FF:10469-106I1: Difference between revisions

Latest revision as of 14:25, 3 June 2020

Name:	rectal cancer cell line:TT1TKB
Species:	Human (Homo sapiens)
Library ID:	CNhs11255
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	rectum
dev stage	NA
sex	male
age	unknown
cell type	unclassifiable
cell line	TT1TKB
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005841

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11255		CAGE		DRX007989		DRR008861

Accession ID Hg19

Library id		BAM		CTSS
CNhs11255		DRZ000286		DRZ001671

Accession ID Hg38

Library id		BAM		CTSS
CNhs11255		DRZ011636		DRZ013021

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.194
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.32
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.472
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.108
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.201
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0507
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.136
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.472
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.327
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.113
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0325
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.229
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0745
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11255

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00423
MA0003.1	MA0003.1	0.815
MA0004.1	MA0004.1	0.031
MA0006.1	MA0006.1	0.405
MA0007.1	MA0007.1	0.478
MA0009.1	MA0009.1	0.499
MA0014.1	MA0014.1	0.0142
MA0017.1	MA0017.1	0.00504
MA0018.2	MA0018.2	0.0269
MA0019.1	MA0019.1	0.514
MA0024.1	MA0024.1	0.0332
MA0025.1	MA0025.1	0.207
MA0027.1	MA0027.1	0.871
MA0028.1	MA0028.1	0.00462
MA0029.1	MA0029.1	0.0506
MA0030.1	MA0030.1	0.0718
MA0031.1	MA0031.1	0.0409
MA0035.2	MA0035.2	0.00129
MA0038.1	MA0038.1	0.0171
MA0039.2	MA0039.2	1.89383e-4
MA0040.1	MA0040.1	0.957
MA0041.1	MA0041.1	0.566
MA0042.1	MA0042.1	0.953
MA0043.1	MA0043.1	0.0137
MA0046.1	MA0046.1	3.15768e-9
MA0047.2	MA0047.2	0.139
MA0048.1	MA0048.1	0.929
MA0050.1	MA0050.1	0.241
MA0051.1	MA0051.1	0.0087
MA0052.1	MA0052.1	0.645
MA0055.1	MA0055.1	0.00954
MA0057.1	MA0057.1	0.892
MA0058.1	MA0058.1	0.0293
MA0059.1	MA0059.1	0.957
MA0060.1	MA0060.1	5.07241e-11
MA0061.1	MA0061.1	0.0135
MA0062.2	MA0062.2	0.0198
MA0065.2	MA0065.2	0.269
MA0066.1	MA0066.1	0.467
MA0067.1	MA0067.1	0.298
MA0068.1	MA0068.1	0.495
MA0069.1	MA0069.1	0.989
MA0070.1	MA0070.1	0.367
MA0071.1	MA0071.1	0.83
MA0072.1	MA0072.1	0.155
MA0073.1	MA0073.1	0.255
MA0074.1	MA0074.1	0.933
MA0076.1	MA0076.1	0.0608
MA0077.1	MA0077.1	0.714
MA0078.1	MA0078.1	0.727
MA0079.2	MA0079.2	0.334
MA0080.2	MA0080.2	3.07673e-5
MA0081.1	MA0081.1	0.00826
MA0083.1	MA0083.1	0.191
MA0084.1	MA0084.1	0.14
MA0087.1	MA0087.1	0.643
MA0088.1	MA0088.1	0.314
MA0090.1	MA0090.1	0.0131
MA0091.1	MA0091.1	0.00647
MA0092.1	MA0092.1	0.0533
MA0093.1	MA0093.1	0.0218
MA0099.2	MA0099.2	0.049
MA0100.1	MA0100.1	0.843
MA0101.1	MA0101.1	0.482
MA0102.2	MA0102.2	0.601
MA0103.1	MA0103.1	4.96469e-6
MA0104.2	MA0104.2	0.205
MA0105.1	MA0105.1	5.8165e-4
MA0106.1	MA0106.1	0.177
MA0107.1	MA0107.1	0.143
MA0108.2	MA0108.2	3.3645e-5
MA0111.1	MA0111.1	0.491
MA0112.2	MA0112.2	0.211
MA0113.1	MA0113.1	0.756
MA0114.1	MA0114.1	4.94926e-6
MA0115.1	MA0115.1	0.0601
MA0116.1	MA0116.1	0.00669
MA0117.1	MA0117.1	0.622
MA0119.1	MA0119.1	0.0111
MA0122.1	MA0122.1	0.418
MA0124.1	MA0124.1	0.589
MA0125.1	MA0125.1	0.00264
MA0131.1	MA0131.1	0.444
MA0135.1	MA0135.1	0.554
MA0136.1	MA0136.1	0.00265
MA0137.2	MA0137.2	0.41
MA0138.2	MA0138.2	0.0624
MA0139.1	MA0139.1	0.494
MA0140.1	MA0140.1	0.00748
MA0141.1	MA0141.1	0.831
MA0142.1	MA0142.1	0.872
MA0143.1	MA0143.1	0.438
MA0144.1	MA0144.1	0.691
MA0145.1	MA0145.1	0.357
MA0146.1	MA0146.1	0.197
MA0147.1	MA0147.1	0.25
MA0148.1	MA0148.1	0.236
MA0149.1	MA0149.1	0.694
MA0150.1	MA0150.1	0.615
MA0152.1	MA0152.1	0.268
MA0153.1	MA0153.1	6.75349e-8
MA0154.1	MA0154.1	0.126
MA0155.1	MA0155.1	0.147
MA0156.1	MA0156.1	0.26
MA0157.1	MA0157.1	0.104
MA0159.1	MA0159.1	0.289
MA0160.1	MA0160.1	0.547
MA0162.1	MA0162.1	0.895
MA0163.1	MA0163.1	0.35
MA0164.1	MA0164.1	0.202
MA0258.1	MA0258.1	0.0488
MA0259.1	MA0259.1	0.244

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11255

Novel motif	Logo	P-value
1	1	0.525
10	10	0.547
100	100	0.492
101	101	0.304
102	102	0.542
103	103	0.218
104	104	0.79
105	105	0.238
106	106	0.643
107	107	0.631
108	108	0.522
109	109	0.352
11	11	0.304
110	110	0.883
111	111	0.0219
112	112	0.0666
113	113	0.552
114	114	0.233
115	115	0.0207
116	116	0.111
117	117	0.208
118	118	0.813
119	119	0.171
12	12	0.63
120	120	0.272
121	121	0.761
122	122	0.259
123	123	0.0229
124	124	0.711
125	125	0.0092
126	126	0.243
127	127	0.784
128	128	0.0485
129	129	0.785
13	13	0.0385
130	130	0.198
131	131	0.0463
132	132	0.593
133	133	0.0539
134	134	0.0492
135	135	0.0229
136	136	0.0648
137	137	0.196
138	138	0.0722
139	139	0.0252
14	14	0.45
140	140	0.957
141	141	0.688
142	142	0.965
143	143	0.219
144	144	0.349
145	145	0.599
146	146	0.352
147	147	0.991
148	148	0.917
149	149	0.79
15	15	0.739
150	150	0.707
151	151	0.334
152	152	0.0357
153	153	0.475
154	154	0.1
155	155	0.981
156	156	0.213
157	157	0.827
158	158	0.174
159	159	0.635
16	16	0.457
160	160	0.681
161	161	0.756
162	162	0.791
163	163	0.698
164	164	0.377
165	165	0.586
166	166	0.823
167	167	0.402
168	168	0.674
169	169	0.763
17	17	0.461
18	18	0.221
19	19	0.143
2	2	0.333
20	20	0.226
21	21	0.728
22	22	0.826
23	23	0.796
24	24	0.891
25	25	0.598
26	26	0.736
27	27	0.297
28	28	0.63
29	29	0.786
3	3	0.153
30	30	0.219
31	31	0.434
32	32	0.003
33	33	0.576
34	34	0.611
35	35	0.112
36	36	0.557
37	37	0.403
38	38	0.95
39	39	0.605
4	4	0.154
40	40	0.519
41	41	0.269
42	42	0.698
43	43	0.488
44	44	0.645
45	45	0.257
46	46	0.257
47	47	0.961
48	48	0.846
49	49	0.464
5	5	0.336
50	50	0.269
51	51	0.654
52	52	0.772
53	53	0.705
54	54	0.857
55	55	0.486
56	56	0.88
57	57	0.575
58	58	0.969
59	59	0.262
6	6	0.294
60	60	0.804
61	61	0.555
62	62	0.272
63	63	0.521
64	64	0.515
65	65	0.362
66	66	6.03755e-4
67	67	0.333
68	68	0.0012
69	69	0.513
7	7	0.505
70	70	0.128
71	71	0.0371
72	72	0.967
73	73	0.239
74	74	0.0867
75	75	0.345
76	76	0.858
77	77	0.209
78	78	0.0609
79	79	0.0927
8	8	0.185
80	80	0.792
81	81	0.0164
82	82	0.00181
83	83	0.0319
84	84	0.582
85	85	0.176
86	86	0.329
87	87	0.552
88	88	0.817
89	89	0.124
9	9	0.214
90	90	0.38
91	91	0.0676
92	92	0.2
93	93	0.317
94	94	0.161
95	95	0.925
96	96	0.724
97	97	0.419
98	98	0.289
99	99	0.766

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11255

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101532 rectal cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001052 (rectum)
0000160 (intestine)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101532 (rectal cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001052,UBERON:0000160,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0000062,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003104,UBERON:0000925,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0007026,UBERON:0004907,UBERON:0009142,UBERON:0001046,UBERON:0006595,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00005841
+|accession_numbers=CAGE;DRX007989;DRR008861;DRZ000286;DRZ001671;DRZ011636;DRZ013021
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001052,UBERON:0000160,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3119
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101532
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:46682321..46682362,-!p1@HOXB6!1.94!86.32!HOXB6;;chr5:149546334..149546364,+!p1@CDX1!1.94!86.32!CDX1;;chr1:201979743..201979762,+!p1@ELF3!1.93!84.92!ELF3;;chr20:55204351..55204377,+!p1@TFAP2C!1.88!95.29!TFAP2C;;chr11:65554528..65554546,+!p1@OVOL1!1.81!63.62!OVOL1;;chr13:28543431..28543487,-!p1@CDX2!1.73!52.97!CDX2;;chr17:45928521..45928539,-!p1@SP6!1.73!52.97!SP6;;chr11:65554563..65554576,+!p2@OVOL1!1.71!49.89!OVOL1;;chr9:20621927..20621996,-!p3@MLLT3!1.70!81.84!MLLT3;;chr1:201979703..201979721,+!p2@ELF3!1.69!47.65!ELF3;;chr13:73633131..73633149,+!p1@KLF5!1.64!435.54!KLF5;;chr5:137804405..137804444,+!p3@EGR1!1.61!47.09!EGR1;;chr13:28543285..28543314,-!p2@CDX2!1.61!39.52!CDX2;;chr1:209979467..209979494,-!p1@IRF6!1.59!42.60!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.52!31.95!GRHL2;;chr20:42984330..42984364,+!p2@HNF4A!1.51!31.67!HNF4A;;chr11:61520075..61520136,+!p1@C11orf9!1.50!63.06!C11orf9;;chr18:19749541..19749557,+!p1@GATA6!1.45!82.68!GATA6;;chr12:52445218..52445237,+!p1@NR4A1!1.44!318.39!NR4A1;;chr4:4861385..4861398,+!p1@MSX1!1.44!75.95!MSX1;;chr5:2751762..2751784,-!p1@IRX2!1.35!21.58!IRX2;;chr11:129245526..129245553,+!p1@BARX2!1.35!21.30!BARX2;;chr13:28543388..28543406,-!p3@CDX2!1.33!20.46!CDX2;;chr9:20621834..20621884,-!p5@MLLT3!1.32!19.90!MLLT3;;chr5:153857778..153857794,-!p1@HAND1!1.31!19.34!HAND1;;chr17:41622925..41622976,-!p3@ETV4!1.28!26.91!ETV4;;chr17:48072574..48072597,-!p1@DLX3!1.28!17.94!DLX3;;chr6:1312325..1312340,+!p1@FOXQ1!1.27!28.59!FOXQ1;;chr17:46667594..46667619,-!p1@HOXB3!1.26!17.10!HOXB3;;chr17:59477233..59477263,+!p1@TBX2!1.25!51.29!TBX2;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.62!GATA2;;chr19:45971246..45971265,+!p1@FOSB!1.23!289.52!FOSB;;chr17:41622765..41622821,-!p2@ETV4!1.23!24.38!ETV4;;chr17:59477275..59477286,+!p3@TBX2!1.23!21.02!TBX2;;chr6:126240380..126240430,+!p2@NCOA7!1.22!39.80!NCOA7;;chr16:85932760..85932775,+!p1@IRF8!1.22!15.41!IRF8;;chr8:99956662..99956684,+!p1@OSR2!1.20!22.98!OSR2;;chr17:46703687..46703740,-!p1@HOXB9!1.20!14.85!HOXB9;;chr6:144329384..144329405,-!p1@PLAGL1!1.19!166.76!PLAGL1;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.42!ZNF385A;;chr5:137801160..137801176,+!p1@EGR1!1.18!1368.01!EGR1;;chr13:41635512..41635539,-!p2@ELF1!1.18!78.20!ELF1;;chr5:137804357..137804390,+!p4@EGR1!1.18!16.54!EGR1;;chr21:38071430..38071456,+!p1@SIM2!1.18!14.29!SIM2;;chr7:27179814..27179840,-!p4@HOXA3!1.18!14.01!HOXA3;;chr19:33865009..33865090,+!p3@CEBPG!1.14!17.10!CEBPG;;chr13:72441315..72441454,-!p1@DACH1!1.13!25.22!DACH1;;chr6:19837592..19837621,+!p1@ID4!1.11!73.15!ID4;;chr10:64576105..64576133,-!p1@EGR2!1.11!24.38!EGR2;;chr18:19749386..19749404,+!p2@GATA6!1.10!16.54!GATA6;;chr3:128207349..128207386,-!p3@GATA2!1.10!11.49!GATA2;;chr15:96869255..96869291,+!p6@NR2F2!1.09!20.46!NR2F2;;chr19:33793430..33793447,-!p1@CEBPA!1.08!46.53!CEBPA;;chr1:164528410..164528428,+!p1@PBX1!1.06!79.88!PBX1;;chr13:28543316..28543329,-!p4@CDX2!1.06!10.37!CDX2;;chr17:41622731..41622764,-!p5@ETV4!1.06!10.37!ETV4;;chr1:212782094..212782109,+!p1@ATF3!1.05!281.39!ATF3;;chr10:63809013..63809041,+!p3@ARID5B!1.05!56.90!ARID5B;;chr6:126240442..126240459,+!p4@NCOA7!1.05!13.17!NCOA7;;chr11:34645791..34645836,+!p3@EHF!1.04!10.09!EHF;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!10.93!ZNF385A;;chr11:65667846..65667868,-!p1@FOSL1!1.02!252.81!FOSL1;;chr7:97840743..97840786,+!p1@BHLHA15!1.02!9.53!BHLHA15;;chr14:75745523..75745537,+!p1@FOS!1.01!1128.10!FOS;;chr11:64764435..64764449,-!p1@BATF2!1.01!12.89!BATF2;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.24!ETV4;;chr9:20622444..20622468,-!p2@MLLT3!1.00!29.71!MLLT3;;chr5:134369905..134369972,-!p1@PITX1!1.00!14.01!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!1.00!8.97!HOXA3;;chr11:2292226..2292270,-!p1@ASCL2!1.00!8.97!ASCL2;;chr1:6479968..6479986,-!p1@HES2!1.00!8.97!HES2;;chr3:69788576..69788648,+!p1@MITF!0.99!47.65!MITF;;chr19:926001..926046,+!p1@ARID3A!0.98!30.27!ARID3A;;chr6:126102292..126102329,+!p3@NCOA7!0.98!29.15!NCOA7;;chr1:24645832..24645853,+!p1@GRHL3!0.97!8.41!GRHL3;;chr10:114710098..114710130,+!p2@TCF7L2!0.96!63.62!TCF7L2;;chr19:45579725..45579743,-!p1@ZNF296!0.96!37.28!ZNF296;;chr12:66218598..66218645,+!p2@HMGA2!0.95!38.12!HMGA2;;chr5:137804484..137804498,+!p2@EGR1!0.95!33.07!EGR1;;chr12:54366975..54367001,+!p1@HOXC11!0.95!7.85!HOXC11;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.95!7.85!MEF2B;;chr19:926055..926068,+!p2@ARID3A!0.94!17.38!ARID3A;;chr2:70314240..70314256,+!p4@PCBP1!0.94!16.26!PCBP1;;chr13:28543253..28543276,-!p5@CDX2!0.93!7.57!CDX2;;chr21:40177845..40177863,+!p1@ETS2!0.92!453.48!ETS2;;chr5:134369879..134369898,-!p2@PITX1!0.92!7.29!PITX1;;chr17:46703212..46703238,-!p2@HOXB9!0.92!7.29!HOXB9;;chr16:69599899..69599919,+!p2@NFAT5!0.91!84.92!NFAT5;;chr12:80084737..80084763,-!p3@PAWR!0.91!27.75!PAWR;;chr15:96869114..96869160,+!p11@NR2F2!0.91!9.81!NR2F2;;chr17:41622834..41622883,-!p6@ETV4!0.91!8.69!ETV4;;chr6:21597600..21597664,+!p3@SOX4!0.90!11.77!SOX4;;chr17:46687959..46688007,-!p2@HOXB7!0.90!9.81!HOXB7;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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0010316
 |fonse_cell_line=FF:0101532
 |fonse_cell_line_closure=FF:0101532
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10469-106I1
 |is_a=EFO:0002091;;FF:0000210;;FF:0101532
 |is_obsolete=
+|library_id=CNhs11255
+|library_id_phase_based=2:CNhs11255
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10469
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10469
 |name=rectal cancer cell line:TT1TKB
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11255,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=106
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=79.1115
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB1185
 |sample_cell_line=TT1TKB
@@ Line 80: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10469-106I1;search_select_hide=table117:FF:10469-106I1
 }}

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Latest revision as of 14:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0