FF:10201-103F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005681 | ||
|accession_numbers=CAGE;DRX008718;DRR009590;DRZ001015;DRZ002400;DRZ012365;DRZ013750 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000473,UBERON:0000998,UBERON:0000991,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0006868,UBERON:0005904,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0002530,UBERON:0004175,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010201 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.94!873.45!GATA2;;chr11:34642612..34642646,+!p1@EHF!2.59!385.28!EHF;;chr11:34645791..34645836,+!p3@EHF!2.41!257.42!EHF;;chr12:115122318..115122331,-!p2@TBX3!2.28!188.41!TBX3;;chr10:8096631..8096660,+!p1@GATA3!2.23!201.53!GATA3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.18!149.46!POU3F3;;chr10:119301928..119301955,+!p7@EMX2!2.12!131.67!EMX2;;chr11:34535297..34535317,-!p1@ELF5!2.12!129.98!ELF5;;chr9:102584159..102584174,+!p2@NR4A3!2.05!192.64!NR4A3;;chr12:52445218..52445237,+!p1@NR4A1!2.00!1176.59!NR4A1;;chr17:46682321..46682362,-!p1@HOXB6!1.95!88.91!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.94!85.95!ELF5;;chr2:157189180..157189290,-!p1@NR4A2!1.88!373.85!NR4A2;;chr17:46675558..46675577,-!p2@HOXB6!1.87!72.40!HOXB6;;chr11:34642656..34642667,+!p2@EHF!1.85!69.86!EHF;;chr10:119302232..119302265,+!p1@EMX2!1.83!66.05!EMX2;;chr1:151804244..151804310,-!p1@RORC!1.83!66.05!RORC;;chr12:115122303..115122314,-!p6@TBX3!1.81!63.08!TBX3;;chr9:77112244..77112262,+!p1@RORB!1.79!67.32!RORB;;chr16:54320617..54320643,-!p3@IRX3!1.77!74.09!IRX3;;chr6:134210243..134210257,+!p1@TCF21!1.77!58.43!TCF21;;chr11:34535276..34535287,-!p3@ELF5!1.69!48.27!ELF5;;chr1:209979467..209979494,-!p1@IRF6!1.65!48.69!IRF6;;chr17:46692457..46692484,-!p2@HOXB8!1.65!43.19!HOXB8;;chr8:102504651..102504683,+!p1@GRHL2!1.65!43.19!GRHL2;;chr17:80797886..80797906,-!p1@ZNF750!1.62!40.22!ZNF750;;chr16:54320646..54320672,-!p2@IRX3!1.61!59.70!IRX3;;chr20:51588873..51588953,+!p1@TSHZ2!1.60!51.23!TSHZ2;;chr2:114036488..114036504,-!p1@PAX8!1.59!37.68!PAX8;;chr10:119302352..119302362,+!p9@EMX2!1.57!36.41!EMX2;;chr12:115122224..115122233,-!p12@TBX3!1.57!35.99!TBX3;;chr4:81118647..81118666,+!p1@PRDM8!1.54!43.61!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!1.54!33.45!IRF8;;chr11:113930425..113930471,+!p1@ZBTB16!1.52!45.73!ZBTB16;;chr19:54058073..54058088,+!p1@ZNF331!1.52!32.18!ZNF331;;chr17:46667594..46667619,-!p1@HOXB3!1.52!31.75!HOXB3;;chr3:169381420..169381535,-!p1@MECOM!1.51!36.41!MECOM;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.33!HIF3A;;chr2:177001290..177001315,+!p1@HOXD3!1.49!30.06!HOXD3;;chr17:46667628..46667642,-!p2@HOXB3!1.48!29.21!HOXB3;;chr12:52437488..52437507,+!p2@NR4A1!1.48!29.21!NR4A1;;chr14:105935396..105935413,+!p4@MTA1!1.47!28.79!MTA1;;chr10:119302150..119302163,+!p8@EMX2!1.44!26.67!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.44!26.25!PAX2;;chr10:119302645..119302712,+!p3@EMX2!1.44!26.25!EMX2;;chr3:128206762..128206781,-!p2@GATA2!1.43!155.81!GATA2;;chr1:201979743..201979762,+!p1@ELF3!1.43!25.83!ELF3;;chrX:66763856..66763896,+!p1@AR!1.42!35.99!AR;;chr12:115122297..115122302,-!p15@TBX3!1.42!25.40!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!1.42!25.40!HOXD8;;chr10:119302268..119302282,+!p4@EMX2!1.41!24.56!EMX2;;chr5:50679228..50679288,+!p1@ISL1!1.41!24.56!ISL1;;chr9:4300050..4300118,-!p1@GLIS3!1.40!153.27!GLIS3;;chr10:8096772..8096787,+!p2@GATA3!1.40!28.37!GATA3;;chr7:97840743..97840786,+!p1@BHLHA15!1.40!24.13!BHLHA15;;chr9:102584262..102584276,+!p1@NR4A3!1.39!52.08!NR4A3;;chr17:45928521..45928539,-!p1@SP6!1.39!23.29!SP6;;chr2:177053386..177053402,+!p1@HOXD1!1.38!22.86!HOXD1;;chr22:41763452..41763466,+!p2@TEF!1.37!22.44!TEF;;chr12:115122262..115122271,-!p7@TBX3!1.37!22.44!TBX3;;chr17:59477233..59477263,+!p1@TBX2!1.36!66.47!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!1.36!22.02!KDM5D;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.14!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.35!24.98!GATA3;;chr14:105935426..105935440,+!p9@MTA1!1.35!21.59!MTA1;;chr7:138666053..138666146,-!p1@KIAA1549!1.34!85.10!KIAA1549;;chr10:119302508..119302559,+!p5@EMX2!1.34!20.75!EMX2;;chr10:119302182..119302196,+!p6@EMX2!1.33!20.32!EMX2;;chr19:20188776..20188826,+!p1@ZNF90!1.32!52.50!ZNF90;;chr14:75745523..75745537,+!p1@FOS!1.30!2201.61!FOS;;chr8:77593474..77593612,+!p1@ZFHX4!1.28!74.52!ZFHX4;;chr1:2985760..2985774,+!p1@PRDM16!1.28!18.21!PRDM16;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.29!SOX18;;chr1:40105299..40105326,-!p1@HEYL!1.27!17.78!HEYL;;chr17:46675539..46675551,-!p7@HOXB6!1.27!17.78!HOXB6;;chr11:113930401..113930422,+!p3@ZBTB16!1.27!17.78!ZBTB16;;chr1:212782094..212782109,+!p1@ATF3!1.26!452.18!ATF3;;chr16:54320675..54320715,-!p1@IRX3!1.25!35.56!IRX3;;chr1:40367668..40367684,-!p2@MYCL1!1.25!16.94!MYCL1;;chr16:54320101..54320125,-!p4@IRX3!1.23!22.86!IRX3;;chr12:115122005..115122016,-!p3@TBX3!1.23!19.05!TBX3;;chr12:52448213..52448262,+!p6@NR4A1!1.23!16.09!NR4A1;;chr6:19837592..19837621,+!p1@ID4!1.22!93.57!ID4;;chr9:4299979..4299996,-!p3@GLIS3!1.22!25.40!GLIS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.67!POU3F3;;chr3:18466787..18466839,-!p1@SATB1!1.21!66.90!SATB1;;chr11:113930291..113930339,+!p2@ZBTB16!1.21!24.56!ZBTB16;;chr17:46675420..46675465,-!p3@HOXB6!1.21!17.36!HOXB6;;chr11:34643148..34643157,+!p16@EHF!1.21!15.24!EHF;;chr3:114819124..114819200,-!p3@ZBTB20!1.20!34.29!ZBTB20;;chr9:4299959..4299974,-!p4@GLIS3!1.20!23.29!GLIS3;;chr11:34663654..34663663,+!p17@EHF!1.20!14.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| |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.94!873.45!GATA2;;chr11:34642612..34642646,+!p1@EHF!2.59!385.28!EHF;;chr11:34645791..34645836,+!p3@EHF!2.41!257.42!EHF;;chr12:115122318..115122331,-!p2@TBX3!2.28!188.41!TBX3;;chr10:8096631..8096660,+!p1@GATA3!2.23!201.53!GATA3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.18!149.46!POU3F3;;chr10:119301928..119301955,+!p7@EMX2!2.12!131.67!EMX2;;chr11:34535297..34535317,-!p1@ELF5!2.12!129.98!ELF5;;chr9:102584159..102584174,+!p2@NR4A3!2.05!192.64!NR4A3;;chr12:52445218..52445237,+!p1@NR4A1!2.00!1176.59!NR4A1;;chr17:46682321..46682362,-!p1@HOXB6!1.95!88.91!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.94!85.95!ELF5;;chr2:157189180..157189290,-!p1@NR4A2!1.88!373.85!NR4A2;;chr17:46675558..46675577,-!p2@HOXB6!1.87!72.40!HOXB6;;chr11:34642656..34642667,+!p2@EHF!1.85!69.86!EHF;;chr10:119302232..119302265,+!p1@EMX2!1.83!66.05!EMX2;;chr1:151804244..151804310,-!p1@RORC!1.83!66.05!RORC;;chr12:115122303..115122314,-!p6@TBX3!1.81!63.08!TBX3;;chr9:77112244..77112262,+!p1@RORB!1.79!67.32!RORB;;chr16:54320617..54320643,-!p3@IRX3!1.77!74.09!IRX3;;chr6:134210243..134210257,+!p1@TCF21!1.77!58.43!TCF21;;chr11:34535276..34535287,-!p3@ELF5!1.69!48.27!ELF5;;chr1:209979467..209979494,-!p1@IRF6!1.65!48.69!IRF6;;chr17:46692457..46692484,-!p2@HOXB8!1.65!43.19!HOXB8;;chr8:102504651..102504683,+!p1@GRHL2!1.65!43.19!GRHL2;;chr17:80797886..80797906,-!p1@ZNF750!1.62!40.22!ZNF750;;chr16:54320646..54320672,-!p2@IRX3!1.61!59.70!IRX3;;chr20:51588873..51588953,+!p1@TSHZ2!1.60!51.23!TSHZ2;;chr2:114036488..114036504,-!p1@PAX8!1.59!37.68!PAX8;;chr10:119302352..119302362,+!p9@EMX2!1.57!36.41!EMX2;;chr12:115122224..115122233,-!p12@TBX3!1.57!35.99!TBX3;;chr4:81118647..81118666,+!p1@PRDM8!1.54!43.61!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!1.54!33.45!IRF8;;chr11:113930425..113930471,+!p1@ZBTB16!1.52!45.73!ZBTB16;;chr19:54058073..54058088,+!p1@ZNF331!1.52!32.18!ZNF331;;chr17:46667594..46667619,-!p1@HOXB3!1.52!31.75!HOXB3;;chr3:169381420..169381535,-!p1@MECOM!1.51!36.41!MECOM;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.33!HIF3A;;chr2:177001290..177001315,+!p1@HOXD3!1.49!30.06!HOXD3;;chr17:46667628..46667642,-!p2@HOXB3!1.48!29.21!HOXB3;;chr12:52437488..52437507,+!p2@NR4A1!1.48!29.21!NR4A1;;chr14:105935396..105935413,+!p4@MTA1!1.47!28.79!MTA1;;chr10:119302150..119302163,+!p8@EMX2!1.44!26.67!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.44!26.25!PAX2;;chr10:119302645..119302712,+!p3@EMX2!1.44!26.25!EMX2;;chr3:128206762..128206781,-!p2@GATA2!1.43!155.81!GATA2;;chr1:201979743..201979762,+!p1@ELF3!1.43!25.83!ELF3;;chrX:66763856..66763896,+!p1@AR!1.42!35.99!AR;;chr12:115122297..115122302,-!p15@TBX3!1.42!25.40!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!1.42!25.40!HOXD8;;chr10:119302268..119302282,+!p4@EMX2!1.41!24.56!EMX2;;chr5:50679228..50679288,+!p1@ISL1!1.41!24.56!ISL1;;chr9:4300050..4300118,-!p1@GLIS3!1.40!153.27!GLIS3;;chr10:8096772..8096787,+!p2@GATA3!1.40!28.37!GATA3;;chr7:97840743..97840786,+!p1@BHLHA15!1.40!24.13!BHLHA15;;chr9:102584262..102584276,+!p1@NR4A3!1.39!52.08!NR4A3;;chr17:45928521..45928539,-!p1@SP6!1.39!23.29!SP6;;chr2:177053386..177053402,+!p1@HOXD1!1.38!22.86!HOXD1;;chr22:41763452..41763466,+!p2@TEF!1.37!22.44!TEF;;chr12:115122262..115122271,-!p7@TBX3!1.37!22.44!TBX3;;chr17:59477233..59477263,+!p1@TBX2!1.36!66.47!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!1.36!22.02!KDM5D;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.14!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.35!24.98!GATA3;;chr14:105935426..105935440,+!p9@MTA1!1.35!21.59!MTA1;;chr7:138666053..138666146,-!p1@KIAA1549!1.34!85.10!KIAA1549;;chr10:119302508..119302559,+!p5@EMX2!1.34!20.75!EMX2;;chr10:119302182..119302196,+!p6@EMX2!1.33!20.32!EMX2;;chr19:20188776..20188826,+!p1@ZNF90!1.32!52.50!ZNF90;;chr14:75745523..75745537,+!p1@FOS!1.30!2201.61!FOS;;chr8:77593474..77593612,+!p1@ZFHX4!1.28!74.52!ZFHX4;;chr1:2985760..2985774,+!p1@PRDM16!1.28!18.21!PRDM16;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.29!SOX18;;chr1:40105299..40105326,-!p1@HEYL!1.27!17.78!HEYL;;chr17:46675539..46675551,-!p7@HOXB6!1.27!17.78!HOXB6;;chr11:113930401..113930422,+!p3@ZBTB16!1.27!17.78!ZBTB16;;chr1:212782094..212782109,+!p1@ATF3!1.26!452.18!ATF3;;chr16:54320675..54320715,-!p1@IRX3!1.25!35.56!IRX3;;chr1:40367668..40367684,-!p2@MYCL1!1.25!16.94!MYCL1;;chr16:54320101..54320125,-!p4@IRX3!1.23!22.86!IRX3;;chr12:115122005..115122016,-!p3@TBX3!1.23!19.05!TBX3;;chr12:52448213..52448262,+!p6@NR4A1!1.23!16.09!NR4A1;;chr6:19837592..19837621,+!p1@ID4!1.22!93.57!ID4;;chr9:4299979..4299996,-!p3@GLIS3!1.22!25.40!GLIS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.67!POU3F3;;chr3:18466787..18466839,-!p1@SATB1!1.21!66.90!SATB1;;chr11:113930291..113930339,+!p2@ZBTB16!1.21!24.56!ZBTB16;;chr17:46675420..46675465,-!p3@HOXB6!1.21!17.36!HOXB6;;chr11:34643148..34643157,+!p16@EHF!1.21!15.24!EHF;;chr3:114819124..114819200,-!p3@ZBTB20!1.20!34.29!ZBTB20;;chr9:4299959..4299974,-!p4@GLIS3!1.20!23.29!GLIS3;;chr11:34663654..34663663,+!p17@EHF!1.20!14.82!EHF;;chr12:52448151..52448200,+!p8@NR4A1!1.20!14.82!NR4A1;;chr13:72441315..72441454,-!p1@DACH1!1.19!28.79!DACH1;;chr8:102504979..102505010,+!p2@GRHL2!1.19!14.40!GRHL2;;chr17:46692624..46692659,-!p3@HOXB8!1.18!13.97!HOXB8;;chr1:61547894..61547968,+!p2@NFIA!1.16!38.95!NFIA;;chr15:96869255..96869291,+!p6@NR2F2!1.16!24.56!NR2F2;;chr9:102584241..102584261,+!p4@NR4A3!1.16!20.75!NR4A3;;chr3:114819101..114819121,-!p7@ZBTB20!1.16!13.55!ZBTB20;;chr17:46671504..46671541,-!p2@HOXB5!1.16!13.55!HOXB5;;chr3:39195037..39195069,-!p2@CSRNP1!1.15!80.87!CSRNP1;;chr9:14314131..14314147,-!p2@NFIB!1.15!72.40!NFIB;;chr3:18486354..18486377,-!p2@SATB1!1.15!16.51!SATB1;;chr22:31739411..31739446,-!p5@PATZ1!1.15!13.12!PATZ1;;chr12:52448420..52448460,+!p5@NR4A1!1.15!13.12!NR4A1;;chr21:39870339..39870443,-!p1@ERG!1.15!13.12!ERG;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.67!TFAP2A;;chr12:52448293..52448318,+!p10@NR4A1!1.14!12.70!NR4A1;;chr1:170633348..170633399,+!p2@PRRX1!1.12!16.51!PRRX1;;chr14:75746722..75746777,+!p2@FOS!1.12!15.67!FOS;;chr12:52448338..52448401,+!p7@NR4A1!1.12!12.28!NR4A1;;chr20:51589133..51589159,+!p2@TSHZ2!1.12!12.28!TSHZ2;;chr22:29196433..29196445,-!p4@XBP1!1.11!13.12!XBP1;;chr12:115121802..115121814,-!p5@TBX3!1.11!11.85!TBX3;;chr7:44143925..44143970,+!p1@AEBP1!1.10!256.15!AEBP1;;chr9:102584128..102584144,+!p3@NR4A3!1.10!22.02!NR4A3;;chr16:54319010..54319041,-!p8@IRX3!1.09!11.43!IRX3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.09!11.43!LHX1;;chr1:61548225..61548299,+!p1@NFIA!1.08!143.10!NFIA;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!1.08!72.82!ZNF580;;chr12:104531823..104531849,-!p5@NFYB!1.08!23.29!NFYB;;chr17:59477197..59477212,+!p2@TBX2!1.08!19.05!TBX2;;chr1:10754477..10754517,-!p1@CASZ1!1.08!18.63!CASZ1;;chr7:27192185..27192209,-!p1@HOXA3!1.08!11.01!HOXA3;;chr2:177016336..177016350,+!p1@HOXD4!1.08!11.01!HOXD4;;chr3:189507432..189507459,+!p1@TP63!1.08!11.01!TP63;;chr6:10412392..10412409,-!p4@TFAP2A!1.07!12.28!TFAP2A;;chr22:38597987..38598021,+!p2@MAFF!1.06!65.20!MAFF;;chrX:66763815..66763854,+!p2@AR!1.06!13.97!AR;;chr10:77161504..77161530,-!p1@ZNF503!1.05!137.60!ZNF503;;chr17:38256822..38256851,-!p1@NR1D1!1.05!80.44!NR1D1;;chr16:54320322..54320343,-!p7@IRX3!1.05!10.16!IRX3;;chrX:66763914..66763933,+!p3@AR!1.05!10.16!AR;;chr1:170633058..170633084,+!p5@PRRX1!1.05!10.16!PRRX1;;chr2:157186630..157186686,-!p6@NR4A2!1.05!10.16!NR4A2;;chr20:30193083..30193098,+!p1@ID1!1.04!805.71!ID1;;chr3:193853927..193853944,+!p1@HES1!1.04!326.01!HES1;;chr22:29196492..29196503,-!p3@XBP1!1.04!15.67!XBP1;;chr16:54320158..54320200,-!p5@IRX3!1.04!14.40!IRX3;;chr5:92919100..92919135,+!p3@NR2F1!1.04!12.28!NR2F1;;chr3:24536253..24536328,-!p1@THRB!1.03!18.63!THRB;;chr9:4300016..4300039,-!p2@GLIS3!1.03!16.94!GLIS3;;chr4:174451370..174451387,-!p1@HAND2!1.03!9.74!HAND2;;chr10:119303078..119303169,+!p2@EMX2!1.03!9.74!EMX2;;chr13:37494275..37494304,-!p2@SMAD9!1.03!9.74!SMAD9;;chr19:45971246..45971265,+!p1@FOSB!1.02!179.52!FOSB;;chr17:17726907..17726958,-!p2@SREBF1!1.02!60.12!SREBF1;;chr17:46621937..46621966,-!p2@HOXB2!1.02!26.25!HOXB2;;chr7:44143978..44143989,+!p2@AEBP1!1.02!17.78!AEBP1;;chr15:96869222..96869251,+!p18@NR2F2!1.01!11.01!NR2F2;;chr17:46675586..46675600,-!p6@HOXB6!1.01!9.31!HOXB6;;chrX:66764343..66764362,+!p4@AR!1.01!9.31!AR;;chr10:102505327..102505344,+!p1@PAX2!1.01!9.31!PAX2;;chr11:34645764..34645775,+!p9@EHF!1.01!9.31!EHF;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.01!9.31!PEG3;;chr1:10856665..10856683,-!p4@CASZ1!1.01!9.31!CASZ1;;chr1:201979703..201979721,+!p2@ELF3!1.01!9.31!ELF3;;chr20:18038521..18038571,-!p1@OVOL2!1.01!9.31!OVOL2;;chr3:128205876..128205904,-!p4@GATA2!1.01!9.31!GATA2;;chr9:14314566..14314618,-!p1@NFIB!1.00!110.08!NFIB;;chr17:70117153..70117174,+!p1@SOX9!1.00!93.57!SOX9;;chr7:27239703..27239715,-!p1@HOXA13!1.00!8.89!HOXA13;;chr22:38380543..38380569,-!p1@SOX10!1.00!8.89!SOX10;;chr3:128205779..128205797,-!p5@GATA2!1.00!8.89!GATA2;;chr19:54041669..54041697,+!p2@ZNF331!1.00!8.89!ZNF331;;chr3:126076242..126076257,-!p1@KLF15!0.99!11.01!KLF15;;chr1:170633262..170633285,+!p3@PRRX1!0.99!10.16!PRRX1;;chr9:114287433..114287513,+!p1@ZNF483!0.98!22.86!ZNF483;;chr17:46687959..46688007,-!p2@HOXB7!0.98!11.85!HOXB7;;chr8:77593448..77593471,+!p2@ZFHX4!0.98!8.47!ZFHX4;;chr14:105935576..105935594,+!p11@MTA1!0.98!8.47!MTA1;;chr15:96873984..96873999,+!p3@NR2F2!0.97!62.24!NR2F2;;chr17:7492684..7492778,-!p2@SOX15!0.97!17.78!SOX15;;chrX:152599604..152599626,+!p1@ZNF275!0.96!64.35!ZNF275;;chrX:101186981..101187030,-!p1@ZMAT1!0.96!27.52!ZMAT1;;chr5:158526917..158526932,-!p1@EBF1!0.96!20.75!EBF1;;chr17:59477275..59477286,+!p3@TBX2!0.96!11.01!TBX2;;chr17:53342311..53342400,+!p1@HLF!0.96!9.31!HLF;;chr8:55370487..55370503,+!p1@SOX17!0.96!8.04!SOX17;;chr11:34533257..34533273,-!p4@ELF5!0.96!8.04!ELF5;;chr12:115121770..115121781,-!p4@TBX3!0.96!8.04!TBX3;;chr3:128207349..128207386,-!p3@GATA2!0.96!8.04!GATA2;;chr7:128577972..128578047,+!p1@IRF5!0.95!12.70!IRF5;;chr15:60884706..60884743,-!p1@RORA!0.94!41.07!RORA;;chr3:114866084..114866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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006947 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0003918,UBERON:0005754,UBERON:0007687,UBERON:0007297,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10201-103F3 | |id=FF:10201-103F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010201 | ||
|is_obsolete= | |||
|library_id=CNhs12851 | |||
|library_id_phase_based=2:CNhs12851 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10201 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10201 | |||
|name=seminal vesicle, adult | |name=seminal vesicle, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12851,LSID973,release012,COMPLETED | |profile_hcage=CNhs12851,LSID973,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.153323010348428,0.133206887634127,0,0,0,0,0.481859147557998,0,1.48406849810638,0.195785214551368,0,0,0,0.153323010348428,0,0,0,0,0.153323010348428,0,0,0,0,0,0,0.076661505174214,0,0,0,-0.0979578962680575,0,0,0.0203664205695654,0,0,0,0,0,0,0,0.153323010348428,0,0,0,0,0.934087314868051,0.153323010348428,0,0,0,0,0,0,0,0.0524464840613795,0,0.0125796330910479,0,0.266413775268255,0,0.0665545113476988,0,0.0563306491058225,0,0,0.0559793831353307,0.153323010348428,0,0,0,0,0,0,0,0.153323010348428,0,0,0,0,0,0,0,0.0147186578292792,0.153323010348428,0,0,0.153323010348428,0,0,0.0347132431435354,0.0624054010353079,0.802798987707027,0,0.137210724889166,-0.0584468268118252,0.298312460370844,0.076661505174214,0,0,0,0.332289400368198,0.416056093114931,0,0,0,0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0197120887482472,0.153323010348428,0,0,1.04596005682368,1.15463919429411,0,0,0,0.153323010348428,0,0 | |||
|repeat_enrich_byname=0.108396481981339,0,0,0,0.332289400368198,0,0,0,0,0,1.17527322380815,0.430324751605904,0.153323010348428,0,0,0,-0.0938558649371368,0.076661505174214,0.309863402030447,0.00980786782495574,0.076661505174214,0,0.0608440975969145,0,0.549042800793424,0,0.208288876484954,0.75260595086517,0,0.75260595086517,0.890655307103648,0,-0.128119866952565,0,0.54768924968846,0.0941042651629255,0,0.153323010348428,0,0,-0.305472230898407,0.153323010348428,0.124792839489378,0.650478711907051,0,0,0,0.153323010348428,0.0215832116428417,0,0.145534291474514,0.0706028420250103,0.49372778063899,0.229293946341194,0.0976105135672456,0,0,0,-0.119279417886638,0.0293354480634289,0,0,-0.0451183465776601,0.42578756763352,0,0,1.17701508463826,0,-0.117422462835272,0.110622592153505,0,0,0,0,0.266413775268255,0,0,0,0,0,0,0,0,0.548781909990268,0.425617354186201,0.0131387364855274,0.153323010348428,0.49372778063899,0.155576162547488,0.505171279262007,0,0.064256935292924,-0.106872380688312,0.0633269797189602,0,0.0520511883661703,0.00933393208243508,0.510792919116206,0.140265229630536,0.057073283040851,-0.064890662610581,0.00592116097728909,0.359061081243577,0,0.152749960185478,0.0542988086693549,0.0851457971620055,-0.0193493382524625,0.061246929597959,0.10597018558883,0.488166912388836,0,0.549042800793424,0.0276750685255217,0.191233763019192,0.0794729858868928,0.020548686612035,0.00361306616221702,0.0970853433710084,0.153723155950796,-0.00238396973393401,0.0171576073982122,-0.106939767360418,1.19108216271973,0.408898493649235,0.148292044776673,0.153001537391462,0,0.153323010348428,0.153323010348428,-0.0321302083069183,0.261802254348995,-0.462503162830252,0,0.429708194046445,-0.0683442610773682,0,0.198834418561552,-0.063408974346002,0,0,0.0193245704063633,0,0,0.153323010348428,0.141245099889148,0.813182646126119,-0.0934141123031085,0.975772583053462,-0.232855561555545,0.0587654805458385,0.0433750521865855,0,0.0238025084696057,0,0.0223902731477035,0.0642430136574496,0.0579825349289245,-0.0347127216174152,0.0904385942110044,0.083875129121154,0.0872877518343419,0.101423078929252,-0.155981030123482,-0.0584468268118252,0.264773890652014,0.28686517267742,-0.151278399809178,0.241979577489115,0.068045404683214,0.695822788307167,0.250494591108962,0.708685701873484,0.186836814924305,0.0500593771155005,-0.0938461280299074,0,0.379052733335717,0,0.117511241208788,0,0.167748230789447,0.00860904932018436,0.86287735842489,0.168911420126514,0.0360952118539987,0.0909662997138226,0.976472937951566,0,0,0.130473999676506,0.266413775268255,0.0029559270137883,0.489688232039285,0.769049580792283,0.29326833159382,0,0.100575148713991,0,0.266413775268255,-0.113466596028035,0.548473583018066,0.153323010348428,-0.0569959483755787,0.527568735197486,0.262118905350535,-0.115971073434934,0,0,0.367748478172971,0.056280345357595,0.356056687290217,0.696238669187546,0,0.0624054010353079,-0.253326341486756,0,0.283352000936972,0,0.356056687290217,0.798718603047795,0.356056687290217,0.116645853396732,0,0,-0.071852952953715,0,0,0,0.356056687290217,-0.0195468137788572,0.153323010348428,0.0943664993630715,0,0,0,0,0.209905593137141,0.597247080910331,-0.20151031986802,0,-0.306207320810725,0,0,0,0.153323010348428,0,0.236929101895696,0.000630981673209963,0,-0.442342426728662,0,0.0303055946720074,0,0,0,0.0672882862344756,-0.062400392205047,-0.0499135517462961,0,-0.131862706497632,0.71882297298442,0,0,0.266413775268255,0.407586790849779,0,0,0.566374360907042,0.076661505174214,0.0955925532947636,0.072526196761954,0,0,0,0.832112186229862,0,0,0,0.108665801569741,-0.16031995881401,0,0,-0.132975337529426,0,-0.29859727003766,0.274474807743375,0,-0.284524789643402,-0.2231814745239,-0.296171524482766,0,0.430324751605904,0.420841593204054,0,0,0.087195684067713,0,0,0.242950282922319,0,0,0,0,0.153323010348428,0,0.467874212594186,0.155414675469214,0,0,0,0.153323010348428,0.153323010348428,0.153323010348428,0.153323010348428,0,0,0,-0.0749289273684122,-0.0922240566585104,0,0,0,0,0,0.076661505174214,0,0.632958045283383,0.266654746421927,0,0,0,0,0,0.153323010348428,0.153323010348428,0.123442094051553,0.0223018409757485,0,0,0,0.153323010348428,0,0.0563306491058225,0,0.153323010348428,0,0.266413775268255,0.391570429102737,0,0,1.48406849810638,0,0,0,0,0,0,0,0,0,0.153323010348428,0,0,0,0.143094689232807,1.82623066724071,0,0.153323010348428,0,0,0,0,0,1.13980310636993,0,0,0,0,-0.113884373708977,0,0,0,0.161617390479099,0,0.481859147557998,0,0,0,0,0,0,0.076661505174214,0.076661505174214,0,0,0,0,0,0,0,0,0,0,0,0,0.037612944657262,-0.507808709747816,0,0.209820523123026,0.0420897728442463,0,0,-0.0227599598247,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153323010348428,0,0,0,0,0,0.076661505174214,0.06538732991853,0,0,0,0,0,0,0,-0.0979578962680575,0,0.076661505174214,0.256336453636553,0,0,0,0.153323010348428,0,0,0.205750939982281,0.0968503781304755,0.128369885563061,0,0,0,0.237438308494711,0.266413775268255,0.0145055531035738,0.030034852719335,0,-0.0667773874189013,0,0,0.15332301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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number=R1234214-10 | |rna_catalog_number=R1234214-10 | ||
| Line 56: | Line 78: | ||
|rna_tube_id=103F3 | |rna_tube_id=103F3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age=24 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.43321294564411e-221!GO:0005737;cytoplasm;1.21397581939385e-158!GO:0043226;organelle;4.61561855982706e-148!GO:0043229;intracellular organelle;7.6066845258838e-148!GO:0043231;intracellular membrane-bound organelle;1.61875634698748e-140!GO:0043227;membrane-bound organelle;1.61875634698748e-140!GO:0044444;cytoplasmic part;1.15673831919826e-106!GO:0044422;organelle part;1.22859491648296e-80!GO:0044446;intracellular organelle part;3.60323571961757e-79!GO:0005515;protein binding;3.73862929678397e-79!GO:0032991;macromolecular complex;1.80415926286198e-57!GO:0044238;primary metabolic process;1.04729099864961e-56!GO:0044237;cellular metabolic process;1.40564576781409e-56!GO:0043170;macromolecule metabolic process;4.66158401762188e-53!GO:0030529;ribonucleoprotein complex;1.36811181722869e-48!GO:0005634;nucleus;4.17313749556344e-48!GO:0003723;RNA binding;4.17313749556344e-48!GO:0043233;organelle lumen;4.22139571746772e-47!GO:0031974;membrane-enclosed lumen;4.22139571746772e-47!GO:0005739;mitochondrion;4.2049079202167e-45!GO:0044428;nuclear part;9.22653192972522e-44!GO:0015031;protein transport;4.26136651046877e-40!GO:0033036;macromolecule localization;4.26136651046877e-40!GO:0031090;organelle membrane;3.10887451996487e-39!GO:0016043;cellular component organization and biogenesis;1.16114058151431e-37!GO:0008104;protein localization;2.83123763899299e-37!GO:0045184;establishment of protein localization;4.51333242557487e-37!GO:0010467;gene expression;4.25991782210953e-33!GO:0019538;protein metabolic process;8.29787904470905e-32!GO:0044429;mitochondrial part;1.13486746014262e-31!GO:0043283;biopolymer metabolic process;9.21460361895176e-31!GO:0043234;protein complex;2.31419768893021e-29!GO:0031967;organelle envelope;6.6381832230422e-29!GO:0005840;ribosome;7.60269932958432e-29!GO:0031975;envelope;9.18445576060507e-29!GO:0046907;intracellular transport;9.18445576060507e-29!GO:0016071;mRNA metabolic process;1.77000109375615e-28!GO:0006396;RNA processing;5.7015785200128e-28!GO:0006412;translation;6.0255527121893e-28!GO:0044260;cellular macromolecule metabolic process;2.30173019078534e-27!GO:0031981;nuclear lumen;2.81824231336606e-27!GO:0044267;cellular protein metabolic process;1.009551901306e-26!GO:0005829;cytosol;3.4825689784847e-26!GO:0006886;intracellular protein transport;6.40563348882047e-26!GO:0008380;RNA splicing;3.07262277452534e-25!GO:0003735;structural constituent of ribosome;1.41874390850116e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.642392097068e-24!GO:0006397;mRNA processing;5.03758504123835e-23!GO:0033279;ribosomal subunit;5.77082087868502e-23!GO:0065003;macromolecular complex assembly;2.73894765729052e-21!GO:0009059;macromolecule biosynthetic process;3.24778877831497e-20!GO:0009058;biosynthetic process;3.50768287835486e-20!GO:0005740;mitochondrial envelope;4.02846855408335e-20!GO:0022607;cellular component assembly;6.90913523140237e-20!GO:0019866;organelle inner membrane;1.02224345897761e-19!GO:0044249;cellular biosynthetic process;1.04940517512397e-19!GO:0031966;mitochondrial membrane;1.73897835295711e-19!GO:0006119;oxidative phosphorylation;2.19595975989466e-19!GO:0005654;nucleoplasm;8.17893938660098e-19!GO:0008134;transcription factor binding;1.17351539838778e-18!GO:0005743;mitochondrial inner membrane;1.28104609474919e-18!GO:0016070;RNA metabolic process;2.45793707699884e-18!GO:0051649;establishment of cellular localization;3.40143684271304e-18!GO:0051641;cellular localization;5.03572779158263e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.40511750911033e-17!GO:0005783;endoplasmic reticulum;3.43253837085814e-17!GO:0005794;Golgi apparatus;4.06756908316694e-17!GO:0005681;spliceosome;4.26279747100837e-17!GO:0012505;endomembrane system;8.31002428145314e-17!GO:0016192;vesicle-mediated transport;8.61009705485354e-17!GO:0048770;pigment granule;2.58828373256078e-16!GO:0042470;melanosome;2.58828373256078e-16!GO:0003676;nucleic acid binding;4.4695514853378e-16!GO:0044451;nucleoplasm part;4.83264626531526e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.61001969339622e-16!GO:0048193;Golgi vesicle transport;7.09921846507459e-16!GO:0044455;mitochondrial membrane part;2.00362407648134e-15!GO:0006996;organelle organization and biogenesis;2.73665025239333e-15!GO:0005746;mitochondrial respiratory chain;1.11706610238172e-14!GO:0031980;mitochondrial lumen;1.18305122499547e-14!GO:0005759;mitochondrial matrix;1.18305122499547e-14!GO:0006457;protein folding;1.19895936661611e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.89449443385165e-14!GO:0044445;cytosolic part;1.91445294285005e-14!GO:0000166;nucleotide binding;2.08754623890023e-14!GO:0043228;non-membrane-bound organelle;4.47837287757415e-14!GO:0043232;intracellular non-membrane-bound organelle;4.47837287757415e-14!GO:0050136;NADH dehydrogenase (quinone) activity;4.90857804542375e-14!GO:0003954;NADH dehydrogenase activity;4.90857804542375e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.90857804542375e-14!GO:0022618;protein-RNA complex assembly;6.62194171365574e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.66968971887583e-13!GO:0016874;ligase activity;3.52794755084618e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.92774854007151e-13!GO:0019941;modification-dependent protein catabolic process;5.6447789949623e-13!GO:0043632;modification-dependent macromolecule catabolic process;5.6447789949623e-13!GO:0050794;regulation of cellular process;6.11640599473317e-13!GO:0044257;cellular protein catabolic process;6.65001905399469e-13!GO:0003712;transcription cofactor activity;8.65003064018332e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.73351388260301e-13!GO:0006605;protein targeting;1.41251759521566e-12!GO:0016462;pyrophosphatase activity;2.49721464746134e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.86127459330642e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.92497111959359e-12!GO:0015935;small ribosomal subunit;3.24948424205319e-12!GO:0006512;ubiquitin cycle;5.00296275804429e-12!GO:0030964;NADH dehydrogenase complex (quinone);5.02329865928537e-12!GO:0045271;respiratory chain complex I;5.02329865928537e-12!GO:0005747;mitochondrial respiratory chain complex I;5.02329865928537e-12!GO:0008135;translation factor activity, nucleic acid binding;5.1950132046921e-12!GO:0044432;endoplasmic reticulum part;5.94052445516627e-12!GO:0044265;cellular macromolecule catabolic process;1.07660789362834e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.14392497558427e-11!GO:0042773;ATP synthesis coupled electron transport;1.14392497558427e-11!GO:0015934;large ribosomal subunit;1.16425214870232e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.43227526397429e-11!GO:0016604;nuclear body;1.59239816912331e-11!GO:0050789;regulation of biological process;4.93171083739334e-11!GO:0017111;nucleoside-triphosphatase activity;4.93171083739334e-11!GO:0048523;negative regulation of cellular process;8.43986399983884e-11!GO:0016607;nuclear speck;1.2091828735205e-10!GO:0043285;biopolymer catabolic process;1.88782485386714e-10!GO:0006446;regulation of translational initiation;2.47925406507969e-10!GO:0031982;vesicle;3.30347385856648e-10!GO:0051082;unfolded protein binding;3.80301409622941e-10!GO:0031410;cytoplasmic vesicle;5.86111077263972e-10!GO:0043412;biopolymer modification;8.18496056952685e-10!GO:0005793;ER-Golgi intermediate compartment;8.70518254907108e-10!GO:0006913;nucleocytoplasmic transport;9.99267069417834e-10!GO:0008565;protein transporter activity;1.28337385012763e-09!GO:0044248;cellular catabolic process;1.41085549691938e-09!GO:0003743;translation initiation factor activity;1.49503081229763e-09!GO:0051186;cofactor metabolic process;1.55646487414998e-09!GO:0006366;transcription from RNA polymerase II promoter;1.62585607107887e-09!GO:0005635;nuclear envelope;1.69271666290329e-09!GO:0030163;protein catabolic process;1.84045352504951e-09!GO:0016564;transcription repressor activity;1.92836323473946e-09!GO:0051169;nuclear transport;2.05878770967357e-09!GO:0006413;translational initiation;3.01621935244679e-09!GO:0031988;membrane-bound vesicle;3.1629280484601e-09!GO:0009055;electron carrier activity;3.23687766490022e-09!GO:0005730;nucleolus;5.06650938006263e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.17669837651271e-09!GO:0031965;nuclear membrane;5.56474891705653e-09!GO:0048519;negative regulation of biological process;6.1521655177526e-09!GO:0016023;cytoplasmic membrane-bound vesicle;6.1521655177526e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.54409815850313e-09!GO:0017076;purine nucleotide binding;7.63358228554311e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.63358228554311e-09!GO:0005789;endoplasmic reticulum membrane;8.22488363654152e-09!GO:0032553;ribonucleotide binding;1.02659335795922e-08!GO:0032555;purine ribonucleotide binding;1.02659335795922e-08!GO:0006464;protein modification process;1.20179652158223e-08!GO:0006461;protein complex assembly;1.26660876800198e-08!GO:0000502;proteasome complex (sensu Eukaryota);1.29729785023205e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.46451930360192e-08!GO:0006732;coenzyme metabolic process;1.59465353361433e-08!GO:0006259;DNA metabolic process;1.70804161637762e-08!GO:0005761;mitochondrial ribosome;2.06518516825423e-08!GO:0000313;organellar ribosome;2.06518516825423e-08!GO:0012501;programmed cell death;2.21155456648698e-08!GO:0008092;cytoskeletal protein binding;2.34088181242033e-08!GO:0043687;post-translational protein modification;2.59977447364042e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;3.34117185548926e-08!GO:0000375;RNA splicing, via transesterification reactions;3.34117185548926e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.34117185548926e-08!GO:0009057;macromolecule catabolic process;3.35886020694691e-08!GO:0006915;apoptosis;3.53986285634052e-08!GO:0006888;ER to Golgi vesicle-mediated transport;6.35284241041985e-08!GO:0017038;protein import;6.57843537130022e-08!GO:0008219;cell death;8.62833192808797e-08!GO:0016265;death;8.62833192808797e-08!GO:0048475;coated membrane;9.8258566859975e-08!GO:0030117;membrane coat;9.8258566859975e-08!GO:0019829;cation-transporting ATPase activity;1.13595066231139e-07!GO:0008639;small protein conjugating enzyme activity;1.45921409228685e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.98682913221787e-07!GO:0004842;ubiquitin-protein ligase activity;2.53233776204641e-07!GO:0006793;phosphorus metabolic process;3.76990268428499e-07!GO:0006796;phosphate metabolic process;3.76990268428499e-07!GO:0030120;vesicle coat;4.20057160620932e-07!GO:0030662;coated vesicle membrane;4.20057160620932e-07!GO:0015986;ATP synthesis coupled proton transport;4.69163607731915e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.69163607731915e-07!GO:0005768;endosome;5.16048111074737e-07!GO:0031324;negative regulation of cellular metabolic process;5.45680271625307e-07!GO:0019787;small conjugating protein ligase activity;6.5176790442751e-07!GO:0009060;aerobic respiration;6.59540872947287e-07!GO:0031252;leading edge;6.7052836289999e-07!GO:0019222;regulation of metabolic process;7.49345187267955e-07!GO:0003714;transcription corepressor activity;7.80150504665768e-07!GO:0007264;small GTPase mediated signal transduction;8.19684370588274e-07!GO:0045333;cellular respiration;1.13630520969195e-06!GO:0065007;biological regulation;1.14515179991124e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.31486000561921e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.43431843996769e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.57797990004147e-06!GO:0042623;ATPase activity, coupled;1.57797990004147e-06!GO:0016481;negative regulation of transcription;1.70506220107835e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.80591907362788e-06!GO:0016568;chromatin modification;1.87389853717626e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.89422228105512e-06!GO:0016563;transcription activator activity;2.28167359598832e-06!GO:0016887;ATPase activity;2.29294807745413e-06!GO:0009892;negative regulation of metabolic process;2.51879365170731e-06!GO:0003713;transcription coactivator activity;2.963840662671e-06!GO:0006606;protein import into nucleus;3.26921375887015e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.32652846160656e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.32652846160656e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.44221935710062e-06!GO:0030554;adenyl nucleotide binding;3.44221935710062e-06!GO:0032559;adenyl ribonucleotide binding;3.74600389613999e-06!GO:0006323;DNA packaging;3.91933878167199e-06!GO:0044453;nuclear membrane part;3.93782777992446e-06!GO:0005524;ATP binding;4.25417102884224e-06!GO:0009141;nucleoside triphosphate metabolic process;4.6648831940971e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.81159982209627e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.81159982209627e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.91491692929916e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.91491692929916e-06!GO:0005798;Golgi-associated vesicle;4.91491692929916e-06!GO:0051170;nuclear import;4.99849926990752e-06!GO:0016881;acid-amino acid ligase activity;5.32497761939783e-06!GO:0016310;phosphorylation;6.10237729990167e-06!GO:0019899;enzyme binding;6.60141371327507e-06!GO:0006754;ATP biosynthetic process;6.85426941060742e-06!GO:0006753;nucleoside phosphate metabolic process;6.85426941060742e-06!GO:0005773;vacuole;7.12976824194506e-06!GO:0009259;ribonucleotide metabolic process;8.02562533964891e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.2658811316905e-06!GO:0009150;purine ribonucleotide metabolic process;8.2658811316905e-06!GO:0051789;response to protein stimulus;8.86094325367247e-06!GO:0006986;response to unfolded protein;8.86094325367247e-06!GO:0006099;tricarboxylic acid cycle;9.14725537604755e-06!GO:0046356;acetyl-CoA catabolic process;9.14725537604755e-06!GO:0046034;ATP metabolic process;9.44815789309179e-06!GO:0044431;Golgi apparatus part;9.67226558160652e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.03300494994194e-05!GO:0030133;transport vesicle;1.3890138356351e-05!GO:0008654;phospholipid biosynthetic process;1.49976174846242e-05!GO:0030029;actin filament-based process;1.49976174846242e-05!GO:0006163;purine nucleotide metabolic process;1.75019870870956e-05!GO:0005770;late endosome;1.94695645564385e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.02864061143584e-05!GO:0045259;proton-transporting ATP synthase complex;2.23204346560254e-05!GO:0008361;regulation of cell size;2.26016031730614e-05!GO:0009109;coenzyme catabolic process;2.48021478722147e-05!GO:0005643;nuclear pore;2.49088759469533e-05!GO:0051188;cofactor biosynthetic process;2.67030827074455e-05!GO:0051427;hormone receptor binding;2.72277496912582e-05!GO:0006613;cotranslational protein targeting to membrane;2.72277496912582e-05!GO:0006084;acetyl-CoA metabolic process;2.73112649798251e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.08940893937886e-05!GO:0016049;cell growth;3.08940893937886e-05!GO:0009260;ribonucleotide biosynthetic process;3.80080051910103e-05!GO:0031323;regulation of cellular metabolic process;3.83810666877277e-05!GO:0016044;membrane organization and biogenesis;3.94388641515514e-05!GO:0051246;regulation of protein metabolic process;4.04063826774514e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.17527069797736e-05!GO:0000323;lytic vacuole;4.3501160094908e-05!GO:0005764;lysosome;4.3501160094908e-05!GO:0006164;purine nucleotide biosynthetic process;4.51339154413763e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.54946781615215e-05!GO:0004812;aminoacyl-tRNA ligase activity;4.54946781615215e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.54946781615215e-05!GO:0009056;catabolic process;4.88861172654165e-05!GO:0000151;ubiquitin ligase complex;5.36840759868681e-05!GO:0045892;negative regulation of transcription, DNA-dependent;5.72865600691429e-05!GO:0035257;nuclear hormone receptor binding;5.72865600691429e-05!GO:0050657;nucleic acid transport;6.08406512452059e-05!GO:0051236;establishment of RNA localization;6.08406512452059e-05!GO:0050658;RNA transport;6.08406512452059e-05!GO:0006650;glycerophospholipid metabolic process;6.35128406135927e-05!GO:0006091;generation of precursor metabolites and energy;6.4190626341505e-05!GO:0008026;ATP-dependent helicase activity;6.98668767980704e-05!GO:0004386;helicase activity;7.31011711618257e-05!GO:0006403;RNA localization;7.32373490340762e-05!GO:0043566;structure-specific DNA binding;7.8986861519938e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.71222690866595e-05!GO:0003924;GTPase activity;8.96239603126916e-05!GO:0044440;endosomal part;9.11336610051997e-05!GO:0010008;endosome membrane;9.11336610051997e-05!GO:0043038;amino acid activation;9.83546204802933e-05!GO:0006418;tRNA aminoacylation for protein translation;9.83546204802933e-05!GO:0043039;tRNA aminoacylation;9.83546204802933e-05!GO:0006350;transcription;0.000107957134251622!GO:0045786;negative regulation of progression through cell cycle;0.000108859637512303!GO:0009108;coenzyme biosynthetic process;0.000110488112210129!GO:0048471;perinuclear region of cytoplasm;0.000111306298383262!GO:0032446;protein modification by small protein conjugation;0.00012344165843717!GO:0006916;anti-apoptosis;0.000124951254119437!GO:0003779;actin binding;0.000127930181123237!GO:0000245;spliceosome assembly;0.000128317743633156!GO:0007265;Ras protein signal transduction;0.000129618727083918!GO:0010468;regulation of gene expression;0.00013728870064987!GO:0045045;secretory pathway;0.000157680986941661!GO:0051187;cofactor catabolic process;0.000174283852439963!GO:0016567;protein ubiquitination;0.000192528196303422!GO:0043069;negative regulation of programmed cell death;0.000206078735850054!GO:0001558;regulation of cell growth;0.000228811075009111!GO:0030532;small nuclear ribonucleoprotein complex;0.000236536148874266!GO:0005525;GTP binding;0.00025726726817384!GO:0043066;negative regulation of apoptosis;0.000268588769910093!GO:0022890;inorganic cation transmembrane transporter activity;0.000281760797639822!GO:0042981;regulation of apoptosis;0.00028541307571028!GO:0045893;positive regulation of transcription, DNA-dependent;0.000287011315659138!GO:0005083;small GTPase regulator activity;0.000287011315659138!GO:0065002;intracellular protein transport across a membrane;0.000307458468593259!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000319041058989916!GO:0033116;ER-Golgi intermediate compartment membrane;0.000319041058989916!GO:0005791;rough endoplasmic reticulum;0.000341790560923918!GO:0051276;chromosome organization and biogenesis;0.000342831556533487!GO:0043067;regulation of programmed cell death;0.000347704691380878!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000347960160433335!GO:0030027;lamellipodium;0.000375169563116841!GO:0003724;RNA helicase activity;0.000392561757080919!GO:0005788;endoplasmic reticulum lumen;0.000419728674618945!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000421413200140942!GO:0015399;primary active transmembrane transporter activity;0.000421413200140942!GO:0042802;identical protein binding;0.000425086596875613!GO:0016197;endosome transport;0.000426914130767179!GO:0006399;tRNA metabolic process;0.000447516514255497!GO:0000139;Golgi membrane;0.000456025242380817!GO:0019843;rRNA binding;0.000483850665126558!GO:0015980;energy derivation by oxidation of organic compounds;0.000487028802921324!GO:0006351;transcription, DNA-dependent;0.000502975658091302!GO:0032774;RNA biosynthetic process;0.000505019053433912!GO:0006402;mRNA catabolic process;0.000505019053433912!GO:0016859;cis-trans isomerase activity;0.000555167438456509!GO:0046930;pore complex;0.000572405893667996!GO:0030867;rough endoplasmic reticulum membrane;0.000581425128103559!GO:0007243;protein kinase cascade;0.000584145403514077!GO:0051028;mRNA transport;0.000646834613503153!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000671483489983551!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000733837567400286!GO:0001726;ruffle;0.00083384681809444!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000850016588551792!GO:0042254;ribosome biogenesis and assembly;0.000903639855521481!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000931474204689463!GO:0035258;steroid hormone receptor binding;0.000951000034341537!GO:0016491;oxidoreductase activity;0.000977295917138196!GO:0006892;post-Golgi vesicle-mediated transport;0.00103929694081157!GO:0043623;cellular protein complex assembly;0.00103929694081157!GO:0005839;proteasome core complex (sensu Eukaryota);0.00105342557589169!GO:0030134;ER to Golgi transport vesicle;0.00110512714588285!GO:0003697;single-stranded DNA binding;0.00111534625899141!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.001128959174175!GO:0030658;transport vesicle membrane;0.00113714146379821!GO:0008286;insulin receptor signaling pathway;0.00114031933281705!GO:0030127;COPII vesicle coat;0.00114617559258658!GO:0012507;ER to Golgi transport vesicle membrane;0.00114617559258658!GO:0043492;ATPase activity, coupled to movement of substances;0.0011881878460675!GO:0003729;mRNA binding;0.00119921399599011!GO:0006752;group transfer coenzyme metabolic process;0.00121743688207694!GO:0005762;mitochondrial large ribosomal subunit;0.00128713706205023!GO:0000315;organellar large ribosomal subunit;0.00128713706205023!GO:0032561;guanyl ribonucleotide binding;0.00128930950735086!GO:0019001;guanyl nucleotide binding;0.00128930950735086!GO:0043021;ribonucleoprotein binding;0.00129968346278419!GO:0031072;heat shock protein binding;0.00133314343602774!GO:0006891;intra-Golgi vesicle-mediated transport;0.00136792006869606!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00140094052320344!GO:0045941;positive regulation of transcription;0.00146396225274636!GO:0004576;oligosaccharyl transferase activity;0.00152665000066899!GO:0045449;regulation of transcription;0.00159326055445589!GO:0051920;peroxiredoxin activity;0.00161901480931709!GO:0030118;clathrin coat;0.00164655661906029!GO:0005905;coated pit;0.00172803633239202!GO:0006612;protein targeting to membrane;0.00182635970123671!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00182635970123671!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00182635970123671!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00183445316636389!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00183445316636389!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00183445316636389!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00183448063460653!GO:0003690;double-stranded DNA binding;0.00188874090220285!GO:0003702;RNA polymerase II transcription factor activity;0.00190911037028086!GO:0007010;cytoskeleton organization and biogenesis;0.0019372967327022!GO:0006333;chromatin assembly or disassembly;0.00204368843347774!GO:0009966;regulation of signal transduction;0.00221886987327862!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00221886987327862!GO:0008250;oligosaccharyl transferase complex;0.00224899021016748!GO:0006414;translational elongation;0.00233305338379704!GO:0006897;endocytosis;0.00239980907377741!GO:0010324;membrane invagination;0.00239980907377741!GO:0006974;response to DNA damage stimulus;0.00249552784130725!GO:0048522;positive regulation of cellular process;0.00249596174565381!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00253939039047959!GO:0046474;glycerophospholipid biosynthetic process;0.00260519586611631!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00264662508683495!GO:0005769;early endosome;0.00268265694356144!GO:0030384;phosphoinositide metabolic process;0.0028756705780587!GO:0006355;regulation of transcription, DNA-dependent;0.00290814054217668!GO:0015992;proton transport;0.00290814054217668!GO:0030119;AP-type membrane coat adaptor complex;0.00305412553233648!GO:0030695;GTPase regulator activity;0.00326997839939917!GO:0006818;hydrogen transport;0.00328119209778576!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00332342845935865!GO:0005667;transcription factor complex;0.00334700050934825!GO:0016853;isomerase activity;0.0033581913876618!GO:0032940;secretion by cell;0.00360575696547554!GO:0004298;threonine endopeptidase activity;0.00362418690305217!GO:0046467;membrane lipid biosynthetic process;0.00380673488511587!GO:0030518;steroid hormone receptor signaling pathway;0.0038966272303028!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00391419309055452!GO:0009719;response to endogenous stimulus;0.00395807749989015!GO:0005099;Ras GTPase activator activity;0.00398560278244952!GO:0030660;Golgi-associated vesicle membrane;0.00436891453753823!GO:0005741;mitochondrial outer membrane;0.00456465614905912!GO:0008186;RNA-dependent ATPase activity;0.0047820474591271!GO:0048500;signal recognition particle;0.00486740376300399!GO:0005048;signal sequence binding;0.00513496821570634!GO:0040008;regulation of growth;0.00523492000356381!GO:0051168;nuclear export;0.0055050326091583!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00551005843855691!GO:0031968;organelle outer membrane;0.0059974823407414!GO:0030659;cytoplasmic vesicle membrane;0.00608990201272318!GO:0008047;enzyme activator activity;0.00617893363475902!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00637042607521057!GO:0006644;phospholipid metabolic process;0.00649620734232787!GO:0030663;COPI coated vesicle membrane;0.00658217459981498!GO:0030126;COPI vesicle coat;0.00658217459981498!GO:0006643;membrane lipid metabolic process;0.00658867925544873!GO:0006401;RNA catabolic process;0.00669060198251704!GO:0030131;clathrin adaptor complex;0.00675057245921931!GO:0012506;vesicle membrane;0.00678817143289455!GO:0005885;Arp2/3 protein complex;0.00686145574968811!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00694937078096658!GO:0045454;cell redox homeostasis;0.00703390322237524!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00706037663647131!GO:0045947;negative regulation of translational initiation;0.0073723977307638!GO:0000314;organellar small ribosomal subunit;0.0073723977307638!GO:0005763;mitochondrial small ribosomal subunit;0.0073723977307638!GO:0031902;late endosome membrane;0.00738003491436465!GO:0019867;outer membrane;0.00743576308496632!GO:0045792;negative regulation of cell size;0.00789803992912948!GO:0006984;ER-nuclear signaling pathway;0.00814520766174988!GO:0017166;vinculin binding;0.00828418870672962!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0083621130366464!GO:0006979;response to oxidative stress;0.0087037010424415!GO:0051287;NAD binding;0.00872162483664961!GO:0008287;protein serine/threonine phosphatase complex;0.00897920383632119!GO:0007049;cell cycle;0.0091954694982533!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0092356605104099!GO:0051726;regulation of cell cycle;0.00950314723138272!GO:0051087;chaperone binding;0.00956900364720798!GO:0018196;peptidyl-asparagine modification;0.00956900364720798!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00956900364720798!GO:0030308;negative regulation of cell growth;0.00963589881892728!GO:0000074;regulation of progression through cell cycle;0.0100966940405751!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0103603003344763!GO:0045047;protein targeting to ER;0.0103603003344763!GO:0051540;metal cluster binding;0.0105456828170919!GO:0051536;iron-sulfur cluster binding;0.0105456828170919!GO:0006281;DNA repair;0.0106360590467621!GO:0008270;zinc ion binding;0.0110509226284728!GO:0007266;Rho protein signal transduction;0.0112347286230662!GO:0044433;cytoplasmic vesicle part;0.0112845816322664!GO:0004004;ATP-dependent RNA helicase activity;0.0124123138828548!GO:0019752;carboxylic acid metabolic process;0.0130035653267528!GO:0006693;prostaglandin metabolic process;0.0130483692691429!GO:0006692;prostanoid metabolic process;0.0130483692691429!GO:0046914;transition metal ion binding;0.0131977589878616!GO:0008139;nuclear localization sequence binding;0.0139712730812665!GO:0019904;protein domain specific binding;0.0141695045142383!GO:0032594;protein transport within lipid bilayer;0.0141695045142383!GO:0032907;transforming growth factor-beta3 production;0.0141695045142383!GO:0032596;protein transport into lipid raft;0.0141695045142383!GO:0032910;regulation of transforming growth factor-beta3 production;0.0141695045142383!GO:0032595;B cell receptor transport within lipid bilayer;0.0141695045142383!GO:0033606;chemokine receptor transport within lipid bilayer;0.0141695045142383!GO:0032600;chemokine receptor transport out of lipid raft;0.0141695045142383!GO:0032599;protein transport out of lipid raft;0.0141695045142383!GO:0032597;B cell receptor transport into lipid raft;0.0141695045142383!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0141695045142383!GO:0051252;regulation of RNA metabolic process;0.0141695045142383!GO:0030132;clathrin coat of coated pit;0.0143433247828252!GO:0043488;regulation of mRNA stability;0.014542507484146!GO:0043487;regulation of RNA stability;0.014542507484146!GO:0007005;mitochondrion organization and biogenesis;0.0148185636194471!GO:0008312;7S RNA binding;0.0150463593979398!GO:0051128;regulation of cellular component organization and biogenesis;0.0152200636019847!GO:0016740;transferase activity;0.0152200636019847!GO:0043034;costamere;0.0152640804225477!GO:0065004;protein-DNA complex assembly;0.0156587085047735!GO:0006082;organic acid metabolic process;0.0160291503158605!GO:0046489;phosphoinositide biosynthetic process;0.0166516204381014!GO:0005774;vacuolar membrane;0.0166743110327247!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0166743110327247!GO:0030137;COPI-coated vesicle;0.0166870398801726!GO:0019371;cyclooxygenase pathway;0.0168426731639401!GO:0007242;intracellular signaling cascade;0.0174475063125127!GO:0022406;membrane docking;0.0176613889125861!GO:0048278;vesicle docking;0.0176613889125861!GO:0005096;GTPase activator activity;0.0178064118983306!GO:0030176;integral to endoplasmic reticulum membrane;0.0179042797866694!GO:0048518;positive regulation of biological process;0.0180414279898409!GO:0030968;unfolded protein response;0.0181393158972292!GO:0006904;vesicle docking during exocytosis;0.0187913842595177!GO:0043087;regulation of GTPase activity;0.0197403068322153!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0197741705078379!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0197741705078379!GO:0003746;translation elongation factor activity;0.0200492948981148!GO:0030521;androgen receptor signaling pathway;0.0202425511450794!GO:0046983;protein dimerization activity;0.0202803002270579!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0204932574434226!GO:0016363;nuclear matrix;0.0208681701746143!GO:0031625;ubiquitin protein ligase binding;0.0213949167469861!GO:0006607;NLS-bearing substrate import into nucleus;0.0214886053768114!GO:0005100;Rho GTPase activator activity;0.0231576815844696!GO:0030522;intracellular receptor-mediated signaling pathway;0.0235267396372583!GO:0016787;hydrolase activity;0.0236453088598374!GO:0009083;branched chain family amino acid catabolic process;0.0239292150627345!GO:0030140;trans-Golgi network transport vesicle;0.024602221269586!GO:0005813;centrosome;0.0246195059599441!GO:0033673;negative regulation of kinase activity;0.02498192770532!GO:0006469;negative regulation of protein kinase activity;0.02498192770532!GO:0008601;protein phosphatase type 2A regulator activity;0.0250816354867981!GO:0003711;transcription elongation regulator activity;0.0251173580861302!GO:0005869;dynactin complex;0.0251722846524953!GO:0015631;tubulin binding;0.0254127367208283!GO:0008154;actin polymerization and/or depolymerization;0.0256150882208453!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.025667741936791!GO:0046813;virion attachment, binding of host cell surface receptor;0.025667741936791!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.025667741936791!GO:0030041;actin filament polymerization;0.0260777809636135!GO:0006364;rRNA processing;0.0260777809636135!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0261532443904203!GO:0015002;heme-copper terminal oxidase activity;0.0261532443904203!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0261532443904203!GO:0004129;cytochrome-c oxidase activity;0.0261532443904203!GO:0048468;cell development;0.0266225068321417!GO:0000059;protein import into nucleus, docking;0.0273879546728689!GO:0009117;nucleotide metabolic process;0.029273823225874!GO:0050662;coenzyme binding;0.0304236135908009!GO:0006376;mRNA splice site selection;0.0304236135908009!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0304236135908009!GO:0016584;nucleosome positioning;0.0304236135908009!GO:0050811;GABA receptor binding;0.0309041439540757!GO:0005912;adherens junction;0.0311432042388513!GO:0007569;cell aging;0.0324634785224742!GO:0006338;chromatin remodeling;0.0324634785224742!GO:0001516;prostaglandin biosynthetic process;0.0326090731503831!GO:0046457;prostanoid biosynthetic process;0.0326090731503831!GO:0051539;4 iron, 4 sulfur cluster binding;0.0326174102597762!GO:0006658;phosphatidylserine metabolic process;0.0326174102597762!GO:0016791;phosphoric monoester hydrolase activity;0.0326174102597762!GO:0030241;muscle thick filament assembly;0.0326174102597762!GO:0031034;myosin filament assembly;0.0326174102597762!GO:0031033;myosin filament assembly or disassembly;0.0326174102597762!GO:0048739;cardiac muscle fiber development;0.0326174102597762!GO:0004177;aminopeptidase activity;0.0327107617075234!GO:0001666;response to hypoxia;0.0327123098108476!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0336658314522879!GO:0007030;Golgi organization and biogenesis;0.0337226227752783!GO:0000118;histone deacetylase complex;0.0337226227752783!GO:0043681;protein import into mitochondrion;0.0338529627683137!GO:0035035;histone acetyltransferase binding;0.0338529627683137!GO:0004674;protein serine/threonine kinase activity;0.0340499887421923!GO:0009081;branched chain family amino acid metabolic process;0.0349862875496098!GO:0000902;cell morphogenesis;0.0353623987468293!GO:0032989;cellular structure morphogenesis;0.0353623987468293!GO:0006383;transcription from RNA polymerase III promoter;0.0354288378572519!GO:0051348;negative regulation of transferase activity;0.0354334783084532!GO:0006518;peptide metabolic process;0.0354944971994693!GO:0048487;beta-tubulin binding;0.0366045190786305!GO:0031529;ruffle organization and biogenesis;0.0366116647513457!GO:0006749;glutathione metabolic process;0.0373659686391013!GO:0008147;structural constituent of bone;0.0378762275749338!GO:0016885;ligase activity, forming carbon-carbon bonds;0.0379314754493982!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0379400550398216!GO:0043284;biopolymer biosynthetic process;0.0379698135388333!GO:0030433;ER-associated protein catabolic process;0.0380014043965592!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0380014043965592!GO:0006354;RNA elongation;0.0383426931699929!GO:0005765;lysosomal membrane;0.0385972348379586!GO:0045926;negative regulation of growth;0.0386114721810785!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0388154431572266!GO:0031124;mRNA 3'-end processing;0.0398391500004981!GO:0050681;androgen receptor binding;0.0401646434378948!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0407458356640396!GO:0004667;prostaglandin-D synthase activity;0.0407458356640396!GO:0050802;circadian sleep/wake cycle, sleep;0.0407458356640396!GO:0022410;circadian sleep/wake cycle process;0.0407458356640396!GO:0042749;regulation of circadian sleep/wake cycle;0.0407458356640396!GO:0050178;phenylpyruvate tautomerase activity;0.0418018775526953!GO:0007040;lysosome organization and biogenesis;0.0418254843007092!GO:0016072;rRNA metabolic process;0.0421704673178363!GO:0006635;fatty acid beta-oxidation;0.0431101745950556!GO:0007033;vacuole organization and biogenesis;0.0434298106040861!GO:0043022;ribosome binding;0.0436470646436873!GO:0044437;vacuolar part;0.0439695898949433!GO:0004364;glutathione transferase activity;0.0443249762182372!GO:0030125;clathrin vesicle coat;0.0444501902534041!GO:0030665;clathrin coated vesicle membrane;0.0444501902534041!GO:0000785;chromatin;0.0445280820612158!GO:0045098;type III intermediate filament;0.046969751782752!GO:0030911;TPR domain binding;0.0471568603221896!GO:0015630;microtubule cytoskeleton;0.0485402917823537!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0485531875713809!GO:0030913;paranodal junction assembly;0.0489479194665411!GO:0032288;myelin formation;0.0489479194665411!GO:0005784;translocon complex;0.0495525665458211!GO:0000159;protein phosphatase type 2A complex;0.0495525665458211 | |||
|sample_id=10201 | |sample_id=10201 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex=M | ||
|sample_species=Human (Homo sapiens) | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=IKZF2:2.71221779345;AR:2.19389563592;ARID5B:2.1332228025;XBP1:2.07034776557;SRF:1.95099126509;SNAI1..3:1.79640076735;FOXP1:1.78431947391;GATA4:1.74069268381;TLX2:1.68787845712;MYFfamily:1.64261360365;FOXO1,3,4:1.64260588355;ESR1:1.54565121527;FOXN1:1.51304280043;NR3C1:1.50992471477;ATF6:1.47812615388;ZIC1..3:1.47384347733;UFEwm:1.46481507707;HMX1:1.3616476855;NR6A1:1.34098814349;TFAP2{A,C}:1.31301485989;MAZ:1.30673901003;MZF1:1.25059740223;GTF2I:1.24808222321;T:1.23866603693;FOX{D1,D2}:1.20460519341;ZEB1:1.20457570589;SOX5:1.19971045663;MED-1{core}:1.19952071028;PRDM1:1.17145711842;PITX1..3:1.13446080155;TFCP2:1.13157355335;TFAP4:1.12717272139;NFE2L1:1.11044496124;HAND1,2:1.0808290367;MYBL2:1.06182614794;PAX6:1.06001297763;FOXL1:1.04770069;GFI1B:1.00859478381;CDC5L:1.00192277697;SPZ1:0.989026960969;HIC1:0.986574564554;RREB1:0.975511308269;SP1:0.970029492143;MTF1:0.891339997968;ZBTB6:0.887612483911;HBP1_HMGB_SSRP1_UBTF:0.856654578035;TLX1..3_NFIC{dimer}:0.848322669469;PATZ1:0.819776037917;NR5A1,2:0.813161803131;MYOD1:0.804237647947;TFAP2B:0.803886922902;TOPORS:0.789338437415;HOX{A4,D4}:0.786371607244;TEAD1:0.755782934832;SMAD1..7,9:0.75441788274;POU2F1..3:0.738468527412;BPTF:0.732562524281;HNF1A:0.704029167301;POU3F1..4:0.660860070925;FOXQ1:0.658889640962;RFX2..5_RFXANK_RFXAP:0.656735083156;GZF1:0.61816087573;GATA6:0.618128933664;MTE{core}:0.589290514515;PAX5:0.575342417946;DBP:0.537901054088;TBP:0.529234126967;XCPE1{core}:0.517219848308;NKX3-2:0.514436436992;EGR1..3:0.483553419843;ATF4:0.467461228559;KLF4:0.463454458205;NHLH1,2:0.462143662182;ZNF423:0.443201773022;ONECUT1,2:0.43438814432;HMGA1,2:0.413181385497;POU6F1:0.40460106893;EVI1:0.388246210134;GCM1,2:0.36108485357;HOXA9_MEIS1:0.355862688938;FOXP3:0.354107790284;NKX2-2,8:0.326269032438;RXR{A,B,G}:0.325071798804;TP53:0.266936359137;HOX{A6,A7,B6,B7}:0.253486046532;HSF1,2:0.213417239901;NFATC1..3:0.208343579647;STAT2,4,6:0.200138012456;EBF1:0.191566796775;NR1H4:0.183251712406;ZFP161:0.183240473778;NFIX:0.182906280852;RXRA_VDR{dimer}:0.1545005974;EP300:0.151229416838;LMO2:0.141161140333;FOXM1:0.133203925189;MEF2{A,B,C,D}:0.133050189121;RFX1:0.0986639597587;REST:0.0967214893495;RBPJ:0.09589189129;MAFB:0.0834030147586;BREu{core}:0.0586605098619;ATF5_CREB3:0.0523593962494;HES1:0.0284153050979;GTF2A1,2:0.0260658286161;ZBTB16:0.00719643281994;TBX4,5:-0.00612274193401;POU5F1:-0.0193129131643;ESRRA:-0.0301191139945;STAT1,3:-0.0333140373915;DMAP1_NCOR{1,2}_SMARC:-0.0670960584433;TEF:-0.103143127238;SREBF1,2:-0.104894558456;TGIF1:-0.109649952579;CREB1:-0.128244730337;ZNF238:-0.128343511151;TAL1_TCF{3,4,12}:-0.169415137936;AHR_ARNT_ARNT2:-0.18882913605;HNF4A_NR2F1,2:-0.189593836473;IRF7:-0.192523788543;ZNF384:-0.228869437383;SPI1:-0.231580967854;ETS1,2:-0.269568423026;CDX1,2,4:-0.303808854068;ALX4:-0.30578890989;IRF1,2:-0.327515040829;FOXD3:-0.36693380075;GLI1..3:-0.373167511251;ZNF143:-0.380719828096;HIF1A:-0.410395071614;PAX1,9:-0.455229690769;SPIB:-0.458396311067;IKZF1:-0.4603245559;NKX2-1,4:-0.464294779209;NFKB1_REL_RELA:-0.485761500363;GFI1:-0.52632354561;ATF2:-0.529592789973;ALX1:-0.545704613709;JUN:-0.57413591459;NKX2-3_NKX2-5:-0.576105848561;NKX6-1,2:-0.578132332839;AIRE:-0.584065779657;CEBPA,B_DDIT3:-0.585102415548;ELF1,2,4:-0.597036269613;SOX2:-0.612839422281;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.632955499711;NRF1:-0.653910318161;PAX2:-0.664896056372;PBX1:-0.673848020153;ADNP_IRX_SIX_ZHX:-0.684029070147;LHX3,4:-0.699044611243;PAX3,7:-0.704550022342;CUX2:-0.725514547948;YY1:-0.741077025435;ZNF148:-0.756089128382;LEF1_TCF7_TCF7L1,2:-0.771680350576;SOX{8,9,10}:-0.781257224167;NFY{A,B,C}:-0.784841236153;FOSL2:-0.792271932826;RUNX1..3:-0.833321869376;ELK1,4_GABP{A,B1}:-0.850603265451;TFDP1:-0.853463755435;NFE2:-0.863100483729;BACH2:-0.897694134755;POU1F1:-0.938510650942;SOX17:-0.94081802075;HOX{A5,B5}:-0.942221103665;HLF:-0.994542424114;NANOG:-1.01884352574;FOX{F1,F2,J1}:-1.02551314331;FOS_FOS{B,L1}_JUN{B,D}:-1.06203337728;NFIL3:-1.1261265068;RORA:-1.12984084546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.14663023871;VSX1,2:-1.16533651392;PRRX1,2:-1.18002731507;STAT5{A,B}:-1.18384562572;PDX1:-1.19364803024;bHLH_family:-1.19456751175;FOXA2:-1.19830930903;E2F1..5:-1.19872207336;PAX4:-1.22831368721;NFE2L2:-1.26981045126;FOX{I1,J2}:-1.29123831713;OCT4_SOX2{dimer}:-1.31492179134;PAX8:-1.31614304151;NANOG{mouse}:-1.49754896681;NKX3-1:-1.52856218367;PPARG:-1.68821838807;MYB:-1.70111200273;EN1,2:-2.03611746887;CRX:-2.46368753388 | |top_motifs=IKZF2:2.71221779345;AR:2.19389563592;ARID5B:2.1332228025;XBP1:2.07034776557;SRF:1.95099126509;SNAI1..3:1.79640076735;FOXP1:1.78431947391;GATA4:1.74069268381;TLX2:1.68787845712;MYFfamily:1.64261360365;FOXO1,3,4:1.64260588355;ESR1:1.54565121527;FOXN1:1.51304280043;NR3C1:1.50992471477;ATF6:1.47812615388;ZIC1..3:1.47384347733;UFEwm:1.46481507707;HMX1:1.3616476855;NR6A1:1.34098814349;TFAP2{A,C}:1.31301485989;MAZ:1.30673901003;MZF1:1.25059740223;GTF2I:1.24808222321;T:1.23866603693;FOX{D1,D2}:1.20460519341;ZEB1:1.20457570589;SOX5:1.19971045663;MED-1{core}:1.19952071028;PRDM1:1.17145711842;PITX1..3:1.13446080155;TFCP2:1.13157355335;TFAP4:1.12717272139;NFE2L1:1.11044496124;HAND1,2:1.0808290367;MYBL2:1.06182614794;PAX6:1.06001297763;FOXL1:1.04770069;GFI1B:1.00859478381;CDC5L:1.00192277697;SPZ1:0.989026960969;HIC1:0.986574564554;RREB1:0.975511308269;SP1:0.970029492143;MTF1:0.891339997968;ZBTB6:0.887612483911;HBP1_HMGB_SSRP1_UBTF:0.856654578035;TLX1..3_NFIC{dimer}:0.848322669469;PATZ1:0.819776037917;NR5A1,2:0.813161803131;MYOD1:0.804237647947;TFAP2B:0.803886922902;TOPORS:0.789338437415;HOX{A4,D4}:0.786371607244;TEAD1:0.755782934832;SMAD1..7,9:0.75441788274;POU2F1..3:0.738468527412;BPTF:0.732562524281;HNF1A:0.704029167301;POU3F1..4:0.660860070925;FOXQ1:0.658889640962;RFX2..5_RFXANK_RFXAP:0.656735083156;GZF1:0.61816087573;GATA6:0.618128933664;MTE{core}:0.589290514515;PAX5:0.575342417946;DBP:0.537901054088;TBP:0.529234126967;XCPE1{core}:0.517219848308;NKX3-2:0.514436436992;EGR1..3:0.483553419843;ATF4:0.467461228559;KLF4:0.463454458205;NHLH1,2:0.462143662182;ZNF423:0.443201773022;ONECUT1,2:0.43438814432;HMGA1,2:0.413181385497;POU6F1:0.40460106893;EVI1:0.388246210134;GCM1,2:0.36108485357;HOXA9_MEIS1:0.355862688938;FOXP3:0.354107790284;NKX2-2,8:0.326269032438;RXR{A,B,G}:0.325071798804;TP53:0.266936359137;HOX{A6,A7,B6,B7}:0.253486046532;HSF1,2:0.213417239901;NFATC1..3:0.208343579647;STAT2,4,6:0.200138012456;EBF1:0.191566796775;NR1H4:0.183251712406;ZFP161:0.183240473778;NFIX:0.182906280852;RXRA_VDR{dimer}:0.1545005974;EP300:0.151229416838;LMO2:0.141161140333;FOXM1:0.133203925189;MEF2{A,B,C,D}:0.133050189121;RFX1:0.0986639597587;REST:0.0967214893495;RBPJ:0.09589189129;MAFB:0.0834030147586;BREu{core}:0.0586605098619;ATF5_CREB3:0.0523593962494;HES1:0.0284153050979;GTF2A1,2:0.0260658286161;ZBTB16:0.00719643281994;TBX4,5:-0.00612274193401;POU5F1:-0.0193129131643;ESRRA:-0.0301191139945;STAT1,3:-0.0333140373915;DMAP1_NCOR{1,2}_SMARC:-0.0670960584433;TEF:-0.103143127238;SREBF1,2:-0.104894558456;TGIF1:-0.109649952579;CREB1:-0.128244730337;ZNF238:-0.128343511151;TAL1_TCF{3,4,12}:-0.169415137936;AHR_ARNT_ARNT2:-0.18882913605;HNF4A_NR2F1,2:-0.189593836473;IRF7:-0.192523788543;ZNF384:-0.228869437383;SPI1:-0.231580967854;ETS1,2:-0.269568423026;CDX1,2,4:-0.303808854068;ALX4:-0.30578890989;IRF1,2:-0.327515040829;FOXD3:-0.36693380075;GLI1..3:-0.373167511251;ZNF143:-0.380719828096;HIF1A:-0.410395071614;PAX1,9:-0.455229690769;SPIB:-0.458396311067;IKZF1:-0.4603245559;NKX2-1,4:-0.464294779209;NFKB1_REL_RELA:-0.485761500363;GFI1:-0.52632354561;ATF2:-0.529592789973;ALX1:-0.545704613709;JUN:-0.57413591459;NKX2-3_NKX2-5:-0.576105848561;NKX6-1,2:-0.578132332839;AIRE:-0.584065779657;CEBPA,B_DDIT3:-0.585102415548;ELF1,2,4:-0.597036269613;SOX2:-0.612839422281;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.632955499711;NRF1:-0.653910318161;PAX2:-0.664896056372;PBX1:-0.673848020153;ADNP_IRX_SIX_ZHX:-0.684029070147;LHX3,4:-0.699044611243;PAX3,7:-0.704550022342;CUX2:-0.725514547948;YY1:-0.741077025435;ZNF148:-0.756089128382;LEF1_TCF7_TCF7L1,2:-0.771680350576;SOX{8,9,10}:-0.781257224167;NFY{A,B,C}:-0.784841236153;FOSL2:-0.792271932826;RUNX1..3:-0.833321869376;ELK1,4_GABP{A,B1}:-0.850603265451;TFDP1:-0.853463755435;NFE2:-0.863100483729;BACH2:-0.897694134755;POU1F1:-0.938510650942;SOX17:-0.94081802075;HOX{A5,B5}:-0.942221103665;HLF:-0.994542424114;NANOG:-1.01884352574;FOX{F1,F2,J1}:-1.02551314331;FOS_FOS{B,L1}_JUN{B,D}:-1.06203337728;NFIL3:-1.1261265068;RORA:-1.12984084546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.14663023871;VSX1,2:-1.16533651392;PRRX1,2:-1.18002731507;STAT5{A,B}:-1.18384562572;PDX1:-1.19364803024;bHLH_family:-1.19456751175;FOXA2:-1.19830930903;E2F1..5:-1.19872207336;PAX4:-1.22831368721;NFE2L2:-1.26981045126;FOX{I1,J2}:-1.29123831713;OCT4_SOX2{dimer}:-1.31492179134;PAX8:-1.31614304151;NANOG{mouse}:-1.49754896681;NKX3-1:-1.52856218367;PPARG:-1.68821838807;MYB:-1.70111200273;EN1,2:-2.03611746887;CRX:-2.46368753388 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10201-103F3;search_select_hide=table117:FF:10201-103F3 | |||
}} | }} | ||
Latest revision as of 13:55, 3 June 2020
| Name: | seminal vesicle, adult |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12851 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12851
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12851
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.25 |
| 10 | 10 | 0.368 |
| 100 | 100 | 0.508 |
| 101 | 101 | 0.694 |
| 102 | 102 | 0.934 |
| 103 | 103 | 0.5 |
| 104 | 104 | 0.688 |
| 105 | 105 | 0.0556 |
| 106 | 106 | 0.621 |
| 107 | 107 | 0.415 |
| 108 | 108 | 0.337 |
| 109 | 109 | 0.023 |
| 11 | 11 | 0.127 |
| 110 | 110 | 0.0262 |
| 111 | 111 | 0.517 |
| 112 | 112 | 0.314 |
| 113 | 113 | 0.367 |
| 114 | 114 | 0.969 |
| 115 | 115 | 0.39 |
| 116 | 116 | 0.446 |
| 117 | 117 | 0.103 |
| 118 | 118 | 0.608 |
| 119 | 119 | 0.248 |
| 12 | 12 | 0.364 |
| 120 | 120 | 0.0329 |
| 121 | 121 | 0.831 |
| 122 | 122 | 0.852 |
| 123 | 123 | 0.395 |
| 124 | 124 | 0.184 |
| 125 | 125 | 0.696 |
| 126 | 126 | 0.844 |
| 127 | 127 | 0.207 |
| 128 | 128 | 0.183 |
| 129 | 129 | 0.832 |
| 13 | 13 | 0.223 |
| 130 | 130 | 0.027 |
| 131 | 131 | 0.678 |
| 132 | 132 | 0.00839 |
| 133 | 133 | 0.155 |
| 134 | 134 | 0.837 |
| 135 | 135 | 0.482 |
| 136 | 136 | 0.873 |
| 137 | 137 | 0.176 |
| 138 | 138 | 0.406 |
| 139 | 139 | 0.602 |
| 14 | 14 | 0.932 |
| 140 | 140 | 0.935 |
| 141 | 141 | 0.796 |
| 142 | 142 | 0.601 |
| 143 | 143 | 0.247 |
| 144 | 144 | 0.528 |
| 145 | 145 | 0.981 |
| 146 | 146 | 0.409 |
| 147 | 147 | 0.665 |
| 148 | 148 | 0.75 |
| 149 | 149 | 0.887 |
| 15 | 15 | 0.0658 |
| 150 | 150 | 0.798 |
| 151 | 151 | 0.816 |
| 152 | 152 | 0.895 |
| 153 | 153 | 0.631 |
| 154 | 154 | 0.764 |
| 155 | 155 | 0.707 |
| 156 | 156 | 0.124 |
| 157 | 157 | 0.29 |
| 158 | 158 | 0.892 |
| 159 | 159 | 0.0879 |
| 16 | 16 | 0.979 |
| 160 | 160 | 0.459 |
| 161 | 161 | 0.575 |
| 162 | 162 | 0.417 |
| 163 | 163 | 0.703 |
| 164 | 164 | 0.109 |
| 165 | 165 | 0.845 |
| 166 | 166 | 0.251 |
| 167 | 167 | 1 |
| 168 | 168 | 0.417 |
| 169 | 169 | 0.26 |
| 17 | 17 | 0.888 |
| 18 | 18 | 0.0444 |
| 19 | 19 | 0.115 |
| 2 | 2 | 0.00904 |
| 20 | 20 | 0.149 |
| 21 | 21 | 0.597 |
| 22 | 22 | 0.891 |
| 23 | 23 | 0.737 |
| 24 | 24 | 0.272 |
| 25 | 25 | 0.141 |
| 26 | 26 | 0.379 |
| 27 | 27 | 0.988 |
| 28 | 28 | 0.717 |
| 29 | 29 | 0.0663 |
| 3 | 3 | 0.174 |
| 30 | 30 | 0.112 |
| 31 | 31 | 0.744 |
| 32 | 32 | 0.0767 |
| 33 | 33 | 0.13 |
| 34 | 34 | 0.986 |
| 35 | 35 | 0.792 |
| 36 | 36 | 0.00832 |
| 37 | 37 | 0.378 |
| 38 | 38 | 0.744 |
| 39 | 39 | 0.319 |
| 4 | 4 | 0.126 |
| 40 | 40 | 0.0183 |
| 41 | 41 | 0.00232 |
| 42 | 42 | 0.0586 |
| 43 | 43 | 0.338 |
| 44 | 44 | 0.961 |
| 45 | 45 | 0.657 |
| 46 | 46 | 0.144 |
| 47 | 47 | 0.242 |
| 48 | 48 | 0.365 |
| 49 | 49 | 0.252 |
| 5 | 5 | 0.214 |
| 50 | 50 | 0.431 |
| 51 | 51 | 0.287 |
| 52 | 52 | 0.0559 |
| 53 | 53 | 0.473 |
| 54 | 54 | 0.541 |
| 55 | 55 | 0.382 |
| 56 | 56 | 0.841 |
| 57 | 57 | 0.747 |
| 58 | 58 | 0.894 |
| 59 | 59 | 0.548 |
| 6 | 6 | 0.493 |
| 60 | 60 | 0.943 |
| 61 | 61 | 0.558 |
| 62 | 62 | 0.491 |
| 63 | 63 | 0.998 |
| 64 | 64 | 0.358 |
| 65 | 65 | 0.803 |
| 66 | 66 | 0.0131 |
| 67 | 67 | 0.609 |
| 68 | 68 | 0.869 |
| 69 | 69 | 0.561 |
| 7 | 7 | 0.109 |
| 70 | 70 | 0.727 |
| 71 | 71 | 0.551 |
| 72 | 72 | 0.31 |
| 73 | 73 | 0.0679 |
| 74 | 74 | 0.383 |
| 75 | 75 | 0.0975 |
| 76 | 76 | 0.12 |
| 77 | 77 | 0.121 |
| 78 | 78 | 0.842 |
| 79 | 79 | 0.773 |
| 8 | 8 | 0.975 |
| 80 | 80 | 0.0136 |
| 81 | 81 | 0.859 |
| 82 | 82 | 0.531 |
| 83 | 83 | 0.972 |
| 84 | 84 | 0.934 |
| 85 | 85 | 0.689 |
| 86 | 86 | 0.798 |
| 87 | 87 | 0.12 |
| 88 | 88 | 0.94 |
| 89 | 89 | 0.458 |
| 9 | 9 | 0.485 |
| 90 | 90 | 0.865 |
| 91 | 91 | 0.407 |
| 92 | 92 | 0.391 |
| 93 | 93 | 0.0605 |
| 94 | 94 | 0.0946 |
| 95 | 95 | 1.67385e-5 |
| 96 | 96 | 0.302 |
| 97 | 97 | 0.513 |
| 98 | 98 | 0.541 |
| 99 | 99 | 0.489 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12851
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000473 (testis)
0000998 (seminal vesicle)
0000991 (gonad)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0006868 (seminal fluid secreting gland)
0005904 (duct of male reproductive system)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0002530 (gland)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
0006947 (male genital duct)
0004054 (internal male genitalia)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010201 (human seminal vesicle - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0005754 (rostral part of nephrogenic cord)
UBERON:0007687 (kidney field)
UBERON:0007297 (presumptive pronephric mesoderm)
UBERON:0010316 (germ layer / neural crest)
