FFCP PHASE1:Hg19::chr14:57277098..57277116,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5015 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8522 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-1bp_to_uc010aou.2_5end | |||
|cluster_id=chr14:57277098..57277116,- | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_3_at_OTX2_5end | |||
|id=chr14:57277098..57277116,- | |||
|ontology_enrichment_celltype=CL:0002322!3.41e-20!5;CL:0002586!4.81e-14!3;CL:0000149!1.22e-10!4;CL:0000147!1.63e-10!14;CL:0000128!1.55e-09!7;CL:0000126!1.55e-09!7;CL:0000127!1.55e-09!7;CL:0002453!1.55e-09!7;CL:0002549!2.14e-09!2;CL:0002319!1.21e-08!25;CL:0000243!2.05e-08!15;CL:0000125!2.05e-08!15;CL:0000030!2.05e-08!15;CL:0000339!2.05e-08!15;CL:0000333!7.08e-08!41;CL:0000095!1.85e-07!17;CL:0000123!1.85e-07!17;CL:0000133!2.51e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002586;1.05e-30;3!CL:0000149;3.29e-23;4!CL:0000147;1.12e-11;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.00e-30,3;CL:0000149,3.17e-23,4;CL:0000147,1.10e-11,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.08e-14;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;3.67e-08;11!DOID:3095;2.51e-07;22!DOID:2994;2.51e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,3.86e-08,11;DOID:3095,2.55e-07,22;DOID:2994,2.55e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0005743!5.36e-44!86;UBERON:0000073!5.89e-42!94;UBERON:0001016!5.89e-42!94;UBERON:0001017!2.00e-34!82;UBERON:0000955!4.08e-33!69;UBERON:0006238!4.08e-33!69;UBERON:0002346!1.02e-31!90;UBERON:0002616!1.03e-30!59;UBERON:0003075!1.64e-28!86;UBERON:0007284!1.64e-28!86;UBERON:0004733!2.48e-26!12;UBERON:0002028!2.48e-26!12;UBERON:0007277!2.48e-26!12;UBERON:0001049!3.66e-26!57;UBERON:0005068!3.66e-26!57;UBERON:0006241!3.66e-26!57;UBERON:0007135!3.66e-26!57;UBERON:0004732!3.50e-24!13;UBERON:0000033!5.57e-23!123;UBERON:0000924!1.32e-22!173;UBERON:0006601!1.32e-22!173;UBERON:0000966!2.03e-22!5;UBERON:0005388!2.03e-22!5;UBERON:0001802!2.03e-22!5;UBERON:0000153!1.34e-21!129;UBERON:0007811!1.34e-21!129;UBERON:0003076!9.66e-21!15;UBERON:0003057!9.66e-21!15;UBERON:0004121!3.26e-20!169;UBERON:0002298!5.83e-18!8;UBERON:0002680!1.06e-15!9;UBERON:0001895!1.06e-15!9;UBERON:0010092!1.06e-15!9;UBERON:0003056!1.35e-15!61;UBERON:0001894!3.18e-15!7;UBERON:0006222!3.18e-15!7;UBERON:0001781!4.81e-14!3;UBERON:0001782!4.81e-14!3;UBERON:0005424!4.81e-14!3;UBERON:0001896!1.46e-13!3;UBERON:0005290!1.46e-13!3;UBERON:0010096!1.46e-13!3;UBERON:0002780!1.44e-11!41;UBERON:0001890!1.44e-11!41;UBERON:0006240!1.44e-11!41;UBERON:0003080!3.06e-11!42;UBERON:0002037!3.50e-11!6;UBERON:0006215!3.50e-11!6;UBERON:0007023!1.03e-10!115;UBERON:0003296!1.47e-10!4;UBERON:0010133!1.47e-10!4;UBERON:0001905!3.51e-10!2;UBERON:0002757!3.51e-10!2;UBERON:0010134!3.51e-10!2;UBERON:0002784!3.51e-10!2;UBERON:0005408!3.51e-10!2;UBERON:0001899!3.51e-10!2;UBERON:0003947!2.14e-09!2;UBERON:0005629!2.14e-09!2;UBERON:0005358!2.14e-09!2;UBERON:0001886!2.14e-09!2;UBERON:0004086!2.14e-09!2;UBERON:0005282!2.14e-09!2;UBERON:0005281!2.14e-09!2;UBERON:0000970!1.92e-07!20;UBERON:0002104!4.70e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.10e-50;5!UBERON:0005388;2.10e-50;5!UBERON:0001802;2.10e-50;5!UBERON:0001781;1.05e-30;3!UBERON:0001782;1.05e-30;3!UBERON:0001905;1.12e-21;2!UBERON:0002757;1.12e-21;2!UBERON:0010134;1.12e-21;2!UBERON:0005408;1.12e-21;2!UBERON:0001899;1.12e-21;2!UBERON:0000970;8.66e-18;20!UBERON:0002104;6.34e-17;21!UBERON:0000020;2.02e-15;23!UBERON:0001032;9.20e-15;24!UBERON:0004456;9.20e-15;24!UBERON:0001896;3.50e-14;3!UBERON:0005290;3.50e-14;3!UBERON:0000019;2.92e-13;19!UBERON:0000047;2.92e-13;19!UBERON:0004088;2.92e-13;19!UBERON:0010230;2.92e-13;19!UBERON:0001456;5.48e-12;21!UBERON:0003296;2.55e-11;4!UBERON:0010133;2.55e-11;4!UBERON:0002784;2.55e-11;4!UBERON:0007625;8.31e-09;11!UBERON:0004733;6.05e-08;12!UBERON:0002028;6.05e-08;12!UBERON:0002298;1.55e-07;6!UBERON:0004732;2.27e-07;13!UBERON:0001894;7.90e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.82e-42,6;UBERON:0005388,4.82e-42,6;UBERON:0001802,4.82e-42,6;UBERON:0001782,1.00e-30,3;UBERON:0005424,1.00e-30,3;UBERON:0001781,3.17e-23,4;UBERON:0001905,1.12e-21,2;UBERON:0002757,1.12e-21,2;UBERON:0010134,1.12e-21,2;UBERON:0005408,1.12e-21,2;UBERON:0001899,1.12e-21,2;UBERON:0000970,6.25e-17,21;UBERON:0002104,6.25e-17,21;UBERON:0000020,9.09e-15,24;UBERON:0001032,9.09e-15,24;UBERON:0004456,9.09e-15,24;UBERON:0001896,2.96e-14,3;UBERON:0005290,2.96e-14,3;UBERON:0010096,2.96e-14,3;UBERON:0000019,1.34e-12,20;UBERON:0000047,1.34e-12,20;UBERON:0010312,1.34e-12,20;UBERON:0004088,1.34e-12,20;UBERON:0010230,1.34e-12,20;UBERON:0003072,1.34e-12,20;UBERON:0004128,1.34e-12,20;UBERON:0003071,1.34e-12,20;UBERON:0002346,2.38e-12,86;UBERON:0001456,1.92e-11,22;UBERON:0003296,2.55e-11,4;UBERON:0010133,2.55e-11,4;UBERON:0002784,2.55e-11,4;UBERON:0003075,1.03e-10,82;UBERON:0007284,1.03e-10,82;UBERON:0004121,4.20e-09,171;UBERON:0000924,4.20e-09,171;UBERON:0006601,4.20e-09,171;UBERON:0007625,8.20e-09,11;UBERON:0000955,3.02e-08,68;UBERON:0006238,3.02e-08,68;UBERON:0010371,3.64e-08,104;UBERON:0005085,4.45e-08,31;UBERON:0004733,5.83e-08,12;UBERON:0002028,5.83e-08,12;UBERON:0007277,5.83e-08,12;UBERON:0001016,1.31e-07,89;UBERON:0002298,1.43e-07,6;UBERON:0004732,2.19e-07,13;UBERON:0003056,2.33e-07,61;UBERON:0001894,7.90e-07,7;UBERON:0006222,7.90e-07,7;UBERON:0001017,8.43e-07,81 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492484232307152,0.612002073732759,0,0.286235987131057,0.684372125364421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81628913173918,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0.929551542956147,3.10983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5402556302375,11.4805125994897,18.8719468905296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1097033972572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65868889896837,0.295547618953547,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.943615861729479,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.26521037200183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681017030557878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.9225034577724,1.99672292766334,0.558867626472451,78.0286301040342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.58277830875868,0,0.371807292777007,1.11728983594649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,80.8909772176213,58.5133676660754,0.606965604236632,0,0,0,0,0.203909198930495,0,0,0,0,0,0,0,0,0,26.0889386244796,59.7291452349707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.1974490332855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0,0.252332849670158,2.18531143927391,1.90047751517155,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@OTX2 | |||
}} |
Latest revision as of 17:45, 24 September 2015
Short description: | p3@OTX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_OTX2_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -1bp_to_uc010aou.2_5end |
EntrezGene: | OTX2 |
HGNC: | 8522 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.00e-30 | 3 |
visual pigment cell | 3.17e-23 | 4 |
pigment cell | 1.10e-11 | 14 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 3.86e-08 | 11 |
germ cell and embryonal cancer | 2.55e-07 | 22 |
germ cell cancer | 2.55e-07 | 22 |