624;8.13e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,2.59e-20,36;CL:0002139,3.13e-20,24;CL:0000791,2.36e-18,18;CL:0000789,2.36e-18,18;CL:0002420,2.36e-18,18;CL:0002419,2.36e-18,18;CL:0000790,2.36e-18,18;CL:0000071,2.36e-15,18;CL:0002546,2.36e-15,18;CL:0000084,5.93e-15,25;CL:0000827,5.93e-15,25;CL:0002078,9.79e-14,45;CL:0000625,4.10e-12,11;CL:0000838,1.58e-09,52;CL:0000542,3.74e-09,53;CL:0000051,3.74e-09,53;CL:1000413,3.23e-08,9;CL:0000213,3.50e-08,58;CL:0000215,3.50e-08,58;CL:0000624,8.12e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;2.38e-18;18!CL:0002546;2.47e-15;18!UBERON:0004872;7.91e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.14e-29!115;UBERON:0001986!1.25e-11!18;UBERON:0004638!1.25e-11!18;UBERON:0004852!1.25e-11!18;UBERON:0000487!3.06e-08!22;UBERON:0006914!3.27e-07!25;UBERON:0000477!6.79e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.47e-15;18!UBERON:0001986;2.47e-15;18!UBERON:0004852;2.47e-15;18!UBERON:0000487;3.03e-11;22!UBERON:0007023;5.98e-10;114!UBERON:0006914;4.30e-09;25!UBERON:0003915;3.75e-08;9!UBERON:0004700;3.75e-08;9!UBERON:0001917;3.75e-08;9!UBERON:0000178;7.62e-08;15!UBERON:0000179;7.62e-08;15!UBERON:0000463;7.62e-08;15!UBERON:0002193;1.13e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.26e-37,114;UBERON:0004638,2.36e-15,18;UBERON:0001986,2.36e-15,18;UBERON:0004852,2.36e-15,18;UBERON:0000487,2.93e-11,22;UBERON:0006914,4.17e-09,25;UBERON:0003915,3.23e-08,9;UBERON:0004700,3.23e-08,9;UBERON:0001917,3.23e-08,9;UBERON:0004177,5.80e-08,7;UBERON:0005057,5.80e-08,7;UBERON:0000178,7.79e-08,15;UBERON:0000179,7.79e-08,15;UBERON:0000463,7.79e-08,15;UBERON:0001009,9.56e-08,112;UBERON:0004111,1.71e-07,240;UBERON:0001049,3.73e-07,56;UBERON:0005068,3.73e-07,56;UBERON:0006241,3.73e-07,56;UBERON:0007135,3.73e-07,56;UBERON:0004535,4.44e-07,109;UBERON:0000073,7.88e-07,53;UBERON:0002616,7.88e-07,53 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0.487932798790507,0,0,0.313454721478088,0,0,0,6.1130724598361,6.23964479819588,4.72264687882075,2.75354993794233,9.59573495243032,4.33485145285013,0.919421224478927,0.6024118375565,0.369754010166788,0,0,2.64240395401362,2.76997704265939,4.41197784434312,6.2933152507597,0.895661896959697,5.18229865630367,1.80302897343931,0.726991193897824,0.755751887377619,0.242584061187816,0.464858073811369,0,0.309706370895104,0.575384784644301,0.512321413058201,0,0,0.645484683583826,0,0.376484679085209,0.545812300115692,0.674170453335254,0.918251677112708,0.320929027076094,0,0,0.199463657621632,0.852449501065388,0.290209238628584,1.13477044938228,0.622822248995575,0.75374599577023,0,0.868755378820466,1.81619850790011,0.368277635987565,0,0,0.212604299965044,0,0.561643155732475,0.300353785683013,0,0,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0.382273228125229,0,6.1655941927969,0,13.9663936780821,9.43225830597995,9.04646595597841,14.545225098989,11.4072793321757,8.99550830895993,5.84480185223734,5.45911238737351,6.48132996444642,3.1014745241707,6.49929273036037,5.76410938765538,4.29195846947598,10.3595879900316,13.2648008537207,14.4901542867526,9.19376691604775,6.95606153033254,4.18142095219907,9.97122215738582,9.19729184644611,10.3088233644789,5.81945291644857,9.2383970153988,10.4173352617027,13.3063286222772,13.1000353597662,12.0307414485153,11.2437653897111,10.6549763419808,14.7803039445788,21.9751350114958,18.1859333132785,19.6961189280607,0,0,0.12786256184353,0.361439152384566,0,0.144846518960824,0,0.486634870302636,0,0,0.43917392846563,2.61958150995425,0.728590576585084,0.741568885568859,0.649094787309367,0,0.26591592103773,2.38490624305342,1.71598473234038,0.74291500265913,6.95668425783468,3.4409383804245,5.9013885273291,6.78369530308812,5.87299210693868,7.15306909044175,6.26984899610432,6.46041897923322,6.40379272836078,6.02497102976406,6.44526907374635,9.88353737434066,8.29810995663776,9.19157700864672,14.5825550618717,9.01927255669206,9.6547630229253,9.1215299191491,7.66583187329416,8.54339093611316,4.03043836646896,1.31780417436063,3.87780264148325,0.872188104285069,0,0,0,0,0,0.560677600142307,0,0,0.311211035399766,1.34710672069688,1.14423332179421,0,0,0,0,0.570471821544449,0,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0,0,0.901428353439581,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.272746120590835,0.286804595389004,0.487894824518382,0,0.348581828608555,0.207322110030741,0,0.36497735907583,0,0,0,0,0,1.18306800039844,0.842923450390509,0.241011029883482,1.43382164552112,0.871517776369625,1.18635309555548,0.808987848960987,0.196221465125346,0.769494313892781,4.42893272774789,1.40241773803446,0,0,0,0,1.77236972004421,1.32438929824395,0.491953754172454,0,0.548751427043128,0,0.703702806881416,0.925884451585296,0,0,0,0,0.117408694235822,8.8063533134255,12.9635943521451,12.9372823519527,2.37061319387782,1.71697232418975,0.984868024349589,1.40402559083543,0.594524649154913,0.93733833986777,0.335964256397719,0.992425680696705,0.806026704325635,0,0.766765358330422,0.492663237895943,0.264145302039678,3.52457796419313,5.90891809009542,3.40854570251226,2.03193261734941,0.763976851116555,2.34434894420094,0,0.925447434329912,0,0.857479297891735,0.336393253036082,0,0.22001485746285,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.977208552881205,0,0,0,0,0,1.2162378064119,0,0,0.718874566474748,0,1.42636905040718,0,0.410952645100767,0,37.3243529498446,24.6288450252409,21.5627574859517,21.1766009861585,0,0,0,0,0,0.749007023947182,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,10.7519373583901,7.33428282783297,10.3525731069341,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.601519410909855,0.368323955743585,0,0,0.131124414959424,1.35359883872224,0.462092022626489,0,0,0,6.8240030442538,7.99440414799624,2.59099099322567,7.71136263451447,0,0,0,0,0,0,0.261435451024901,0.256450125116389,0,0,4.32772248920434,0.0915694648183434,0,0,1.30012049207304,0,0,0.154048617114644,0,0,0,0,0.170453254832202,0,0.165284915360978,0.192190067365106,0.382838137483752,0.50578890427775,0,0,0,0.308033580176089,0,0,1.66791797193528,0,0.744316738719335,0.316379424718726,0.38126038784765,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0.66343897524122,2.19225442626881,0,0,0,0.6196469961995,0,0,0,0,0,0.422215270595328,0,0,0,0.962221127255121,0,0,4.5189024372854,0,0,0,0.918893600827838,5.58192370155386,9.1756464857085,7.97506062043828,7.14695326373367,6.17043409629291,5.83625980073446,7.56044012133361,3.96562588147135,0,0,1.71528151186722,0,0,8.11017014171921,3.66680427276291,0,0,0.846694330895531,0,0,0,0,0,0.50787533340481,0,0,0.425846237690326,0,0.614481528616916,0.447352215784832,0.500547425135725,0,0,0,0.270455678475983,0,0,0.561421621224659,4.39524537815682,0,0.111443384277478,0,0.95497793895076,0.296964680832639,2.15012491469462,0,1.82870241333667,0.111308705022906,0,0.633376224383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| ||
|short_description=p3@PRKCH | |||
}} | }} |
Latest revision as of 21:40, 24 September 2015
Short description: | p3@PRKCH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRKCH_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -129bp_to_ENST00000332981_5end |
EntrezGene: | PRKCH |
HGNC: | 9403 |
UniProt: | P24723 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 2.59e-20 | 36 |
endothelial cell of vascular tree | 3.13e-20 | 24 |
mature alpha-beta T cell | 2.36e-18 | 18 |
alpha-beta T cell | 2.36e-18 | 18 |
immature T cell | 2.36e-18 | 18 |
mature T cell | 2.36e-18 | 18 |
immature alpha-beta T cell | 2.36e-18 | 18 |
blood vessel endothelial cell | 2.36e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.36e-15 | 18 |
T cell | 5.93e-15 | 25 |
pro-T cell | 5.93e-15 | 25 |
meso-epithelial cell | 9.79e-14 | 45 |
CD8-positive, alpha-beta T cell | 4.10e-12 | 11 |
lymphoid lineage restricted progenitor cell | 1.58e-09 | 52 |
lymphocyte | 3.74e-09 | 53 |
common lymphoid progenitor | 3.74e-09 | 53 |
endothelial cell of artery | 3.23e-08 | 9 |
lining cell | 3.50e-08 | 58 |
barrier cell | 3.50e-08 | 58 |
CD4-positive, alpha-beta T cell | 8.12e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.26e-37 | 114 |
blood vessel endothelium | 2.36e-15 | 18 |
endothelium | 2.36e-15 | 18 |
cardiovascular system endothelium | 2.36e-15 | 18 |
simple squamous epithelium | 2.93e-11 | 22 |
squamous epithelium | 4.17e-09 | 25 |
endothelial tube | 3.23e-08 | 9 |
arterial system endothelium | 3.23e-08 | 9 |
endothelium of artery | 3.23e-08 | 9 |
hemopoietic organ | 5.80e-08 | 7 |
immune organ | 5.80e-08 | 7 |
blood | 7.79e-08 | 15 |
haemolymphatic fluid | 7.79e-08 | 15 |
organism substance | 7.79e-08 | 15 |
circulatory system | 9.56e-08 | 112 |
anatomical conduit | 1.71e-07 | 240 |
neural tube | 3.73e-07 | 56 |
neural rod | 3.73e-07 | 56 |
future spinal cord | 3.73e-07 | 56 |
neural keel | 3.73e-07 | 56 |
cardiovascular system | 4.44e-07 | 109 |
regional part of nervous system | 7.88e-07 | 53 |
regional part of brain | 7.88e-07 | 53 |