FF:10614-108G2: Difference between revisions

Latest revision as of 14:31, 3 June 2020

Name:	gastric adenocarcinoma cell line:MKN1
Species:	Human (Homo sapiens)
Library ID:	CNhs11737
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	stomach
dev stage	NA
sex	male
age	72
cell type	unclassifiable
cell line	MKN1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005958

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11737		CAGE		DRX007890		DRR008762

Accession ID Hg19

Library id		BAM		CTSS
CNhs11737		DRZ000187		DRZ001572

Accession ID Hg38

Library id		BAM		CTSS
CNhs11737		DRZ011537		DRZ012922

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.126
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.259
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.699
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0515
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.188
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.278
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0596
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00802
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.38
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.146
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.283
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.235
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0624
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0791
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0791
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0244
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.239
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.204
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0791
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.204
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.146
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11737

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0628
MA0003.1	MA0003.1	0.809
MA0004.1	MA0004.1	0.0569
MA0006.1	MA0006.1	0.82
MA0007.1	MA0007.1	0.889
MA0009.1	MA0009.1	0.462
MA0014.1	MA0014.1	0.153
MA0017.1	MA0017.1	0.551
MA0018.2	MA0018.2	0.0874
MA0019.1	MA0019.1	0.129
MA0024.1	MA0024.1	0.321
MA0025.1	MA0025.1	0.495
MA0027.1	MA0027.1	0.618
MA0028.1	MA0028.1	6.64954e-7
MA0029.1	MA0029.1	0.948
MA0030.1	MA0030.1	0.987
MA0031.1	MA0031.1	0.992
MA0035.2	MA0035.2	0.272
MA0038.1	MA0038.1	0.0794
MA0039.2	MA0039.2	0.00691
MA0040.1	MA0040.1	0.135
MA0041.1	MA0041.1	0.823
MA0042.1	MA0042.1	0.623
MA0043.1	MA0043.1	0.00354
MA0046.1	MA0046.1	0.222
MA0047.2	MA0047.2	0.506
MA0048.1	MA0048.1	0.775
MA0050.1	MA0050.1	0.103
MA0051.1	MA0051.1	0.00454
MA0052.1	MA0052.1	0.132
MA0055.1	MA0055.1	0.0842
MA0057.1	MA0057.1	0.161
MA0058.1	MA0058.1	0.19
MA0059.1	MA0059.1	0.0956
MA0060.1	MA0060.1	0.116
MA0061.1	MA0061.1	7.19524e-4
MA0062.2	MA0062.2	3.71779e-4
MA0065.2	MA0065.2	0.63
MA0066.1	MA0066.1	0.447
MA0067.1	MA0067.1	0.0216
MA0068.1	MA0068.1	0.0083
MA0069.1	MA0069.1	0.931
MA0070.1	MA0070.1	0.864
MA0071.1	MA0071.1	0.592
MA0072.1	MA0072.1	0.593
MA0073.1	MA0073.1	0.936
MA0074.1	MA0074.1	0.766
MA0076.1	MA0076.1	2.88232e-7
MA0077.1	MA0077.1	0.335
MA0078.1	MA0078.1	0.857
MA0079.2	MA0079.2	0.195
MA0080.2	MA0080.2	1.49539e-10
MA0081.1	MA0081.1	0.0155
MA0083.1	MA0083.1	0.00646
MA0084.1	MA0084.1	0.27
MA0087.1	MA0087.1	0.204
MA0088.1	MA0088.1	0.562
MA0090.1	MA0090.1	0.104
MA0091.1	MA0091.1	0.0645
MA0092.1	MA0092.1	0.293
MA0093.1	MA0093.1	0.0569
MA0099.2	MA0099.2	5.25805e-7
MA0100.1	MA0100.1	0.355
MA0101.1	MA0101.1	0.00345
MA0102.2	MA0102.2	0.0115
MA0103.1	MA0103.1	4.99416e-5
MA0104.2	MA0104.2	0.124
MA0105.1	MA0105.1	0.015
MA0106.1	MA0106.1	0.39
MA0107.1	MA0107.1	7.514e-5
MA0108.2	MA0108.2	0.00785
MA0111.1	MA0111.1	0.456
MA0112.2	MA0112.2	0.452
MA0113.1	MA0113.1	0.251
MA0114.1	MA0114.1	0.43
MA0115.1	MA0115.1	0.375
MA0116.1	MA0116.1	0.0288
MA0117.1	MA0117.1	0.0198
MA0119.1	MA0119.1	0.564
MA0122.1	MA0122.1	0.608
MA0124.1	MA0124.1	0.0397
MA0125.1	MA0125.1	0.0906
MA0131.1	MA0131.1	0.531
MA0135.1	MA0135.1	0.321
MA0136.1	MA0136.1	5.45252e-7
MA0137.2	MA0137.2	0.565
MA0138.2	MA0138.2	0.424
MA0139.1	MA0139.1	0.0457
MA0140.1	MA0140.1	0.74
MA0141.1	MA0141.1	0.921
MA0142.1	MA0142.1	0.311
MA0143.1	MA0143.1	0.704
MA0144.1	MA0144.1	0.346
MA0145.1	MA0145.1	0.305
MA0146.1	MA0146.1	0.0318
MA0147.1	MA0147.1	0.00777
MA0148.1	MA0148.1	0.994
MA0149.1	MA0149.1	0.358
MA0150.1	MA0150.1	0.0124
MA0152.1	MA0152.1	0.989
MA0153.1	MA0153.1	0.973
MA0154.1	MA0154.1	0.00655
MA0155.1	MA0155.1	0.898
MA0156.1	MA0156.1	0.00335
MA0157.1	MA0157.1	0.576
MA0159.1	MA0159.1	0.0121
MA0160.1	MA0160.1	0.999
MA0162.1	MA0162.1	0.953
MA0163.1	MA0163.1	0.282
MA0164.1	MA0164.1	0.374
MA0258.1	MA0258.1	0.939
MA0259.1	MA0259.1	0.00523

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11737

Novel motif	Logo	P-value
1	1	0.968
10	10	0.74
100	100	0.186
101	101	0.134
102	102	0.52
103	103	0.555
104	104	0.883
105	105	0.59
106	106	0.586
107	107	0.175
108	108	0.272
109	109	0.0464
11	11	0.274
110	110	0.437
111	111	0.315
112	112	0.351
113	113	9.21012e-5
114	114	0.358
115	115	0.114
116	116	0.627
117	117	0.398
118	118	0.289
119	119	0.509
12	12	0.118
120	120	0.358
121	121	0.937
122	122	0.783
123	123	0.0173
124	124	0.0534
125	125	0.11
126	126	0.302
127	127	0.49
128	128	0.0124
129	129	0.266
13	13	0.227
130	130	0.533
131	131	0.0243
132	132	0.326
133	133	0.255
134	134	0.143
135	135	0.0619
136	136	0.00684
137	137	0.00738
138	138	0.432
139	139	0.828
14	14	0.127
140	140	0.533
141	141	0.639
142	142	0.562
143	143	0.422
144	144	0.922
145	145	0.142
146	146	0.418
147	147	0.992
148	148	0.478
149	149	0.561
15	15	0.52
150	150	0.441
151	151	0.635
152	152	0.0368
153	153	0.0506
154	154	0.31
155	155	0.219
156	156	0.754
157	157	0.854
158	158	0.333
159	159	0.123
16	16	0.72
160	160	0.597
161	161	0.372
162	162	0.577
163	163	0.807
164	164	0.732
165	165	0.837
166	166	0.432
167	167	0.519
168	168	0.961
169	169	0.156
17	17	0.934
18	18	0.984
19	19	0.406
2	2	0.471
20	20	0.486
21	21	0.343
22	22	0.976
23	23	0.18
24	24	0.595
25	25	0.951
26	26	0.331
27	27	0.521
28	28	0.718
29	29	0.0171
3	3	0.406
30	30	0.944
31	31	0.276
32	32	0.201
33	33	0.235
34	34	0.207
35	35	0.133
36	36	0.146
37	37	0.0469
38	38	0.888
39	39	0.675
4	4	0.523
40	40	0.885
41	41	0.015
42	42	0.359
43	43	0.458
44	44	0.0549
45	45	0.87
46	46	0.545
47	47	0.979
48	48	0.877
49	49	0.303
5	5	0.253
50	50	0.977
51	51	0.847
52	52	0.169
53	53	0.0879
54	54	0.604
55	55	0.0873
56	56	0.973
57	57	0.7
58	58	0.493
59	59	0.467
6	6	0.425
60	60	0.523
61	61	0.347
62	62	0.634
63	63	0.772
64	64	0.809
65	65	0.989
66	66	0.34
67	67	0.953
68	68	0.534
69	69	0.235
7	7	0.69
70	70	0.648
71	71	0.506
72	72	0.364
73	73	0.00622
74	74	0.271
75	75	0.0782
76	76	0.0936
77	77	0.743
78	78	0.654
79	79	0.981
8	8	0.541
80	80	0.113
81	81	0.219
82	82	0.722
83	83	0.453
84	84	0.112
85	85	0.442
86	86	0.078
87	87	0.811
88	88	0.947
89	89	0.247
9	9	0.233
90	90	0.124
91	91	0.184
92	92	0.0862
93	93	0.53
94	94	0.138
95	95	0.4
96	96	0.424
97	97	0.742
98	98	0.399
99	99	0.394

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11737

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102384 MKN-1 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100787 (gastric cancer cell line sample)
0102380 (gastric adenocarcinoma cell line sample)
0102384 (MKN-1 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000062,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0010039,UBERON:0003104,UBERON:0000925,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0005409,UBERON:0007026,UBERON:0001041,UBERON:0009142,UBERON:0006595,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00005958
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000220,CL:0000004,CL:0000255,CL:0002076,CL:0002251,CL:0002178,CL:0000223
+|accession_numbers=CAGE;DRX007890;DRR008762;DRZ000187;DRZ001572;DRZ011537;DRZ012922
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100787,FF:0102380,FF:0102384
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!1.90!78.72!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.74!85.72!FOXQ1;;chr1:201979703..201979721,+!p2@ELF3!1.67!45.36!ELF3;;chr3:189349162..189349207,+!p2@TP63!1.65!43.36!TP63;;chr11:129245526..129245553,+!p1@BARX2!1.62!40.76!BARX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.54!40.76!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.50!77.73!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!1.47!32.77!TFAP2A;;chr17:48072574..48072597,-!p1@DLX3!1.40!23.98!DLX3;;chr11:129245736..129245758,+!p2@BARX2!1.39!23.78!BARX2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.35!21.18!SOHLH2;;chr6:10412600..10412637,-!p1@TFAP2A!1.29!30.37!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.19!14.39!IRX2;;chr2:176969228..176969260,+!p1@HOXD11!1.17!13.79!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!1.17!13.79!FOXL2;;chr5:321810..321877,+!p1@AHRR!1.14!40.76!AHRR;;chr19:33793430..33793447,-!p1@CEBPA!1.13!52.75!CEBPA;;chr1:6479968..6479986,-!p1@HES2!1.11!11.79!HES2;;chr6:126240442..126240459,+!p4@NCOA7!1.10!14.99!NCOA7;;chr2:176969179..176969226,+!p2@HOXD11!1.10!11.59!HOXD11;;chr12:54332608..54332636,+!p1@HOXC13!1.09!11.39!HOXC13;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.05!10.19!HOXC5;;chrX:55620497..55620512,+!p@chrX:55620497..55620512,+!1.05!10.19!FOXR2;;chr11:16627528..16627550,-!p7@SOX6!1.04!9.99!SOX6;;chr20:30193083..30193098,+!p1@ID1!1.03!794.44!ID1;;chr6:29648890..29648944,-!p1@ZFP57!1.03!9.79!ZFP57;;chr10:48355030..48355090,+!p1@ZNF488!1.01!11.99!ZNF488;;chr7:57509877..57509895,+!p1@ZNF716!1.01!9.19!ZNF716;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.99!HOXB6;;chr1:41827095..41827155,+!p1@FOXO6!0.99!11.99!FOXO6;;chr20:50179368..50179392,-!p2@NFATC2!0.99!11.39!NFATC2;;chr6:126240463..126240489,+!p6@NCOA7!0.99!9.79!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!0.97!10.39!NCOA7;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.39!SIM2;;chr12:54332652..54332671,+!p2@HOXC13!0.97!8.39!HOXC13;;chr2:172967621..172967637,-!p1@DLX2!0.96!22.58!DLX2;;chr12:54332687..54332701,+!p3@HOXC13!0.95!7.99!HOXC13;;chr6:10412576..10412599,-!p5@TFAP2A!0.95!7.99!TFAP2A;;chr16:86544113..86544145,+!p1@FOXF1!0.94!9.79!FOXF1;;chr6:21593973..21593988,+!p1@SOX4!0.93!280.93!SOX4;;chr7:27196267..27196311,-!p1@HOXA7!0.93!7.59!HOXA7;;chr17:7197911..7197964,-!p1@YBX2!0.93!7.59!YBX2;;chr3:138665969..138665993,-!p2@FOXL2!0.92!7.39!FOXL2;;chr5:172662197..172662216,-!p1@NKX2-5!0.92!7.39!NKX2-5;;chr3:12330560..12330579,+!p1@PPARG!0.91!8.19!PPARG;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.19!HOXB7;;chr6:10415484..10415508,-!p3@TFAP2A!0.87!6.39!TFAP2A;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.86!63.94!ZNF595;;chr5:134369905..134369972,-!p1@PITX1!0.86!9.79!PITX1;;chr17:48046543..48046575,+!p2@DLX4!0.84!5.99!DLX4;;chr12:125003087..125003141,-!p4@NCOR2!0.82!7.39!NCOR2;;chr5:124082322..124082364,-!p1@ZNF608!0.81!14.79!ZNF608;;chr6:10412477..10412490,-!p10@TFAP2A!0.81!5.39!TFAP2A;;chr7:27153454..27153469,-!p2@HOXA3!0.81!5.39!HOXA3;;chr9:124976154..124976177,-!p5@LHX6!0.81!5.39!LHX6;;chr20:42295745..42295765,+!p1@MYBL2!0.79!92.71!MYBL2;;chr20:50721803..50721857,-!p2@ZFP64!0.79!8.39!ZFP64;;chr12:54694758..54694805,-!p1@NFE2!0.79!6.39!NFE2;;chr6:10415263..10415274,-!p8@TFAP2A!0.79!5.20!TFAP2A;;chr9:124976185..124976212,-!p4@LHX6!0.79!5.20!LHX6;;chr3:189348969..189349018,+!p4@TP63!0.79!5.20!TP63;;chr1:10856639..10856662,-!p2@CASZ1!0.79!5.20!CASZ1;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.57!NCOA4;;chr12:53625966..53626012,-!p2@RARG!0.78!14.19!RARG;;chr6:21597370..21597408,+!p5@SOX4!0.78!8.39!SOX4;;chr13:28543285..28543314,-!p2@CDX2!0.78!5.00!CDX2;;chr21:38071403..38071428,+!p2@SIM2!0.78!5.00!SIM2;;chr14:89628064..89628109,-!p4@FOXN3!0.77!10.79!FOXN3;;chr20:50808667..50808729,-!p3@ZFP64!0.77!9.99!ZFP64;;chr10:8095593..8095625,+!p3@GATA3!0.77!5.79!GATA3;;chr12:53614115..53614154,-!p1@RARG!0.76!27.97!RARG;;chr19:33865009..33865090,+!p3@CEBPG!0.76!6.59!CEBPG;;chr19:22605136..22605154,-!p1@ZNF98!0.76!4.80!ZNF98;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.76!4.80!HOXC5;;chr13:28543431..28543487,-!p1@CDX2!0.76!4.80!CDX2;;chr5:121465234..121465263,+!p1@ZNF474!0.76!4.80!ZNF474;;chr7:63505799..63505904,+!p1@ZNF727!0.76!4.80!ZNF727;;chr12:52445218..52445237,+!p1@NR4A1!0.75!64.54!NR4A1;;chr19:33864571..33864596,+!p2@CEBPG!0.74!11.99!CEBPG;;chr18:55102628..55102646,+!p2@ONECUT2!0.73!4.40!ONECUT2;;chr12:53625846..53625861,-!p6@RARG!0.73!4.40!RARG;;chr19:47523058..47523114,+!p1@NPAS1!0.73!4.40!NPAS1;;chr19:35759824..35759891,+!p1@USF2!0.72!149.66!USF2;;chr18:55102598..55102623,+!p1@ONECUT2!0.72!4.20!ONECUT2;;chr19:22605097..22605121,-!p2@ZNF98!0.72!4.20!ZNF98;;chr20:50808639..50808661,-!p6@ZFP64!0.72!4.20!ZFP64;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.72!4.20!EN2;;chr7:5111723..5111807,+!p2@RBAK!0.72!4.20!RBAK;;chr8:10588010..10588030,-!p1@SOX7!0.72!4.20!SOX7;;chr8:11561684..11561751,+!p1@GATA4!0.72!4.20!GATA4;;chr8:41508327..41508355,-!p1@NKX6-3!0.72!4.20!NKX6-3;;chr2:172949484..172949522,+!p1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+|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100787,FF:0101120
 |fonse_cell_line_closure=FF:0100787,FF:0101120
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10614-108G2
 |is_a=EFO:0002091;;FF:0000210;;FF:0102384
 |is_obsolete=
+|library_id=CNhs11737
+|library_id_phase_based=2:CNhs11737
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10614
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10614
 |name=gastric adenocarcinoma cell line:MKN1
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11737,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=108
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=29.35714
 |sample_age=72
+|sample_category=cell lines
 |sample_cell_catalog=RCB1003
 |sample_cell_line=MKN1
@@ Line 80: / Line 100: @@
 |top_motifs=bHLH_family:1.98943527585;FOXM1:1.78738261314;BPTF:1.22102914707;PPARG:1.20865318948;ELK1,4_GABP{A,B1}:1.15919530406;TEF:1.06581687462;UFEwm:1.0409697915;RBPJ:0.990770183954;AIRE:0.955792925584;TBX4,5:0.931028809271;SNAI1..3:0.918776646226;TP53:0.867706145968;HSF1,2:0.847875626735;HOX{A6,A7,B6,B7}:0.778339765277;SP1:0.728701207614;ZEB1:0.717005757693;GCM1,2:0.714733158849;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.586976416793;ZNF143:0.536468727551;ZBTB16:0.530066173381;IRF7:0.528714639802;ZNF148:0.512830195938;MYOD1:0.488856304459;ARID5B:0.481947212111;IRF1,2:0.477412191836;TBP:0.466898630356;RXR{A,B,G}:0.438003021885;POU6F1:0.418102650262;HOXA9_MEIS1:0.400516318735;ONECUT1,2:0.393182585203;IKZF2:0.387526553083;HES1:0.355826521261;TEAD1:0.348798985136;CDC5L:0.340836186694;EGR1..3:0.31563215683;NKX2-1,4:0.30275267797;TFAP2{A,C}:0.283893705718;E2F1..5:0.255785831026;PAX8:0.250993399711;CDX1,2,4:0.239432020173;IKZF1:0.233571809427;FOXQ1:0.232057911659;ZNF423:0.220307511104;TFAP2B:0.188619552388;GFI1:0.17239292156;PAX2:0.167601270485;ZNF384:0.159566731729;SPZ1:0.158953210003;RFX1:0.142892476891;GTF2A1,2:0.124488069792;MTF1:0.118299258996;XCPE1{core}:0.108885550288;LMO2:0.101775209533;HOX{A4,D4}:0.0972319181412;RREB1:0.0895140174214;EVI1:0.0888533741372;NFY{A,B,C}:0.0726401597007;YY1:0.0667134156744;FOX{D1,D2}:0.0640947394499;TLX1..3_NFIC{dimer}:0.0514983594194;SOX5:0.0504765928622;MED-1{core}:0.0362594342617;ATF4:0.0315321532756;ESR1:0.029221442197;ALX1:0.0276084804007;GATA4:0.00503727166615;NR5A1,2:-0.00869442045471;TFDP1:-0.0406832799893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0407474030041;RORA:-0.0431192100346;NRF1:-0.0605454100639;HIF1A:-0.0616932220067;ZIC1..3:-0.0626221736363;MYBL2:-0.0653897856758;ZBTB6:-0.0690198385521;REST:-0.0737451642429;HNF1A:-0.0776757592836;HNF4A_NR2F1,2:-0.0869107751916;RXRA_VDR{dimer}:-0.10516221742;NKX3-1:-0.108502722968;ESRRA:-0.108775508397;GLI1..3:-0.1115663927;MTE{core}:-0.129943017568;RFX2..5_RFXANK_RFXAP:-0.175647905226;AHR_ARNT_ARNT2:-0.187648043132;EP300:-0.189832461578;NR1H4:-0.198144296551;PAX5:-0.198858301269;PITX1..3:-0.201527061448;POU2F1..3:-0.204080169424;TOPORS:-0.204746401967;FOXN1:-0.210354192564;FOXP1:-0.217889301854;FOS_FOS{B,L1}_JUN{B,D}:-0.222025527745;BACH2:-0.225422778834;ZFP161:-0.23367902796;HMX1:-0.237289415103;STAT1,3:-0.241169575967;NR6A1:-0.241911792071;SOX2:-0.250731424322;TFCP2:-0.255926068681;POU1F1:-0.257880408195;SMAD1..7,9:-0.27748966008;HLF:-0.27919739495;ALX4:-0.284970849387;SOX{8,9,10}:-0.288166125991;NFE2L2:-0.301784082768;HIC1:-0.31081270738;NFIL3:-0.328224841802;NKX6-1,2:-0.329083356348;FOSL2:-0.33524955415;NFE2L1:-0.339446677953;NHLH1,2:-0.352380916584;KLF4:-0.353810537718;CEBPA,B_DDIT3:-0.359525375118;PAX3,7:-0.374368351391;PRRX1,2:-0.375433992045;SOX17:-0.377431822072;GTF2I:-0.389530181757;LHX3,4:-0.389700929534;NFKB1_REL_RELA:-0.391928522431;CUX2:-0.409425898112;MEF2{A,B,C,D}:-0.420341669771;NKX2-3_NKX2-5:-0.422163650208;PAX4:-0.431268991412;EBF1:-0.434900485871;OCT4_SOX2{dimer}:-0.441509533424;ATF5_CREB3:-0.44318779552;AR:-0.44627733228;NKX3-2:-0.447517907681;FOX{I1,J2}:-0.449277087668;ELF1,2,4:-0.451636200822;FOX{F1,F2,J1}:-0.454922856243;MYB:-0.456844744184;ADNP_IRX_SIX_ZHX:-0.463718408353;SPI1:-0.464394949425;STAT2,4,6:-0.467494579329;PRDM1:-0.468567758834;FOXD3:-0.475404788331;NFIX:-0.480599600625;HOX{A5,B5}:-0.481621855165;PDX1:-0.487928844622;FOXA2:-0.505611774583;SREBF1,2:-0.505632364864;PATZ1:-0.520087144957;BREu{core}:-0.520444227492;FOXL1:-0.520475745998;NKX2-2,8:-0.536138070561;MAZ:-0.538531081141;MYFfamily:-0.544783161207;SPIB:-0.586151698725;ATF2:-0.593559789293;FOXP3:-0.595681411991;NFE2:-0.597291801755;TFAP4:-0.597508779242;GFI1B:-0.614699883114;HMGA1,2:-0.624156754357;FOXO1,3,4:-0.633248582949;NR3C1:-0.649928367143;EN1,2:-0.657530263555;GATA6:-0.657621778994;RUNX1..3:-0.66380748252;TLX2:-0.697124377251;POU5F1:-0.713172136687;LEF1_TCF7_TCF7L1,2:-0.744551124128;MZF1:-0.772941828891;PAX1,9:-0.783590285545;XBP1:-0.785388251705;JUN:-0.797615893641;STAT5{A,B}:-0.828087121237;CREB1:-0.83941416578;T:-0.848391486712;ETS1,2:-0.848505898431;TAL1_TCF{3,4,12}:-0.872216031173;ATF6:-0.887927360623;CRX:-0.892655294227;SRF:-1.00603547173;MAFB:-1.01622454701;PBX1:-1.02526586264;VSX1,2:-1.03040096452;POU3F1..4:-1.04090452812;GZF1:-1.08558500338;NANOG{mouse}:-1.12528751909;NFATC1..3:-1.14924981448;TGIF1:-1.17169069045;PAX6:-1.19411191806;DBP:-1.29097786669;DMAP1_NCOR{1,2}_SMARC:-1.32819253541;NANOG:-1.36323848812;HAND1,2:-1.52665476114;ZNF238:-1.58267125966;HBP1_HMGB_SSRP1_UBTF:-2.26861890912
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10614-108G2;search_select_hide=table117:FF:10614-108G2
 }}

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FF:10614-108G2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0