FFCP PHASE1:Hg19::chr3:147124697..147124729,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:147124697..147124729,+
|short_description=p@chr3:147124697..147124729,+
|description=CAGE_peak_at_chr3:147124697..147124729,+
|association_with_transcript=...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:147124697..147124729,+ | |||
|coexpression_cluster_id=C1375 | |||
|description=CAGE_peak_at_chr3:147124697..147124729,+ | |||
|id=chr3:147124697..147124729,+ | |||
|ontology_enrichment_celltype=CL:0000708!4.18e-12!3;CL:0000064!6.72e-12!3;CL:0005012!6.72e-12!3;CL:0000067!6.72e-12!3;CL:0002304!6.72e-12!3;CL:0002603!1.24e-11!3;CL:0002575!6.59e-09!2;CL:0000306!6.79e-09!4;CL:0002222!6.79e-09!4;CL:0002224!6.79e-09!4;CL:0002549!1.80e-08!2;CL:0000128!2.63e-08!7;CL:0000126!2.63e-08!7;CL:0000127!2.63e-08!7;CL:0002453!2.63e-08!7;CL:0000243!8.20e-07!15;CL:0000125!8.20e-07!15;CL:0000030!8.20e-07!15;CL:0000339!8.20e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002575;1.01e-23;2!CL:0002549;8.54e-23;2!CL:0000708;8.43e-16;3!CL:0002603;1.53e-15;3!CL:0000669;2.33e-12;4!CL:0000306;6.73e-12;4!CL:0002222;6.73e-12;4!CL:0002224;6.73e-12;4!CL:0000327;3.36e-07;15!CL:0000128;3.56e-07;7!CL:0000126;3.56e-07;7!CL:0000127;3.56e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,1.01e-23,2;CL:0002549,2.08e-22,2;CL:0000708,5.80e-16,3;CL:0002603,1.32e-15,3;CL:0000669,2.33e-12,4;CL:0000306,5.40e-12,4;CL:0002222,5.40e-12,4;CL:0002224,5.40e-12,4;CL:0000327,3.02e-07,15;CL:0000128,3.35e-07,7;CL:0000126,3.35e-07,7;CL:0000127,3.35e-07,7;CL:0002453,3.35e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.05e-34;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!2.58e-46!86;UBERON:0007284!2.58e-46!86;UBERON:0005743!3.32e-45!86;UBERON:0001017!5.02e-45!82;UBERON:0002346!7.14e-44!90;UBERON:0000073!1.11e-42!94;UBERON:0001016!1.11e-42!94;UBERON:0000955!2.98e-42!69;UBERON:0006238!2.98e-42!69;UBERON:0002616!9.34e-42!59;UBERON:0001049!1.12e-36!57;UBERON:0005068!1.12e-36!57;UBERON:0006241!1.12e-36!57;UBERON:0007135!1.12e-36!57;UBERON:0000033!1.81e-35!123;UBERON:0000153!2.13e-33!129;UBERON:0007811!2.13e-33!129;UBERON:0004121!5.98e-33!169;UBERON:0003076!3.96e-32!15;UBERON:0003057!3.96e-32!15;UBERON:0000924!5.85e-32!173;UBERON:0006601!5.85e-32!173;UBERON:0004733!1.44e-28!12;UBERON:0002028!1.44e-28!12;UBERON:0007277!1.44e-28!12;UBERON:0004732!3.31e-26!13;UBERON:0002680!4.21e-25!9;UBERON:0001895!4.21e-25!9;UBERON:0010092!4.21e-25!9;UBERON:0003056!1.48e-23!61;UBERON:0002037!2.04e-22!6;UBERON:0006215!2.04e-22!6;UBERON:0002200!2.29e-20!11;UBERON:0006876!2.29e-20!11;UBERON:0001950!3.80e-17!20;UBERON:0002791!4.55e-16!33;UBERON:0000956!5.30e-16!25;UBERON:0000203!5.30e-16!25;UBERON:0007625!1.48e-15!11;UBERON:0001893!1.61e-15!34;UBERON:0002619!1.86e-15!22;UBERON:0002020!1.87e-15!34;UBERON:0003528!1.87e-15!34;UBERON:0000488!4.49e-15!4;UBERON:0002780!1.80e-14!41;UBERON:0001890!1.80e-14!41;UBERON:0006240!1.80e-14!41;UBERON:0001869!3.29e-14!32;UBERON:0003080!4.70e-14!42;UBERON:0000970!5.38e-13!20;UBERON:0000119!1.34e-12!312;UBERON:0002104!2.70e-12!21;UBERON:0005284!3.52e-12!5;UBERON:0003210!4.18e-12!3;UBERON:0001801!5.41e-12!14;UBERON:0001778!6.72e-12!3;UBERON:0001775!6.72e-12!3;UBERON:0000020!4.46e-11!23;UBERON:0000019!5.80e-11!19;UBERON:0000047!5.80e-11!19;UBERON:0004088!5.80e-11!19;UBERON:0003072!5.80e-11!19;UBERON:0003071!5.80e-11!19;UBERON:0004128!5.80e-11!19;UBERON:0001032!1.52e-10!24;UBERON:0004456!1.52e-10!24;UBERON:0000483!3.25e-10!309;UBERON:0000064!3.91e-10!219;UBERON:0002203!4.64e-10!6;UBERON:0001768!4.64e-10!6;UBERON:0001456!8.69e-10!21;UBERON:0000477!2.54e-09!286;UBERON:0000475!4.70e-09!365;UBERON:0007023!5.73e-09!115;UBERON:0010077!6.79e-09!4;UBERON:0005389!6.79e-09!4;UBERON:0000484!6.79e-09!4;UBERON:0002546!6.79e-09!4;UBERON:0000965!6.79e-09!4;UBERON:0001803!6.79e-09!4;UBERON:0003073!6.79e-09!4;UBERON:0005426!6.79e-09!4;UBERON:0000063!9.70e-09!97;UBERON:0003947!1.80e-08!2;UBERON:0005629!1.80e-08!2;UBERON:0005358!1.80e-08!2;UBERON:0001886!1.80e-08!2;UBERON:0004086!1.80e-08!2;UBERON:0005282!1.80e-08!2;UBERON:0005281!1.80e-08!2;UBERON:0001870!8.06e-08!2;UBERON:0000025!8.34e-08!194;UBERON:0002298!4.79e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.09e-46;6!UBERON:0002680;5.57e-31;9!UBERON:0001895;5.57e-31;9!UBERON:0004733;2.99e-23;12!UBERON:0002028;2.99e-23;12!UBERON:0005629;8.54e-23;2!UBERON:0005358;8.54e-23;2!UBERON:0001886;8.54e-23;2!UBERON:0004086;8.54e-23;2!UBERON:0005282;8.54e-23;2!UBERON:0005281;8.54e-23;2!UBERON:0004732;1.83e-21;13!UBERON:0005284;2.96e-20;5!UBERON:0006876;2.91e-16;11!UBERON:0003210;8.43e-16;3!UBERON:0010077;6.73e-12;4!UBERON:0005389;6.73e-12;4!UBERON:0000484;6.73e-12;4!UBERON:0000965;6.73e-12;4!UBERON:0001803;6.73e-12;4!UBERON:0007625;1.28e-09;11!UBERON:0001801;1.15e-07;14!UBERON:0001016;1.46e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.66e-46,6;UBERON:0006215,1.66e-46,6;UBERON:0002680,4.78e-31,9;UBERON:0001895,4.78e-31,9;UBERON:0010092,4.78e-31,9;UBERON:0004733,2.67e-23,12;UBERON:0002028,2.67e-23,12;UBERON:0007277,2.67e-23,12;UBERON:0005629,2.08e-22,2;UBERON:0005358,2.08e-22,2;UBERON:0001886,2.08e-22,2;UBERON:0004086,2.08e-22,2;UBERON:0005282,2.08e-22,2;UBERON:0005281,2.08e-22,2;UBERON:0004732,1.65e-21,13;UBERON:0005284,4.41e-20,5;UBERON:0003076,1.21e-18,15;UBERON:0003057,1.21e-18,15;UBERON:0006876,3.78e-16,11;UBERON:0003210,5.80e-16,3;UBERON:0010077,5.40e-12,4;UBERON:0005389,5.40e-12,4;UBERON:0000484,5.40e-12,4;UBERON:0002546,5.40e-12,4;UBERON:0000965,5.40e-12,4;UBERON:0001803,5.40e-12,4;UBERON:0003073,5.40e-12,4;UBERON:0005426,5.40e-12,4;UBERON:0000955,1.20e-11,68;UBERON:0006238,1.20e-11,68;UBERON:0003075,9.99e-10,82;UBERON:0007284,9.99e-10,82;UBERON:0007625,1.16e-09,11;UBERON:0001017,1.20e-09,81;UBERON:0002346,3.16e-09,86;UBERON:0001016,1.36e-08,89;UBERON:0001801,1.06e-07,14;UBERON:0010371,1.90e-07,104;UBERON:0004121,1.99e-07,171;UBERON:0000924,1.99e-07,171;UBERON:0006601,1.99e-07,171;UBERON:0000073,4.72e-07,53;UBERON:0002616,4.72e-07,53;UBERON:0010314,5.37e-07,132 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,1.60057375499824,0.204000691244253,1.25381888591235,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3633704291017,0.665188192387692,0.790513071238134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,1.05950199351452,1.15235184896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514703430895577,0,0,0,0,0,0,1.44331342025273,1.507095264676,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1396703616701,1.74384027533312,0.66004457238855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06983588134496,4.80400793335198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48863347743867,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33496573924465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,9.15490417902499,2.76448149828062,10.0486190444206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0.30607276163049,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0.776503360757966,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0.504143392443436,0.207471757392654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,1.09394961803644,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0.339848664884159,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0.521574816907738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,1.41994405973866,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,1.60057375499824,0.204000691244253,1.25381888591235,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3633704291017,0.665188192387692,0.790513071238134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,1.05950199351452,1.15235184896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514703430895577,0,0,0,0,0,0,1.44331342025273,1.507095264676,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1396703616701,1.74384027533312,0.66004457238855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06983588134496,4.80400793335198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48863347743867,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33496573924465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,9.15490417902499,2.76448149828062,10.0486190444206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0.30607276163049,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0.776503360757966,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0.504143392443436,0.207471757392654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,1.09394961803644,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0.339848664884159,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0.521574816907738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,1.41994405973866,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:147124697..147124729,+ | |||
}} | }} |
Latest revision as of 16:44, 29 July 2015
Short description: | p@chr3:147124697..147124729, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:147124697..147124729, + |
Coexpression cluster: | C1375_cerebellum_Pericytes_extraskeletal_neuroblastoma_teratocarcinoma_neuroectodermal_H9 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 1.01e-23 | 2 |
fibroblast of choroid plexus | 2.08e-22 | 2 |
leptomeningeal cell | 5.80e-16 | 3 |
astrocyte of the cerebellum | 1.32e-15 | 3 |
pericyte cell | 2.33e-12 | 4 |
crystallin accumulating cell | 5.40e-12 | 4 |
vertebrate lens cell | 5.40e-12 | 4 |
lens epithelial cell | 5.40e-12 | 4 |
extracellular matrix secreting cell | 3.02e-07 | 15 |
oligodendrocyte | 3.35e-07 | 7 |
macroglial cell | 3.35e-07 | 7 |
astrocyte | 3.35e-07 | 7 |
oligodendrocyte precursor cell | 3.35e-07 | 7 |