FFCP PHASE1:Hg19::chr14:22697561..22697584,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr14:22697561..22697584,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_at_chr14:22697561..22697584,+ | |description=CAGE_peak_at_chr14:22697561..22697584,+ | ||
|id=chr14:22697561..22697584,+ | |id=chr14:22697561..22697584,+ | ||
|ontology_enrichment_celltype=CL:0000791!3.30e-41!18;CL:0000789!3.30e-41!18;CL:0002420!3.30e-41!18;CL:0002419!3.30e-41!18;CL:0000790!3.30e-41!18;CL:0000084!1.73e-28!25;CL:0000827!1.73e-28!25;CL:0000625!4.77e-27!11;CL:0000624!1.67e-18!6;CL:0000838!5.59e-15!52;CL:0000542!1.31e-14!53;CL:0000051!1.31e-14!53;CL:0000898!1.01e-10!3;CL:0000842!2.78e-09!3;CL:0002087!1.37e-08!119;CL:0000815!9.28e-08!2;CL:0000792!9.28e-08!2;CL:0002677!9.28e-08!2;CL:0000224!4.56e-07!4 | |ontology_enrichment_celltype=CL:0000791!3.30e-41!18;CL:0000789!3.30e-41!18;CL:0002420!3.30e-41!18;CL:0002419!3.30e-41!18;CL:0000790!3.30e-41!18;CL:0000084!1.73e-28!25;CL:0000827!1.73e-28!25;CL:0000625!4.77e-27!11;CL:0000624!1.67e-18!6;CL:0000838!5.59e-15!52;CL:0000542!1.31e-14!53;CL:0000051!1.31e-14!53;CL:0000898!1.01e-10!3;CL:0000842!2.78e-09!3;CL:0002087!1.37e-08!119;CL:0000815!9.28e-08!2;CL:0000792!9.28e-08!2;CL:0002677!9.28e-08!2;CL:0000224!4.56e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.45e-27;18!CL:0000789;2.45e-27;18!CL:0002419;2.45e-27;18!CL:0000625;2.32e-20;11!CL:0000898;4.39e-20;3!CL:0000084;2.70e-19;25!CL:0000815;3.21e-14;2!CL:0000792;3.21e-14;2!CL:0002677;3.21e-14;2!CL:0000624;2.58e-10;6!CL:0000895;1.35e-07;1!CL:0000542;5.15e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.54e-27,18;CL:0000789,2.54e-27,18;CL:0002420,2.54e-27,18;CL:0002419,2.54e-27,18;CL:0000790,2.54e-27,18;CL:0000625,2.33e-20,11;CL:0000898,4.70e-20,3;CL:0000084,2.77e-19,25;CL:0000827,2.77e-19,25;CL:0000815,4.47e-14,2;CL:0000792,4.47e-14,2;CL:0002677,4.47e-14,2;CL:0000838,1.50e-10,52;CL:0000542,2.56e-10,53;CL:0000051,2.56e-10,53;CL:0000624,2.66e-10,6;CL:0000810,1.04e-07,1;CL:0000895,1.04e-07,1;CL:0002436,1.04e-07,1;CL:0002427,1.04e-07,1;CL:0002428,1.04e-07,1;CL:0002429,1.04e-07,1;CL:0002433,1.04e-07,1;CL:0002431,1.04e-07,1;CL:0002432,1.04e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000790;2.45e-27;18!CL:0002427;1.35e-07;1!UBERON:0005425;1.35e-07;1!CL:0000051;5.15e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.90e-18!15;UBERON:0000179!1.90e-18!15;UBERON:0000463!1.90e-18!15;UBERON:0004177!2.76e-11!7;UBERON:0006562!9.81e-10!11;UBERON:0002370!2.90e-08!4;UBERON:0005058!2.90e-08!4;UBERON:0009113!2.90e-08!4;UBERON:0003295!2.90e-08!4;UBERON:0005562!2.90e-08!4;UBERON:0001042!9.38e-08!10;UBERON:0009145!9.38e-08!10 | |ontology_enrichment_uberon=UBERON:0000178!1.90e-18!15;UBERON:0000179!1.90e-18!15;UBERON:0000463!1.90e-18!15;UBERON:0004177!2.76e-11!7;UBERON:0006562!9.81e-10!11;UBERON:0002370!2.90e-08!4;UBERON:0005058!2.90e-08!4;UBERON:0009113!2.90e-08!4;UBERON:0003295!2.90e-08!4;UBERON:0005562!2.90e-08!4;UBERON:0001042!9.38e-08!10;UBERON:0009145!9.38e-08!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.82e-14;2!UBERON:0005058;1.82e-14;2!UBERON:0009113;1.82e-14;2!UBERON:0000941;1.35e-07;1!UBERON:0001785;1.35e-07;1!UBERON:0002464;1.35e-07;1!UBERON:0004904;1.35e-07;1!UBERON:0001021;1.35e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.83e-15,4;UBERON:0005058,1.83e-15,4;UBERON:0009113,1.83e-15,4;UBERON:0003295,1.83e-15,4;UBERON:0005562,1.83e-15,4;UBERON:0003351,1.75e-10,6;UBERON:0004177,4.73e-09,7;UBERON:0005057,4.73e-09,7;UBERON:0000941,1.54e-07,1;UBERON:0001785,1.54e-07,1;UBERON:0002464,1.54e-07,1;UBERON:0004904,1.54e-07,1;UBERON:0001021,1.54e-07,1;UBERON:0003902,1.54e-07,1;UBERON:0005425,1.54e-07,1 | |||
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| ||
|short_description=p@chr14:22697561..22697584,+ | |short_description=p@chr14:22697561..22697584,+ | ||
}} | }} |
Latest revision as of 19:10, 24 July 2015
Short description: | p@chr14:22697561..22697584, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr14:22697561..22697584, + |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.54e-27 | 18 |
alpha-beta T cell | 2.54e-27 | 18 |
immature T cell | 2.54e-27 | 18 |
mature T cell | 2.54e-27 | 18 |
immature alpha-beta T cell | 2.54e-27 | 18 |
CD8-positive, alpha-beta T cell | 2.33e-20 | 11 |
naive T cell | 4.70e-20 | 3 |
T cell | 2.77e-19 | 25 |
pro-T cell | 2.77e-19 | 25 |
regulatory T cell | 4.47e-14 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.47e-14 | 2 |
naive regulatory T cell | 4.47e-14 | 2 |
lymphoid lineage restricted progenitor cell | 1.50e-10 | 52 |
lymphocyte | 2.56e-10 | 53 |
common lymphoid progenitor | 2.56e-10 | 53 |
CD4-positive, alpha-beta T cell | 2.66e-10 | 6 |
CD4-positive, alpha-beta thymocyte | 1.04e-07 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.04e-07 | 1 |
mature CD4 single-positive thymocyte | 1.04e-07 | 1 |
resting double-positive thymocyte | 1.04e-07 | 1 |
double-positive blast | 1.04e-07 | 1 |
CD69-positive double-positive thymocyte | 1.04e-07 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.04e-07 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.04e-07 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.04e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.83e-15 | 4 |
hemolymphoid system gland | 1.83e-15 | 4 |
thymic region | 1.83e-15 | 4 |
pharyngeal gland | 1.83e-15 | 4 |
thymus primordium | 1.83e-15 | 4 |
pharyngeal epithelium | 1.75e-10 | 6 |
hemopoietic organ | 4.73e-09 | 7 |
immune organ | 4.73e-09 | 7 |
cranial nerve II | 1.54e-07 | 1 |
cranial nerve | 1.54e-07 | 1 |
nerve trunk | 1.54e-07 | 1 |
nerve connecting eye with brain | 1.54e-07 | 1 |
nerve | 1.54e-07 | 1 |
retinal neural layer | 1.54e-07 | 1 |
presumptive neural retina | 1.54e-07 | 1 |