FF:10058-101H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0003126,UBERON:0003127,UBERON:0002100 | |DRA_sample_Accession=CAGE@SAMD00005467 | ||
|accession_numbers=CAGE;DRX008754;DRR009626;DRZ001051;DRZ002436;DRZ012401;DRZ013786 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0003126,UBERON:0003127,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010058 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.26!178.97!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.94!85.49!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.90!78.18!ELF3;;chr6:34524093..34524135,-!p1@SPDEF!1.90!77.84!SPDEF;;chr19:46801639..46801699,+!p1@HIF3A!1.82!64.54!HIF3A;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.78!59.55!PEG3;;chr22:29196433..29196445,-!p4@XBP1!1.70!54.22!XBP1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.69!47.90!TFCP2L1;;chr12:52437488..52437507,+!p2@NR4A1!1.68!46.57!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!1.63!73.85!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!1.60!55.22!ZBTB16;;chr2:19558373..19558392,-!p1@OSR1!1.51!83.83!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.51!75.51!EBF1;;chr1:170632285..170632309,+!p1@PRRX1!1.50!34.60!PRRX1;;chr8:23540441..23540466,-!p1@NKX3-1!1.47!55.89!NKX3-1;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!44.91!FOXQ1;;chr8:25902876..25902936,-!p1@EBF2!1.46!27.94!EBF2;;chr17:53342311..53342400,+!p1@HLF!1.45!31.27!HLF;;chr11:34535297..34535317,-!p1@ELF5!1.41!24.62!ELF5;;chr22:38380543..38380569,-!p1@SOX10!1.40!24.28!SOX10;;chr3:181429704..181429722,+!p1@SOX2!1.40!23.95!SOX2;;chr1:40105299..40105326,-!p1@HEYL!1.40!23.95!HEYL;;chr20:62680984..62680999,-!p1@SOX18!1.38!30.60!SOX18;;chr14:37131058..37131139,+!p1@PAX9!1.38!22.95!PAX9;;chrY:21906594..21906622,-!p1@KDM5D!1.38!22.95!KDM5D;;chr6:134210243..134210257,+!p1@TCF21!1.37!22.29!TCF21;;chr14:38064429..38064486,-!p1@FOXA1!1.36!21.96!FOXA1;;chr19:46800289..46800327,+!p2@HIF3A!1.34!20.96!HIF3A;;chr21:39870339..39870443,-!p1@ERG!1.34!20.96!ERG;;chr17:74137321..74137337,-!p1@FOXJ1!1.33!20.62!FOXJ1;;chr17:80797886..80797906,-!p1@ZNF750!1.33!20.29!ZNF750;;chr11:34642656..34642667,+!p2@EHF!1.33!20.29!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.31!30.27!XBP1;;chr5:2751762..2751784,-!p1@IRX2!1.31!19.29!IRX2;;chr7:15726296..15726315,-!p1@MEOX2!1.30!18.96!MEOX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.29!18.63!MLXIPL;;chr10:131762504..131762555,-!p1@EBF3!1.29!18.30!EBF3;;chr16:79634624..79634642,-!p1@MAF!1.27!67.86!MAF;;chr14:61116183..61116208,-!p1@SIX1!1.27!65.87!SIX1;;chr7:113726357..113726443,+!p1@FOXP2!1.27!30.27!FOXP2;;chr8:102504651..102504683,+!p1@GRHL2!1.27!17.63!GRHL2;;chr11:129245526..129245553,+!p1@BARX2!1.27!17.63!BARX2;;chr8:10588010..10588030,-!p1@SOX7!1.25!16.63!SOX7;;chr7:100065686..100065701,-!p2@TSC22D4!1.24!16.30!TSC22D4;;chr6:1389789..1389821,+!p1@FOXF2!1.23!21.96!FOXF2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.62!PRRX1;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.96!IRF6;;chr1:203055129..203055147,-!p1@MYOG!1.23!15.97!MYOG;;chr5:134369879..134369898,-!p2@PITX1!1.23!15.97!PITX1;;chr7:19157248..19157268,-!p1@TWIST1!1.22!43.25!TWIST1;;chr1:61548374..61548415,+!p4@NFIA!1.21!28.28!NFIA;;chr18:22932080..22932170,-!p1@ZNF521!1.20!62.87!ZNF521;;chr3:189507432..189507459,+!p1@TP63!1.20!14.97!TP63;;chr1:61548225..61548299,+!p1@NFIA!1.18!180.30!NFIA;;chr11:34535332..34535347,-!p2@ELF5!1.18!14.30!ELF5;;chr20:50179368..50179392,-!p2@NFATC2!1.17!17.63!NFATC2;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.64!PRRX2;;chr22:19748231..19748317,+!p1@TBX1!1.17!13.64!TBX1;;chr4:57547454..57547469,-!p1@HOPX!1.17!13.64!HOPX;;chr6:144329384..144329405,-!p1@PLAGL1!1.16!155.02!PLAGL1;;chr11:34645791..34645836,+!p3@EHF!1.16!13.31!EHF;;chr6:1610293..1610310,+!p1@FOXC1!1.15!21.96!FOXC1;;chr3:126076242..126076257,-!p1@KLF15!1.15!16.30!KLF15;;chr1:170633262..170633285,+!p3@PRRX1!1.15!14.97!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.14!14.97!MECOM;;chr16:86544113..86544145,+!p1@FOXF1!1.12!15.30!FOXF1;;chr8:55370487..55370503,+!p1@SOX17!1.12!12.31!SOX17;;chr9:102584159..102584174,+!p2@NR4A3!1.11!21.29!NR4A3;;chr20:55204351..55204377,+!p1@TFAP2C!1.11!15.30!TFAP2C;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.29!ZEB2;;chr18:45663490..45663528,-!p2@ZBTB7C!1.10!11.64!ZBTB7C;;chr8:106330656..106330684,+!p1@ZFPM2!1.09!29.94!ZFPM2;;chr13:73633131..73633149,+!p1@KLF5!1.08!118.09!KLF5;;chr16:79634595..79634620,-!p2@MAF!1.08!20.29!MAF;;chr6:34524049..34524089,-!p2@SPDEF!1.08!10.98!SPDEF;;chr7:97840743..97840786,+!p1@BHLHA15!1.08!10.98!BHLHA15;;chr1:151804244..151804310,-!p1@RORC!1.08!10.98!RORC;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.28!HIC1;;chr11:125034640..125034655,+!p1@PKNOX2!1.07!10.65!PKNOX2;;chr2:66662281..66662308,+!p1@MEIS1!1.06!36.93!MEIS1;;chr15:57511609..57511651,+!p2@TCF12!1.06!17.63!TCF12;;chr1:61548069..61548102,+!p3@NFIA!1.05!24.95!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!24.28!ZBTB20;;chr6:144289132..144289134,-!p3@PLAGL1!1.05!24.28!PLAGL1;;chr3:126076264..126076305,-!p2@KLF15!1.05!14.30!KLF15;;chr9:132427972..132428056,+!p1@PRRX2!1.05!13.31!PRRX2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.05!10.31!RUNX1T1;;chr15:96873984..96873999,+!p3@NR2F2!1.04!73.85!NR2F2;;chr5:50679228..50679288,+!p1@ISL1!1.04!9.98!ISL1;;chr1:170632683..170632696,+!p12@PRRX1!1.04!9.98!PRRX1;;chr2:180524914..180524925,-!p17@ZNF385B!1.04!9.98!ZNF385B;;chr3:181429741..181429767,+!p2@SOX2!1.04!9.98!SOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.56!CREB3L1;;chr1:214161272..214161322,+!p1@PROX1!1.03!13.64!PROX1;;chr16:1031762..1031781,+!p1@SOX8!1.03!9.65!SOX8;;chr12:96588368..96588394,+!p3@ELK3!1.02!25.95!ELK3;;chr5:134369905..134369972,-!p1@PITX1!1.00!13.97!PITX1;;chr5:2751785..2751808,-!p2@IRX2!1.00!8.98!IRX2;;chr12:24102576..24102623,-!p2@SOX5!1.00!8.98!SOX5;;chr17:41739283..41739297,-!p1@MEOX1!1.00!8.98!MEOX1;;chr22:29196547..29196563,-!p2@XBP1!0.99!327.67!XBP1;;chr4:174451370..174451387,-!p1@HAND2!0.98!8.65!HAND2;;chr11:113930401..113930422,+!p3@ZBTB16!0.98!8.65!ZBTB16;;chr5:158527104..158527135,-!p4@EBF1!0.98!8.65!EBF1;;chr5:172662197..172662216,-!p1@NKX2-5!0.98!8.65!NKX2-5;;chr9:14180778..14180808,-!p15@NFIB!0.98!8.65!NFIB;;chr6:19837592..19837621,+!p1@ID4!0.97!52.89!ID4;;chr2:60780753..60780800,-!p1@BCL11A!0.97!42.58!BCL11A;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.30!CREB3L1;;chr2:10091815..10091864,+!p1@GRHL1!0.97!11.31!GRHL1;;chr3:21792682..21792720,-!p1@ZNF385D!0.97!8.32!ZNF385D;;chr12:81101404..81101421,+!p1@MYF6!0.97!8.32!MYF6;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.32!SIM2;;chr18:77155922..77155939,+!p1@NFATC1!0.96!22.62!NFATC1;;chr6:91006518..91006570,-!p1@BACH2!0.96!18.96!BACH2;;chr20:51588873..51588953,+!p1@TSHZ2!0.96!10.98!TSHZ2;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.98!PRRX1;;chrX:131623044..131623089,-!p1@MBNL3!0.95!34.26!MBNL3;;chr18:42260840..42260860,+!p2@SETBP1!0.95!7.98!SETBP1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.95!7.98!RUNX1T1;;chr9:14314131..14314147,-!p2@NFIB!0.94!44.91!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.94!22.95!NFIA;;chr13:72441315..72441454,-!p1@DACH1!0.94!15.97!DACH1;;chr8:99956662..99956684,+!p1@OSR2!0.94!11.98!OSR2;;chr5:158526459..158526481,-!p2@EBF1!0.94!10.31!EBF1;;chr12:125003087..125003141,-!p4@NCOR2!0.94!9.98!NCOR2;;chr13:72441074..72441172,-!p2@DACH1!0.94!7.65!DACH1;;chr3:114866084..114866118,-!p2@ZBTB20!0.93!28.28!ZBTB20;;chr2:239756671..239756732,+!p1@TWIST2!0.93!24.95!TWIST2;;chr1:61924375..61924380,+!p6@NFIA!0.93!10.65!NFIA;;chrX:107018969..107019024,-!p6@TSC22D3!0.93!10.65!TSC22D3;;chr19:13134772..13134822,+!p2@NFIX!0.92!10.98!NFIX;;chr2:45236540..45236577,-!p1@SIX2!0.92!7.32!SIX2;;chr3:114819101..114819121,-!p7@ZBTB20!0.92!7.32!ZBTB20;;chr12:81110684..81110700,+!p1@MYF5!0.92!7.32!MYF5;;chr1:170632477..170632506,+!p6@PRRX1!0.92!7.32!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.32!PRRX1;;chr17:70117153..70117174,+!p1@SOX9!0.91!77.51!SOX9;;chr2:66662249..66662267,+!p2@MEIS1!0.91!28.61!MEIS1;;chr3:21792585..21792625,-!p2@ZNF385D!0.91!7.98!ZNF385D;;chr17:7492684..7492778,-!p2@SOX15!0.90!14.97!SOX15;;chr6:91006575..91006602,-!p2@BACH2!0.90!10.65!BACH2;;chr5:71803177..71803255,-!p1@ZNF366!0.90!6.99!ZNF366;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.99!MEOX2;;chr7:27142290..27142310,-!p1@HOXA2!0.90!6.99!HOXA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.89!11.64!TFAP2A;;chr8:80679993..80680011,-!p1@HEY1!0.89!9.98!HEY1;;chr8:48650715..48650735,-!p1@CEBPD!0.88!889.53!CEBPD;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.02!AEBP1;;chr3:12330560..12330579,+!p1@PPARG!0.88!7.65!PPARG;;chr2:66662396..66662407,+!p4@MEIS1!0.88!6.65!MEIS1;;chr5:3595977..3595999,+!p1@IRX1!0.88!6.65!IRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.88!6.65!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.65!ZFY;;chr7:44143997..44144008,+!p3@AEBP1!0.87!8.32!AEBP1;;chr1:61547405..61547434,+!p11@NFIA!0.86!6.32!NFIA;;chr2:145277640..145277771,-!p1@ZEB2!0.85!87.49!ZEB2;;chr1:164528410..164528428,+!p1@PBX1!0.84!47.24!PBX1;;chr10:70320074..70320106,+!p1@TET1!0.84!12.31!TET1;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!9.98!ZBTB16;;chrX:84498989..84499003,+!p1@ZNF711!0.84!8.32!ZNF711;;chr14:29235961..29236008,+!p1@FOXG1!0.84!5.99!FOXG1;;chr9:14314566..14314618,-!p1@NFIB!0.83!74.85!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!0.83!47.24!MEF2C;;chr4:38665883..38665922,+!p3@KLF3!0.83!22.95!KLF3;;chr2:46524897..46524911,+!p2@EPAS1!0.83!16.97!EPAS1;;chr15:61521417..61521460,-!p2@RORA!0.83!13.64!RORA;;chr2:66662895..66662907,+!p3@MEIS1!0.83!7.32!MEIS1;;chr8:106330696..106330719,+!p2@ZFPM2!0.82!7.32!ZFPM2;;chr9:16870659..16870675,-!p2@BNC2!0.82!6.99!BNC2;;chrY:21906761..21906810,-!p2@KDM5D!0.82!5.66!KDM5D;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.66!IRX1;;chr9:100615499..100615519,+!p1@FOXE1!0.82!5.66!FOXE1;;chr1:10856639..10856662,-!p2@CASZ1!0.82!5.66!CASZ1;;chr1:170632439..170632465,+!p11@PRRX1!0.82!5.66!PRRX1;;chr3:71632864..71632885,-!p4@FOXP1!0.81!19.96!FOXP1;;chr16:54320675..54320715,-!p1@IRX3!0.81!12.31!IRX3;;chr2:166326200..166326216,+!p1@CSRNP3!0.81!8.32!CSRNP3;;chr9:14083467..14083483,-!p4@NFIB!0.80!13.97!NFIB;;chr3:71355163..71355209,-!p5@FOXP1!0.80!7.65!FOXP1;;chr19:57183114..57183145,-!p1@ZNF835!0.80!5.99!ZNF835;;chr1:216978721..216978728,-!p13@ESRRG!0.80!5.32!ESRRG;;chr20:51589133..51589159,+!p2@TSHZ2!0.80!5.32!TSHZ2;;chr22:41763452..41763466,+!p2@TEF!0.80!5.32!TEF;;chr3:25470156..25470227,+!p2@RARB!0.80!5.32!RARB;;chr6:152011654..152011682,+!p1@ESR1!0.80!5.32!ESR1;;chrX:106960285..106960299,-!p1@TSC22D3!0.79!152.03!T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| |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.26!178.97!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.94!85.49!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.90!78.18!ELF3;;chr6:34524093..34524135,-!p1@SPDEF!1.90!77.84!SPDEF;;chr19:46801639..46801699,+!p1@HIF3A!1.82!64.54!HIF3A;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.78!59.55!PEG3;;chr22:29196433..29196445,-!p4@XBP1!1.70!54.22!XBP1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.69!47.90!TFCP2L1;;chr12:52437488..52437507,+!p2@NR4A1!1.68!46.57!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!1.63!73.85!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!1.60!55.22!ZBTB16;;chr2:19558373..19558392,-!p1@OSR1!1.51!83.83!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.51!75.51!EBF1;;chr1:170632285..170632309,+!p1@PRRX1!1.50!34.60!PRRX1;;chr8:23540441..23540466,-!p1@NKX3-1!1.47!55.89!NKX3-1;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!44.91!FOXQ1;;chr8:25902876..25902936,-!p1@EBF2!1.46!27.94!EBF2;;chr17:53342311..53342400,+!p1@HLF!1.45!31.27!HLF;;chr11:34535297..34535317,-!p1@ELF5!1.41!24.62!ELF5;;chr22:38380543..38380569,-!p1@SOX10!1.40!24.28!SOX10;;chr3:181429704..181429722,+!p1@SOX2!1.40!23.95!SOX2;;chr1:40105299..40105326,-!p1@HEYL!1.40!23.95!HEYL;;chr20:62680984..62680999,-!p1@SOX18!1.38!30.60!SOX18;;chr14:37131058..37131139,+!p1@PAX9!1.38!22.95!PAX9;;chrY:21906594..21906622,-!p1@KDM5D!1.38!22.95!KDM5D;;chr6:134210243..134210257,+!p1@TCF21!1.37!22.29!TCF21;;chr14:38064429..38064486,-!p1@FOXA1!1.36!21.96!FOXA1;;chr19:46800289..46800327,+!p2@HIF3A!1.34!20.96!HIF3A;;chr21:39870339..39870443,-!p1@ERG!1.34!20.96!ERG;;chr17:74137321..74137337,-!p1@FOXJ1!1.33!20.62!FOXJ1;;chr17:80797886..80797906,-!p1@ZNF750!1.33!20.29!ZNF750;;chr11:34642656..34642667,+!p2@EHF!1.33!20.29!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.31!30.27!XBP1;;chr5:2751762..2751784,-!p1@IRX2!1.31!19.29!IRX2;;chr7:15726296..15726315,-!p1@MEOX2!1.30!18.96!MEOX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.29!18.63!MLXIPL;;chr10:131762504..131762555,-!p1@EBF3!1.29!18.30!EBF3;;chr16:79634624..79634642,-!p1@MAF!1.27!67.86!MAF;;chr14:61116183..61116208,-!p1@SIX1!1.27!65.87!SIX1;;chr7:113726357..113726443,+!p1@FOXP2!1.27!30.27!FOXP2;;chr8:102504651..102504683,+!p1@GRHL2!1.27!17.63!GRHL2;;chr11:129245526..129245553,+!p1@BARX2!1.27!17.63!BARX2;;chr8:10588010..10588030,-!p1@SOX7!1.25!16.63!SOX7;;chr7:100065686..100065701,-!p2@TSC22D4!1.24!16.30!TSC22D4;;chr6:1389789..1389821,+!p1@FOXF2!1.23!21.96!FOXF2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.62!PRRX1;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.96!IRF6;;chr1:203055129..203055147,-!p1@MYOG!1.23!15.97!MYOG;;chr5:134369879..134369898,-!p2@PITX1!1.23!15.97!PITX1;;chr7:19157248..19157268,-!p1@TWIST1!1.22!43.25!TWIST1;;chr1:61548374..61548415,+!p4@NFIA!1.21!28.28!NFIA;;chr18:22932080..22932170,-!p1@ZNF521!1.20!62.87!ZNF521;;chr3:189507432..189507459,+!p1@TP63!1.20!14.97!TP63;;chr1:61548225..61548299,+!p1@NFIA!1.18!180.30!NFIA;;chr11:34535332..34535347,-!p2@ELF5!1.18!14.30!ELF5;;chr20:50179368..50179392,-!p2@NFATC2!1.17!17.63!NFATC2;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.64!PRRX2;;chr22:19748231..19748317,+!p1@TBX1!1.17!13.64!TBX1;;chr4:57547454..57547469,-!p1@HOPX!1.17!13.64!HOPX;;chr6:144329384..144329405,-!p1@PLAGL1!1.16!155.02!PLAGL1;;chr11:34645791..34645836,+!p3@EHF!1.16!13.31!EHF;;chr6:1610293..1610310,+!p1@FOXC1!1.15!21.96!FOXC1;;chr3:126076242..126076257,-!p1@KLF15!1.15!16.30!KLF15;;chr1:170633262..170633285,+!p3@PRRX1!1.15!14.97!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.14!14.97!MECOM;;chr16:86544113..86544145,+!p1@FOXF1!1.12!15.30!FOXF1;;chr8:55370487..55370503,+!p1@SOX17!1.12!12.31!SOX17;;chr9:102584159..102584174,+!p2@NR4A3!1.11!21.29!NR4A3;;chr20:55204351..55204377,+!p1@TFAP2C!1.11!15.30!TFAP2C;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.29!ZEB2;;chr18:45663490..45663528,-!p2@ZBTB7C!1.10!11.64!ZBTB7C;;chr8:106330656..106330684,+!p1@ZFPM2!1.09!29.94!ZFPM2;;chr13:73633131..73633149,+!p1@KLF5!1.08!118.09!KLF5;;chr16:79634595..79634620,-!p2@MAF!1.08!20.29!MAF;;chr6:34524049..34524089,-!p2@SPDEF!1.08!10.98!SPDEF;;chr7:97840743..97840786,+!p1@BHLHA15!1.08!10.98!BHLHA15;;chr1:151804244..151804310,-!p1@RORC!1.08!10.98!RORC;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.28!HIC1;;chr11:125034640..125034655,+!p1@PKNOX2!1.07!10.65!PKNOX2;;chr2:66662281..66662308,+!p1@MEIS1!1.06!36.93!MEIS1;;chr15:57511609..57511651,+!p2@TCF12!1.06!17.63!TCF12;;chr1:61548069..61548102,+!p3@NFIA!1.05!24.95!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!24.28!ZBTB20;;chr6:144289132..144289134,-!p3@PLAGL1!1.05!24.28!PLAGL1;;chr3:126076264..126076305,-!p2@KLF15!1.05!14.30!KLF15;;chr9:132427972..132428056,+!p1@PRRX2!1.05!13.31!PRRX2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.05!10.31!RUNX1T1;;chr15:96873984..96873999,+!p3@NR2F2!1.04!73.85!NR2F2;;chr5:50679228..50679288,+!p1@ISL1!1.04!9.98!ISL1;;chr1:170632683..170632696,+!p12@PRRX1!1.04!9.98!PRRX1;;chr2:180524914..180524925,-!p17@ZNF385B!1.04!9.98!ZNF385B;;chr3:181429741..181429767,+!p2@SOX2!1.04!9.98!SOX2;;chr11:46299199..46299233,+!p1@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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10058-101H4 | |id=FF:10058-101H4 | ||
|is_a=EFO:0002091;;FF:0010058 | |is_a=EFO:0002091;;FF:0010058 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11766 | |||
|library_id_phase_based=2:CNhs11766 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10058 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10058 | |||
|name=trachea, fetal, donor1 | |name=trachea, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11766,LSID820,release009,COMPLETED | |profile_hcage=CNhs11766,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Trachea | |rna_catalog_number=Cat:RtHFN: Trachea | ||
| Line 58: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 101: | ||
|top_motifs=ZNF384:3.37911398153;TBP:3.33213708954;MEF2{A,B,C,D}:3.13503764265;SOX5:2.8565356611;MYBL2:2.63113227017;TAL1_TCF{3,4,12}:2.43662599355;IKZF2:2.37208824102;FOXL1:2.2813696425;SPZ1:2.23478172335;MAZ:2.15544766394;HMGA1,2:2.05051182377;GCM1,2:2.02954183912;GLI1..3:1.96940907822;LMO2:1.95942733428;EP300:1.91367094479;ZIC1..3:1.8815383318;AIRE:1.85854818792;HIC1:1.82414837678;GATA4:1.75684806398;IKZF1:1.70014120709;ATF6:1.69581337396;HOX{A4,D4}:1.6849171162;NR1H4:1.6695324384;PATZ1:1.64091088397;TFAP2{A,C}:1.61487190934;BPTF:1.61317965476;TOPORS:1.58929931504;KLF4:1.58803684553;DBP:1.56444159108;XBP1:1.55882441565;SMAD1..7,9:1.5553612227;MZF1:1.54559275065;FOXP1:1.53885154464;TLX1..3_NFIC{dimer}:1.49552241165;RXRA_VDR{dimer}:1.47472327454;SP1:1.46891818563;NFATC1..3:1.46498381416;TLX2:1.43460585069;NR6A1:1.42295138086;MED-1{core}:1.41584823782;PRDM1:1.3935144786;POU6F1:1.39215844227;TBX4,5:1.38114870111;SNAI1..3:1.38110077579;TFCP2:1.37113739537;GTF2I:1.36056944489;FOXO1,3,4:1.35039762269;ESR1:1.34438033449;EGR1..3:1.26478251629;TGIF1:1.2508099307;NKX2-1,4:1.21685578984;TFAP4:1.21588548138;ZNF238:1.21514365375;MYFfamily:1.19081728231;FOXM1:1.1789191772;FOXA2:1.16617950246;TEAD1:1.16123088489;GFI1B:1.13556848853;PAX5:1.13402177345;SRF:1.12987534638;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.10302017333;POU3F1..4:1.1006406376;FOX{D1,D2}:1.0785687995;TFAP2B:1.07314066282;ZNF423:1.05319742342;MTF1:1.02713468936;FOXD3:1.02558575533;ATF2:1.01791908987;LHX3,4:1.01488586108;CDC5L:1.00125202731;RBPJ:0.996944665513;PAX6:0.929518960811;NKX3-2:0.929295801253;BREu{core}:0.928147915681;GTF2A1,2:0.911499108816;NKX3-1:0.896123312115;RREB1:0.881445259997;NR5A1,2:0.845836348974;RFX2..5_RFXANK_RFXAP:0.832521726715;XCPE1{core}:0.82477810927;ZEB1:0.824417085492;MYOD1:0.822700537179;MTE{core}:0.819907540486;NKX2-3_NKX2-5:0.811569277739;HMX1:0.795095750833;AR:0.793400008741;RFX1:0.767878194767;UFEwm:0.735878837468;NHLH1,2:0.722808754327;CDX1,2,4:0.715169266247;ZBTB16:0.685613776616;SOX2:0.68460400754;IRF7:0.683123488934;CUX2:0.676075355244;PITX1..3:0.673289265316;HOX{A6,A7,B6,B7}:0.663572515927;T:0.634181631323;POU5F1:0.568675321468;PBX1:0.558334239704;ALX4:0.548336043739;HSF1,2:0.548178254908;POU1F1:0.541500693428;MAFB:0.532110411176;NKX6-1,2:0.527392813563;VSX1,2:0.513849138997;GZF1:0.460515674176;RORA:0.445021225829;ZFP161:0.434123569573;FOXQ1:0.431221027115;REST:0.424964734931;STAT2,4,6:0.406174227011;ZNF148:0.371083527646;GATA6:0.365201288121;SOX{8,9,10}:0.362044844861;GFI1:0.355011619209;NR3C1:0.323309177561;TEF:0.297527422453;FOXN1:0.263655986751;FOX{F1,F2,J1}:0.258174663954;HAND1,2:0.244136771492;SOX17:0.238157208402;HIF1A:0.16032463936;ALX1:0.145237897366;JUN:0.109452678426;TP53:0.0806845658233;NFIX:0.0685322919983;NANOG:0.0635219890316;EVI1:0.053708282759;NANOG{mouse}:0.0422687760758;ARID5B:0.0371821021905;HES1:0.0205911009494;ZBTB6:0.0033614982527;IRF1,2:-0.0312777530062;ETS1,2:-0.0664351213658;ESRRA:-0.0694522520736;NFIL3:-0.0779604149562;HBP1_HMGB_SSRP1_UBTF:-0.117706668405;NFE2L1:-0.14564825856;HOX{A5,B5}:-0.149544317826;EBF1:-0.153084569241;FOXP3:-0.173398890688;LEF1_TCF7_TCF7L1,2:-0.205280509099;PAX4:-0.214839546699;RXR{A,B,G}:-0.227579202714;PAX1,9:-0.233677171485;YY1:-0.235205460457;ZNF143:-0.238197166053;PDX1:-0.24460794687;FOX{I1,J2}:-0.251030656705;STAT1,3:-0.25189224256;STAT5{A,B}:-0.277061856536;HNF1A:-0.279757787543;DMAP1_NCOR{1,2}_SMARC:-0.330849482926;CREB1:-0.337688299097;SPI1:-0.375585054685;ELF1,2,4:-0.425512548963;EN1,2:-0.462220033854;ATF4:-0.490246360398;SREBF1,2:-0.492102713404;HNF4A_NR2F1,2:-0.499858573789;NKX2-2,8:-0.505101741067;SPIB:-0.534132209612;ADNP_IRX_SIX_ZHX:-0.53617083546;NFY{A,B,C}:-0.549528679346;PAX2:-0.568623504601;FOSL2:-0.570955126351;CEBPA,B_DDIT3:-0.581804358359;TFDP1:-0.608191016443;NFKB1_REL_RELA:-0.628283232209;E2F1..5:-0.633478767073;PRRX1,2:-0.636938058804;NRF1:-0.641667302953;PAX3,7:-0.65809284805;HLF:-0.672482904884;ATF5_CREB3:-0.691586563057;OCT4_SOX2{dimer}:-0.697414898851;ONECUT1,2:-0.705293181278;POU2F1..3:-0.727686287844;FOS_FOS{B,L1}_JUN{B,D}:-0.755360315454;AHR_ARNT_ARNT2:-0.782348362933;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.809641725;CRX:-0.8100543311;BACH2:-0.84075484586;RUNX1..3:-0.876438134273;HOXA9_MEIS1:-0.884618288991;bHLH_family:-0.94383682562;NFE2:-1.04384847733;NFE2L2:-1.05704194262;MYB:-1.33114768654;ELK1,4_GABP{A,B1}:-1.35543755196;PAX8:-1.41323233027;PPARG:-1.73482606635 | |top_motifs=ZNF384:3.37911398153;TBP:3.33213708954;MEF2{A,B,C,D}:3.13503764265;SOX5:2.8565356611;MYBL2:2.63113227017;TAL1_TCF{3,4,12}:2.43662599355;IKZF2:2.37208824102;FOXL1:2.2813696425;SPZ1:2.23478172335;MAZ:2.15544766394;HMGA1,2:2.05051182377;GCM1,2:2.02954183912;GLI1..3:1.96940907822;LMO2:1.95942733428;EP300:1.91367094479;ZIC1..3:1.8815383318;AIRE:1.85854818792;HIC1:1.82414837678;GATA4:1.75684806398;IKZF1:1.70014120709;ATF6:1.69581337396;HOX{A4,D4}:1.6849171162;NR1H4:1.6695324384;PATZ1:1.64091088397;TFAP2{A,C}:1.61487190934;BPTF:1.61317965476;TOPORS:1.58929931504;KLF4:1.58803684553;DBP:1.56444159108;XBP1:1.55882441565;SMAD1..7,9:1.5553612227;MZF1:1.54559275065;FOXP1:1.53885154464;TLX1..3_NFIC{dimer}:1.49552241165;RXRA_VDR{dimer}:1.47472327454;SP1:1.46891818563;NFATC1..3:1.46498381416;TLX2:1.43460585069;NR6A1:1.42295138086;MED-1{core}:1.41584823782;PRDM1:1.3935144786;POU6F1:1.39215844227;TBX4,5:1.38114870111;SNAI1..3:1.38110077579;TFCP2:1.37113739537;GTF2I:1.36056944489;FOXO1,3,4:1.35039762269;ESR1:1.34438033449;EGR1..3:1.26478251629;TGIF1:1.2508099307;NKX2-1,4:1.21685578984;TFAP4:1.21588548138;ZNF238:1.21514365375;MYFfamily:1.19081728231;FOXM1:1.1789191772;FOXA2:1.16617950246;TEAD1:1.16123088489;GFI1B:1.13556848853;PAX5:1.13402177345;SRF:1.12987534638;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.10302017333;POU3F1..4:1.1006406376;FOX{D1,D2}:1.0785687995;TFAP2B:1.07314066282;ZNF423:1.05319742342;MTF1:1.02713468936;FOXD3:1.02558575533;ATF2:1.01791908987;LHX3,4:1.01488586108;CDC5L:1.00125202731;RBPJ:0.996944665513;PAX6:0.929518960811;NKX3-2:0.929295801253;BREu{core}:0.928147915681;GTF2A1,2:0.911499108816;NKX3-1:0.896123312115;RREB1:0.881445259997;NR5A1,2:0.845836348974;RFX2..5_RFXANK_RFXAP:0.832521726715;XCPE1{core}:0.82477810927;ZEB1:0.824417085492;MYOD1:0.822700537179;MTE{core}:0.819907540486;NKX2-3_NKX2-5:0.811569277739;HMX1:0.795095750833;AR:0.793400008741;RFX1:0.767878194767;UFEwm:0.735878837468;NHLH1,2:0.722808754327;CDX1,2,4:0.715169266247;ZBTB16:0.685613776616;SOX2:0.68460400754;IRF7:0.683123488934;CUX2:0.676075355244;PITX1..3:0.673289265316;HOX{A6,A7,B6,B7}:0.663572515927;T:0.634181631323;POU5F1:0.568675321468;PBX1:0.558334239704;ALX4:0.548336043739;HSF1,2:0.548178254908;POU1F1:0.541500693428;MAFB:0.532110411176;NKX6-1,2:0.527392813563;VSX1,2:0.513849138997;GZF1:0.460515674176;RORA:0.445021225829;ZFP161:0.434123569573;FOXQ1:0.431221027115;REST:0.424964734931;STAT2,4,6:0.406174227011;ZNF148:0.371083527646;GATA6:0.365201288121;SOX{8,9,10}:0.362044844861;GFI1:0.355011619209;NR3C1:0.323309177561;TEF:0.297527422453;FOXN1:0.263655986751;FOX{F1,F2,J1}:0.258174663954;HAND1,2:0.244136771492;SOX17:0.238157208402;HIF1A:0.16032463936;ALX1:0.145237897366;JUN:0.109452678426;TP53:0.0806845658233;NFIX:0.0685322919983;NANOG:0.0635219890316;EVI1:0.053708282759;NANOG{mouse}:0.0422687760758;ARID5B:0.0371821021905;HES1:0.0205911009494;ZBTB6:0.0033614982527;IRF1,2:-0.0312777530062;ETS1,2:-0.0664351213658;ESRRA:-0.0694522520736;NFIL3:-0.0779604149562;HBP1_HMGB_SSRP1_UBTF:-0.117706668405;NFE2L1:-0.14564825856;HOX{A5,B5}:-0.149544317826;EBF1:-0.153084569241;FOXP3:-0.173398890688;LEF1_TCF7_TCF7L1,2:-0.205280509099;PAX4:-0.214839546699;RXR{A,B,G}:-0.227579202714;PAX1,9:-0.233677171485;YY1:-0.235205460457;ZNF143:-0.238197166053;PDX1:-0.24460794687;FOX{I1,J2}:-0.251030656705;STAT1,3:-0.25189224256;STAT5{A,B}:-0.277061856536;HNF1A:-0.279757787543;DMAP1_NCOR{1,2}_SMARC:-0.330849482926;CREB1:-0.337688299097;SPI1:-0.375585054685;ELF1,2,4:-0.425512548963;EN1,2:-0.462220033854;ATF4:-0.490246360398;SREBF1,2:-0.492102713404;HNF4A_NR2F1,2:-0.499858573789;NKX2-2,8:-0.505101741067;SPIB:-0.534132209612;ADNP_IRX_SIX_ZHX:-0.53617083546;NFY{A,B,C}:-0.549528679346;PAX2:-0.568623504601;FOSL2:-0.570955126351;CEBPA,B_DDIT3:-0.581804358359;TFDP1:-0.608191016443;NFKB1_REL_RELA:-0.628283232209;E2F1..5:-0.633478767073;PRRX1,2:-0.636938058804;NRF1:-0.641667302953;PAX3,7:-0.65809284805;HLF:-0.672482904884;ATF5_CREB3:-0.691586563057;OCT4_SOX2{dimer}:-0.697414898851;ONECUT1,2:-0.705293181278;POU2F1..3:-0.727686287844;FOS_FOS{B,L1}_JUN{B,D}:-0.755360315454;AHR_ARNT_ARNT2:-0.782348362933;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.809641725;CRX:-0.8100543311;BACH2:-0.84075484586;RUNX1..3:-0.876438134273;HOXA9_MEIS1:-0.884618288991;bHLH_family:-0.94383682562;NFE2:-1.04384847733;NFE2L2:-1.05704194262;MYB:-1.33114768654;ELK1,4_GABP{A,B1}:-1.35543755196;PAX8:-1.41323233027;PPARG:-1.73482606635 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10058-101H4;search_select_hide=table117:FF:10058-101H4 | |||
}} | }} | ||
Latest revision as of 12:18, 3 June 2020
| Name: | trachea, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11766 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11766
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11766
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0463 |
| 10 | 10 | 0.0424 |
| 100 | 100 | 0.683 |
| 101 | 101 | 0.728 |
| 102 | 102 | 0.41 |
| 103 | 103 | 0.102 |
| 104 | 104 | 0.623 |
| 105 | 105 | 0.819 |
| 106 | 106 | 0.977 |
| 107 | 107 | 0.133 |
| 108 | 108 | 0.47 |
| 109 | 109 | 0.00491 |
| 11 | 11 | 0.0924 |
| 110 | 110 | 0.127 |
| 111 | 111 | 0.0751 |
| 112 | 112 | 0.987 |
| 113 | 113 | 5.06755e-4 |
| 114 | 114 | 0.011 |
| 115 | 115 | 0.162 |
| 116 | 116 | 0.652 |
| 117 | 117 | 0.00824 |
| 118 | 118 | 0.0332 |
| 119 | 119 | 0.378 |
| 12 | 12 | 0.421 |
| 120 | 120 | 0.435 |
| 121 | 121 | 0.729 |
| 122 | 122 | 0.0994 |
| 123 | 123 | 0.522 |
| 124 | 124 | 0.161 |
| 125 | 125 | 0.38 |
| 126 | 126 | 0.532 |
| 127 | 127 | 0.198 |
| 128 | 128 | 0.612 |
| 129 | 129 | 0.289 |
| 13 | 13 | 0.185 |
| 130 | 130 | 0.948 |
| 131 | 131 | 0.601 |
| 132 | 132 | 0.0305 |
| 133 | 133 | 0.0985 |
| 134 | 134 | 0.606 |
| 135 | 135 | 0.655 |
| 136 | 136 | 0.178 |
| 137 | 137 | 0.344 |
| 138 | 138 | 0.363 |
| 139 | 139 | 0.295 |
| 14 | 14 | 0.722 |
| 140 | 140 | 0.753 |
| 141 | 141 | 0.521 |
| 142 | 142 | 0.701 |
| 143 | 143 | 0.00304 |
| 144 | 144 | 0.965 |
| 145 | 145 | 0.944 |
| 146 | 146 | 0.715 |
| 147 | 147 | 0.0937 |
| 148 | 148 | 0.302 |
| 149 | 149 | 0.773 |
| 15 | 15 | 0.0233 |
| 150 | 150 | 0.409 |
| 151 | 151 | 0.97 |
| 152 | 152 | 0.744 |
| 153 | 153 | 0.464 |
| 154 | 154 | 0.652 |
| 155 | 155 | 0.252 |
| 156 | 156 | 0.993 |
| 157 | 157 | 0.658 |
| 158 | 158 | 0.112 |
| 159 | 159 | 0.939 |
| 16 | 16 | 0.934 |
| 160 | 160 | 0.725 |
| 161 | 161 | 0.201 |
| 162 | 162 | 0.387 |
| 163 | 163 | 0.195 |
| 164 | 164 | 0.137 |
| 165 | 165 | 0.304 |
| 166 | 166 | 0.0823 |
| 167 | 167 | 0.0184 |
| 168 | 168 | 0.818 |
| 169 | 169 | 0.149 |
| 17 | 17 | 0.431 |
| 18 | 18 | 0.0254 |
| 19 | 19 | 0.504 |
| 2 | 2 | 0.133 |
| 20 | 20 | 0.11 |
| 21 | 21 | 0.588 |
| 22 | 22 | 0.482 |
| 23 | 23 | 0.812 |
| 24 | 24 | 0.175 |
| 25 | 25 | 0.464 |
| 26 | 26 | 0.0515 |
| 27 | 27 | 0.655 |
| 28 | 28 | 0.569 |
| 29 | 29 | 0.0204 |
| 3 | 3 | 0.188 |
| 30 | 30 | 0.08 |
| 31 | 31 | 0.94 |
| 32 | 32 | 1.75312e-4 |
| 33 | 33 | 0.194 |
| 34 | 34 | 0.644 |
| 35 | 35 | 0.147 |
| 36 | 36 | 0.03 |
| 37 | 37 | 0.0915 |
| 38 | 38 | 0.576 |
| 39 | 39 | 0.455 |
| 4 | 4 | 0.385 |
| 40 | 40 | 0.048 |
| 41 | 41 | 0.0635 |
| 42 | 42 | 0.202 |
| 43 | 43 | 0.0972 |
| 44 | 44 | 0.763 |
| 45 | 45 | 0.649 |
| 46 | 46 | 0.15 |
| 47 | 47 | 0.0636 |
| 48 | 48 | 0.201 |
| 49 | 49 | 0.0722 |
| 5 | 5 | 0.372 |
| 50 | 50 | 0.586 |
| 51 | 51 | 0.44 |
| 52 | 52 | 0.23 |
| 53 | 53 | 0.964 |
| 54 | 54 | 0.74 |
| 55 | 55 | 0.226 |
| 56 | 56 | 0.729 |
| 57 | 57 | 0.447 |
| 58 | 58 | 0.304 |
| 59 | 59 | 0.632 |
| 6 | 6 | 0.987 |
| 60 | 60 | 0.766 |
| 61 | 61 | 0.125 |
| 62 | 62 | 0.228 |
| 63 | 63 | 0.954 |
| 64 | 64 | 0.248 |
| 65 | 65 | 0.871 |
| 66 | 66 | 0.0116 |
| 67 | 67 | 0.368 |
| 68 | 68 | 0.526 |
| 69 | 69 | 0.538 |
| 7 | 7 | 0.452 |
| 70 | 70 | 0.122 |
| 71 | 71 | 0.0524 |
| 72 | 72 | 0.249 |
| 73 | 73 | 0.176 |
| 74 | 74 | 0.249 |
| 75 | 75 | 0.00862 |
| 76 | 76 | 0.159 |
| 77 | 77 | 0.613 |
| 78 | 78 | 0.169 |
| 79 | 79 | 0.623 |
| 8 | 8 | 0.2 |
| 80 | 80 | 0.37 |
| 81 | 81 | 0.409 |
| 82 | 82 | 0.603 |
| 83 | 83 | 0.828 |
| 84 | 84 | 0.841 |
| 85 | 85 | 0.772 |
| 86 | 86 | 0.315 |
| 87 | 87 | 0.0177 |
| 88 | 88 | 0.596 |
| 89 | 89 | 0.983 |
| 9 | 9 | 0.956 |
| 90 | 90 | 0.0555 |
| 91 | 91 | 0.301 |
| 92 | 92 | 0.967 |
| 93 | 93 | 0.331 |
| 94 | 94 | 0.0491 |
| 95 | 95 | 0.0047 |
| 96 | 96 | 0.248 |
| 97 | 97 | 0.939 |
| 98 | 98 | 0.337 |
| 99 | 99 | 0.199 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11766
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010058 human trachea - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0003126 (trachea)
0003127 (open tracheal system trachea)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010058 (human trachea - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
