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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005083
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005083
|accession_numbers=CAGE;DRX008353;DRR009225;DRZ000650;DRZ002035;DRZ012000;DRZ013385
|accession_numbers_RNASeq=sRNA-Seq;DRX037160;DRR041526;DRZ007168
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.82!173.17!TWIST1;;chr6:34204921..34204939,+!p3@HMGA1!1.72!1456.00!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.64!110.83!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.59!138.54!SIX1;;chr7:27205136..27205164,-!p1@HOXA9!1.50!30.37!HOXA9;;chr16:86600426..86600441,+!p1@FOXC2!1.44!63.94!FOXC2;;chr5:134369905..134369972,-!p1@PITX1!1.42!38.36!PITX1;;chr11:65686802..65686818,+!p6@DRAP1!1.38!39.16!DRAP1;;chr7:27224842..27224872,-!p1@HOXA11!1.37!22.38!HOXA11;;chr12:66218598..66218645,+!p2@HMGA2!1.36!97.51!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!30.37!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.32!179.30!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.91!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.30!95.91!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.92!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.17!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.28!55.68!TBX2;;chr12:54379029..54379057,+!p2@HOXC10!1.28!17.85!HOXC10;;chr1:170632285..170632309,+!p1@PRRX1!1.25!18.92!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.23!15.99!HOXC10;;chr7:27205106..27205134,-!p2@HOXA9!1.22!15.45!HOXA9;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!1.18!14.12!HOXA11;;chr11:65686732..65686756,+!p2@DRAP1!1.13!53.02!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!1.11!1323.59!HMGA1;;chr7:96654133..96654150,-!p1@DLX5!1.11!11.99!DLX5;;chr11:65687362..65687436,+!p3@DRAP1!1.10!53.28!DRAP1;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.38!HMGA2;;chr12:54380036..54380091,+!p4@HOXC10!1.10!11.72!HOXC10;;chr4:174451370..174451387,-!p1@HAND2!1.08!10.92!HAND2;;chr20:30193083..30193098,+!p1@ID1!1.04!808.32!ID1;;chr12:66218378..66218401,+!p6@HMGA2!1.02!14.65!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.02!12.52!PRRX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.02!10.12!GLIS1;;chr11:65687222..65687240,+!p7@DRAP1!1.01!11.99!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!1.00!35.70!FOSL1;;chr7:27213893..27213954,-!p1@HOXA10!1.00!9.06!HOXA10;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.12!RUNX2;;chr2:85981107..85981120,+!p3@ATOH8!0.99!8.79!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.98!12.26!IRX3;;chr6:134210243..134210257,+!p1@TCF21!0.98!8.53!TCF21;;chr19:47523058..47523114,+!p1@NPAS1!0.98!8.53!NPAS1;;chr11:65686952..65686975,+!p5@DRAP1!0.96!46.36!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.95!20.25!TWIST1;;chr2:200322654..200322707,-!p2@SATB2!0.94!11.46!SATB2;;chr14:61116168..61116180,-!p2@SIX1!0.94!8.79!SIX1;;chr7:96654026..96654061,-!p2@DLX5!0.94!7.73!DLX5;;chr14:75988771..75988826,+!p1@BATF!0.93!10.12!BATF;;chr12:54393880..54393962,+!p1@HOXC9!0.93!7.46!HOXC9;;chr8:49833948..49833973,-!p2@SNAI2!0.92!49.02!SNAI2;;chr17:59477197..59477212,+!p2@TBX2!0.91!12.52!TBX2;;chr16:54320617..54320643,-!p3@IRX3!0.91!9.32!IRX3;;chr7:27192185..27192209,-!p1@HOXA3!0.91!7.19!HOXA3;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.19!SIX2;;chr4:174450089..174450153,-!p2@HAND2!0.91!7.19!HAND2;;chr12:53614115..53614154,-!p1@RARG!0.90!38.63!RARG;;chr16:54320158..54320200,-!p5@IRX3!0.90!10.12!IRX3;;chr12:54380404..54380433,+!p3@HOXC10!0.90!6.93!HOXC10;;chr2:172967242..172967265,-!p2@DLX2!0.90!6.93!DLX2;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.93!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!0.89!188.36!FOSL1;;chr8:49833978..49833996,-!p1@SNAI2!0.89!144.67!SNAI2;;chr1:170633262..170633285,+!p3@PRRX1!0.89!7.73!PRRX1;;chr6:31126291..31126399,+!p1@TCF19!0.88!66.07!TCF19;;chr7:27196217..27196246,-!p2@HOXA7!0.88!6.66!HOXA7;;chr2:176994408..176994492,+!p1@HOXD8!0.88!6.66!HOXD8;;chr5:321810..321877,+!p1@AHRR!0.87!21.31!AHRR;;chr17:59477275..59477286,+!p3@TBX2!0.87!8.79!TBX2;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.39!PRRX2;;chr2:172949484..172949522,+!p1@DLX1!0.87!6.39!DLX1;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.39!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.86!7.73!TBX18;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.93!PRRX1;;chr2:85980919..85980942,+!p4@ATOH8!0.86!6.66!ATOH8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.13!HOXC5;;chr11:65687158..65687216,+!p4@DRAP1!0.84!35.97!DRAP1;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.06!HMGA2;;chr12:66218469..66218477,+!p16@HMGA2!0.84!5.86!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.86!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.84!5.86!HMGA2;;chr4:57522598..57522664,-!p3@HOPX!0.84!5.86!HOPX;;chr11:65687243..65687276,+!p8@DRAP1!0.83!7.99!DRAP1;;chr12:66218443..66218461,+!p8@HMGA2!0.83!7.46!HMGA2;;chr2:172967276..172967296,-!p3@DLX2!0.82!5.59!DLX2;;chr2:19558373..19558392,-!p1@OSR1!0.81!15.99!OSR1;;chr16:54320646..54320672,-!p2@IRX3!0.81!8.53!IRX3;;chr19:38720294..38720348,-!p1@DPF1!0.81!6.93!DPF1;;chr19:46801639..46801699,+!p1@HIF3A!0.80!5.33!HIF3A;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.33!KDM5D;;chr12:2986206..2986258,-!p2@FOXM1!0.79!33.84!FOXM1;;chr2:239756671..239756732,+!p1@TWIST2!0.79!17.85!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.32!TWIST2;;chr15:96873984..96873999,+!p3@NR2F2!0.78!40.23!NR2F2;;chr6:34204973..34204990,+!p4@HMGA1!0.77!70.87!HMGA1;;chr1:23885981..23886002,-!p1@ID3!0.76!926.62!ID3;;chr5:176738887..176738934,-!p1@MXD3!0.76!34.90!MXD3;;chr2:169312600..169312606,+!p2@CERS6!0.76!7.73!CERS6;;chr4:299227..299272,-!p1@ZNF732!0.76!4.80!ZNF732;;chr16:86600458..86600461,+!p3@FOXC2!0.76!4.80!FOXC2;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.80!FOXC2;;chr12:54394309..54394336,+!p2@HOXC9!0.76!4.80!HOXC9;;chr5:72744594..72744609,-!p1@FOXD1!0.75!23.18!FOXD1;;chr17:41622765..41622821,-!p2@ETV4!0.74!7.19!ETV4;;chr11:46299186..46299195,+!p3@CREB3L1!0.74!5.06!CREB3L1;;chr11:65688877..65688891,+!p13@DRAP1!0.74!4.53!DRAP1;;chr2:85981073..85981091,+!p5@ATOH8!0.74!4.53!ATOH8;;chr8:77593474..77593612,+!p1@ZFHX4!0.72!19.98!ZFHX4;;chr16:54964740..54964789,+!p1@IRX5!0.72!6.39!IRX5;;chr2:102091566..102091581,-!p1@RFX8!0.72!4.26!RFX8;;chr12:115122318..115122331,-!p2@TBX3!0.72!4.26!TBX3;;chr2:172967621..172967637,-!p1@DLX2!0.71!12.26!DLX2;;chr16:54320675..54320715,-!p1@IRX3!0.71!9.59!IRX3;;chr2:85981222..85981259,+!p2@ATOH8!0.71!7.19!ATOH8;;chr12:66218152..66218174,+!p10@HMGA2!0.71!4.53!HMGA2;;chr12:2986275..2986363,-!p1@FOXM1!0.70!45.29!FOXM1;;chr5:92918919..92918942,+!p1@NR2F1!0.70!20.25!NR2F1;;chr7:27212501..27212513,-!p5@HOXA10!0.70!4.00!HOXA10;;chr12:54402745..54402788,+!p1@HOXC8!0.70!4.00!HOXC8;;chr15:96873921..96873946,+!p1@NR2F2!0.69!126.28!NR2F2;;chr15:96874012..96874042,+!p2@NR2F2!0.69!39.70!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.69!4.80!DRAP1;;chr19:13134457..13134462,+!p5@NFIX!0.68!7.19!NFIX;;chr11:65686855..65686946,+!p1@DRAP1!0.67!321.84!DRAP1;;chr17:41623692..41623715,-!p1@ETV4!0.67!17.85!ETV4;;chr17:41623009..41623053,-!p4@ETV4!0.67!6.39!ETV4;;chr2:85980951..85981004,+!p1@ATOH8!0.67!6.39!ATOH8;;chr9:77112244..77112262,+!p1@RORB!0.67!4.26!RORB;;chr2:85981008..85981025,+!p7@ATOH8!0.67!3.73!ATOH8;;chr4:109089095..109089144,-!p6@LEF1!0.67!3.73!LEF1;;chr17:59477403..59477414,+!p4@TBX2!0.67!3.73!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.73!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.65!3.46!HMGA2;;chr7:27183263..27183284,-!p2@HOXA5!0.65!3.46!HOXA5;;chr5:72744445..72744466,-!p2@FOXD1!0.64!6.13!FOXD1;;chr19:49865646..49865718,-!p1@TEAD2!0.63!33.04!TEAD2;;chr3:12329397..12329433,+!p2@PPARG!0.63!8.26!PPARG;;chr20:32274179..32274213,-!p1@E2F1!0.62!25.04!E2F1;;chr5:158527104..158527135,-!p4@EBF1!0.62!3.20!EBF1;;chr20:42295713..42295738,+!p2@MYBL2!0.61!21.58!MYBL2;;chr12:7079780..7079791,-!p2@PHB2!0.61!18.92!PHB2;;chr2:113993052..113993097,-!p2@PAX8!0.61!7.73!PAX8;;chr15:96869255..96869291,+!p6@NR2F2!0.61!6.13!NR2F2;;chr7:137686763..137686784,-!p5@CREB3L2!0.61!5.86!CREB3L2;;chr2:71127699..71127744,+!p1@VAX2!0.60!6.93!VAX2;;chr20:50721803..50721857,-!p2@ZFP64!0.60!5.06!ZFP64;;chr11:63684602..63684664,-!p1@RCOR2!0.59!6.39!RCOR2;;chr15:96869114..96869160,+!p11@NR2F2!0.59!4.26!NR2F2;;chr4:57522166..57522260,-!p2@HOPX!0.59!3.46!HOPX;;chr2:172950227..172950249,+!p2@DLX1!0.59!2.93!DLX1;;chr2:214014959..214015006,-!p4@IKZF2!0.59!2.93!IKZF2;;chr4:57522674..57522699,-!p5@HOPX!0.59!2.93!HOPX;;chr11:65668011..65668020,-!p3@FOSL1!0.59!2.93!FOSL1;;chr12:54378984..54378996,+!p7@HOXC10!0.59!2.93!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.59!2.93!HOXC10;;chr1:170633058..170633084,+!p5@PRRX1!0.59!2.93!PRRX1;;chr20:42295745..42295765,+!p1@MYBL2!0.58!56.22!MYBL2;;chr15:96873861..96873872,+!p9@NR2F2!0.58!6.66!NR2F2;;chr7:27135591..27135658,-!p1@HOXA1!0.58!6.13!HOXA1;;chr5:72743793..72743855,-!p4@FOXD1!0.58!3.46!FOXD1;;chr3:52001448..52001478,-!p2@PCBP4!0.57!46.62!PCBP4;;chr19:1592714..1592762,-!p1@MBD3!0.57!25.04!MBD3;;chr20:39946361..39946379,-!p2@ZHX3!0.57!9.59!ZHX3;;chr19:45260775..45260838,+!p5@BCL3!0.57!3.73!BCL3;;chr19:23299814..23299844,+!p1@ZNF730!0.57!3.46!ZNF730;;chr15:67357924..67357952,+!p2@SMAD3!0.56!21.31!SMAD3;;chr17:41622925..41622976,-!p3@ETV4!0.56!4.26!ETV4;;chr16:54319010..54319041,-!p8@IRX3!0.56!2.66!IRX3;;chr16:86601052..86601066,+!p4@FOXC2!0.56!2.66!FOXC2;;chrY:2803415..2803468,+!p1@ZFY!0.56!2.66!ZFY;;chr11:46333934..46333963,+!p5@CREB3L1!0.56!2.66!CREB3L1;;chr1:25291475..25291511,-!p2@RUNX3!0.56!2.66!RUNX3;;chr17:3571887..3571918,-!p2@TAX1BP3!0.55!35.43!TAX1BP3;;chr11:47279504..47279563,+!p1@NR1H3!0.55!6.66!NR1H3;;chr1:247171347..247171366,-!p2@ZNF695!0.55!5.33!ZNF695;;chr2:214015111..214015179,-!p1@IKZF2!0.54!5.06!IKZF2;;chr15:83953397..83953425,-!p1@BNC1!0.54!2.93!BNC1;;chr1:8938709..8938720,-!p3@ENO1!0.53!148.40!ENO1;;chr7:44143925..44143970,+!p1@AEBP1!0.53!69.00!AEBP1;;chr1:8934931..8934947,-!p4@ENO1!0.53!9.59!ENO1;;chr8:145669791..145669834,-!p1@TONSL!0.53!8.26!TONSL;;chr15:57511609..57511651,+!p2@TCF12!0.53!4.53!TCF12;;chr17:41623075..41623101,-!p9@ETV4!0.53!2.93!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.53!2.40!ETV4;;chr11:46299443..46299459,+!p4@CREB3L1!0.53!2.40!CREB3L1;;chr7:27196196..27196210,-!p5@HOXA7!0.53!2.40!HOXA7;;chr2:172967323..172967336,-!p4@DLX2!0.53!2.40!DLX2;;chr2:85981271..85981289,+!p9@ATOH8!0.53!2.40!ATOH8;;chr4: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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg38.nobarcode.ctss.bed.gz
|id=FF:11697-123A5
|id=FF:11697-123A5
|is_a=EFO:0002091;;FF:0000097
|is_a=EFO:0002091;;FF:0000097
|is_obsolete=
|is_obsolete=
|library_id=CNhs12126
|library_id_phase_based=2:CNhs12126
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11697
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTTTCG.11697
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11697
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTTTCG.11697
|name=Mesenchymal Stem Cells - bone marrow, donor3
|name=Mesenchymal Stem Cells - bone marrow, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12126,LSID839,release011,COMPLETED
|profile_hcage=CNhs12126,LSID839,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 85: Line 106:
|top_motifs=GTF2A1,2:1.47009036496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40157186282;HOX{A5,B5}:1.3246201563;HES1:1.13271695483;GZF1:1.10670746952;GFI1:1.09876734073;RXR{A,B,G}:1.08119249382;NR5A1,2:1.05694896832;ESR1:1.03251932829;RXRA_VDR{dimer}:1.00975409673;NR3C1:0.952693973839;GFI1B:0.888687090371;PPARG:0.852634440137;EN1,2:0.811735815227;PBX1:0.799718679969;IKZF1:0.798888195208;POU2F1..3:0.781396406569;ZBTB6:0.742519264136;PAX8:0.734093463209;ZNF238:0.711246695545;LHX3,4:0.689508337418;EBF1:0.671490387074;ZIC1..3:0.653486433891;ZNF423:0.645710858459;NR1H4:0.644779093797;XCPE1{core}:0.626999910307;TLX1..3_NFIC{dimer}:0.569050687092;TFAP4:0.550374039796;NFY{A,B,C}:0.520001547902;ZNF148:0.508462473345;E2F1..5:0.50136127248;LEF1_TCF7_TCF7L1,2:0.478382337823;SPZ1:0.470451952493;SRF:0.43891701439;TFCP2:0.435071789909;TFAP2{A,C}:0.395666072338;NFE2L1:0.393821118153;GLI1..3:0.392918495423;TOPORS:0.385641862986;ATF6:0.375284396222;TEAD1:0.364156450105;AR:0.357522390951;RREB1:0.346983709186;ZNF143:0.34034421915;BACH2:0.31444283396;KLF4:0.299926653076;ALX4:0.293412053537;UFEwm:0.293175978821;bHLH_family:0.292958585714;SOX17:0.284557452441;SOX{8,9,10}:0.280566181923;YY1:0.273275430057;TFDP1:0.268035803715;POU6F1:0.264783848833;TAL1_TCF{3,4,12}:0.260039570407;PAX5:0.257715399494;TP53:0.251297582209;CDC5L:0.250954689288;STAT5{A,B}:0.240582450603;NFE2L2:0.225380717804;HIC1:0.201150866627;ONECUT1,2:0.197238304219;HNF4A_NR2F1,2:0.194515106299;MZF1:0.189128127501;PDX1:0.157377019728;MTF1:0.155640261948;PAX3,7:0.146802392968;ESRRA:0.144390985022;NANOG:0.143273527127;MYB:0.132985223543;TBP:0.121105098202;TBX4,5:0.119525776059;ARID5B:0.115817608743;REST:0.100063759939;SP1:0.0962476801376;FOS_FOS{B,L1}_JUN{B,D}:0.0936925118437;GTF2I:0.092485956303;HOX{A6,A7,B6,B7}:0.0836719763225;HAND1,2:0.0798093020487;AIRE:0.0472406064835;NFE2:0.0470772254337;HOXA9_MEIS1:0.0209416113561;HNF1A:0.015171816638;FOSL2:-0.000729257561905;RUNX1..3:-0.0108214220758;ELK1,4_GABP{A,B1}:-0.0141962472576;NKX2-3_NKX2-5:-0.0141965716972;TFAP2B:-0.0304864317541;POU5F1:-0.0532971247221;RFX1:-0.0533707966432;FOXL1:-0.0660958013864;NR6A1:-0.0865846668755;HOX{A4,D4}:-0.0991083840505;NKX2-2,8:-0.115623451678;NFIX:-0.117404106873;PRRX1,2:-0.130413893135;EGR1..3:-0.130856892879;NRF1:-0.132967120841;HLF:-0.134434606167;FOXD3:-0.144072779716;MAFB:-0.164320242262;CRX:-0.176251160188;MYBL2:-0.176776099969;POU1F1:-0.183227170096;PAX1,9:-0.199548934877;POU3F1..4:-0.202702648917;STAT2,4,6:-0.218782645832;AHR_ARNT_ARNT2:-0.22164654644;MTE{core}:-0.234902393844;DMAP1_NCOR{1,2}_SMARC:-0.243444008815;MEF2{A,B,C,D}:-0.249431069864;PRDM1:-0.269511037876;PATZ1:-0.2769244617;NHLH1,2:-0.286582587906;NANOG{mouse}:-0.293280532822;HSF1,2:-0.303793667259;NFKB1_REL_RELA:-0.31990688852;XBP1:-0.323036746821;TEF:-0.323839645121;HBP1_HMGB_SSRP1_UBTF:-0.336511388745;OCT4_SOX2{dimer}:-0.340061161089;JUN:-0.358052706926;MED-1{core}:-0.36238404283;NFATC1..3:-0.366110727939;HMX1:-0.374294965889;BREu{core}:-0.391434403631;GATA6:-0.417063749108;CUX2:-0.422112457958;SOX5:-0.423394959728;MAZ:-0.425152013681;ETS1,2:-0.458086096294;FOX{I1,J2}:-0.474558089346;SPIB:-0.478917715657;EVI1:-0.487394742679;ZFP161:-0.495077897812;LMO2:-0.495511288787;SPI1:-0.51095237173;CEBPA,B_DDIT3:-0.512751162925;PAX4:-0.524250747194;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548428456624;SMAD1..7,9:-0.562622556135;MYOD1:-0.564130624468;ELF1,2,4:-0.58207920792;GATA4:-0.586059047207;SOX2:-0.590608995495;CREB1:-0.594370485372;RFX2..5_RFXANK_RFXAP:-0.606171534148;SNAI1..3:-0.63394630443;NFIL3:-0.644891787577;NKX6-1,2:-0.653803103074;PITX1..3:-0.674558008402;NKX3-1:-0.682598805896;FOXM1:-0.701492791979;T:-0.70297640379;RORA:-0.708211284746;MYFfamily:-0.714813744028;ADNP_IRX_SIX_ZHX:-0.730206029896;VSX1,2:-0.738059676682;FOXA2:-0.785527629654;GCM1,2:-0.826455387851;ZEB1:-0.834005086635;ALX1:-0.837273920814;NKX3-2:-0.849834313293;ATF5_CREB3:-0.864291678885;FOXQ1:-0.872122390963;PAX2:-0.881066203508;ZNF384:-0.90417039246;FOXP3:-0.915583029024;ZBTB16:-0.920749470644;TGIF1:-0.932967060494;ATF2:-0.939017536987;PAX6:-0.949597990205;FOXP1:-0.989754670914;FOX{F1,F2,J1}:-1.01848912514;DBP:-1.03809536984;IRF1,2:-1.03836776701;EP300:-1.04577367661;STAT1,3:-1.04650803446;HIF1A:-1.05465593001;NKX2-1,4:-1.1090779406;SREBF1,2:-1.11857241432;ATF4:-1.12619886271;RBPJ:-1.13715208168;FOX{D1,D2}:-1.15860506634;TLX2:-1.19811215038;FOXO1,3,4:-1.21243257987;CDX1,2,4:-1.29421394513;IRF7:-1.31832138559;HMGA1,2:-1.410798629;BPTF:-1.42899775029;IKZF2:-1.43874904793;FOXN1:-1.46651772449
|top_motifs=GTF2A1,2:1.47009036496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40157186282;HOX{A5,B5}:1.3246201563;HES1:1.13271695483;GZF1:1.10670746952;GFI1:1.09876734073;RXR{A,B,G}:1.08119249382;NR5A1,2:1.05694896832;ESR1:1.03251932829;RXRA_VDR{dimer}:1.00975409673;NR3C1:0.952693973839;GFI1B:0.888687090371;PPARG:0.852634440137;EN1,2:0.811735815227;PBX1:0.799718679969;IKZF1:0.798888195208;POU2F1..3:0.781396406569;ZBTB6:0.742519264136;PAX8:0.734093463209;ZNF238:0.711246695545;LHX3,4:0.689508337418;EBF1:0.671490387074;ZIC1..3:0.653486433891;ZNF423:0.645710858459;NR1H4:0.644779093797;XCPE1{core}:0.626999910307;TLX1..3_NFIC{dimer}:0.569050687092;TFAP4:0.550374039796;NFY{A,B,C}:0.520001547902;ZNF148:0.508462473345;E2F1..5:0.50136127248;LEF1_TCF7_TCF7L1,2:0.478382337823;SPZ1:0.470451952493;SRF:0.43891701439;TFCP2:0.435071789909;TFAP2{A,C}:0.395666072338;NFE2L1:0.393821118153;GLI1..3:0.392918495423;TOPORS:0.385641862986;ATF6:0.375284396222;TEAD1:0.364156450105;AR:0.357522390951;RREB1:0.346983709186;ZNF143:0.34034421915;BACH2:0.31444283396;KLF4:0.299926653076;ALX4:0.293412053537;UFEwm:0.293175978821;bHLH_family:0.292958585714;SOX17:0.284557452441;SOX{8,9,10}:0.280566181923;YY1:0.273275430057;TFDP1:0.268035803715;POU6F1:0.264783848833;TAL1_TCF{3,4,12}:0.260039570407;PAX5:0.257715399494;TP53:0.251297582209;CDC5L:0.250954689288;STAT5{A,B}:0.240582450603;NFE2L2:0.225380717804;HIC1:0.201150866627;ONECUT1,2:0.197238304219;HNF4A_NR2F1,2:0.194515106299;MZF1:0.189128127501;PDX1:0.157377019728;MTF1:0.155640261948;PAX3,7:0.146802392968;ESRRA:0.144390985022;NANOG:0.143273527127;MYB:0.132985223543;TBP:0.121105098202;TBX4,5:0.119525776059;ARID5B:0.115817608743;REST:0.100063759939;SP1:0.0962476801376;FOS_FOS{B,L1}_JUN{B,D}:0.0936925118437;GTF2I:0.092485956303;HOX{A6,A7,B6,B7}:0.0836719763225;HAND1,2:0.0798093020487;AIRE:0.0472406064835;NFE2:0.0470772254337;HOXA9_MEIS1:0.0209416113561;HNF1A:0.015171816638;FOSL2:-0.000729257561905;RUNX1..3:-0.0108214220758;ELK1,4_GABP{A,B1}:-0.0141962472576;NKX2-3_NKX2-5:-0.0141965716972;TFAP2B:-0.0304864317541;POU5F1:-0.0532971247221;RFX1:-0.0533707966432;FOXL1:-0.0660958013864;NR6A1:-0.0865846668755;HOX{A4,D4}:-0.0991083840505;NKX2-2,8:-0.115623451678;NFIX:-0.117404106873;PRRX1,2:-0.130413893135;EGR1..3:-0.130856892879;NRF1:-0.132967120841;HLF:-0.134434606167;FOXD3:-0.144072779716;MAFB:-0.164320242262;CRX:-0.176251160188;MYBL2:-0.176776099969;POU1F1:-0.183227170096;PAX1,9:-0.199548934877;POU3F1..4:-0.202702648917;STAT2,4,6:-0.218782645832;AHR_ARNT_ARNT2:-0.22164654644;MTE{core}:-0.234902393844;DMAP1_NCOR{1,2}_SMARC:-0.243444008815;MEF2{A,B,C,D}:-0.249431069864;PRDM1:-0.269511037876;PATZ1:-0.2769244617;NHLH1,2:-0.286582587906;NANOG{mouse}:-0.293280532822;HSF1,2:-0.303793667259;NFKB1_REL_RELA:-0.31990688852;XBP1:-0.323036746821;TEF:-0.323839645121;HBP1_HMGB_SSRP1_UBTF:-0.336511388745;OCT4_SOX2{dimer}:-0.340061161089;JUN:-0.358052706926;MED-1{core}:-0.36238404283;NFATC1..3:-0.366110727939;HMX1:-0.374294965889;BREu{core}:-0.391434403631;GATA6:-0.417063749108;CUX2:-0.422112457958;SOX5:-0.423394959728;MAZ:-0.425152013681;ETS1,2:-0.458086096294;FOX{I1,J2}:-0.474558089346;SPIB:-0.478917715657;EVI1:-0.487394742679;ZFP161:-0.495077897812;LMO2:-0.495511288787;SPI1:-0.51095237173;CEBPA,B_DDIT3:-0.512751162925;PAX4:-0.524250747194;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548428456624;SMAD1..7,9:-0.562622556135;MYOD1:-0.564130624468;ELF1,2,4:-0.58207920792;GATA4:-0.586059047207;SOX2:-0.590608995495;CREB1:-0.594370485372;RFX2..5_RFXANK_RFXAP:-0.606171534148;SNAI1..3:-0.63394630443;NFIL3:-0.644891787577;NKX6-1,2:-0.653803103074;PITX1..3:-0.674558008402;NKX3-1:-0.682598805896;FOXM1:-0.701492791979;T:-0.70297640379;RORA:-0.708211284746;MYFfamily:-0.714813744028;ADNP_IRX_SIX_ZHX:-0.730206029896;VSX1,2:-0.738059676682;FOXA2:-0.785527629654;GCM1,2:-0.826455387851;ZEB1:-0.834005086635;ALX1:-0.837273920814;NKX3-2:-0.849834313293;ATF5_CREB3:-0.864291678885;FOXQ1:-0.872122390963;PAX2:-0.881066203508;ZNF384:-0.90417039246;FOXP3:-0.915583029024;ZBTB16:-0.920749470644;TGIF1:-0.932967060494;ATF2:-0.939017536987;PAX6:-0.949597990205;FOXP1:-0.989754670914;FOX{F1,F2,J1}:-1.01848912514;DBP:-1.03809536984;IRF1,2:-1.03836776701;EP300:-1.04577367661;STAT1,3:-1.04650803446;HIF1A:-1.05465593001;NKX2-1,4:-1.1090779406;SREBF1,2:-1.11857241432;ATF4:-1.12619886271;RBPJ:-1.13715208168;FOX{D1,D2}:-1.15860506634;TLX2:-1.19811215038;FOXO1,3,4:-1.21243257987;CDX1,2,4:-1.29421394513;IRF7:-1.31832138559;HMGA1,2:-1.410798629;BPTF:-1.42899775029;IKZF2:-1.43874904793;FOXN1:-1.46651772449
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11697-123A5;search_select_hide=table117:FF:11697-123A5
}}
}}

Latest revision as of 18:15, 4 June 2020

Name:Mesenchymal Stem Cells - bone marrow, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12126
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7505
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005083
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12126 CAGE DRX008353 DRR009225
Accession ID Hg19

Library idBAMCTSS
CNhs12126 DRZ000650 DRZ002035
Accession ID Hg38

Library idBAMCTSS
CNhs12126 DRZ012000 DRZ013385
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005083
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.GTTTCG sRNA-Seq DRX037160 DRR041526
Accession ID Hg19

Library idBAMCTSS
SRhi10010.GTTTCG DRZ007168


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.134
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.103
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0775
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.389
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.17
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.353
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.163
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.221
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.742
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.67
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.185
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.103
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.535
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.315
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.531
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12126

Jaspar motifP-value
MA0002.20.719
MA0003.10.385
MA0004.10.448
MA0006.10.24
MA0007.10.0102
MA0009.10.155
MA0014.10.827
MA0017.10.213
MA0018.20.0137
MA0019.10.415
MA0024.10.0271
MA0025.10.125
MA0027.10.269
MA0028.10.63
MA0029.10.333
MA0030.10.0044
MA0031.14.53828e-4
MA0035.20.75
MA0038.10.0146
MA0039.20.541
MA0040.10.846
MA0041.10.459
MA0042.10.774
MA0043.18.39802e-5
MA0046.10.105
MA0047.20.29
MA0048.10.0464
MA0050.14.61253e-11
MA0051.11.0638e-7
MA0052.10.363
MA0055.10.00164
MA0057.10.154
MA0058.10.459
MA0059.10.206
MA0060.11.71537e-6
MA0061.10.806
MA0062.20.13
MA0065.20.139
MA0066.10.187
MA0067.10.0233
MA0068.10.759
MA0069.10.283
MA0070.10.03
MA0071.10.192
MA0072.10.753
MA0073.10.938
MA0074.10.145
MA0076.10.657
MA0077.10.363
MA0078.10.57
MA0079.20.692
MA0080.24.30099e-6
MA0081.10.00666
MA0083.10.00289
MA0084.10.972
MA0087.10.567
MA0088.10.0486
MA0090.10.211
MA0091.10.215
MA0092.10.936
MA0093.10.49
MA0099.20.00126
MA0100.10.997
MA0101.10.0776
MA0102.21.83726e-6
MA0103.10.183
MA0104.20.917
MA0105.10.548
MA0106.10.0891
MA0107.10.0665
MA0108.20.00848
MA0111.10.515
MA0112.20.0227
MA0113.10.0985
MA0114.10.237
MA0115.10.815
MA0116.10.225
MA0117.10.168
MA0119.10.352
MA0122.10.836
MA0124.10.765
MA0125.10.944
MA0131.10.634
MA0135.10.0378
MA0136.11.20912e-5
MA0137.20.0331
MA0138.20.124
MA0139.10.686
MA0140.10.94
MA0141.10.0403
MA0142.10.516
MA0143.10.911
MA0144.10.362
MA0145.10.398
MA0146.10.0389
MA0147.10.645
MA0148.10.396
MA0149.10.43
MA0150.10.546
MA0152.10.789
MA0153.10.945
MA0154.10.42
MA0155.10.18
MA0156.10.00258
MA0157.10.0492
MA0159.10.541
MA0160.10.459
MA0162.10.165
MA0163.10.0379
MA0164.10.616
MA0258.10.255
MA0259.10.831



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12126

Novel motifP-value
10.76
100.883
1000.558
1010.0588
1020.608
1030.65
1040.228
1050.539
1060.628
1070.202
1080.877
1090.00678
110.0594
1100.0421
1110.761
1120.782
1130.448
1140.964
1150.298
1160.0342
1170.211
1180.727
1190.66
120.6
1200.167
1210.541
1220.767
1230.00202
1240.251
1250.586
1260.649
1270.453
1280.929
1290.535
130.587
1300.0381
1310.629
1320.217
1330.472
1340.276
1350.544
1360.718
1370.0126
1380.0743
1390.3
140.973
1400.541
1410.209
1420.104
1430.285
1440.764
1450.441
1460.147
1470.266
1480.174
1490.472
150.784
1500.338
1510.705
1520.146
1530.102
1540.372
1550.826
1560.959
1570.632
1580.053
1590.752
160.224
1600.017
1610.524
1620.317
1630.45
1640.677
1650.191
1660.964
1670.447
1680.277
1690.0773
170.336
180.551
190.0514
20.45
200.968
210.72
220.0797
230.876
240.451
250.846
260.0207
270.372
280.0445
290.353
30.48
300.349
310.564
323.92818e-6
330.42
340.303
350.524
360.777
370.158
380.457
390.624
40.581
400.0718
410.318
420.705
430.298
440.991
450.401
460.117
470.187
480.181
490.479
50.361
500.192
510.527
520.563
530.242
540.788
550.765
560.2
570.399
580.351
590.012
60.546
600.836
610.639
620.49
630.237
640.325
650.123
660.0515
670.757
680.0434
690.0475
70.922
700.766
710.165
720.491
730.0263
740.413
750.336
760.483
770.082
780.425
790.253
80.0292
800.461
810.918
820.774
830.394
840.499
850.473
860.909
870.0686
880.415
890.257
90.385
900.091
910.485
920.858
930.888
940.98
950.0457
960.979
970.691
980.391
993.35404e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12126


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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