FF:10201-103F3: Difference between revisions

Latest revision as of 13:55, 3 June 2020

Name:	seminal vesicle, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12851
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	24
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234214-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005681

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12851		CAGE		DRX008718		DRR009590

Accession ID Hg19

Library id		BAM		CTSS
CNhs12851		DRZ001015		DRZ002400

Accession ID Hg38

Library id		BAM		CTSS
CNhs12851		DRZ012365		DRZ013750

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0322
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.372
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.153
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.153
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.144
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0438
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.191
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.302
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.266
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.266
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	1.31
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.462
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	1.115
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0971
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0807
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0.153
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.522
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.161
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.549
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.153
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.266
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.635
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.153
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.153
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.266
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.266
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.153
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.753
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	1.397
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.753
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0946
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.153
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.494
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12851

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0687
MA0003.1	MA0003.1	0.388
MA0004.1	MA0004.1	0.02
MA0006.1	MA0006.1	0.0702
MA0007.1	MA0007.1	0.582
MA0009.1	MA0009.1	0.851
MA0014.1	MA0014.1	0.265
MA0017.1	MA0017.1	0.0428
MA0018.2	MA0018.2	0.324
MA0019.1	MA0019.1	0.163
MA0024.1	MA0024.1	8.44882e-4
MA0025.1	MA0025.1	0.174
MA0027.1	MA0027.1	0.733
MA0028.1	MA0028.1	2.06054e-5
MA0029.1	MA0029.1	0.298
MA0030.1	MA0030.1	0.142
MA0031.1	MA0031.1	0.649
MA0035.2	MA0035.2	0.238
MA0038.1	MA0038.1	0.0176
MA0039.2	MA0039.2	0.00937
MA0040.1	MA0040.1	0.87
MA0041.1	MA0041.1	0.269
MA0042.1	MA0042.1	0.396
MA0043.1	MA0043.1	0.02
MA0046.1	MA0046.1	0.0619
MA0047.2	MA0047.2	0.732
MA0048.1	MA0048.1	0.0298
MA0050.1	MA0050.1	0.17
MA0051.1	MA0051.1	0.106
MA0052.1	MA0052.1	0.959
MA0055.1	MA0055.1	2.79614e-4
MA0057.1	MA0057.1	0.959
MA0058.1	MA0058.1	8.02065e-4
MA0059.1	MA0059.1	7.81196e-4
MA0060.1	MA0060.1	1.43109e-4
MA0061.1	MA0061.1	3.24733e-6
MA0062.2	MA0062.2	1.39999e-8
MA0065.2	MA0065.2	0.104
MA0066.1	MA0066.1	0.0324
MA0067.1	MA0067.1	0.00141
MA0068.1	MA0068.1	0.63
MA0069.1	MA0069.1	0.256
MA0070.1	MA0070.1	0.0778
MA0071.1	MA0071.1	0.244
MA0072.1	MA0072.1	0.191
MA0073.1	MA0073.1	0.615
MA0074.1	MA0074.1	0.236
MA0076.1	MA0076.1	1.34959e-6
MA0077.1	MA0077.1	0.765
MA0078.1	MA0078.1	0.157
MA0079.2	MA0079.2	0.771
MA0080.2	MA0080.2	7.17591e-5
MA0081.1	MA0081.1	7.94028e-4
MA0083.1	MA0083.1	0.0347
MA0084.1	MA0084.1	0.336
MA0087.1	MA0087.1	0.223
MA0088.1	MA0088.1	0.027
MA0090.1	MA0090.1	0.351
MA0091.1	MA0091.1	0.32
MA0092.1	MA0092.1	0.753
MA0093.1	MA0093.1	0.0182
MA0099.2	MA0099.2	3.2776e-25
MA0100.1	MA0100.1	0.01
MA0101.1	MA0101.1	5.67529e-8
MA0102.2	MA0102.2	0.0849
MA0103.1	MA0103.1	0.00364
MA0104.2	MA0104.2	1.64627e-5
MA0105.1	MA0105.1	1.44671e-5
MA0106.1	MA0106.1	0.102
MA0107.1	MA0107.1	3.26028e-7
MA0108.2	MA0108.2	0.11
MA0111.1	MA0111.1	0.437
MA0112.2	MA0112.2	0.598
MA0113.1	MA0113.1	0.326
MA0114.1	MA0114.1	0.00745
MA0115.1	MA0115.1	0.433
MA0116.1	MA0116.1	4.8953e-4
MA0117.1	MA0117.1	0.438
MA0119.1	MA0119.1	0.503
MA0122.1	MA0122.1	0.956
MA0124.1	MA0124.1	0.961
MA0125.1	MA0125.1	0.341
MA0131.1	MA0131.1	0.146
MA0135.1	MA0135.1	0.271
MA0136.1	MA0136.1	1.34262e-5
MA0137.2	MA0137.2	0.222
MA0138.2	MA0138.2	0.472
MA0139.1	MA0139.1	0.854
MA0140.1	MA0140.1	0.0363
MA0141.1	MA0141.1	0.241
MA0142.1	MA0142.1	0.479
MA0143.1	MA0143.1	0.878
MA0144.1	MA0144.1	0.919
MA0145.1	MA0145.1	0.234
MA0146.1	MA0146.1	0.746
MA0147.1	MA0147.1	5.91815e-5
MA0148.1	MA0148.1	0.611
MA0149.1	MA0149.1	0.0828
MA0150.1	MA0150.1	2.54216e-5
MA0152.1	MA0152.1	0.557
MA0153.1	MA0153.1	0.00218
MA0154.1	MA0154.1	0.0115
MA0155.1	MA0155.1	0.707
MA0156.1	MA0156.1	1.61738e-8
MA0157.1	MA0157.1	0.348
MA0159.1	MA0159.1	0.894
MA0160.1	MA0160.1	0.524
MA0162.1	MA0162.1	0.897
MA0163.1	MA0163.1	3.08835e-4
MA0164.1	MA0164.1	0.588
MA0258.1	MA0258.1	0.848
MA0259.1	MA0259.1	0.0116

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12851

Novel motif	Logo	P-value
1	1	0.25
10	10	0.368
100	100	0.508
101	101	0.694
102	102	0.934
103	103	0.5
104	104	0.688
105	105	0.0556
106	106	0.621
107	107	0.415
108	108	0.337
109	109	0.023
11	11	0.127
110	110	0.0262
111	111	0.517
112	112	0.314
113	113	0.367
114	114	0.969
115	115	0.39
116	116	0.446
117	117	0.103
118	118	0.608
119	119	0.248
12	12	0.364
120	120	0.0329
121	121	0.831
122	122	0.852
123	123	0.395
124	124	0.184
125	125	0.696
126	126	0.844
127	127	0.207
128	128	0.183
129	129	0.832
13	13	0.223
130	130	0.027
131	131	0.678
132	132	0.00839
133	133	0.155
134	134	0.837
135	135	0.482
136	136	0.873
137	137	0.176
138	138	0.406
139	139	0.602
14	14	0.932
140	140	0.935
141	141	0.796
142	142	0.601
143	143	0.247
144	144	0.528
145	145	0.981
146	146	0.409
147	147	0.665
148	148	0.75
149	149	0.887
15	15	0.0658
150	150	0.798
151	151	0.816
152	152	0.895
153	153	0.631
154	154	0.764
155	155	0.707
156	156	0.124
157	157	0.29
158	158	0.892
159	159	0.0879
16	16	0.979
160	160	0.459
161	161	0.575
162	162	0.417
163	163	0.703
164	164	0.109
165	165	0.845
166	166	0.251
167	167	1
168	168	0.417
169	169	0.26
17	17	0.888
18	18	0.0444
19	19	0.115
2	2	0.00904
20	20	0.149
21	21	0.597
22	22	0.891
23	23	0.737
24	24	0.272
25	25	0.141
26	26	0.379
27	27	0.988
28	28	0.717
29	29	0.0663
3	3	0.174
30	30	0.112
31	31	0.744
32	32	0.0767
33	33	0.13
34	34	0.986
35	35	0.792
36	36	0.00832
37	37	0.378
38	38	0.744
39	39	0.319
4	4	0.126
40	40	0.0183
41	41	0.00232
42	42	0.0586
43	43	0.338
44	44	0.961
45	45	0.657
46	46	0.144
47	47	0.242
48	48	0.365
49	49	0.252
5	5	0.214
50	50	0.431
51	51	0.287
52	52	0.0559
53	53	0.473
54	54	0.541
55	55	0.382
56	56	0.841
57	57	0.747
58	58	0.894
59	59	0.548
6	6	0.493
60	60	0.943
61	61	0.558
62	62	0.491
63	63	0.998
64	64	0.358
65	65	0.803
66	66	0.0131
67	67	0.609
68	68	0.869
69	69	0.561
7	7	0.109
70	70	0.727
71	71	0.551
72	72	0.31
73	73	0.0679
74	74	0.383
75	75	0.0975
76	76	0.12
77	77	0.121
78	78	0.842
79	79	0.773
8	8	0.975
80	80	0.0136
81	81	0.859
82	82	0.531
83	83	0.972
84	84	0.934
85	85	0.689
86	86	0.798
87	87	0.12
88	88	0.94
89	89	0.458
9	9	0.485
90	90	0.865
91	91	0.407
92	92	0.391
93	93	0.0605
94	94	0.0946
95	95	1.67385e-5
96	96	0.302
97	97	0.513
98	98	0.541
99	99	0.489

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12851

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010201 human seminal vesicle - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000473 (testis)
0000998 (seminal vesicle)
0000991 (gonad)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0006868 (seminal fluid secreting gland)
0005904 (duct of male reproductive system)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0002530 (gland)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
0006947 (male genital duct)
0004054 (internal male genitalia)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010201 (human seminal vesicle - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0005754 (rostral part of nephrogenic cord)
UBERON:0007687 (kidney field)
UBERON:0007297 (presumptive pronephric mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005681
+|accession_numbers=CAGE;DRX008718;DRR009590;DRZ001015;DRZ002400;DRZ012365;DRZ013750
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000473,UBERON:0000998,UBERON:0000991,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0006868,UBERON:0005904,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0002530,UBERON:0004175,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.94!873.45!GATA2;;chr11:34642612..34642646,+!p1@EHF!2.59!385.28!EHF;;chr11:34645791..34645836,+!p3@EHF!2.41!257.42!EHF;;chr12:115122318..115122331,-!p2@TBX3!2.28!188.41!TBX3;;chr10:8096631..8096660,+!p1@GATA3!2.23!201.53!GATA3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.18!149.46!POU3F3;;chr10:119301928..119301955,+!p7@EMX2!2.12!131.67!EMX2;;chr11:34535297..34535317,-!p1@ELF5!2.12!129.98!ELF5;;chr9:102584159..102584174,+!p2@NR4A3!2.05!192.64!NR4A3;;chr12:52445218..52445237,+!p1@NR4A1!2.00!1176.59!NR4A1;;chr17:46682321..46682362,-!p1@HOXB6!1.95!88.91!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.94!85.95!ELF5;;chr2:157189180..157189290,-!p1@NR4A2!1.88!373.85!NR4A2;;chr17:46675558..46675577,-!p2@HOXB6!1.87!72.40!HOXB6;;chr11:34642656..34642667,+!p2@EHF!1.85!69.86!EHF;;chr10:119302232..119302265,+!p1@EMX2!1.83!66.05!EMX2;;chr1:151804244..151804310,-!p1@RORC!1.83!66.05!RORC;;chr12:115122303..115122314,-!p6@TBX3!1.81!63.08!TBX3;;chr9:77112244..77112262,+!p1@RORB!1.79!67.32!RORB;;chr16:54320617..54320643,-!p3@IRX3!1.77!74.09!IRX3;;chr6:134210243..134210257,+!p1@TCF21!1.77!58.43!TCF21;;chr11:34535276..34535287,-!p3@ELF5!1.69!48.27!ELF5;;chr1:209979467..209979494,-!p1@IRF6!1.65!48.69!IRF6;;chr17:46692457..46692484,-!p2@HOXB8!1.65!43.19!HOXB8;;chr8:102504651..102504683,+!p1@GRHL2!1.65!43.19!GRHL2;;chr17:80797886..80797906,-!p1@ZNF750!1.62!40.22!ZNF750;;chr16:54320646..54320672,-!p2@IRX3!1.61!59.70!IRX3;;chr20:51588873..51588953,+!p1@TSHZ2!1.60!51.23!TSHZ2;;chr2:114036488..114036504,-!p1@PAX8!1.59!37.68!PAX8;;chr10:119302352..119302362,+!p9@EMX2!1.57!36.41!EMX2;;chr12:115122224..115122233,-!p12@TBX3!1.57!35.99!TBX3;;chr4:81118647..81118666,+!p1@PRDM8!1.54!43.61!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!1.54!33.45!IRF8;;chr11:113930425..113930471,+!p1@ZBTB16!1.52!45.73!ZBTB16;;chr19:54058073..54058088,+!p1@ZNF331!1.52!32.18!ZNF331;;chr17:46667594..46667619,-!p1@HOXB3!1.52!31.75!HOXB3;;chr3:169381420..169381535,-!p1@MECOM!1.51!36.41!MECOM;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.33!HIF3A;;chr2:177001290..177001315,+!p1@HOXD3!1.49!30.06!HOXD3;;chr17:46667628..46667642,-!p2@HOXB3!1.48!29.21!HOXB3;;chr12:52437488..52437507,+!p2@NR4A1!1.48!29.21!NR4A1;;chr14:105935396..105935413,+!p4@MTA1!1.47!28.79!MTA1;;chr10:119302150..119302163,+!p8@EMX2!1.44!26.67!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.44!26.25!PAX2;;chr10:119302645..119302712,+!p3@EMX2!1.44!26.25!EMX2;;chr3:128206762..128206781,-!p2@GATA2!1.43!155.81!GATA2;;chr1:201979743..201979762,+!p1@ELF3!1.43!25.83!ELF3;;chrX:66763856..66763896,+!p1@AR!1.42!35.99!AR;;chr12:115122297..115122302,-!p15@TBX3!1.42!25.40!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!1.42!25.40!HOXD8;;chr10:119302268..119302282,+!p4@EMX2!1.41!24.56!EMX2;;chr5:50679228..50679288,+!p1@ISL1!1.41!24.56!ISL1;;chr9:4300050..4300118,-!p1@GLIS3!1.40!153.27!GLIS3;;chr10:8096772..8096787,+!p2@GATA3!1.40!28.37!GATA3;;chr7:97840743..97840786,+!p1@BHLHA15!1.40!24.13!BHLHA15;;chr9:102584262..102584276,+!p1@NR4A3!1.39!52.08!NR4A3;;chr17:45928521..45928539,-!p1@SP6!1.39!23.29!SP6;;chr2:177053386..177053402,+!p1@HOXD1!1.38!22.86!HOXD1;;chr22:41763452..41763466,+!p2@TEF!1.37!22.44!TEF;;chr12:115122262..115122271,-!p7@TBX3!1.37!22.44!TBX3;;chr17:59477233..59477263,+!p1@TBX2!1.36!66.47!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!1.36!22.02!KDM5D;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.14!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.35!24.98!GATA3;;chr14:105935426..105935440,+!p9@MTA1!1.35!21.59!MTA1;;chr7:138666053..138666146,-!p1@KIAA1549!1.34!85.10!KIAA1549;;chr10:119302508..119302559,+!p5@EMX2!1.34!20.75!EMX2;;chr10:119302182..119302196,+!p6@EMX2!1.33!20.32!EMX2;;chr19:20188776..20188826,+!p1@ZNF90!1.32!52.50!ZNF90;;chr14:75745523..75745537,+!p1@FOS!1.30!2201.61!FOS;;chr8:77593474..77593612,+!p1@ZFHX4!1.28!74.52!ZFHX4;;chr1:2985760..2985774,+!p1@PRDM16!1.28!18.21!PRDM16;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.29!SOX18;;chr1:40105299..40105326,-!p1@HEYL!1.27!17.78!HEYL;;chr17:46675539..46675551,-!p7@HOXB6!1.27!17.78!HOXB6;;chr11:113930401..113930422,+!p3@ZBTB16!1.27!17.78!ZBTB16;;chr1:212782094..212782109,+!p1@ATF3!1.26!452.18!ATF3;;chr16:54320675..54320715,-!p1@IRX3!1.25!35.56!IRX3;;chr1:40367668..40367684,-!p2@MYCL1!1.25!16.94!MYCL1;;chr16:54320101..54320125,-!p4@IRX3!1.23!22.86!IRX3;;chr12:115122005..115122016,-!p3@TBX3!1.23!19.05!TBX3;;chr12:52448213..52448262,+!p6@NR4A1!1.23!16.09!NR4A1;;chr6:19837592..19837621,+!p1@ID4!1.22!93.57!ID4;;chr9:4299979..4299996,-!p3@GLIS3!1.22!25.40!GLIS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.67!POU3F3;;chr3:18466787..18466839,-!p1@SATB1!1.21!66.90!SATB1;;chr11:113930291..113930339,+!p2@ZBTB16!1.21!24.56!ZBTB16;;chr17:46675420..46675465,-!p3@HOXB6!1.21!17.36!HOXB6;;chr11:34643148..34643157,+!p16@EHF!1.21!15.24!EHF;;chr3:114819124..114819200,-!p3@ZBTB20!1.20!34.29!ZBTB20;;chr9:4299959..4299974,-!p4@GLIS3!1.20!23.29!GLIS3;;chr11:34663654..34663663,+!p17@EHF!1.20!14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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006947
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0003918,UBERON:0005754,UBERON:0007687,UBERON:0007297,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10201-103F3
 |is_a=EFO:0002091;;FF:0010201
 |is_obsolete=
+|library_id=CNhs12851
+|library_id_phase_based=2:CNhs12851
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10201
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10201
 |name=seminal vesicle, adult
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12851,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 62: / Line 78: @@
 |rna_tube_id=103F3
 |rna_weight_ug=10
-|sample_age=M
+|sample_age=24
 |sample_category=tissues
 |sample_cell_catalog=NA
@@ Line 79: / Line 95: @@
 |sample_id=10201
 |sample_note=
-|sample_sex=24
+|sample_sex=M
 |sample_species=Human (Homo sapiens)
 |sample_strain=
@@ Line 85: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10201-103F3;search_select_hide=table117:FF:10201-103F3
 }}

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FF:10201-103F3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:55, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0