FFCP PHASE1:Hg19::chr2:182322864..182322885,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3676 | |EntrezGene=3676 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6140 | |HGNC=6140 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-82bp_to_ENST00000478440_5end | |association_with_transcript=-82bp_to_ENST00000478440_5end | ||
|cluster_id=chr2:182322864..182322885,+ | |||
|coexpression_cluster_id=C4156 | |coexpression_cluster_id=C4156 | ||
|description=CAGE_peak_3_at_ITGA4_5end | |description=CAGE_peak_3_at_ITGA4_5end | ||
|id=chr2:182322864..182322885,+ | |id=chr2:182322864..182322885,+ | ||
|ontology_enrichment_celltype=CL:0000542;9.11e-19;53!CL:0002087;5.29e-17;104!CL:0000945;7.58e-16;24!CL:0000084;2.53e-15;25!CL:0000791;5.11e-15;18!CL:0000789;5.11e-15;18!CL:0002419;5.11e-15;18!CL:0000860;6.56e-15;33!CL:0002057;6.56e-15;33!CL:0000763;9.58e-15;100!CL:0000576;1.57e-14;48!CL:0000988;3.62e-14;177!CL:0000738;6.07e-13;136!CL:0000625;2.23e-12;11!CL:0000236;2.41e-12;13!CL:0000766;1.00e-11;69!CL:0000473;1.46e-09;39!CL:0000234;1.46e-09;39!CL:0000219;9.07e-07;193 | |ontology_enrichment_celltype=CL:0000037!7.48e-72!172;CL:0000566!7.48e-72!172;CL:0000988!1.28e-69!182;CL:0002032!8.24e-67!165;CL:0000837!8.24e-67!165;CL:0000738!7.48e-53!140;CL:0002031!8.35e-45!124;CL:0002087!4.93e-44!119;CL:0000763!2.96e-36!112;CL:0000049!2.96e-36!112;CL:0000542!3.21e-27!53;CL:0000051!3.21e-27!53;CL:0000838!1.01e-26!52;CL:0000134!1.91e-24!358;CL:0002320!3.85e-23!365;CL:0000766!1.13e-20!76;CL:0000219!2.88e-20!390;CL:0002057!1.48e-19!42;CL:0000839!1.33e-18!70;CL:0000557!1.59e-17!71;CL:0000860!4.22e-17!45;CL:0002194!1.61e-15!63;CL:0000576!1.61e-15!63;CL:0000040!1.61e-15!63;CL:0000559!1.61e-15!63;CL:0002009!3.47e-15!65;CL:0000048!7.71e-15!430;CL:0000034!9.21e-15!444;CL:0000723!4.47e-14!436;CL:0000084!3.43e-13!25;CL:0000827!3.43e-13!25;CL:0000945!6.85e-13!24;CL:0000826!6.85e-13!24;CL:0000791!1.56e-12!18;CL:0000789!1.56e-12!18;CL:0002420!1.56e-12!18;CL:0002419!1.56e-12!18;CL:0000790!1.56e-12!18;CL:0000236!2.92e-10!14;CL:0000625!1.26e-09!11;CL:0002393!4.10e-07!9;CL:0002397!4.10e-07!9 | ||
| | |ontology_enrichment_celltype_v019=CL:0000542;9.11e-19;53!CL:0002087;5.29e-17;104!CL:0000945;7.58e-16;24!CL:0000084;2.53e-15;25!CL:0000791;5.11e-15;18!CL:0000789;5.11e-15;18!CL:0002419;5.11e-15;18!CL:0000860;6.56e-15;33!CL:0002057;6.56e-15;33!CL:0000763;9.58e-15;100!CL:0000576;1.57e-14;48!CL:0000988;3.62e-14;177!CL:0000738;6.07e-13;136!CL:0000625;2.23e-12;11!CL:0000236;2.41e-12;13!CL:0000766;1.00e-11;69!CL:0000473;1.46e-09;39!CL:0000234;1.46e-09;39!CL:0000219;9.07e-07;193 | ||
|ontology_enrichment_disease=DOID:8692;7.65e-19;31!DOID:1240;5.50e-16;39!DOID:2531;9.03e-13;51!DOID:0060083;9.03e-13;51 | |ontology_enrichment_celltype_v019_2=CL:0000037,8.74e-91,168;CL:0000988,8.15e-88,177;CL:0002032,4.14e-84,161;CL:0000837,4.14e-84,161;CL:0000738,1.03e-64,136;CL:0002087,4.83e-55,115;CL:0002031,4.21e-54,120;CL:0000763,4.36e-46,108;CL:0000049,4.36e-46,108;CL:0000542,3.33e-33,53;CL:0000051,3.33e-33,53;CL:0000838,1.55e-32,52;CL:0000134,1.64e-30,354;CL:0002320,5.41e-29,361;CL:0000766,2.73e-25,72;CL:0000219,1.05e-23,386;CL:0000860,1.91e-23,42;CL:0002057,1.91e-23,42;CL:0000839,1.55e-22,66;CL:0000557,1.82e-20,67;CL:0002194,2.48e-19,59;CL:0000576,2.48e-19,59;CL:0000040,2.48e-19,59;CL:0000559,2.48e-19,59;CL:0000034,2.92e-19,441;CL:0000048,3.23e-19,427;CL:0000473,7.14e-19,48;CL:0000234,7.14e-19,48;CL:0000723,2.54e-18,433;CL:0002009,3.09e-18,61;CL:0000945,7.99e-16,24;CL:0000826,7.99e-16,24;CL:0000084,2.24e-15,25;CL:0000827,2.24e-15,25;CL:0000791,4.73e-15,18;CL:0000789,4.73e-15,18;CL:0002420,4.73e-15,18;CL:0002419,4.73e-15,18;CL:0000790,4.73e-15,18;CL:0000236,3.09e-13,14;CL:0000625,2.20e-12,11;CL:0002393,5.09e-09,9;CL:0002397,5.09e-09,9 | ||
|ontology_enrichment_uberon=UBERON:0000178;1.18e-12;15!UBERON:0000179;1.18e-12;15!UBERON:0000463;1.18e-12;15!UBERON:0002390;7.67e-11;32 | |ontology_enrichment_development_v019=CL:0000051;9.11e-19;53!CL:0002057;1.01e-16;42!CL:0000790;5.11e-15;18!CL:0000049;4.86e-13;108 | ||
|ontology_enrichment_disease=DOID:2531!3.26e-17!51;DOID:0060083!3.26e-17!51;DOID:1240!1.02e-15!39;DOID:8692!2.35e-14!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;7.65e-19;31!DOID:1240;5.50e-16;39!DOID:2531;9.03e-13;51!DOID:0060083;9.03e-13;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.64e-21,51;DOID:0060083,1.64e-21,51;DOID:1240,6.57e-21,39;DOID:8692,1.10e-19,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.33e-26!102;UBERON:0003061!3.33e-26!102;UBERON:0002193!1.59e-22!112;UBERON:0002384!3.31e-21!375;UBERON:0002371!5.66e-15!80;UBERON:0001474!7.11e-15!86;UBERON:0002405!6.08e-11!115;UBERON:0004765!2.06e-10!101;UBERON:0001434!2.06e-10!101;UBERON:0000178!8.05e-10!15;UBERON:0000179!8.05e-10!15;UBERON:0000463!8.05e-10!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.18e-12;15!UBERON:0000179;1.18e-12;15!UBERON:0000463;1.18e-12;15!UBERON:0002390;7.67e-11;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.01e-32,98;UBERON:0003061,2.01e-32,98;UBERON:0002193,4.64e-28,108;UBERON:0002384,6.20e-27,371;UBERON:0002405,1.50e-18,93;UBERON:0002371,2.83e-18,76;UBERON:0001474,4.77e-18,82;UBERON:0004765,5.33e-15,90;UBERON:0000178,1.20e-12,15;UBERON:0000179,1.20e-12,15;UBERON:0000463,1.20e-12,15;UBERON:0001434,5.86e-12,100;UBERON:0003081,1.57e-07,203 | |||
|phase1_expression=1.99846217197612,0.856402095563933,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0.313454721478088,0,0,0.251085279189606,6.1130724598361,7.06065069269533,7.39881344348585,4.72037132218685,11.8987113410136,4.02521920621798,0,0,0,0.697204805222715,3.2698923472107,24.0752360254575,2.76997704265939,3.81034450193269,3.25516306073778,0.223915474239924,3.88672399222775,0.257575567634187,2.32637182047304,1.51150377475524,3.63876091781724,2.32429036905685,2.05583944010913,4.95530193432166,4.60307827715441,4.09857130446561,7.09446689665756,3.7922024881028,0.645484683583826,5.41705946377367,1.12945403725563,0.818718450173537,3.14612878223118,3.36692281607993,3.85114832491312,1.91801137739712,4.94776950280074,3.78980949481101,11.5080682643827,1.7412554317715,2.8369261234557,1.86846674698672,4.77372463987812,4.69334626578181,5.42972111762792,2.42159801053347,3.31449872388808,4.43047342417238,32.533314092039,27.8511632954207,21.3851818418543,6.9643751310827,8.56008289196586,7.39337698806569,19.6658793181461,30.832084965859,31.6008986012817,15.839662001519,21.2994058392231,16.9006758234075,16.6424786800938,10.0098996759003,20.6910878383614,15.8650769468367,16.2189138271012,10.8150464130795,12.9192181661607,12.9972897562578,33.0428321447565,24.6623767711876,54.783889633216,3.93419540227666,5.89516144123747,8.42966145897988,18.0561415021932,3.58514493296949,4.73447805734733,0,26.292867824901,7.07054177939609,5.75988125917415,15.4358202346059,12.4248580133905,11.8354006279489,18.2526074110081,19.8972012805811,48.1073122320187,6.3763222159686,8.29376567078111,5.22677619024884,70.1384831297935,20.3106861609018,23.3666662928188,68.8213562293048,25.4852331459277,33.2052561466773,21.8603970223126,19.7253405991882,28.0290678428176,44.9750615588445,29.3603792534581,22.9915839137893,20.5638878089227,12.0348088102578,10.5721814834443,0,0,0,0,0,0,0,0,0.283604451492204,0,0.43917392846563,0.196468613246569,0,0,2.59637914923747,2.96020553408754,0.132957960518865,2.8618874916641,5.71994910780128,2.22874500797739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0,0,1.06748995729705,0,0,0.269421344139376,0.653847612453835,0.151357427644931,1.15235184896,0.234321431833797,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81491493056034,0.717558542755448,0.213557388818567,0.847727604638247,1.20036438433761,3.40073346486848,0.515281080091258,0.744467425326359,0,0,1.00973509697646,0.460249493211497,0,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,0,33.9926586549281,0,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0.587043471179108,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,6.40462209264727,0.880484340132261,2.28060927094849,3.31475892859011,1.76739406796932,0,0,0,0,0,0,0,0,1.74384027533312,0.07333828582095,2.06834745212444,0,0,2.92531928243358,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,16.7476146171638,7.54696512008311,8.2139543219039,0,0,0,0,0,3.74503511973591,14.9580729602012,2.90090859405225,0,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0,0.343143423810856,12.4060815673732,7.11856862701436,9.71220776011343,0,0,0,2.48107807818777,2.30192959932094,1.40330047216537,0,2.04682899626681,0.64341568457443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0.831076008928724,0,68.4090815135316,61.4373309908516,0,0.328014645699706,0.325378394664303,0.103041011647722,22.1598104860391,33.0037999682352,0,0,0,0,0,0.15350367472613,0.551346289938122,0.214840489736547,0.725083469571143,1.10794615640931,1.95870478422822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,1.31178950409327,0,1.239293992399,0,0.430234056612155,0,0,0.354761064070598,0.211107635297664,0.329294892959902,0,0,0,0,0,0.376575203107117,0,0,0,0,19.2830091508224,18.351292971417,5.69647187174163,15.4850654047563,11.9295059194996,14.2664128462398,22.6813203640008,10.3106272918255,0,0,0,5.57409525377156,4.47234560226979,35.1440706141166,5.7393458182376,11.1764448002377,9.38376313648597,9.31363763985085,12.9848776109822,16.0054391524672,7.53174440809534,10.3408731210195,25.0634477090067,16.0827188911523,24.7305635659697,41.7725393885468,28.1058516875615,54.6173498161666,4.30137070031841,2.68411329470899,3.50383197595008,8.20630000688569,11.4146531297049,11.0778659052941,41.1092631283494,19.6512461118714,145.216615240485,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0.824019371133798,2.11125408127993,0.398495976502139,7.73594963487214,0,0,10.8314628805741,0,0,0,3.5810065915881,0.0986434056369336,16.7638164642858,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0.230850775511391,0,0,0,0,0.638002319463839,0.183195186803725,0,40.8773192782946,8.00599307614626,90.2529432717849,0,0,0,0,89.9581037028943,0,0,0,0,1.99052386215701,0.7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| ||
|short_description=p3@ITGA4 | |short_description=p3@ITGA4 | ||
}} | }} |
Latest revision as of 21:09, 18 September 2015
Short description: | p3@ITGA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ITGA4_5end |
Coexpression cluster: | C4156_acute_chronic_Reticulocytes_thymus_CD4_CD34_CD8 |
Association with transcript: | -82bp_to_ENST00000478440_5end |
EntrezGene: | ITGA4 |
HGNC: | 6140 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.01e-32 | 98 |
blood island | 2.01e-32 | 98 |
hemolymphoid system | 4.64e-28 | 108 |
connective tissue | 6.20e-27 | 371 |
immune system | 1.50e-18 | 93 |
bone marrow | 2.83e-18 | 76 |
bone element | 4.77e-18 | 82 |
skeletal element | 5.33e-15 | 90 |
blood | 1.20e-12 | 15 |
haemolymphatic fluid | 1.20e-12 | 15 |
organism substance | 1.20e-12 | 15 |
skeletal system | 5.86e-12 | 100 |
lateral plate mesoderm | 1.57e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.64e-21 | 51 |
immune system cancer | 1.64e-21 | 51 |
leukemia | 6.57e-21 | 39 |
myeloid leukemia | 1.10e-19 | 31 |