FFCP PHASE1:Hg19::chr4:55098129..55098159,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:55098129..55098159,+ | |||
|coexpression_cluster_id=C720 | |coexpression_cluster_id=C720 | ||
|description=CAGE_peak_at_chr4:55098129..55098159,+ | |description=CAGE_peak_at_chr4:55098129..55098159,+ | ||
|id=chr4:55098129..55098159,+ | |id=chr4:55098129..55098159,+ | ||
|ontology_enrichment_celltype=CL:0000055!8.85e-34!180;CL:0000057!2.72e-24!75;CL:0000680!4.70e-15!57;CL:0000056!4.70e-15!57;CL:0000355!4.70e-15!57;CL:0000187!8.18e-14!54;CL:0002620!3.03e-12!23;CL:0000393!7.97e-12!60;CL:0000211!7.97e-12!60;CL:0000183!2.81e-11!59;CL:0000192!1.70e-10!42;CL:0000514!1.70e-10!42;CL:0000359!5.66e-09!32;CL:0000048!7.68e-09!430;CL:0002334!2.85e-08!12;CL:0000723!4.58e-08!436;CL:0002494!7.48e-08!16;CL:0000034!1.06e-07!444 | |ontology_enrichment_celltype=CL:0000055!8.85e-34!180;CL:0000057!2.72e-24!75;CL:0000680!4.70e-15!57;CL:0000056!4.70e-15!57;CL:0000355!4.70e-15!57;CL:0000187!8.18e-14!54;CL:0002620!3.03e-12!23;CL:0000393!7.97e-12!60;CL:0000211!7.97e-12!60;CL:0000183!2.81e-11!59;CL:0000192!1.70e-10!42;CL:0000514!1.70e-10!42;CL:0000359!5.66e-09!32;CL:0000048!7.68e-09!430;CL:0002334!2.85e-08!12;CL:0000723!4.58e-08!436;CL:0002494!7.48e-08!16;CL:0000034!1.06e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.06e-15;23!CL:0000057;1.52e-12;73!CL:0002494;2.76e-11;16!CL:0002320;1.36e-09;188!CL:0000359;1.66e-09;32!CL:0000192;6.61e-09;43!CL:0002334;8.38e-09;12!CL:0000048;1.15e-07;58!CL:0000134;2.75e-07;55!CL:0002556;6.43e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.50e-33,76;CL:0000048,7.54e-22,427;CL:0000723,5.81e-21,433;CL:0000034,8.05e-20,441;CL:0002620,3.07e-15,23;CL:0002320,2.10e-13,361;CL:0000134,6.85e-12,354;CL:0002494,1.57e-11,16;CL:0000680,1.88e-11,58;CL:0000056,1.88e-11,58;CL:0000355,1.88e-11,58;CL:0000192,4.54e-11,43;CL:0000514,4.54e-11,43;CL:0000187,1.25e-10,55;CL:0000359,3.94e-10,32;CL:0000219,9.67e-09,386;CL:0000393,9.94e-09,61;CL:0000211,9.94e-09,61;CL:0002334,1.22e-08,12;CL:0002556,9.33e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000514;6.61e-09;43 | |||
|ontology_enrichment_disease=DOID:2394!1.28e-07!14 | |ontology_enrichment_disease=DOID:2394!1.28e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.28e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.63e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.64e-17!83;UBERON:0002329!5.64e-17!83;UBERON:0003077!5.64e-17!83;UBERON:0003059!5.64e-17!83;UBERON:0007282!5.64e-17!83;UBERON:0009618!5.64e-17!83;UBERON:0007285!5.64e-17!83;UBERON:0002385!2.51e-14!63;UBERON:0001015!2.51e-14!63;UBERON:0000383!2.51e-14!63;UBERON:0001134!2.98e-14!61;UBERON:0002036!2.98e-14!61;UBERON:0003082!2.98e-14!61;UBERON:0004290!6.78e-14!70;UBERON:0000475!1.85e-13!365;UBERON:0000486!8.14e-12!82;UBERON:0003102!2.83e-11!95;UBERON:0000948!3.00e-09!24;UBERON:0005498!3.00e-09!24;UBERON:0004140!3.00e-09!24;UBERON:0009881!3.00e-09!24;UBERON:0004141!3.00e-09!24;UBERON:0003084!3.00e-09!24;UBERON:0007005!3.00e-09!24;UBERON:0004139!3.00e-09!24;UBERON:0004291!3.00e-09!24;UBERON:0005256!1.12e-08!143;UBERON:0002100!2.18e-08!216;UBERON:0002199!1.32e-07!45;UBERON:0002416!1.32e-07!45;UBERON:0004872!1.63e-07!84;UBERON:0000481!2.23e-07!347;UBERON:0007100!2.36e-07!27;UBERON:0004457!2.76e-07!12;UBERON:0000042!2.76e-07!12 | |ontology_enrichment_uberon=UBERON:0000914!5.64e-17!83;UBERON:0002329!5.64e-17!83;UBERON:0003077!5.64e-17!83;UBERON:0003059!5.64e-17!83;UBERON:0007282!5.64e-17!83;UBERON:0009618!5.64e-17!83;UBERON:0007285!5.64e-17!83;UBERON:0002385!2.51e-14!63;UBERON:0001015!2.51e-14!63;UBERON:0000383!2.51e-14!63;UBERON:0001134!2.98e-14!61;UBERON:0002036!2.98e-14!61;UBERON:0003082!2.98e-14!61;UBERON:0004290!6.78e-14!70;UBERON:0000475!1.85e-13!365;UBERON:0000486!8.14e-12!82;UBERON:0003102!2.83e-11!95;UBERON:0000948!3.00e-09!24;UBERON:0005498!3.00e-09!24;UBERON:0004140!3.00e-09!24;UBERON:0009881!3.00e-09!24;UBERON:0004141!3.00e-09!24;UBERON:0003084!3.00e-09!24;UBERON:0007005!3.00e-09!24;UBERON:0004139!3.00e-09!24;UBERON:0004291!3.00e-09!24;UBERON:0005256!1.12e-08!143;UBERON:0002100!2.18e-08!216;UBERON:0002199!1.32e-07!45;UBERON:0002416!1.32e-07!45;UBERON:0004872!1.63e-07!84;UBERON:0000481!2.23e-07!347;UBERON:0007100!2.36e-07!27;UBERON:0004457!2.76e-07!12;UBERON:0000042!2.76e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.95e-09;9!UBERON:0000042;2.95e-09;9!UBERON:0004573;3.35e-09;33!UBERON:0004571;3.35e-09;33!UBERON:0003688;8.75e-09;6!UBERON:0002358;8.75e-09;6!UBERON:0003684;8.75e-09;6!UBERON:0001178;8.75e-09;6!UBERON:0002384;9.71e-09;198!UBERON:0000948;2.46e-08;22!UBERON:0000075;9.94e-08;16!UBERON:0001637;3.61e-07;42!UBERON:0003509;3.61e-07;42!UBERON:0004572;3.61e-07;42!UBERON:0002199;4.88e-07;46!UBERON:0002416;4.88e-07;46!UBERON:0001758;6.43e-07;6!UBERON:0003672;6.43e-07;6!UBERON:0000992;7.37e-07;13!UBERON:0007100;7.67e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.29e-13,371;UBERON:0003102,3.13e-13,99;UBERON:0007524,1.41e-10,73;UBERON:0004573,1.93e-10,33;UBERON:0004571,1.93e-10,33;UBERON:0002329,2.97e-10,71;UBERON:0003059,2.97e-10,71;UBERON:0007282,2.97e-10,71;UBERON:0004290,2.97e-10,71;UBERON:0009618,2.97e-10,71;UBERON:0001134,4.22e-10,62;UBERON:0002036,4.22e-10,62;UBERON:0003082,4.22e-10,62;UBERON:0003077,5.71e-10,72;UBERON:0007285,5.71e-10,72;UBERON:0000948,1.08e-09,24;UBERON:0005498,1.08e-09,24;UBERON:0004140,1.08e-09,24;UBERON:0009881,1.08e-09,24;UBERON:0004141,1.08e-09,24;UBERON:0003084,1.08e-09,24;UBERON:0007005,1.08e-09,24;UBERON:0004139,1.08e-09,24;UBERON:0004291,1.08e-09,24;UBERON:0004872,1.24e-09,83;UBERON:0002385,1.69e-09,64;UBERON:0001015,1.69e-09,64;UBERON:0000383,1.69e-09,64;UBERON:0002199,2.87e-09,46;UBERON:0002416,2.87e-09,46;UBERON:0004457,3.94e-09,12;UBERON:0000042,3.94e-09,12;UBERON:0000486,8.17e-09,83;UBERON:0003688,1.01e-08,6;UBERON:0002358,1.01e-08,6;UBERON:0003684,1.01e-08,6;UBERON:0001178,1.01e-08,6;UBERON:0001637,1.85e-08,42;UBERON:0003509,1.85e-08,42;UBERON:0004572,1.85e-08,42;UBERON:0007503,1.91e-08,78;UBERON:0002097,2.13e-08,41;UBERON:0007100,4.50e-08,27;UBERON:0000075,1.81e-07,16;UBERON:0000992,6.73e-07,13;UBERON:0001758,9.33e-07,6;UBERON:0003672,9.33e-07,6 | |||
|phase1_expression=3.63356758541113,4.49611100171065,7.18867460889453,5.00366491765652,8.49226079411847,6.10636966870258,2.53299878168311,1.89515962028049,1.56711376919903,0.245733936501509,0,0,0,1.48519623552056,2.65117900582333,0,0,0.730310090387373,0,0,0.204000691244253,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,3.35350429851818,2.55725123687061,6.14446559053763,2.00535164254356,2.89693037921647,3.1811437882044,5.35298357332899,0.0945348171640679,0.221729397462564,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,7.45457927542978,2.40597972162702,5.69359477496841,13.4813211751942,1.41867352879343,2.24271040056923,0,0,2.48968828319813,2.55950276932407,3.10577615915572,1.51357427644931,2.30470369792,0.468642863667593,1.24864030732128,0,0.747243402759005,1.52664848236894,1.29498355494505,1.40450806702248,3.47062091133319,1.35117749042945,2.6864703105699,4.75201142912821,4.45080472701402,0,0,1.0100166837244,1.87677779807946,3.04770527032601,3.07284334616587,4.90380473278431,4.05642759047811,1.02088964844019,6.45802688479903,1.06778694409284,1.27159140695737,4.50136644126603,3.60683852334536,6.1833729610951,2.41951913231067,9.28269827326964,5.74878330451072,4.54380793639406,2.57739716198438,3.87950536365149,7.10019185033229,3.32481924151213,1.3564847384839,0,0,0,0,0.132529768321485,0.348581828608555,0.10366105501537,0,0,0,0,0,0.928735856063958,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0.325808305310325,0,0,0.115930404975077,0.70445216541493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0.381988425558278,0,0,0.102827492703324,0,0,0.784917590417525,0.87192013766656,0.5867062865676,1.03417372606222,3.57656445851882,0,3.98907174877306,1.04007436911366,0,0,0,3.71742783511184,2.17048642156577,0,0.977208552881205,1.42156779497018,0,3.01439377059586,1.74306691720059,0.699810938274399,0,0,0,1.91699884393266,2.29723871668228,4.27910715122155,2.17171960001369,2.67119219315498,0.716243852959582,0,0,0,0,2.54094624222463,0,0,0,0,0,0,0,2.20844685094452,1.00034104211935,2.17012018959788,3.53550464602372,2.85486382075459,2.52323864054295,4.09994952474496,1.80567659836631,0,0,1.99267679560631,1.29058417979192,2.34585759063824,0,0,0,0,0,0,0,0,3.72161711728165,7.05925077125087,4.49056151092918,7.68834895534206,4.60536524160033,3.05622450172854,8.90508398669946,0.925258162815933,0.887808626565635,1.14978018419333,1.03850885836724,1.62694529843943,0.120859449591622,0,0,1.14814448164607,1.0925470080403,1.31124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0.386682873168488,0.154048617114644,0.460511024178389,0.551346289938122,0.537101224341368,0.580066775656914,0.511359764496605,0.356128142586949,0,0,0,0,0,16.3702420351933,4.8792608911242,3.08033580176089,1.06461206063404,0,2.03856641014312,3.43499728180779,0.372158369359667,1.89827654831236,1.71567174531442,0.255897791311334,0.42793898803392,4.13664222303718,1.56989728039846,2.15846949099978,1.37268514868027,1.06031162111118,1.61745985258653,4.75530963519025,1.68503382495592,0.48763373908959,2.43713489631284,5.28250733783777,2.72999822815972,1.97967604735198,2.26016233240486,2.2054613741845,3.3171948762061,3.5076070820301,0,1.31178950409327,0.405820753925408,0.30982349809975,0.281695602532241,1.72093622644862,1.17898849215745,0,0,2.53329162357197,4.28083360847872,0,1.04980416073495,0,0,0,0.564862804660675,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0.28853842595289,0,0,0,1.91505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0.140669416410513,1.66963057534359,0,0,2.39097585901284,0.828851746593443,0,0,0,3.11039587661807,0,0,0,0.986434056369336,0,3.33410970433911,0,0.185536196323703,0,0,0,2.17499872630438,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0,0,1.23120413606075,2.50672522863403,0,0.0897576444097721,0.217294743844016,0.638002319463839,2.56473261525214,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0.530745387020035,0,0,0,0,0.337005664903385,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0.821425535170343,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,2.42472541221049,0.264768380074501,0.451961481561065,0,0.397429223405979,0.379864775735272,0.195551382734803,0,0.640358984218058,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.558564802544508,0.916641696046735,0.717873024576814,0,0,0,0.604651252380536,1.80149941771202,0,0,0,0,0,0,0,0.408610218334727,0.160753148465019,0.137539436597234,0,0,0,0.242998226632099,0,0.86686278029118,1.31136470337495,0,0,0,2.85878130549347,0,0.76280561296425,0.542999601753713,0,0.326587360109409,0,0,0,0.566560457600628,0.146552233678082,1.32506888912221,0.387848869084652,0.661163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| ||
|short_description=p@chr4:55098129..55098159,+ | |short_description=p@chr4:55098129..55098159,+ | ||
}} | }} |
Latest revision as of 05:40, 30 July 2015
Short description: | p@chr4:55098129..55098159, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:55098129..55098159, + |
Coexpression cluster: | C720_Smooth_Fibroblast_Preadipocyte_Sertoli_Ewing_hepatic_Synoviocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.50e-33 | 76 |
multi fate stem cell | 7.54e-22 | 427 |
somatic stem cell | 5.81e-21 | 433 |
stem cell | 8.05e-20 | 441 |
skin fibroblast | 3.07e-15 | 23 |
connective tissue cell | 2.10e-13 | 361 |
mesenchymal cell | 6.85e-12 | 354 |
cardiocyte | 1.57e-11 | 16 |
muscle precursor cell | 1.88e-11 | 58 |
myoblast | 1.88e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.88e-11 | 58 |
smooth muscle cell | 4.54e-11 | 43 |
smooth muscle myoblast | 4.54e-11 | 43 |
muscle cell | 1.25e-10 | 55 |
vascular associated smooth muscle cell | 3.94e-10 | 32 |
motile cell | 9.67e-09 | 386 |
electrically responsive cell | 9.94e-09 | 61 |
electrically active cell | 9.94e-09 | 61 |
preadipocyte | 1.22e-08 | 12 |
fibroblast of periodontium | 9.33e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.63e-10 | 14 |