FF:11757-123H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005655 | |||
|accession_numbers=CAGE;DRX008563;DRR009435;DRZ000860;DRZ002245;DRZ012210;DRZ013595 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!1.33!42.72!C11orf9;;chr3:25470156..25470227,+!p2@RARB!1.23!15.87!RARB;;chr8:55370487..55370503,+!p1@SOX17!1.21!15.05!SOX17;;chr21:36260773..36260804,-!p7@RUNX1!1.18!19.12!RUNX1;;chr12:26277817..26277863,-!p2@BHLHE41!1.09!15.46!BHLHE41;;chr2:114036488..114036504,-!p1@PAX8!1.08!10.99!PAX8;;chr8:11561684..11561751,+!p1@GATA4!1.08!10.99!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.07!55.74!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.07!14.65!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.06!28.89!OSR1;;chr3:25469815..25469866,+!p3@RARB!1.06!10.58!RARB;;chr7:27183263..27183284,-!p2@HOXA5!1.03!9.76!HOXA5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.03!9.76!ZBED1;;chr11:65686802..65686818,+!p6@DRAP1!1.02!16.68!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!1.02!11.39!POU2F3;;chr18:19749541..19749557,+!p1@GATA6!0.99!28.48!GATA6;;chr7:27183114..27183138,-!p3@HOXA5!0.98!8.54!HOXA5;;chr1:170633262..170633285,+!p3@PRRX1!0.96!9.36!PRRX1;;chr7:27183291..27183324,-!p1@HOXA5!0.96!8.14!HOXA5;;chr11:65686732..65686756,+!p2@DRAP1!0.94!33.77!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.54!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!0.92!143.63!FOSB;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.32!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.92!7.32!HOXC5;;chr1:151032860..151032918,+!p1@MLLT11!0.91!89.10!MLLT11;;chr3:5021268..5021282,+!p4@BHLHE40!0.91!15.05!BHLHE40;;chr11:65687362..65687436,+!p3@DRAP1!0.88!31.74!DRAP1;;chr21:36260295..36260310,-!p3@RUNX1!0.88!10.99!RUNX1;;chr14:62162258..62162269,+!p2@HIF1A!0.86!63.47!HIF1A;;chr3:141087393..141087426,+!p3@ZBTB38!0.86!26.45!ZBTB38;;chr12:54447637..54447659,+!p4@HOXC4!0.85!6.10!HOXC4;;chr12:54447599..54447630,+!p3@HOXC4!0.84!7.32!HOXC4;;chr15:83953397..83953425,-!p1@BNC1!0.84!6.92!BNC1;;chr8:37963466..37963506,+!p3@ASH2L!0.83!7.32!ASH2L;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.70!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.82!9.76!CREB3L1;;chr7:44143997..44144008,+!p3@AEBP1!0.82!7.32!AEBP1;;chr14:62162285..62162296,+!p3@HIF1A!0.81!30.52!HIF1A;;chr8:37963407..37963454,+!p2@ASH2L!0.80!17.09!ASH2L;;chr7:44143978..44143989,+!p2@AEBP1!0.80!10.17!AEBP1;;chr7:27183191..27183214,-!p4@HOXA5!0.80!5.29!HOXA5;;chr11:32457075..32457095,-!p1@WT1!0.80!5.29!WT1;;chr10:63809106..63809127,+!p1@ARID5B!0.79!76.08!ARID5B;;chr1:151032922..151032951,+!p2@MLLT11!0.79!8.95!MLLT11;;chr18:19749386..19749404,+!p2@GATA6!0.79!7.73!GATA6;;chr3:25469724..25469773,+!p1@RARB!0.79!7.73!RARB;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.27!IFI16;;chr15:57511609..57511651,+!p2@TCF12!0.77!8.54!TCF12;;chr3:141121847..141121868,+!p5@ZBTB38!0.77!7.73!ZBTB38;;chr16:31076332..31076388,-!p3@ZNF668!0.77!4.88!ZNF668;;chr3:193853927..193853944,+!p1@HES1!0.76!173.33!HES1;;chr15:96874927..96874938,+!p8@NR2F2!0.75!10.58!NR2F2;;chr12:80085255..80085284,-!p9@PAWR!0.75!6.92!PAWR;;chr20:50179368..50179392,-!p2@NFATC2!0.75!6.10!NFATC2;;chr2:166326200..166326216,+!p1@CSRNP3!0.74!6.92!CSRNP3;;chr3:141087454..141087465,+!p19@ZBTB38!0.74!4.48!ZBTB38;;chr12:54422217..54422239,+!p3@HOXC6!0.74!4.48!HOXC6;;chr15:96869255..96869291,+!p6@NR2F2!0.72!8.14!NR2F2;;chr8:72756667..72756736,-!p2@MSC!0.72!6.92!MSC;;chr9:35732514..35732530,+!p5@CREB3!0.71!6.10!CREB3;;chr17:46622205..46622218,-!p3@HOXB2!0.71!4.88!HOXB2;;chr12:66218598..66218645,+!p2@HMGA2!0.70!20.75!HMGA2;;chr21:36260343..36260402,-!p6@RUNX1!0.70!6.92!RUNX1;;chr17:46622114..46622138,-!p4@HOXB2!0.70!6.51!HOXB2;;chr3:25470062..25470084,+!p4@RARB!0.70!4.07!RARB;;chr4:174451370..174451387,-!p1@HAND2!0.70!4.07!HAND2;;chr9:16728327..16728338,-!p5@BNC2!0.70!4.07!BNC2;;chr19:54058073..54058088,+!p1@ZNF331!0.70!4.07!ZNF331;;chr6:134210243..134210257,+!p1@TCF21!0.70!4.07!TCF21;;chr7:27170359..27170381,-!p1@HOXA4!0.70!4.07!HOXA4;;chr11:65687158..65687216,+!p4@DRAP1!0.68!24.41!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.68!24.01!CREB3;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!15.05!BHLHE41;;chr11:65687222..65687240,+!p7@DRAP1!0.67!4.88!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!0.67!3.66!RFX8;;chr3:141121820..141121838,+!p9@ZBTB38!0.67!3.66!ZBTB38;;chr9:96717629..96717644,-!p1@BARX1!0.67!3.66!BARX1;;chr7:44143925..44143970,+!p1@AEBP1!0.65!90.73!AEBP1;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.65!15.05!HNRPK;;chr21:36421535..36421610,-!p2@RUNX1!0.65!14.24!RUNX1;;chr9:2158443..2158481,+!p2@SMARCA2!0.65!10.99!SMARCA2;;chr9:14313893..14313908,-!p7@NFIB!0.65!5.29!NFIB;;chr17:46675420..46675465,-!p3@HOXB6!0.65!4.07!HOXB6;;chr1:158979792..158979814,+!p2@IFI16!0.64!37.43!IFI16;;chr15:96869114..96869160,+!p11@NR2F2!0.64!4.88!NR2F2;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.76!ZFPM2;;chr1:158979851..158979865,+!p5@IFI16!0.63!8.14!IFI16;;chr1:170632250..170632277,+!p7@PRRX1!0.63!3.25!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!0.63!3.25!HOXB6;;chr11:46333934..46333963,+!p5@CREB3L1!0.63!3.25!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!0.63!3.25!HOXA3;;chr7:27183325..27183338,-!p5@HOXA5!0.63!3.25!HOXA5;;chr2:102091478..102091490,-!p3@RFX8!0.63!3.25!RFX8;;chr10:63809134..63809145,+!p6@ARID5B!0.62!8.14!ARID5B;;chr3:107244229..107244254,+!p3@BBX!0.62!5.70!BBX;;chr6:34204921..34204939,+!p3@HMGA1!0.61!113.11!HMGA1;;chr5:72744594..72744609,-!p1@FOXD1!0.61!16.68!FOXD1;;chr11:65687243..65687276,+!p8@DRAP1!0.61!4.48!DRAP1;;chr14:62162224..62162254,+!p1@HIF1A!0.60!522.02!HIF1A;;chr7:150945754..150945789,-!p2@SMARCD3!0.60!10.58!SMARCD3;;chr1:151032833..151032850,+!p3@MLLT11!0.60!7.73!MLLT11;;chr1:158985493..158985535,+!p4@IFI16!0.60!4.88!IFI16;;chr14:75746722..75746777,+!p2@FOS!0.60!4.07!FOS;;chr12:124873357..124873401,-!p1@NCOR2!0.59!40.69!NCOR2;;chr12:115121962..115121987,-!p1@TBX3!0.59!29.70!TBX3;;chr2:239756671..239756732,+!p1@TWIST2!0.59!10.99!TWIST2;;chr1:151032782..151032801,+!p4@MLLT11!0.59!6.51!MLLT11;;chr12:66218212..66218244,+!p5@HMGA2!0.59!4.48!HMGA2;;chr12:54394309..54394336,+!p2@HOXC9!0.59!2.85!HOXC9;;chr12:54447686..54447704,+!p5@HOXC4!0.59!2.85!HOXC4;;chr7:27153428..27153440,-!p3@HOXA3!0.59!2.85!HOXA3;;chr7:28449015..28449024,+!p6@CREB5!0.59!2.85!CREB5;;chr7:26191809..26191890,+!p1@NFE2L3!0.58!16.68!NFE2L3;;chr17:1959369..1959388,+!p2@HIC1!0.58!8.54!HIC1;;chr1:221052776..221052799,+!p1@HLX!0.58!5.70!HLX;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.88!ZFP64;;chr2:169312600..169312606,+!p2@CERS6!0.58!4.88!CERS6;;chr1:151032739..151032748,+!p6@MLLT11!0.58!3.66!MLLT11;;chr11:46299186..46299195,+!p3@CREB3L1!0.58!3.25!CREB3L1;;chr8:72756637..72756664,-!p3@MSC!0.58!3.25!MSC;;chr17:1958388..1958404,+!p1@HIC1!0.57!21.16!HIC1;;chr1:8934931..8934947,-!p4@ENO1!0.57!10.58!ENO1;;chr17:46655704..46655718,-!p2@HOXB4!0.57!4.48!HOXB4;;chr1:8938709..8938720,-!p3@ENO1!0.56!160.71!ENO1;;chr15:96873984..96873999,+!p3@NR2F2!0.56!23.60!NR2F2;;chr11:65686952..65686975,+!p5@DRAP1!0.56!17.90!DRAP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.56!13.83!ZBTB20;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.39!BRCA1;;chr10:35484053..35484076,+!p1@CREM!0.56!7.73!CREM;;chr8:49833978..49833996,-!p1@SNAI2!0.55!66.32!SNAI2;;chr8:49833948..49833973,-!p2@SNAI2!0.55!19.94!SNAI2;;chr6:19837592..19837621,+!p1@ID4!0.55!19.53!ID4;;chr2:66662281..66662308,+!p1@MEIS1!0.55!10.58!MEIS1;;chr14:24837368..24837401,+!p1@NFATC4!0.55!6.92!NFATC4;;chr17:46688334..46688385,-!p1@HOXB7!0.55!4.07!HOXB7;;chr19:13134772..13134822,+!p2@NFIX!0.55!4.07!NFIX;;chr9:16870659..16870675,-!p2@BNC2!0.55!3.25!BNC2;;chr19:42636586..42636607,-!p1@POU2F2!0.54!8.14!POU2F2;;chr8:72756063..72756125,-!p1@MSC!0.54!5.70!MSC;;chr15:96869511..96869525,+!p16@NR2F2!0.54!2.85!NR2F2;;chr18:53068911..53068935,-!p4@TCF4!0.54!2.85!TCF4;;chr15:67430351..67430366,+!p10@SMAD3!0.54!2.44!SMAD3;;chr17:46132044..46132080,+!p4@NFE2L1!0.54!2.44!NFE2L1;;chr6:28321909..28321965,-!p3@ZNF323!0.54!2.44!ZNF323;;chr6:28321971..28321995,-!p1@ZNF323!0.54!2.44!ZNF323;;chr7:1577899..1577943,+!p3@MAFK!0.54!2.44!MAFK;;chr7:27183141..27183152,-!p6@HOXA5!0.54!2.44!HOXA5;;chr9:127269661..127269719,-!p1@NR5A1!0.54!2.44!NR5A1;;chr12:54393880..54393962,+!p1@HOXC9!0.54!2.44!HOXC9;;chr12:80085120..80085156,-!p14@PAWR!0.54!2.44!PAWR;;chr1:42384343..42384380,-!p4@HIVEP3!0.54!2.44!HIVEP3;;chr1:42384532..42384603,-!p2@HIVEP3!0.54!2.44!HIVEP3;;chr21:36260325..36260341,-!p14@RUNX1!0.54!2.44!RUNX1;;chr2:102091590..102091601,-!p5@RFX8!0.54!2.44!RFX8;;chr3:141087562..141087594,+!p12@ZBTB38!0.54!2.44!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!0.53!7.73!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!0.53!3.25!ZFPM2;;chrX:128657457..128657475,-!p1@SMARCA1!0.52!34.18!SMARCA1;;chr17:46622070..46622109,-!p1@HOXB2!0.52!6.10!HOXB2;;chr2:239756739..239756755,+!p2@TWIST2!0.52!4.48!TWIST2;;chr15:96881221..96881240,+!p19@NR2F2!0.52!3.25!NR2F2;;chr1:158985469..158985489,+!p7@IFI16!0.52!2.85!IFI16;;chr18:53255415..53255491,-!p1@TCF4!0.51!24.82!TCF4;;chr19:20011744..20011770,+!p1@ZNF93!0.51!10.99!ZNF93;;chr15:71184724..71184778,-!p1@THAP10!0.51!10.58!THAP10;;chr7:42276787..42276815,-!p1@GLI3!0.51!7.32!GLI3;;chr15:96874244..96874259,+!p5@NR2F2!0.51!6.51!NR2F2;;chr7:137686763..137686784,-!p5@CREB3L2!0.51!4.48!CREB3L2;;chr12:80085061..80085119,-!p6@PAWR!0.51!4.07!PAWR;;chr8:72756267..72756296,-!p4@MSC!0.51!3.66!MSC;;chr12:115122005..115122016,-!p3@TBX3!0.51!2.85!TBX3;;chr10:51565156..51565167,+!p5@NCOA4!0.50!8.54!NCOA4;;chr18:3447617..3447633,+!p20@TGIF1!0.50!2.44!TGIF1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.49!12.21!TAL1;;chr4:56412767..56412799,-!p3@CLOCK!0.49!5.70!CLOCK;;chr20:39946400..39946423,-!p3@ZHX3!0.49!4.48!ZHX3;;chr15:67418047..67418093,+!p4@SMAD3!0.49!2.85!SMAD3;;chr14:75745523..75745537,+!p1@FOS!0.48!333.63!FOS;;chr5:92918919..92918942,+!p1@NR2F1!0.48!11.80!NR2F1;;chr14:62203595..62203676,+!p4@HIF1A!0.48!4.48!HIF1A;;chr12:115122318..115122331,-!p2@TBX3!0.48!2.03!TBX3;;chr12:26277994..26278001,-!p6@BHLHE41!0.48!2.03!BHLHE41;;chr12:54402745..54402788,+!p1@HOXC8!0.48!2.03!HOXC8;;chr12:66218904..66218913,+!p11@HMGA2!0.48!2.03!HMGA2;;chr12:8186270..8186292,+!p3@FOXJ2!0.48!2.03!FOXJ2;;chr14:62214151..62214164,+!p11@HIF1A!0.48!2.03!HIF1A;;c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| |expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!1.33!42.72!C11orf9;;chr3:25470156..25470227,+!p2@RARB!1.23!15.87!RARB;;chr8:55370487..55370503,+!p1@SOX17!1.21!15.05!SOX17;;chr21:36260773..36260804,-!p7@RUNX1!1.18!19.12!RUNX1;;chr12:26277817..26277863,-!p2@BHLHE41!1.09!15.46!BHLHE41;;chr2:114036488..114036504,-!p1@PAX8!1.08!10.99!PAX8;;chr8:11561684..11561751,+!p1@GATA4!1.08!10.99!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.07!55.74!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.07!14.65!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.06!28.89!OSR1;;chr3:25469815..25469866,+!p3@RARB!1.06!10.58!RARB;;chr7:27183263..27183284,-!p2@HOXA5!1.03!9.76!HOXA5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.03!9.76!ZBED1;;chr11:65686802..65686818,+!p6@DRAP1!1.02!16.68!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!1.02!11.39!POU2F3;;chr18:19749541..19749557,+!p1@GATA6!0.99!28.48!GATA6;;chr7:27183114..27183138,-!p3@HOXA5!0.98!8.54!HOXA5;;chr1:170633262..170633285,+!p3@PRRX1!0.96!9.36!PRRX1;;chr7:27183291..27183324,-!p1@HOXA5!0.96!8.14!HOXA5;;chr11:65686732..65686756,+!p2@DRAP1!0.94!33.77!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.54!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!0.92!143.63!FOSB;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.32!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.92!7.32!HOXC5;;chr1:151032860..151032918,+!p1@MLLT11!0.91!89.10!MLLT11;;chr3:5021268..5021282,+!p4@BHLHE40!0.91!15.05!BHLHE40;;chr11:65687362..65687436,+!p3@DRAP1!0.88!31.74!DRAP1;;chr21:36260295..36260310,-!p3@RUNX1!0.88!10.99!RUNX1;;chr14:62162258..62162269,+!p2@HIF1A!0.86!63.47!HIF1A;;chr3:141087393..141087426,+!p3@ZBTB38!0.86!26.45!ZBTB38;;chr12:54447637..54447659,+!p4@HOXC4!0.85!6.10!HOXC4;;chr12:54447599..54447630,+!p3@HOXC4!0.84!7.32!HOXC4;;chr15:83953397..83953425,-!p1@BNC1!0.84!6.92!BNC1;;chr8:37963466..37963506,+!p3@ASH2L!0.83!7.32!ASH2L;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.70!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.82!9.76!CREB3L1;;chr7:44143997..44144008,+!p3@AEBP1!0.82!7.32!AEBP1;;chr14:62162285..62162296,+!p3@HIF1A!0.81!30.52!HIF1A;;chr8:37963407..37963454,+!p2@ASH2L!0.80!17.09!ASH2L;;chr7:44143978..44143989,+!p2@AEBP1!0.80!10.17!AEBP1;;chr7:27183191..27183214,-!p4@HOXA5!0.80!5.29!HOXA5;;chr11:32457075..32457095,-!p1@WT1!0.80!5.29!WT1;;chr10:63809106..63809127,+!p1@ARID5B!0.79!76.08!ARID5B;;chr1:151032922..151032951,+!p2@MLLT11!0.79!8.95!MLLT11;;chr18:19749386..19749404,+!p2@GATA6!0.79!7.73!GATA6;;chr3:25469724..25469773,+!p1@RARB!0.79!7.73!RARB;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.27!IFI16;;chr15:57511609..57511651,+!p2@TCF12!0.77!8.54!TCF12;;chr3:141121847..141121868,+!p5@ZBTB38!0.77!7.73!ZBTB38;;chr16:31076332..31076388,-!p3@ZNF668!0.77!4.88!ZNF668;;chr3:193853927..193853944,+!p1@HES1!0.76!173.33!HES1;;chr15:96874927..96874938,+!p8@NR2F2!0.75!10.58!NR2F2;;chr12:80085255..80085284,-!p9@PAWR!0.75!6.92!PAWR;;chr20:50179368..50179392,-!p2@NFATC2!0.75!6.10!NFATC2;;chr2:166326200..166326216,+!p1@CSRNP3!0.74!6.92!CSRNP3;;chr3:141087454..141087465,+!p19@ZBTB38!0.74!4.48!ZBTB38;;chr12:54422217..54422239,+!p3@HOXC6!0.74!4.48!HOXC6;;chr15:96869255..96869291,+!p6@NR2F2!0.72!8.14!NR2F2;;chr8:72756667..72756736,-!p2@MSC!0.72!6.92!MSC;;chr9:35732514..35732530,+!p5@CREB3!0.71!6.10!CREB3;;chr17:46622205..46622218,-!p3@HOXB2!0.71!4.88!HOXB2;;chr12:66218598..66218645,+!p2@HMGA2!0.70!20.75!HMGA2;;chr21:36260343..36260402,-!p6@RUNX1!0.70!6.92!RUNX1;;chr17:46622114..46622138,-!p4@HOXB2!0.70!6.51!HOXB2;;chr3:25470062..25470084,+!p4@RARB!0.70!4.07!RARB;;chr4:174451370..174451387,-!p1@HAND2!0.70!4.07!HAND2;;chr9:16728327..16728338,-!p5@BNC2!0.70!4.07!BNC2;;chr19:54058073..54058088,+!p1@ZNF331!0.70!4.07!ZNF331;;chr6:134210243..134210257,+!p1@TCF21!0.70!4.07!TCF21;;chr7:27170359..27170381,-!p1@HOXA4!0.70!4.07!HOXA4;;chr11:65687158..65687216,+!p4@DRAP1!0.68!24.41!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.68!24.01!CREB3;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!15.05!BHLHE41;;chr11:65687222..65687240,+!p7@DRAP1!0.67!4.88!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!0.67!3.66!RFX8;;chr3:141121820..141121838,+!p9@ZBTB38!0.67!3.66!ZBTB38;;chr9:96717629..96717644,-!p1@BARX1!0.67!3.66!BARX1;;chr7:44143925..44143970,+!p1@AEBP1!0.65!90.73!AEBP1;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.65!15.05!HNRPK;;chr21:36421535..36421610,-!p2@RUNX1!0.65!14.24!RUNX1;;chr9:2158443..2158481,+!p2@SMARCA2!0.65!10.99!SMARCA2;;chr9:14313893..14313908,-!p7@NFIB!0.65!5.29!NFIB;;chr17:46675420..46675465,-!p3@HOXB6!0.65!4.07!HOXB6;;chr1:158979792..158979814,+!p2@IFI16!0.64!37.43!IFI16;;chr15:96869114..96869160,+!p11@NR2F2!0.64!4.88!NR2F2;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.76!ZFPM2;;chr1:158979851..158979865,+!p5@IFI16!0.63!8.14!IFI16;;chr1:170632250..170632277,+!p7@PRRX1!0.63!3.25!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!0.63!3.25!HOXB6;;chr11:46333934..46333963,+!p5@CREB3L1!0.63!3.25!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!0.63!3.25!HOXA3;;chr7:27183325..27183338,-!p5@HOXA5!0.63!3.25!HOXA5;;chr2:102091478..102091490,-!p3@RFX8!0.63!3.25!RFX8;;chr10:63809134..63809145,+!p6@ARID5B!0.62!8.14!ARID5B;;chr3:107244229..107244254,+!p3@BBX!0.62!5.70!BBX;;chr6:34204921..34204939,+!p3@HMGA1!0.61!113.11!HMGA1;;chr5:72744594..72744609,-!p1@FOXD1!0.61!16.68!FOXD1;;chr11:65687243..65687276,+!p8@DRAP1!0.61!4.48!DRAP1;;chr14:62162224..62162254,+!p1@HIF1A!0.60!522.02!HIF1A;;chr7:150945754..150945789,-!p2@SMARCD3!0.60!10.58!SMARCD3;;chr1:151032833..151032850,+!p3@MLLT11!0.60!7.73!MLLT11;;chr1:158985493..158985535,+!p4@IFI16!0.60!4.88!IFI16;;chr14:75746722..75746777,+!p2@FOS!0.60!4.07!FOS;;chr12:124873357..124873401,-!p1@NCOR2!0.59!40.69!NCOR2;;chr12:115121962..115121987,-!p1@TBX3!0.59!29.70!TBX3;;chr2:239756671..239756732,+!p1@TWIST2!0.59!10.99!TWIST2;;chr1:151032782..151032801,+!p4@MLLT11!0.59!6.51!MLLT11;;chr12:66218212..66218244,+!p5@HMGA2!0.59!4.48!HMGA2;;chr12:54394309..54394336,+!p2@HOXC9!0.59!2.85!HOXC9;;chr12:54447686..54447704,+!p5@HOXC4!0.59!2.85!HOXC4;;chr7:27153428..27153440,-!p3@HOXA3!0.59!2.85!HOXA3;;chr7:28449015..28449024,+!p6@CREB5!0.59!2.85!CREB5;;chr7:26191809..26191890,+!p1@NFE2L3!0.58!16.68!NFE2L3;;chr17:1959369..1959388,+!p2@HIC1!0.58!8.54!HIC1;;chr1:221052776..221052799,+!p1@HLX!0.58!5.70!HLX;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.88!ZFP64;;chr2:169312600..169312606,+!p2@CERS6!0.58!4.88!CERS6;;chr1:151032739..151032748,+!p6@MLLT11!0.58!3.66!MLLT11;;chr11:46299186..46299195,+!p3@CREB3L1!0.58!3.25!CREB3L1;;chr8:72756637..72756664,-!p3@MSC!0.58!3.25!MSC;;chr17:1958388..1958404,+!p1@HIC1!0.57!21.16!HIC1;;chr1:8934931..8934947,-!p4@ENO1!0.57!10.58!ENO1;;chr17:46655704..46655718,-!p2@HOXB4!0.57!4.48!HOXB4;;chr1:8938709..8938720,-!p3@ENO1!0.56!160.71!ENO1;;chr15:96873984..96873999,+!p3@NR2F2!0.56!23.60!NR2F2;;chr11:65686952..65686975,+!p5@DRAP1!0.56!17.90!DRAP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.56!13.83!ZBTB20;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.39!BRCA1;;chr10:35484053..35484076,+!p1@CREM!0.56!7.73!CREM;;chr8:49833978..49833996,-!p1@SNAI2!0.55!66.32!SNAI2;;chr8:49833948..49833973,-!p2@SNAI2!0.55!19.94!SNAI2;;chr6:19837592..19837621,+!p1@ID4!0.55!19.53!ID4;;chr2:66662281..66662308,+!p1@MEIS1!0.55!10.58!MEIS1;;chr14:24837368..24837401,+!p1@NFATC4!0.55!6.92!NFATC4;;chr17:46688334..46688385,-!p1@HOXB7!0.55!4.07!HOXB7;;chr19:13134772..13134822,+!p2@NFIX!0.55!4.07!NFIX;;chr9:16870659..16870675,-!p2@BNC2!0.55!3.25!BNC2;;chr19:42636586..42636607,-!p1@POU2F2!0.54!8.14!POU2F2;;chr8:72756063..72756125,-!p1@MSC!0.54!5.70!MSC;;chr15:96869511..96869525,+!p16@NR2F2!0.54!2.85!NR2F2;;chr18:53068911..53068935,-!p4@TCF4!0.54!2.85!TCF4;;chr15:67430351..67430366,+!p10@SMAD3!0.54!2.44!SMAD3;;chr17:46132044..46132080,+!p4@NFE2L1!0.54!2.44!NFE2L1;;chr6:28321909..28321965,-!p3@ZNF323!0.54!2.44!ZNF323;;chr6:28321971..28321995,-!p1@ZNF323!0.54!2.44!ZNF323;;chr7:1577899..1577943,+!p3@MAFK!0.54!2.44!MAFK;;chr7:27183141..27183152,-!p6@HOXA5!0.54!2.44!HOXA5;;chr9:127269661..127269719,-!p1@NR5A1!0.54!2.44!NR5A1;;chr12:54393880..54393962,+!p1@HOXC9!0.54!2.44!HOXC9;;chr12:80085120..80085156,-!p14@PAWR!0.54!2.44!PAWR;;chr1:42384343..42384380,-!p4@HIVEP3!0.54!2.44!HIVEP3;;chr1:42384532..42384603,-!p2@HIVEP3!0.54!2.44!HIVEP3;;chr21:36260325..36260341,-!p14@RUNX1!0.54!2.44!RUNX1;;chr2:102091590..102091601,-!p5@RFX8!0.54!2.44!RFX8;;chr3:141087562..141087594,+!p12@ZBTB38!0.54!2.44!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!0.53!7.73!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!0.53!3.25!ZFPM2;;chrX:128657457..128657475,-!p1@SMARCA1!0.52!34.18!SMARCA1;;chr17:46622070..46622109,-!p1@HOXB2!0.52!6.10!HOXB2;;chr2:239756739..239756755,+!p2@TWIST2!0.52!4.48!TWIST2;;chr15:96881221..96881240,+!p19@NR2F2!0.52!3.25!NR2F2;;chr1:158985469..158985489,+!p7@IFI16!0.52!2.85!IFI16;;chr18:53255415..53255491,-!p1@TCF4!0.51!24.82!TCF4;;chr19:20011744..20011770,+!p1@ZNF93!0.51!10.99!ZNF93;;chr15:71184724..71184778,-!p1@THAP10!0.51!10.58!THAP10;;chr7:42276787..42276815,-!p1@GLI3!0.51!7.32!GLI3;;chr15:96874244..96874259,+!p5@NR2F2!0.51!6.51!NR2F2;;chr7:137686763..137686784,-!p5@CREB3L2!0.51!4.48!CREB3L2;;chr12:80085061..80085119,-!p6@PAWR!0.51!4.07!PAWR;;chr8:72756267..72756296,-!p4@MSC!0.51!3.66!MSC;;chr12:115122005..115122016,-!p3@TBX3!0.51!2.85!TBX3;;chr10:51565156..51565167,+!p5@NCOA4!0.50!8.54!NCOA4;;chr18:3447617..3447633,+!p20@TGIF1!0.50!2.44!TGIF1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.49!12.21!TAL1;;chr4:56412767..56412799,-!p3@CLOCK!0.49!5.70!CLOCK;;chr20:39946400..39946423,-!p3@ZHX3!0.49!4.48!ZHX3;;chr15:67418047..67418093,+!p4@SMAD3!0.49!2.85!SMAD3;;chr14:75745523..75745537,+!p1@FOS!0.48!333.63!FOS;;chr5:92918919..92918942,+!p1@NR2F1!0.48!11.80!NR2F1;;chr14:62203595..62203676,+!p4@HIF1A!0.48!4.48!HIF1A;;chr12:115122318..115122331,-!p2@TBX3!0.48!2.03!TBX3;;chr12:26277994..26278001,-!p6@BHLHE41!0.48!2.03!BHLHE41;;chr12:54402745..54402788,+!p1@HOXC8!0.48!2.03!HOXC8;;chr12:66218904..66218913,+!p11@HMGA2!0.48!2.03!HMGA2;;chr12:8186270..8186292,+!p3@FOXJ2!0.48!2.03!FOXJ2;;chr14:62214151..62214164,+!p11@HIF1A!0.48!2.03!HIF1A;;c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| ||
Line 38: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11757-123H2 | |id=FF:11757-123H2 | ||
|is_a=EFO:0002091;;FF:0000275 | |is_a=EFO:0002091;;FF:0000275 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12373 | |||
|library_id_phase_based=2:CNhs12373 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11757 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11757 | |||
|name=mesenchymal precursor cell - ovarian cancer right ovary, donor1 | |name=mesenchymal precursor cell - ovarian cancer right ovary, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12373,LSID914,release011,COMPLETED | |profile_hcage=CNhs12373,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=123 | |rna_box=123 | ||
Line 62: | Line 78: | ||
|rna_weight_ug=35.03115 | |rna_weight_ug=35.03115 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 83: | Line 100: | ||
|top_motifs=HSF1,2:2.22163968276;GZF1:1.69969883116;HOX{A5,B5}:1.65420910279;POU3F1..4:1.61437249891;NKX3-2:1.59219151732;EN1,2:1.30066456729;GCM1,2:1.16896335578;PAX1,9:1.15633894174;NFIX:1.11562107666;HOX{A4,D4}:1.1103687275;NR3C1:1.07269339892;ZNF384:1.04173709509;SRF:1.00800489138;ALX1:1.00081623947;ZIC1..3:0.989174804033;FOX{I1,J2}:0.989062848748;MYBL2:0.983484416301;NFATC1..3:0.964643426633;ALX4:0.956439510924;NFE2L1:0.940558839402;UFEwm:0.916601187538;CDC5L:0.908214960182;AIRE:0.859361131126;TLX1..3_NFIC{dimer}:0.812735058377;IKZF1:0.789189549762;XBP1:0.780782116248;NKX2-1,4:0.736127484543;GATA4:0.727969610349;NKX2-2,8:0.713871969117;ZNF238:0.701528452268;HIF1A:0.693743938413;EVI1:0.688733472744;TBX4,5:0.688290300964;TBP:0.680571850821;TEF:0.666136374793;FOXM1:0.648408281686;NFE2L2:0.647190335602;PAX8:0.623966986821;TEAD1:0.621468915984;E2F1..5:0.597051966618;CRX:0.592025327045;PRDM1:0.586980153367;PAX4:0.581828378703;KLF4:0.541958040552;BACH2:0.533980069404;FOS_FOS{B,L1}_JUN{B,D}:0.530183212267;HOXA9_MEIS1:0.528981812109;JUN:0.504888206774;ELK1,4_GABP{A,B1}:0.502578523489;GLI1..3:0.497466769964;NKX3-1:0.485904062526;ZBTB16:0.481144776286;SOX17:0.480944645072;TP53:0.470845835854;FOSL2:0.459351150934;HBP1_HMGB_SSRP1_UBTF:0.455760974619;GFI1B:0.427308580382;HLF:0.417845717724;SMAD1..7,9:0.409361049346;MYB:0.379817989471;ADNP_IRX_SIX_ZHX:0.370664343468;GFI1:0.35011071866;MZF1:0.310829616019;MAFB:0.30948789507;POU1F1:0.306291146797;NFE2:0.302466288296;LEF1_TCF7_TCF7L1,2:0.299144204114;AHR_ARNT_ARNT2:0.285801692217;EP300:0.282845447507;CDX1,2,4:0.2777629124;ONECUT1,2:0.276854345224;ELF1,2,4:0.271640998108;SOX2:0.26939850121;TFDP1:0.256557377344;TAL1_TCF{3,4,12}:0.24650676297;RFX1:0.228250908856;ESR1:0.220002013051;FOXN1:0.217708810648;PAX2:0.20904126503;POU6F1:0.199871236661;ZBTB6:0.173287044716;AR:0.158307080131;NRF1:0.148529619081;TLX2:0.141051952133;STAT1,3:0.140739543125;PAX6:0.138141974549;STAT2,4,6:0.136758318539;GTF2I:0.133810598403;YY1:0.12928415709;TFCP2:0.114147184405;FOXD3:0.108867504145;POU5F1:0.0943248450138;ZNF143:0.0859396652925;IRF7:0.0811149641558;ARID5B:0.0579524516054;HMGA1,2:0.0472405216441;RUNX1..3:0.0471746943181;NFIL3:0.046457317114;MAZ:0.0443759278263;IRF1,2:0.031178974703;ATF6:0.0305628901212;NHLH1,2:0.0272059552895;LHX3,4:-0.0147720889919;XCPE1{core}:-0.0256200298341;NR1H4:-0.0305014550609;PAX3,7:-0.0310038082239;PBX1:-0.033420493461;NANOG{mouse}:-0.0462988109215;MTE{core}:-0.0629541279039;GTF2A1,2:-0.0826089005731;EBF1:-0.0975567830015;OCT4_SOX2{dimer}:-0.09936405759;T:-0.106742083818;HNF1A:-0.10765353196;ZNF148:-0.113797273933;NFKB1_REL_RELA:-0.14010807706;TFAP4:-0.141936656324;PRRX1,2:-0.147159669488;NFY{A,B,C}:-0.1522096684;SPZ1:-0.156747262782;FOXO1,3,4:-0.171059352718;MEF2{A,B,C,D}:-0.188423302106;HAND1,2:-0.190339046632;HES1:-0.191915070305;SOX5:-0.218708238108;DMAP1_NCOR{1,2}_SMARC:-0.224847562111;ATF2:-0.234563724811;MYFfamily:-0.237772873976;HMX1:-0.255979995097;ETS1,2:-0.263749264008;POU2F1..3:-0.302725934165;CEBPA,B_DDIT3:-0.308954912839;GATA6:-0.311091919487;RFX2..5_RFXANK_RFXAP:-0.319686676381;RXRA_VDR{dimer}:-0.320268250605;RXR{A,B,G}:-0.324737400458;TGIF1:-0.335035726982;FOXP3:-0.337950123791;SPI1:-0.339135654262;ATF5_CREB3:-0.342229324028;bHLH_family:-0.345421040912;PPARG:-0.346296395014;HNF4A_NR2F1,2:-0.385792623364;PAX5:-0.39915014167;SPIB:-0.42434357336;FOXL1:-0.425287763651;RREB1:-0.426542616167;LMO2:-0.433673312479;NKX6-1,2:-0.434570641587;SNAI1..3:-0.449612013362;HOX{A6,A7,B6,B7}:-0.450054565625;MED-1{core}:-0.466525546717;SOX{8,9,10}:-0.489205587093;STAT5{A,B}:-0.507459582511;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.529477894822;MTF1:-0.529615659849;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.540364048803;CREB1:-0.554712189868;SP1:-0.587773166142;REST:-0.596471257776;NR6A1:-0.608495988699;ZFP161:-0.650326040934;PATZ1:-0.65233936652;FOXA2:-0.668895787783;ZEB1:-0.679579114814;MYOD1:-0.705359652155;CUX2:-0.708481096518;VSX1,2:-0.728289700333;NANOG:-0.736968928241;HIC1:-0.739150100205;IKZF2:-0.740690343203;FOXQ1:-0.750189679987;TOPORS:-0.751158902568;SREBF1,2:-0.755161479284;DBP:-0.776595491198;RORA:-0.78348172737;ATF4:-0.790764335298;RBPJ:-0.806109751206;ESRRA:-0.822543417621;FOX{D1,D2}:-0.826936638942;EGR1..3:-0.936139277285;NR5A1,2:-0.948048115572;FOXP1:-0.949522671664;TFAP2B:-0.949668822657;TFAP2{A,C}:-0.965668673685;ZNF423:-1.0143860543;NKX2-3_NKX2-5:-1.0192807357;BPTF:-1.0356551515;BREu{core}:-1.03655282353;PDX1:-1.06347682511;FOX{F1,F2,J1}:-1.26319107816;PITX1..3:-1.85310199227 | |top_motifs=HSF1,2:2.22163968276;GZF1:1.69969883116;HOX{A5,B5}:1.65420910279;POU3F1..4:1.61437249891;NKX3-2:1.59219151732;EN1,2:1.30066456729;GCM1,2:1.16896335578;PAX1,9:1.15633894174;NFIX:1.11562107666;HOX{A4,D4}:1.1103687275;NR3C1:1.07269339892;ZNF384:1.04173709509;SRF:1.00800489138;ALX1:1.00081623947;ZIC1..3:0.989174804033;FOX{I1,J2}:0.989062848748;MYBL2:0.983484416301;NFATC1..3:0.964643426633;ALX4:0.956439510924;NFE2L1:0.940558839402;UFEwm:0.916601187538;CDC5L:0.908214960182;AIRE:0.859361131126;TLX1..3_NFIC{dimer}:0.812735058377;IKZF1:0.789189549762;XBP1:0.780782116248;NKX2-1,4:0.736127484543;GATA4:0.727969610349;NKX2-2,8:0.713871969117;ZNF238:0.701528452268;HIF1A:0.693743938413;EVI1:0.688733472744;TBX4,5:0.688290300964;TBP:0.680571850821;TEF:0.666136374793;FOXM1:0.648408281686;NFE2L2:0.647190335602;PAX8:0.623966986821;TEAD1:0.621468915984;E2F1..5:0.597051966618;CRX:0.592025327045;PRDM1:0.586980153367;PAX4:0.581828378703;KLF4:0.541958040552;BACH2:0.533980069404;FOS_FOS{B,L1}_JUN{B,D}:0.530183212267;HOXA9_MEIS1:0.528981812109;JUN:0.504888206774;ELK1,4_GABP{A,B1}:0.502578523489;GLI1..3:0.497466769964;NKX3-1:0.485904062526;ZBTB16:0.481144776286;SOX17:0.480944645072;TP53:0.470845835854;FOSL2:0.459351150934;HBP1_HMGB_SSRP1_UBTF:0.455760974619;GFI1B:0.427308580382;HLF:0.417845717724;SMAD1..7,9:0.409361049346;MYB:0.379817989471;ADNP_IRX_SIX_ZHX:0.370664343468;GFI1:0.35011071866;MZF1:0.310829616019;MAFB:0.30948789507;POU1F1:0.306291146797;NFE2:0.302466288296;LEF1_TCF7_TCF7L1,2:0.299144204114;AHR_ARNT_ARNT2:0.285801692217;EP300:0.282845447507;CDX1,2,4:0.2777629124;ONECUT1,2:0.276854345224;ELF1,2,4:0.271640998108;SOX2:0.26939850121;TFDP1:0.256557377344;TAL1_TCF{3,4,12}:0.24650676297;RFX1:0.228250908856;ESR1:0.220002013051;FOXN1:0.217708810648;PAX2:0.20904126503;POU6F1:0.199871236661;ZBTB6:0.173287044716;AR:0.158307080131;NRF1:0.148529619081;TLX2:0.141051952133;STAT1,3:0.140739543125;PAX6:0.138141974549;STAT2,4,6:0.136758318539;GTF2I:0.133810598403;YY1:0.12928415709;TFCP2:0.114147184405;FOXD3:0.108867504145;POU5F1:0.0943248450138;ZNF143:0.0859396652925;IRF7:0.0811149641558;ARID5B:0.0579524516054;HMGA1,2:0.0472405216441;RUNX1..3:0.0471746943181;NFIL3:0.046457317114;MAZ:0.0443759278263;IRF1,2:0.031178974703;ATF6:0.0305628901212;NHLH1,2:0.0272059552895;LHX3,4:-0.0147720889919;XCPE1{core}:-0.0256200298341;NR1H4:-0.0305014550609;PAX3,7:-0.0310038082239;PBX1:-0.033420493461;NANOG{mouse}:-0.0462988109215;MTE{core}:-0.0629541279039;GTF2A1,2:-0.0826089005731;EBF1:-0.0975567830015;OCT4_SOX2{dimer}:-0.09936405759;T:-0.106742083818;HNF1A:-0.10765353196;ZNF148:-0.113797273933;NFKB1_REL_RELA:-0.14010807706;TFAP4:-0.141936656324;PRRX1,2:-0.147159669488;NFY{A,B,C}:-0.1522096684;SPZ1:-0.156747262782;FOXO1,3,4:-0.171059352718;MEF2{A,B,C,D}:-0.188423302106;HAND1,2:-0.190339046632;HES1:-0.191915070305;SOX5:-0.218708238108;DMAP1_NCOR{1,2}_SMARC:-0.224847562111;ATF2:-0.234563724811;MYFfamily:-0.237772873976;HMX1:-0.255979995097;ETS1,2:-0.263749264008;POU2F1..3:-0.302725934165;CEBPA,B_DDIT3:-0.308954912839;GATA6:-0.311091919487;RFX2..5_RFXANK_RFXAP:-0.319686676381;RXRA_VDR{dimer}:-0.320268250605;RXR{A,B,G}:-0.324737400458;TGIF1:-0.335035726982;FOXP3:-0.337950123791;SPI1:-0.339135654262;ATF5_CREB3:-0.342229324028;bHLH_family:-0.345421040912;PPARG:-0.346296395014;HNF4A_NR2F1,2:-0.385792623364;PAX5:-0.39915014167;SPIB:-0.42434357336;FOXL1:-0.425287763651;RREB1:-0.426542616167;LMO2:-0.433673312479;NKX6-1,2:-0.434570641587;SNAI1..3:-0.449612013362;HOX{A6,A7,B6,B7}:-0.450054565625;MED-1{core}:-0.466525546717;SOX{8,9,10}:-0.489205587093;STAT5{A,B}:-0.507459582511;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.529477894822;MTF1:-0.529615659849;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.540364048803;CREB1:-0.554712189868;SP1:-0.587773166142;REST:-0.596471257776;NR6A1:-0.608495988699;ZFP161:-0.650326040934;PATZ1:-0.65233936652;FOXA2:-0.668895787783;ZEB1:-0.679579114814;MYOD1:-0.705359652155;CUX2:-0.708481096518;VSX1,2:-0.728289700333;NANOG:-0.736968928241;HIC1:-0.739150100205;IKZF2:-0.740690343203;FOXQ1:-0.750189679987;TOPORS:-0.751158902568;SREBF1,2:-0.755161479284;DBP:-0.776595491198;RORA:-0.78348172737;ATF4:-0.790764335298;RBPJ:-0.806109751206;ESRRA:-0.822543417621;FOX{D1,D2}:-0.826936638942;EGR1..3:-0.936139277285;NR5A1,2:-0.948048115572;FOXP1:-0.949522671664;TFAP2B:-0.949668822657;TFAP2{A,C}:-0.965668673685;ZNF423:-1.0143860543;NKX2-3_NKX2-5:-1.0192807357;BPTF:-1.0356551515;BREu{core}:-1.03655282353;PDX1:-1.06347682511;FOX{F1,F2,J1}:-1.26319107816;PITX1..3:-1.85310199227 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11757-123H2;search_select_hide=table117:FF:11757-123H2 | |||
}} | }} |
Latest revision as of 18:18, 4 June 2020
Name: | mesenchymal precursor cell - ovarian cancer right ovary, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12373 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12373
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12373
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.323 |
10 | 10 | 0.335 |
100 | 100 | 0.426 |
101 | 101 | 0.727 |
102 | 102 | 0.336 |
103 | 103 | 0.162 |
104 | 104 | 0.882 |
105 | 105 | 0.147 |
106 | 106 | 0.635 |
107 | 107 | 0.293 |
108 | 108 | 0.339 |
109 | 109 | 0.831 |
11 | 11 | 0.866 |
110 | 110 | 0.00812 |
111 | 111 | 0.141 |
112 | 112 | 0.807 |
113 | 113 | 0.0318 |
114 | 114 | 0.309 |
115 | 115 | 0.612 |
116 | 116 | 0.662 |
117 | 117 | 0.285 |
118 | 118 | 0.993 |
119 | 119 | 0.483 |
12 | 12 | 0.41 |
120 | 120 | 0.157 |
121 | 121 | 0.884 |
122 | 122 | 0.352 |
123 | 123 | 5.9201e-4 |
124 | 124 | 0.525 |
125 | 125 | 0.574 |
126 | 126 | 0.748 |
127 | 127 | 0.777 |
128 | 128 | 0.723 |
129 | 129 | 0.793 |
13 | 13 | 0.162 |
130 | 130 | 0.8 |
131 | 131 | 0.00772 |
132 | 132 | 0.825 |
133 | 133 | 0.856 |
134 | 134 | 0.922 |
135 | 135 | 0.658 |
136 | 136 | 0.706 |
137 | 137 | 0.601 |
138 | 138 | 0.857 |
139 | 139 | 0.282 |
14 | 14 | 0.109 |
140 | 140 | 0.698 |
141 | 141 | 0.852 |
142 | 142 | 0.732 |
143 | 143 | 0.442 |
144 | 144 | 0.826 |
145 | 145 | 0.949 |
146 | 146 | 0.981 |
147 | 147 | 0.0382 |
148 | 148 | 0.733 |
149 | 149 | 0.398 |
15 | 15 | 0.313 |
150 | 150 | 0.645 |
151 | 151 | 0.501 |
152 | 152 | 0.926 |
153 | 153 | 0.835 |
154 | 154 | 0.491 |
155 | 155 | 0.00561 |
156 | 156 | 0.356 |
157 | 157 | 0.147 |
158 | 158 | 0.0151 |
159 | 159 | 0.128 |
16 | 16 | 0.103 |
160 | 160 | 0.771 |
161 | 161 | 0.33 |
162 | 162 | 0.617 |
163 | 163 | 0.0326 |
164 | 164 | 0.497 |
165 | 165 | 0.779 |
166 | 166 | 0.412 |
167 | 167 | 0.935 |
168 | 168 | 0.792 |
169 | 169 | 0.367 |
17 | 17 | 0.774 |
18 | 18 | 0.261 |
19 | 19 | 0.522 |
2 | 2 | 0.618 |
20 | 20 | 0.304 |
21 | 21 | 0.922 |
22 | 22 | 0.995 |
23 | 23 | 0.118 |
24 | 24 | 0.314 |
25 | 25 | 0.853 |
26 | 26 | 0.905 |
27 | 27 | 0.506 |
28 | 28 | 0.999 |
29 | 29 | 0.039 |
3 | 3 | 0.482 |
30 | 30 | 0.563 |
31 | 31 | 0.273 |
32 | 32 | 0.101 |
33 | 33 | 0.151 |
34 | 34 | 0.36 |
35 | 35 | 0.66 |
36 | 36 | 0.83 |
37 | 37 | 0.158 |
38 | 38 | 0.587 |
39 | 39 | 0.488 |
4 | 4 | 0.0741 |
40 | 40 | 0.979 |
41 | 41 | 0.902 |
42 | 42 | 0.786 |
43 | 43 | 0.737 |
44 | 44 | 0.99 |
45 | 45 | 0.408 |
46 | 46 | 0.526 |
47 | 47 | 0.979 |
48 | 48 | 0.801 |
49 | 49 | 0.0977 |
5 | 5 | 0.521 |
50 | 50 | 0.994 |
51 | 51 | 0.657 |
52 | 52 | 0.546 |
53 | 53 | 0.0404 |
54 | 54 | 0.385 |
55 | 55 | 0.128 |
56 | 56 | 0.46 |
57 | 57 | 0.938 |
58 | 58 | 0.884 |
59 | 59 | 0.94 |
6 | 6 | 0.249 |
60 | 60 | 0.681 |
61 | 61 | 0.558 |
62 | 62 | 0.55 |
63 | 63 | 0.753 |
64 | 64 | 0.468 |
65 | 65 | 0.449 |
66 | 66 | 0.905 |
67 | 67 | 0.55 |
68 | 68 | 0.851 |
69 | 69 | 0.466 |
7 | 7 | 0.844 |
70 | 70 | 0.245 |
71 | 71 | 0.0847 |
72 | 72 | 0.872 |
73 | 73 | 0.717 |
74 | 74 | 0.13 |
75 | 75 | 0.247 |
76 | 76 | 0.942 |
77 | 77 | 0.213 |
78 | 78 | 0.448 |
79 | 79 | 0.359 |
8 | 8 | 0.357 |
80 | 80 | 0.452 |
81 | 81 | 0.876 |
82 | 82 | 0.314 |
83 | 83 | 0.167 |
84 | 84 | 0.827 |
85 | 85 | 0.731 |
86 | 86 | 0.894 |
87 | 87 | 0.376 |
88 | 88 | 0.644 |
89 | 89 | 0.0732 |
9 | 9 | 0.484 |
90 | 90 | 0.192 |
91 | 91 | 0.964 |
92 | 92 | 0.671 |
93 | 93 | 0.529 |
94 | 94 | 0.781 |
95 | 95 | 0.243 |
96 | 96 | 0.504 |
97 | 97 | 0.244 |
98 | 98 | 0.134 |
99 | 99 | 0.0821 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12373
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000275 human mesenchymal precursor cell- ovarian cancer-right ovary sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002118 (right ovary)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000275 (human mesenchymal precursor cell- ovarian cancer-right ovary sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)