FFCP PHASE1:Hg19::chr5:10353780..10353890,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10299 | |EntrezGene=10299 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30550 | |HGNC=30550 | ||
|TSSclassifier=strong | |||
|UniProt=O60337,B4DT33,D6RHY7,B4DKJ2 | |UniProt=O60337,B4DT33,D6RHY7,B4DKJ2 | ||
|association_with_transcript=0bp_to_ENST00000274140,ENST00000449913,ENST00000502795,ENST00000503788,ENST00000511802,NM_005885,uc003jet.1,uc003jeu.1,uc011cmu.1,uc011cmv.1_5end | |association_with_transcript=0bp_to_ENST00000274140,ENST00000449913,ENST00000502795,ENST00000503788,ENST00000511802,NM_005885,uc003jet.1,uc003jeu.1,uc011cmu.1,uc011cmv.1_5end | ||
|cluster_id=chr5:10353780..10353890,+ | |||
|coexpression_cluster_id=C3437 | |||
|description=CAGE_peak_1_at_MARCH6_5end | |description=CAGE_peak_1_at_MARCH6_5end | ||
|id=chr5:10353780..10353890,+ | |id=chr5:10353780..10353890,+ | ||
|ontology_enrichment_celltype=CL:0000037!1.89e-09!172;CL:0000566!1.89e-09!172;CL:0002032!4.70e-09!165;CL:0000837!4.70e-09!165;CL:0000988!7.25e-09!182;CL:0000763!1.93e-08!112;CL:0000049!1.93e-08!112;CL:0000738!2.51e-08!140;CL:0000766!8.54e-08!76;CL:0000860!2.00e-07!45;CL:0002057!3.85e-07!42;CL:0002031!8.62e-07!124 | |ontology_enrichment_celltype=CL:0000037!1.89e-09!172;CL:0000566!1.89e-09!172;CL:0002032!4.70e-09!165;CL:0000837!4.70e-09!165;CL:0000988!7.25e-09!182;CL:0000763!1.93e-08!112;CL:0000049!1.93e-08!112;CL:0000738!2.51e-08!140;CL:0000766!8.54e-08!76;CL:0000860!2.00e-07!45;CL:0002057!3.85e-07!42;CL:0002031!8.62e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000860;6.04e-07;33!CL:0002057;6.04e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,5.65e-09,168;CL:0002032,1.38e-08,161;CL:0000837,1.38e-08,161;CL:0000988,1.61e-08,177;CL:0000763,5.78e-08,108;CL:0000049,5.78e-08,108;CL:0000738,7.26e-08,136;CL:0000766,2.59e-07,72;CL:0000860,3.85e-07,42;CL:0002057,3.85e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.02e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.63e-36!115;UBERON:0001017!8.01e-24!82;UBERON:0001049!2.42e-23!57;UBERON:0005068!2.42e-23!57;UBERON:0006241!2.42e-23!57;UBERON:0007135!2.42e-23!57;UBERON:0000073!1.10e-22!94;UBERON:0001016!1.10e-22!94;UBERON:0000955!1.99e-22!69;UBERON:0006238!1.99e-22!69;UBERON:0005743!3.09e-22!86;UBERON:0002616!8.75e-21!59;UBERON:0003080!1.07e-18!42;UBERON:0002780!4.70e-18!41;UBERON:0001890!4.70e-18!41;UBERON:0006240!4.70e-18!41;UBERON:0002020!2.45e-15!34;UBERON:0003528!2.45e-15!34;UBERON:0001893!6.73e-15!34;UBERON:0002791!1.43e-14!33;UBERON:0002346!3.25e-14!90;UBERON:0001869!3.57e-14!32;UBERON:0003075!7.09e-14!86;UBERON:0007284!7.09e-14!86;UBERON:0002619!6.86e-13!22;UBERON:0001950!7.74e-12!20;UBERON:0000956!1.00e-11!25;UBERON:0000203!1.00e-11!25;UBERON:0003056!1.29e-09!61;UBERON:0002390!5.42e-08!102;UBERON:0003061!5.42e-08!102;UBERON:0000178!1.84e-07!15;UBERON:0000179!1.84e-07!15;UBERON:0000463!1.84e-07!15;UBERON:0000153!1.90e-07!129;UBERON:0007811!1.90e-07!129;UBERON:0000033!3.46e-07!123 | |ontology_enrichment_uberon=UBERON:0007023!1.63e-36!115;UBERON:0001017!8.01e-24!82;UBERON:0001049!2.42e-23!57;UBERON:0005068!2.42e-23!57;UBERON:0006241!2.42e-23!57;UBERON:0007135!2.42e-23!57;UBERON:0000073!1.10e-22!94;UBERON:0001016!1.10e-22!94;UBERON:0000955!1.99e-22!69;UBERON:0006238!1.99e-22!69;UBERON:0005743!3.09e-22!86;UBERON:0002616!8.75e-21!59;UBERON:0003080!1.07e-18!42;UBERON:0002780!4.70e-18!41;UBERON:0001890!4.70e-18!41;UBERON:0006240!4.70e-18!41;UBERON:0002020!2.45e-15!34;UBERON:0003528!2.45e-15!34;UBERON:0001893!6.73e-15!34;UBERON:0002791!1.43e-14!33;UBERON:0002346!3.25e-14!90;UBERON:0001869!3.57e-14!32;UBERON:0003075!7.09e-14!86;UBERON:0007284!7.09e-14!86;UBERON:0002619!6.86e-13!22;UBERON:0001950!7.74e-12!20;UBERON:0000956!1.00e-11!25;UBERON:0000203!1.00e-11!25;UBERON:0003056!1.29e-09!61;UBERON:0002390!5.42e-08!102;UBERON:0003061!5.42e-08!102;UBERON:0000178!1.84e-07!15;UBERON:0000179!1.84e-07!15;UBERON:0000463!1.84e-07!15;UBERON:0000153!1.90e-07!129;UBERON:0007811!1.90e-07!129;UBERON:0000033!3.46e-07!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.73e-13;41!UBERON:0001890;2.73e-13;41!UBERON:0003528;4.13e-13;34!UBERON:0002020;4.13e-13;34!UBERON:0002791;5.42e-13;32!UBERON:0001869;6.05e-13;32!UBERON:0002619;6.75e-13;22!UBERON:0001893;9.74e-13;34!UBERON:0000073;3.83e-12;53!UBERON:0002616;3.83e-12;53!UBERON:0001950;7.59e-12;20!UBERON:0000956;9.87e-12;25!UBERON:0000203;9.87e-12;25!UBERON:0001017;1.14e-10;75!UBERON:0000955;1.79e-10;68!UBERON:0001016;3.55e-10;83!UBERON:0007023;5.99e-10;114!UBERON:0000178;1.90e-07;15!UBERON:0000179;1.90e-07;15!UBERON:0000463;1.90e-07;15 | |||
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| ||
|short_description=p1@MARCH6 | |short_description=p1@MARCH6 | ||
}} | }} |
Latest revision as of 13:56, 19 September 2015
Short description: | p1@MARCH6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MARCH6_5end |
Coexpression cluster: | C3437_Whole_blood_Neutrophils_Eosinophils_parietal_occipital_breast |
Association with transcript: | 0bp_to_ENST00000274140, ENST00000449913, ENST00000502795, ENST00000503788, ENST00000511802, NM_005885, uc003jet.1, uc003jeu.1, uc011cmu.1, uc011cmv.1_5end |
EntrezGene: | MARCH6 |
HGNC: | 30550 |
UniProt: | O60337B4DT33D6RHY7B4DKJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 5.65e-09 | 168 |
hematopoietic oligopotent progenitor cell | 1.38e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.38e-08 | 161 |
hematopoietic cell | 1.61e-08 | 177 |
myeloid cell | 5.78e-08 | 108 |
common myeloid progenitor | 5.78e-08 | 108 |
leukocyte | 7.26e-08 | 136 |
myeloid leukocyte | 2.59e-07 | 72 |
classical monocyte | 3.85e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.85e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.04e-36 | 114 |
nervous system | 1.46e-23 | 89 |
central nervous system | 3.29e-23 | 81 |
neural tube | 1.08e-22 | 56 |
neural rod | 1.08e-22 | 56 |
future spinal cord | 1.08e-22 | 56 |
neural keel | 1.08e-22 | 56 |
brain | 8.34e-22 | 68 |
future brain | 8.34e-22 | 68 |
regional part of nervous system | 4.69e-21 | 53 |
regional part of brain | 4.69e-21 | 53 |
regional part of forebrain | 4.70e-18 | 41 |
forebrain | 4.70e-18 | 41 |
anterior neural tube | 4.70e-18 | 41 |
future forebrain | 4.70e-18 | 41 |
brain grey matter | 2.45e-15 | 34 |
gray matter | 2.45e-15 | 34 |
telencephalon | 6.73e-15 | 34 |
regional part of telencephalon | 2.60e-14 | 32 |
cerebral hemisphere | 3.57e-14 | 32 |
neurectoderm | 4.34e-14 | 86 |
neural plate | 9.28e-14 | 82 |
presumptive neural plate | 9.28e-14 | 82 |
regional part of cerebral cortex | 6.86e-13 | 22 |
neocortex | 7.74e-12 | 20 |
cerebral cortex | 1.00e-11 | 25 |
pallium | 1.00e-11 | 25 |
pre-chordal neural plate | 1.31e-09 | 61 |
organ system subdivision | 8.58e-09 | 223 |
hematopoietic system | 1.61e-07 | 98 |
blood island | 1.61e-07 | 98 |
blood | 1.84e-07 | 15 |
haemolymphatic fluid | 1.84e-07 | 15 |
organism substance | 1.84e-07 | 15 |