MCL coexpression mm9:1640: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.0129027425573152,0,0,0,0,0.0134795900873983,0.0182357621726277,0.474301522955217,0.463928986831227,0.366988919141422,0.17366777163821,0.102748299826893,0.723381691889024,0.49944968706145,0.0942928072244148,0.0455474372978447,0,0.368388995586818,0.325137683837497,0.1635036291696,0.0136435996921853,0.0239560738032615,0,0.0257820609494711,0.0179392974753741,0,0,0.0169489369166406,0.0151111016634793,0.0195229560354304,0.0347901679133582,0.0427051809025396,0,0,0.0667058367965384,0.0133571877744951,0.0297414234739694,0.0528248224027988,0,0.0365698454099916,0.247636945842925,0.0904383412446452,0.112439588479038,0,0,0,0,0,0,0,0,0,0.761348885621305,0.615631189380511,0.556554168834056,0,0.0218842157994612,0.0361210508241096,0,0,0,0,0,0.0322705967929012,0.119442241062834,0,0.0227619479210974,0.0282409176368606,0,0.01099962675128,0,0,0.0173337806165056,0.0271837137767416,0.00794986341805778,0,0,0.0104377408218896,0,0.0107605597358441,0.0076037647116125,0,0,0,0.0123506615380358,0.0224290384069862,0,0,0.00634034871648942,0,0.19902757925366,0,0,0,0,0,0.0114148249337983,0,0,0,0,0,0,0,0.0170217829733477,0,0,0,0.106176482429313,0.0120218238822,0,0,0,0.012194131590756,0.00965640094523602,0,0.0191868699727828,0.0337946722277335,0,0,0.017331858075575,0,0,0,0.0165173472643813,0,0.129251244890703,0.157899408849073,0.0757732066519843,0,0,0.027784457674693,0,0,0.0420831893022544,0.013059258027902,0.0245257738317683,0.0101847058588194,0.0551040020218319,0,0.0106249462058222,0.0179741089226215,0,0,0.0110812475675142,0,0,0,0,0,0,0.0315754194749792,0,0,0.0325075382118249,0,0,0.0397821852937614,0.0217240643049498,0,0,0.0143809696377157,0.0184560140783317,0,0.0124612644033474,0,0,0.0095923855235379,0,0.013203091508521,0.0067706674964915,0,0.0316182085542166,0.0218768402956055,0.0304931329206434,0.0233689388535646,0,0,0.0308590131869708,0,0,0,0,0,0,0,0.035372747346478,0,0.0154709706802017,0,0,0.0157740702445469,0.0150851487637871,0.0178748218364249,0,0.0161001398555976,0.015397408914535,0.0273666324770968,0,0.0119588759859071,0.0335223091917924,0,0,0,0.0155868231842077,0.0176174402379168,0,0,0,0.0219626785989536,0.0130513331539335,0,0,0,0,0,0.0143320342026203,0.0341956312905688,0.0294511547164211,0.0150722621482758,0,0,0,0,0,0,0.0127143405710055,0.0173761833634312,0,0.0263607917302479,0.013836272668391,0,0,0.0639382515772648,0,0,0,0.00962709399798114,0.024631104690724,0.0195535307320076,0,0,0.0169455185115956,0,0,0,0,0,0,0.0242016882738972,0.0115286636285435,0,0.0131075000712303,0.0265259150050564,0,0,0.0229437792653656,0,0,0,0.0199656947883834,0.0474618602731606,0,0,0,0,0,0.0143808984296719,0,0.0168678480793083,0,0,0.0247114035901336,0.0230864828259024,0,0,0,0.0349084102945358,0.013001182555833,0.0187719712413212,0.00979491454394344,0.0132011095126881,0.0222175932737362,0.0147748385381288,0.027403602145496,0,0,0,0.0111287309194428,0.0178946976761341,0.106118587206519,0.135131977978987,0.108245338185297,0,0.0127543120142581,0.0160761885421867,0,0,0.0171553092198588,0.0109887904313896,0,0,0,0.0419747826588222,0.0388302949969878,0.0121030453696687,0,0,0,0,0.00963840937126184,0,0.0165368780164291,0,0,0.0663971264461426,0,0.0162278165181211,0.010609602440298,0.0286094554221995,0,0.0197175216546808,0.0119648837323888,0.0396918073927447,0.0453643661880774,0.046384771445133,0.0384327630024924,0.0628462828839488,0.0989742705143787,0.0324806627004372,0,0,0,0,0,0.0417175010388205,0.0168700900221607,0,0,0,0,0.0137746407507338,0.0453242346917408,0,0.0448041290400514,0,0.0324616355100336,0,0.00857708231151888,0,0,0,0.0165293008076163,0,0,0,0,0.0195692221555471,0.0196234332723016,0,0,0.00539037886652954,0,0,0,0.015321479085828,0,0.0119277459039547,0,0,0,0.0221645797173144,0.00781214830007184,0,0,0,0,0,0.0184928990937919,0.00816036667406438,0,0.012511647014566,0.0153212890822472,0,0,0,0.0304067552635962,0.0173140624994805,0|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.448354805350486,0.530636114757998,0.42134914571647,0.0686377264886741,0.120273978885459,0.662305866932639,0.503178981008659,0.124865908594952,0,0,0.436963985481971,0.292211982742496,0.153628809860867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200913802025349,0,0,0,0,0,0,0,0,0,0,0,0.701290098400599,0.591225886078848,0.781138093520243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27174718160524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100004302423367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0932921651944173,0,0.0983461768813133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0681778550615498,0.056886356216389,0.0562185712770556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0417740847988257,0,0,0.0403878614760544,0.0398944891531444,0.0480053095083702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=|ontology_enrichment_celltype=CL:0000791!8.24e-32!9;CL:0000789!8.24e-32!9;CL:0002420!8.24e-32!9;CL:0002419!8.24e-32!9;CL:0000790!8.24e-32!9;CL:0000838!3.21e-29!12;CL:0000624!3.45e-28!8;CL:0000542!7.75e-27!13;CL:0000051!7.75e-27!13;CL:0002031!4.62e-26!25;CL:0000988!6.25e-26!32;CL:0002032!6.25e-26!32;CL:0000037!6.25e-26!32;CL:0000566!6.25e-26!32;CL:0000837!6.25e-26!32;CL:0000084!9.25e-26!11;CL:0000827!9.25e-26!11;CL:0002242!1.80e-21!16;CL:0000893!2.64e-21!6;CL:0002489!2.64e-21!6;CL:0000898!2.64e-21!6;CL:0000809!2.64e-21!6;CL:0000810!2.64e-21!6;CL:0000895!2.64e-21!6;CL:0000808!2.64e-21!6;CL:0000894!2.64e-21!6;CL:0000806!2.64e-21!6;CL:0000807!2.64e-21!6;CL:0000805!2.64e-21!6;CL:0002425!2.64e-21!6;CL:0002436!2.64e-21!6;CL:0002427!2.64e-21!6;CL:0002428!2.64e-21!6;CL:0002429!2.64e-21!6;CL:0002433!2.64e-21!6;CL:0002431!2.64e-21!6;CL:0002432!2.64e-21!6;CL:0000738!4.21e-20!17;CL:0002087!4.21e-20!17;CL:0002320!1.73e-19!46;CL:0000134!1.73e-19!46;CL:0000219!4.20e-16!54;CL:0000034!6.11e-11!97;CL:0000553!1.06e-09!6;CL:0000556!1.06e-09!6;CL:0000723!3.53e-08!91;CL:0000048!3.53e-08!91|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002384!1.73e-19!46;UBERON:0002193!2.61e-13!48;UBERON:0002405!2.61e-13!48;UBERON:0002370!3.52e-13!23;UBERON:0000974!3.52e-13!23;UBERON:0004807!3.52e-13!23;UBERON:0005058!3.52e-13!23;UBERON:0003351!3.52e-13!23;UBERON:0009113!3.52e-13!23;UBERON:0003295!3.52e-13!23;UBERON:0009722!3.52e-13!23;UBERON:0005562!3.52e-13!23;UBERON:0007690!3.52e-13!23;UBERON:0006562!1.47e-12!24;UBERON:0003408!1.47e-12!24;UBERON:0001557!1.47e-12!24;UBERON:0001042!1.47e-12!24;UBERON:0008814!1.47e-12!24;UBERON:0009145!1.47e-12!24;UBERON:0002390!2.17e-12!45;UBERON:0003061!2.17e-12!45;UBERON:0000072!5.63e-11!27;UBERON:0004177!4.21e-10!29;UBERON:0005057!4.21e-10!29;UBERON:0000077!6.54e-10!35;UBERON:0000063!4.42e-08!35;UBERON:0007811!8.24e-08!36|tfbs_overrepresentation_for_novel_motifs=0.557864,0.612204,0.529553,0.603273,0.406364,0.618805,0.715644,0.300268,0.310789,0.115752,0.668936,0.702872,0.300533,0.728641,0.424775,0,0.930881,0.397593,0.775038,0.185796,0.489529,0.44579,0.727684,1.04384,0.537749,0.757752,0.274609,0.641282,0.456327,0.227599,0.626183,1.03545,0.395107,0.253145,0.425309,0.20704,0.384813,0.699032,0.360612,0.328675,0.401916,0.631725,0.419293,0.426986,0.4934,0.591277,0.847828,0.658142,0.370501,0.459555,0.912738,0.786094,0.627649,1.18062,1.19842,0.73621,0.469329,0.689304,0.26467,0.734051,1.01481,0.796017,0.323911,0.901018,0.747985,0.943088,1.33705,1.68977,1.00999,1.54147,0.509047,0.827208,2.08316,1.23259,0.257421,0.245132,0.253065,0.835925,0.997094,0.494135,0.308173,0.948899,0.794502,0.796301,1.1148,0.0793594,0.618102,0.645625,0.852952,1.85284,1.40768,1.11989,1.04863,0.412897,0.356133,0.3366,0.297538,1.05152,0.848095,0.20438,0.384901,1.03517,1.16282,0.913356,0.91226,0.631253,0.97421,0.653843,0.499439,0.491483,0.550229,1.16464,0.495367,0.674448,1.41481,0.399936,0.328405,0.607321,0.932233,0.380707,1.23809,0.879184,0.759676,0.834976,1.46955,1.00091,0.724289,1.04166,1.33551,0.416189,1.14546,0.595426,1.3055,0.750642,1.43666,0.44142,0.566955,0.633235,1.3869,2.2222,1.82084,1.34183,0.772375,1.04623,0.905521,0.632211,0.851091,2.18247,0.569503,0.408309,0.230371,2.6072,1.18223,0.343194,0.749664,1.26545,0.787153,1.11626,0.555203,0.566652,1.39653,1.11392,1.00137,0.547782,0.90208,0.741834,0.383572,0.701187,0.745913|tfbs_overrepresentation_jaspar=MA0003.1;0.406907,MA0004.1;0.603793,MA0006.1;1.07705,MA0007.1;0.587678,MA0009.1;1.06266,MA0014.1;0.418772,MA0017.1;0.449113,MA0019.1;0.874061,MA0024.1;1.01759,MA0025.1;1.30092,MA0027.1;2.72141,MA0028.1;0.43138,MA0029.1;0.995171,MA0030.1;1.00195,MA0031.1;0.965177,MA0038.1;0.757669,MA0040.1;1.07552,MA0041.1;0.522007,MA0042.1;0.507715,MA0043.1;1.1618,MA0046.1;1.09955,MA0048.1;0.205696,MA0050.1;0.645342,MA0051.1;0.767098,MA0052.1;1.08379,MA0055.1;0.0851423,MA0056.1;0,MA0057.1;2.39011,MA0058.1;0.50032,MA0059.1;0.513699,MA0060.1;0.330907,MA0061.1;0.364227,MA0063.1;0,MA0066.1;0.746072,MA0067.1;1.41352,MA0068.1;0.197245,MA0069.1;1.08414,MA0070.1;1.07418,MA0071.1;0.644448,MA0072.1;1.06547,MA0073.1;11.9602,MA0074.1;0.708108,MA0076.1;0.470037,MA0077.1;1.04318,MA0078.1;0.801834,MA0081.1;1.33193,MA0083.1;1.16099,MA0084.1;1.74401,MA0087.1;1.11687,MA0088.1;0.148348,MA0089.1;0,MA0090.1;1.39153,MA0091.1;0.617887,MA0092.1;0.567278,MA0093.1;0.440484,MA0095.1;0,MA0098.1;0,MA0100.1;0.695835,MA0101.1;0.523409,MA0103.1;0.460936,MA0105.1;0.248108,MA0106.1;0.809991,MA0107.1;0.454197,MA0108.2;0.897859,MA0109.1;0,MA0111.1;0.582193,MA0113.1;0.780358,MA0114.1;0.361633,MA0115.1;1.16466,MA0116.1;0.419688,MA0117.1;1.13165,MA0119.1;0.524046,MA0122.1;1.15196,MA0124.1;1.35963,MA0125.1;1.28445,MA0130.1;0,MA0131.1;0.869325,MA0132.1;0,MA0133.1;0,MA0135.1;1.19898,MA0136.1;1.73051,MA0139.1;0.295945,MA0140.1;0.695713,MA0141.1;0.482463,MA0142.1;0.950155,MA0143.1;0.797553,MA0144.1;0.365053,MA0145.1;1.48363,MA0146.1;0.21827,MA0147.1;0.378658,MA0148.1;0.621195,MA0149.1;0.529387,MA0062.2;0.254018,MA0035.2;1.67146,MA0039.2;0.489701,MA0138.2;0.861035,MA0002.2;0.809945,MA0137.2;0.479301,MA0104.2;0.315156,MA0047.2;0.75686,MA0112.2;2.12679,MA0065.2;0.158101,MA0150.1;0.587557,MA0151.1;0,MA0152.1;0.756973,MA0153.1;1.21594,MA0154.1;0.203217,MA0155.1;0.173445,MA0156.1;2.05819,MA0157.1;0.91689,MA0158.1;0,MA0159.1;0.389847,MA0160.1;0.624415,MA0161.1;0,MA0162.1;1.87338,MA0163.1;0.230013,MA0164.1;0.729558,MA0080.2;2.98824,MA0018.2;0.739807,MA0099.2;0.854449,MA0079.2;3.38617,MA0102.2;1.79669,MA0258.1;0.346619,MA0259.1;0.960816,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=0.0129027425573152,0,0,0,0,0.0134795900873983,0.0182357621726277,0.474301522955217,0.463928986831227,0.366988919141422,0.17366777163821,0.102748299826893,0.723381691889024,0.49944968706145,0.0942928072244148,0.0455474372978447,0,0.368388995586818,0.325137683837497,0.1635036291696,0.0136435996921853,0.0239560738032615,0,0.0257820609494711,0.0179392974753741,0,0,0.0169489369166406,0.0151111016634793,0.0195229560354304,0.0347901679133582,0.0427051809025396,0,0,0.0667058367965384,0.0133571877744951,0.0297414234739694,0.0528248224027988,0,0.0365698454099916,0.247636945842925,0.0904383412446452,0.112439588479038,0,0,0,0,0,0,0,0,0,0.761348885621305,0.615631189380511,0.556554168834056,0,0.0218842157994612,0.0361210508241096,0,0,0,0,0,0.0322705967929012,0.119442241062834,0,0.0227619479210974,0.0282409176368606,0,0.01099962675128,0,0,0.0173337806165056,0.0271837137767416,0.00794986341805778,0,0,0.0104377408218896,0,0.0107605597358441,0.0076037647116125,0,0,0,0.0123506615380358,0.0224290384069862,0,0,0.00634034871648942,0,0.19902757925366,0,0,0,0,0,0.0114148249337983,0,0,0,0,0,0,0,0.0170217829733477,0,0,0,0.106176482429313,0.0120218238822,0,0,0,0.012194131590756,0.00965640094523602,0,0.0191868699727828,0.0337946722277335,0,0,0.017331858075575,0,0,0,0.0165173472643813,0,0.129251244890703,0.157899408849073,0.0757732066519843,0,0,0.027784457674693,0,0,0.0420831893022544,0.013059258027902,0.0245257738317683,0.0101847058588194,0.0551040020218319,0,0.0106249462058222,0.0179741089226215,0,0,0.0110812475675142,0,0,0,0,0,0,0.0315754194749792,0,0,0.0325075382118249,0,0,0.0397821852937614,0.0217240643049498,0,0,0.0143809696377157,0.0184560140783317,0,0.0124612644033474,0,0,0.0095923855235379,0,0.013203091508521,0.0067706674964915,0,0.0316182085542166,0.0218768402956055,0.0304931329206434,0.0233689388535646,0,0,0.0308590131869708,0,0,0,0,0,0,0,0.035372747346478,0,0.0154709706802017,0,0,0.0157740702445469,0.0150851487637871,0.0178748218364249,0,0.0161001398555976,0.015397408914535,0.0273666324770968,0,0.0119588759859071,0.0335223091917924,0,0,0,0.0155868231842077,0.0176174402379168,0,0,0,0.0219626785989536,0.0130513331539335,0,0,0,0,0,0.0143320342026203,0.0341956312905688,0.0294511547164211,0.0150722621482758,0,0,0,0,0,0,0.0127143405710055,0.0173761833634312,0,0.0263607917302479,0.013836272668391,0,0,0.0639382515772648,0,0,0,0.00962709399798114,0.024631104690724,0.0195535307320076,0,0,0.0169455185115956,0,0,0,0,0,0,0.0242016882738972,0.0115286636285435,0,0.0131075000712303,0.0265259150050564,0,0,0.0229437792653656,0,0,0,0.0199656947883834,0.0474618602731606,0,0,0,0,0,0.0143808984296719,0,0.0168678480793083,0,0,0.0247114035901336,0.0230864828259024,0,0,0,0.0349084102945358,0.013001182555833,0.0187719712413212,0.00979491454394344,0.0132011095126881,0.0222175932737362,0.0147748385381288,0.027403602145496,0,0,0,0.0111287309194428,0.0178946976761341,0.106118587206519,0.135131977978987,0.108245338185297,0,0.0127543120142581,0.0160761885421867,0,0,0.0171553092198588,0.0109887904313896,0,0,0,0.0419747826588222,0.0388302949969878,0.0121030453696687,0,0,0,0,0.00963840937126184,0,0.0165368780164291,0,0,0.0663971264461426,0,0.0162278165181211,0.010609602440298,0.0286094554221995,0,0.0197175216546808,0.0119648837323888,0.0396918073927447,0.0453643661880774,0.046384771445133,0.0384327630024924,0.0628462828839488,0.0989742705143787,0.0324806627004372,0,0,0,0,0,0.0417175010388205,0.0168700900221607,0,0,0,0,0.0137746407507338,0.0453242346917408,0,0.0448041290400514,0,0.0324616355100336,0,0.00857708231151888,0,0,0,0.0165293008076163,0,0,0,0,0.0195692221555471,0.0196234332723016,0,0,0.00539037886652954,0,0,0,0.015321479085828,0,0.0119277459039547,0,0,0,0.0221645797173144,0.00781214830007184,0,0,0,0,0,0.0184928990937919,0.00816036667406438,0,0.012511647014566,0.0153212890822472,0,0,0,0.0304067552635962,0.0173140624994805,0 | |||
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.448354805350486,0.530636114757998,0.42134914571647,0.0686377264886741,0.120273978885459,0.662305866932639,0.503178981008659,0.124865908594952,0,0,0.436963985481971,0.292211982742496,0.153628809860867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200913802025349,0,0,0,0,0,0,0,0,0,0,0,0.701290098400599,0.591225886078848,0.781138093520243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27174718160524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100004302423367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0932921651944173,0,0.0983461768813133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0681778550615498,0.056886356216389,0.0562185712770556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0417740847988257,0,0,0.0403878614760544,0.0398944891531444,0.0480053095083702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|gostat_on_MCL_coexpression= | |||
|ontology_enrichment_celltype=CL:0000791!8.24e-32!9;CL:0000789!8.24e-32!9;CL:0002420!8.24e-32!9;CL:0002419!8.24e-32!9;CL:0000790!8.24e-32!9;CL:0000838!3.21e-29!12;CL:0000624!3.45e-28!8;CL:0000542!7.75e-27!13;CL:0000051!7.75e-27!13;CL:0002031!4.62e-26!25;CL:0000988!6.25e-26!32;CL:0002032!6.25e-26!32;CL:0000037!6.25e-26!32;CL:0000566!6.25e-26!32;CL:0000837!6.25e-26!32;CL:0000084!9.25e-26!11;CL:0000827!9.25e-26!11;CL:0002242!1.80e-21!16;CL:0000893!2.64e-21!6;CL:0002489!2.64e-21!6;CL:0000898!2.64e-21!6;CL:0000809!2.64e-21!6;CL:0000810!2.64e-21!6;CL:0000895!2.64e-21!6;CL:0000808!2.64e-21!6;CL:0000894!2.64e-21!6;CL:0000806!2.64e-21!6;CL:0000807!2.64e-21!6;CL:0000805!2.64e-21!6;CL:0002425!2.64e-21!6;CL:0002436!2.64e-21!6;CL:0002427!2.64e-21!6;CL:0002428!2.64e-21!6;CL:0002429!2.64e-21!6;CL:0002433!2.64e-21!6;CL:0002431!2.64e-21!6;CL:0002432!2.64e-21!6;CL:0000738!4.21e-20!17;CL:0002087!4.21e-20!17;CL:0002320!1.73e-19!46;CL:0000134!1.73e-19!46;CL:0000219!4.20e-16!54;CL:0000034!6.11e-11!97;CL:0000553!1.06e-09!6;CL:0000556!1.06e-09!6;CL:0000723!3.53e-08!91;CL:0000048!3.53e-08!91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.73e-19!46;UBERON:0002193!2.61e-13!48;UBERON:0002405!2.61e-13!48;UBERON:0002370!3.52e-13!23;UBERON:0000974!3.52e-13!23;UBERON:0004807!3.52e-13!23;UBERON:0005058!3.52e-13!23;UBERON:0003351!3.52e-13!23;UBERON:0009113!3.52e-13!23;UBERON:0003295!3.52e-13!23;UBERON:0009722!3.52e-13!23;UBERON:0005562!3.52e-13!23;UBERON:0007690!3.52e-13!23;UBERON:0006562!1.47e-12!24;UBERON:0003408!1.47e-12!24;UBERON:0001557!1.47e-12!24;UBERON:0001042!1.47e-12!24;UBERON:0008814!1.47e-12!24;UBERON:0009145!1.47e-12!24;UBERON:0002390!2.17e-12!45;UBERON:0003061!2.17e-12!45;UBERON:0000072!5.63e-11!27;UBERON:0004177!4.21e-10!29;UBERON:0005057!4.21e-10!29;UBERON:0000077!6.54e-10!35;UBERON:0000063!4.42e-08!35;UBERON:0007811!8.24e-08!36 | |||
|tfbs_overrepresentation_for_novel_motifs=0.557864,0.612204,0.529553,0.603273,0.406364,0.618805,0.715644,0.300268,0.310789,0.115752,0.668936,0.702872,0.300533,0.728641,0.424775,0,0.930881,0.397593,0.775038,0.185796,0.489529,0.44579,0.727684,1.04384,0.537749,0.757752,0.274609,0.641282,0.456327,0.227599,0.626183,1.03545,0.395107,0.253145,0.425309,0.20704,0.384813,0.699032,0.360612,0.328675,0.401916,0.631725,0.419293,0.426986,0.4934,0.591277,0.847828,0.658142,0.370501,0.459555,0.912738,0.786094,0.627649,1.18062,1.19842,0.73621,0.469329,0.689304,0.26467,0.734051,1.01481,0.796017,0.323911,0.901018,0.747985,0.943088,1.33705,1.68977,1.00999,1.54147,0.509047,0.827208,2.08316,1.23259,0.257421,0.245132,0.253065,0.835925,0.997094,0.494135,0.308173,0.948899,0.794502,0.796301,1.1148,0.0793594,0.618102,0.645625,0.852952,1.85284,1.40768,1.11989,1.04863,0.412897,0.356133,0.3366,0.297538,1.05152,0.848095,0.20438,0.384901,1.03517,1.16282,0.913356,0.91226,0.631253,0.97421,0.653843,0.499439,0.491483,0.550229,1.16464,0.495367,0.674448,1.41481,0.399936,0.328405,0.607321,0.932233,0.380707,1.23809,0.879184,0.759676,0.834976,1.46955,1.00091,0.724289,1.04166,1.33551,0.416189,1.14546,0.595426,1.3055,0.750642,1.43666,0.44142,0.566955,0.633235,1.3869,2.2222,1.82084,1.34183,0.772375,1.04623,0.905521,0.632211,0.851091,2.18247,0.569503,0.408309,0.230371,2.6072,1.18223,0.343194,0.749664,1.26545,0.787153,1.11626,0.555203,0.566652,1.39653,1.11392,1.00137,0.547782,0.90208,0.741834,0.383572,0.701187,0.745913 | |||
|tfbs_overrepresentation_jaspar=MA0003.1;0.406907,MA0004.1;0.603793,MA0006.1;1.07705,MA0007.1;0.587678,MA0009.1;1.06266,MA0014.1;0.418772,MA0017.1;0.449113,MA0019.1;0.874061,MA0024.1;1.01759,MA0025.1;1.30092,MA0027.1;2.72141,MA0028.1;0.43138,MA0029.1;0.995171,MA0030.1;1.00195,MA0031.1;0.965177,MA0038.1;0.757669,MA0040.1;1.07552,MA0041.1;0.522007,MA0042.1;0.507715,MA0043.1;1.1618,MA0046.1;1.09955,MA0048.1;0.205696,MA0050.1;0.645342,MA0051.1;0.767098,MA0052.1;1.08379,MA0055.1;0.0851423,MA0056.1;0,MA0057.1;2.39011,MA0058.1;0.50032,MA0059.1;0.513699,MA0060.1;0.330907,MA0061.1;0.364227,MA0063.1;0,MA0066.1;0.746072,MA0067.1;1.41352,MA0068.1;0.197245,MA0069.1;1.08414,MA0070.1;1.07418,MA0071.1;0.644448,MA0072.1;1.06547,MA0073.1;11.9602,MA0074.1;0.708108,MA0076.1;0.470037,MA0077.1;1.04318,MA0078.1;0.801834,MA0081.1;1.33193,MA0083.1;1.16099,MA0084.1;1.74401,MA0087.1;1.11687,MA0088.1;0.148348,MA0089.1;0,MA0090.1;1.39153,MA0091.1;0.617887,MA0092.1;0.567278,MA0093.1;0.440484,MA0095.1;0,MA0098.1;0,MA0100.1;0.695835,MA0101.1;0.523409,MA0103.1;0.460936,MA0105.1;0.248108,MA0106.1;0.809991,MA0107.1;0.454197,MA0108.2;0.897859,MA0109.1;0,MA0111.1;0.582193,MA0113.1;0.780358,MA0114.1;0.361633,MA0115.1;1.16466,MA0116.1;0.419688,MA0117.1;1.13165,MA0119.1;0.524046,MA0122.1;1.15196,MA0124.1;1.35963,MA0125.1;1.28445,MA0130.1;0,MA0131.1;0.869325,MA0132.1;0,MA0133.1;0,MA0135.1;1.19898,MA0136.1;1.73051,MA0139.1;0.295945,MA0140.1;0.695713,MA0141.1;0.482463,MA0142.1;0.950155,MA0143.1;0.797553,MA0144.1;0.365053,MA0145.1;1.48363,MA0146.1;0.21827,MA0147.1;0.378658,MA0148.1;0.621195,MA0149.1;0.529387,MA0062.2;0.254018,MA0035.2;1.67146,MA0039.2;0.489701,MA0138.2;0.861035,MA0002.2;0.809945,MA0137.2;0.479301,MA0104.2;0.315156,MA0047.2;0.75686,MA0112.2;2.12679,MA0065.2;0.158101,MA0150.1;0.587557,MA0151.1;0,MA0152.1;0.756973,MA0153.1;1.21594,MA0154.1;0.203217,MA0155.1;0.173445,MA0156.1;2.05819,MA0157.1;0.91689,MA0158.1;0,MA0159.1;0.389847,MA0160.1;0.624415,MA0161.1;0,MA0162.1;1.87338,MA0163.1;0.230013,MA0164.1;0.729558,MA0080.2;2.98824,MA0018.2;0.739807,MA0099.2;0.854449,MA0079.2;3.38617,MA0102.2;1.79669,MA0258.1;0.346619,MA0259.1;0.960816,MA0442.1;0 | |||
}} | |||
Latest revision as of 17:15, 17 September 2013
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr13:30878237..30878249,+ | p@chr13:30878237..30878249 + |
| Mm9::chr14:122328651..122328669,- | p@chr14:122328651..122328669 - |
| Mm9::chr1:161983227..161983241,- | p@chr1:161983227..161983241 - |
| Mm9::chr5:122669837..122669864,+ | p@chr5:122669837..122669864 + |
| Mm9::chr7:6107402..6107413,+ | p@chr7:6107402..6107413 + |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
no results for this coexpression
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| connective tissue | 1.73e-19 | 46 |
| hemolymphoid system | 2.61e-13 | 48 |
| immune system | 2.61e-13 | 48 |
| thymus | 3.52e-13 | 23 |
| neck | 3.52e-13 | 23 |
| respiratory system epithelium | 3.52e-13 | 23 |
| hemolymphoid system gland | 3.52e-13 | 23 |
| pharyngeal epithelium | 3.52e-13 | 23 |
| thymic region | 3.52e-13 | 23 |
| pharyngeal gland | 3.52e-13 | 23 |
| entire pharyngeal arch endoderm | 3.52e-13 | 23 |
| thymus primordium | 3.52e-13 | 23 |
| early pharyngeal endoderm | 3.52e-13 | 23 |
| pharynx | 1.47e-12 | 24 |
| gland of gut | 1.47e-12 | 24 |
| upper respiratory tract | 1.47e-12 | 24 |
| chordate pharynx | 1.47e-12 | 24 |
| pharyngeal arch system | 1.47e-12 | 24 |
| pharyngeal region of foregut | 1.47e-12 | 24 |
| hematopoietic system | 2.17e-12 | 45 |
| blood island | 2.17e-12 | 45 |
| segment of respiratory tract | 5.63e-11 | 27 |
| hemopoietic organ | 4.21e-10 | 29 |
| immune organ | 4.21e-10 | 29 |
| mixed endoderm/mesoderm-derived structure | 6.54e-10 | 35 |
| organ segment | 4.42e-08 | 35 |
| craniocervical region | 8.24e-08 | 36 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 0.406907 |
| MA0004.1 | 0.603793 |
| MA0006.1 | 1.07705 |
| MA0007.1 | 0.587678 |
| MA0009.1 | 1.06266 |
| MA0014.1 | 0.418772 |
| MA0017.1 | 0.449113 |
| MA0019.1 | 0.874061 |
| MA0024.1 | 1.01759 |
| MA0025.1 | 1.30092 |
| MA0027.1 | 2.72141 |
| MA0028.1 | 0.43138 |
| MA0029.1 | 0.995171 |
| MA0030.1 | 1.00195 |
| MA0031.1 | 0.965177 |
| MA0038.1 | 0.757669 |
| MA0040.1 | 1.07552 |
| MA0041.1 | 0.522007 |
| MA0042.1 | 0.507715 |
| MA0043.1 | 1.1618 |
| MA0046.1 | 1.09955 |
| MA0048.1 | 0.205696 |
| MA0050.1 | 0.645342 |
| MA0051.1 | 0.767098 |
| MA0052.1 | 1.08379 |
| MA0055.1 | 0.0851423 |
| MA0056.1 | 0 |
| MA0057.1 | 2.39011 |
| MA0058.1 | 0.50032 |
| MA0059.1 | 0.513699 |
| MA0060.1 | 0.330907 |
| MA0061.1 | 0.364227 |
| MA0063.1 | 0 |
| MA0066.1 | 0.746072 |
| MA0067.1 | 1.41352 |
| MA0068.1 | 0.197245 |
| MA0069.1 | 1.08414 |
| MA0070.1 | 1.07418 |
| MA0071.1 | 0.644448 |
| MA0072.1 | 1.06547 |
| MA0073.1 | 11.9602 |
| MA0074.1 | 0.708108 |
| MA0076.1 | 0.470037 |
| MA0077.1 | 1.04318 |
| MA0078.1 | 0.801834 |
| MA0081.1 | 1.33193 |
| MA0083.1 | 1.16099 |
| MA0084.1 | 1.74401 |
| MA0087.1 | 1.11687 |
| MA0088.1 | 0.148348 |
| MA0089.1 | 0 |
| MA0090.1 | 1.39153 |
| MA0091.1 | 0.617887 |
| MA0092.1 | 0.567278 |
| MA0093.1 | 0.440484 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.695835 |
| MA0101.1 | 0.523409 |
| MA0103.1 | 0.460936 |
| MA0105.1 | 0.248108 |
| MA0106.1 | 0.809991 |
| MA0107.1 | 0.454197 |
| MA0108.2 | 0.897859 |
| MA0109.1 | 0 |
| MA0111.1 | 0.582193 |
| MA0113.1 | 0.780358 |
| MA0114.1 | 0.361633 |
| MA0115.1 | 1.16466 |
| MA0116.1 | 0.419688 |
| MA0117.1 | 1.13165 |
| MA0119.1 | 0.524046 |
| MA0122.1 | 1.15196 |
| MA0124.1 | 1.35963 |
| MA0125.1 | 1.28445 |
| MA0130.1 | 0 |
| MA0131.1 | 0.869325 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 1.19898 |
| MA0136.1 | 1.73051 |
| MA0139.1 | 0.295945 |
| MA0140.1 | 0.695713 |
| MA0141.1 | 0.482463 |
| MA0142.1 | 0.950155 |
| MA0143.1 | 0.797553 |
| MA0144.1 | 0.365053 |
| MA0145.1 | 1.48363 |
| MA0146.1 | 0.21827 |
| MA0147.1 | 0.378658 |
| MA0148.1 | 0.621195 |
| MA0149.1 | 0.529387 |
| MA0062.2 | 0.254018 |
| MA0035.2 | 1.67146 |
| MA0039.2 | 0.489701 |
| MA0138.2 | 0.861035 |
| MA0002.2 | 0.809945 |
| MA0137.2 | 0.479301 |
| MA0104.2 | 0.315156 |
| MA0047.2 | 0.75686 |
| MA0112.2 | 2.12679 |
| MA0065.2 | 0.158101 |
| MA0150.1 | 0.587557 |
| MA0151.1 | 0 |
| MA0152.1 | 0.756973 |
| MA0153.1 | 1.21594 |
| MA0154.1 | 0.203217 |
| MA0155.1 | 0.173445 |
| MA0156.1 | 2.05819 |
| MA0157.1 | 0.91689 |
| MA0158.1 | 0 |
| MA0159.1 | 0.389847 |
| MA0160.1 | 0.624415 |
| MA0161.1 | 0 |
| MA0162.1 | 1.87338 |
| MA0163.1 | 0.230013 |
| MA0164.1 | 0.729558 |
| MA0080.2 | 2.98824 |
| MA0018.2 | 0.739807 |
| MA0099.2 | 0.854449 |
| MA0079.2 | 3.38617 |
| MA0102.2 | 1.79669 |
| MA0258.1 | 0.346619 |
| MA0259.1 | 0.960816 |
| MA0442.1 | 0 |
