FFCP PHASE1:Hg19::chr2:205410189..205410218,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:205410189..205410218,+
|short_description=p2@PARD3B
|description=CAGE_peak_2_at_PARD3B_5end
|association_with_transcript=-297bp_to_ENST00000406610,ENST0000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=117583 | |EntrezGene=117583 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14446 | |HGNC=14446 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TEW8,E9PE87 | |UniProt=Q8TEW8,E9PE87 | ||
|association_with_transcript=-297bp_to_ENST00000406610,ENST00000415947,NM_057177,NM_152526,NM_205863,uc002vao.1,uc002vap.1,uc002vaq.1,uc002var.1,uc010fub.1_5end | |||
|cluster_id=chr2:205410189..205410218,+ | |||
|description=CAGE_peak_2_at_PARD3B_5end | |||
|id=chr2:205410189..205410218,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!3.63e-15!286;UBERON:0000475!1.87e-14!365;UBERON:0007023!3.00e-14!115;UBERON:0000468!2.10e-13!659;UBERON:0000467!3.89e-12!625;UBERON:0004111!5.66e-12!241;UBERON:0000480!7.22e-12!626;UBERON:0000481!2.02e-11!347;UBERON:0000483!6.57e-11!309;UBERON:0000119!1.03e-10!312;UBERON:0000073!2.76e-10!94;UBERON:0001016!2.76e-10!94;UBERON:0000062!3.14e-10!511;UBERON:0005743!7.46e-10!86;UBERON:0001017!1.54e-09!82;UBERON:0000924!4.57e-09!173;UBERON:0006601!4.57e-09!173;UBERON:0004121!5.86e-09!169;UBERON:0001049!6.19e-09!57;UBERON:0005068!6.19e-09!57;UBERON:0006241!6.19e-09!57;UBERON:0007135!6.19e-09!57;UBERON:0000955!1.48e-08!69;UBERON:0006238!1.48e-08!69;UBERON:0002616!1.64e-08!59;UBERON:0000064!2.06e-08!219;UBERON:0000033!2.09e-08!123;UBERON:0002346!2.49e-08!90;UBERON:0000025!2.65e-08!194;UBERON:0003075!2.68e-08!86;UBERON:0007284!2.68e-08!86;UBERON:0000153!4.58e-08!129;UBERON:0007811!4.58e-08!129;UBERON:0002780!2.28e-07!41;UBERON:0001890!2.28e-07!41;UBERON:0006240!2.28e-07!41;UBERON:0001007!2.85e-07!155;UBERON:0001555!2.85e-07!155;UBERON:0007026!2.85e-07!155;UBERON:0003080!3.99e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.57e-09;22!UBERON:0000160;7.07e-09;17!UBERON:0004921;9.25e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.30e-15,114;UBERON:0011216,1.64e-13,223;UBERON:0001016,1.72e-09,89;UBERON:0005409,2.99e-09,25;UBERON:0001017,3.29e-09,81;UBERON:0001049,3.80e-09,56;UBERON:0005068,3.80e-09,56;UBERON:0006241,3.80e-09,56;UBERON:0007135,3.80e-09,56;UBERON:0000160,5.87e-09,17;UBERON:0004111,7.25e-09,240;UBERON:0003075,1.11e-08,82;UBERON:0007284,1.11e-08,82;UBERON:0002346,1.33e-08,86;UBERON:0004121,1.48e-08,171;UBERON:0000924,1.48e-08,171;UBERON:0006601,1.48e-08,171;UBERON:0000073,4.10e-08,53;UBERON:0002616,4.10e-08,53;UBERON:0000955,4.36e-08,68;UBERON:0006238,4.36e-08,68;UBERON:0000483,6.06e-08,306;UBERON:0000119,1.33e-07,309;UBERON:0002780,1.63e-07,41;UBERON:0001890,1.63e-07,41;UBERON:0003080,1.63e-07,41;UBERON:0006240,1.63e-07,41;UBERON:0010314,4.54e-07,132;UBERON:0001007,6.64e-07,145;UBERON:0001555,6.64e-07,145;UBERON:0007026,6.64e-07,145 | |||
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| ||
|short_description=p2@PARD3B | |||
}} | }} |
Latest revision as of 16:35, 19 September 2015
Short description: | p2@PARD3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PARD3B_5end |
Coexpression cluster: | NA |
Association with transcript: | -297bp_to_ENST00000406610, ENST00000415947, NM_057177, NM_152526, NM_205863, uc002vao.1, uc002vap.1, uc002vaq.1, uc002var.1, uc010fub.1_5end |
EntrezGene: | PARD3B |
HGNC: | 14446 |
UniProt: | Q8TEW8E9PE87 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.30e-15 | 114 |
organ system subdivision | 1.64e-13 | 223 |
nervous system | 1.72e-09 | 89 |
gastrointestinal system | 2.99e-09 | 25 |
central nervous system | 3.29e-09 | 81 |
neural tube | 3.80e-09 | 56 |
neural rod | 3.80e-09 | 56 |
future spinal cord | 3.80e-09 | 56 |
neural keel | 3.80e-09 | 56 |
intestine | 5.87e-09 | 17 |
anatomical conduit | 7.25e-09 | 240 |
neural plate | 1.11e-08 | 82 |
presumptive neural plate | 1.11e-08 | 82 |
neurectoderm | 1.33e-08 | 86 |
ectoderm-derived structure | 1.48e-08 | 171 |
ectoderm | 1.48e-08 | 171 |
presumptive ectoderm | 1.48e-08 | 171 |
regional part of nervous system | 4.10e-08 | 53 |
regional part of brain | 4.10e-08 | 53 |
brain | 4.36e-08 | 68 |
future brain | 4.36e-08 | 68 |
epithelium | 6.06e-08 | 306 |
cell layer | 1.33e-07 | 309 |
regional part of forebrain | 1.63e-07 | 41 |
forebrain | 1.63e-07 | 41 |
anterior neural tube | 1.63e-07 | 41 |
future forebrain | 1.63e-07 | 41 |
structure with developmental contribution from neural crest | 4.54e-07 | 132 |
digestive system | 6.64e-07 | 145 |
digestive tract | 6.64e-07 | 145 |
primitive gut | 6.64e-07 | 145 |