FFCP PHASE1:Hg19::chr8:73921067..73921078,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:73921067..73921078,+
|short_description=p3@TERF1
|description=CAGE_peak_3_at_TERF1_5end
|association_with_transcript=-18bp_to_NM_003218,NM_017489,uc003xzc....") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7013 | |EntrezGene=7013 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11728 | |HGNC=11728 | ||
|TSSclassifier=strong | |||
|UniProt=P54274 | |UniProt=P54274 | ||
|association_with_transcript=-18bp_to_NM_003218,NM_017489,uc003xzc.2,uc003xzd.2,uc003xze.2_5end | |||
|cluster_id=chr8:73921067..73921078,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_3_at_TERF1_5end | |||
|id=chr8:73921067..73921078,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002322;3.21e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.78e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.06e-17!235;DOID:14566!7.38e-17!239;DOID:0050686!4.41e-11!137;DOID:0050687!2.86e-09!143;DOID:2531!2.33e-08!51;DOID:0060083!2.33e-08!51;DOID:1240!6.99e-08!39;DOID:305!3.25e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.71e-10,235;DOID:0050686,1.56e-09,137;DOID:14566,2.86e-09,239;DOID:2531,1.09e-07,51;DOID:0060083,1.09e-07,51;DOID:1240,3.56e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001017!7.34e-20!82;UBERON:0005743!1.88e-18!86;UBERON:0000073!4.14e-18!94;UBERON:0001016!4.14e-18!94;UBERON:0001049!3.48e-16!57;UBERON:0005068!3.48e-16!57;UBERON:0006241!3.48e-16!57;UBERON:0007135!3.48e-16!57;UBERON:0000955!6.84e-16!69;UBERON:0006238!6.84e-16!69;UBERON:0002616!3.38e-14!59;UBERON:0002780!2.28e-12!41;UBERON:0001890!2.28e-12!41;UBERON:0006240!2.28e-12!41;UBERON:0003080!2.35e-12!42;UBERON:0003075!2.51e-12!86;UBERON:0007284!2.51e-12!86;UBERON:0002346!1.36e-11!90;UBERON:0002020!1.72e-11!34;UBERON:0003528!1.72e-11!34;UBERON:0001869!4.13e-11!32;UBERON:0000033!4.49e-11!123;UBERON:0000153!6.79e-11!129;UBERON:0007811!6.79e-11!129;UBERON:0004121!7.31e-11!169;UBERON:0001893!1.68e-10!34;UBERON:0000924!1.78e-10!173;UBERON:0006601!1.78e-10!173;UBERON:0002791!5.10e-10!33;UBERON:0002619!3.73e-09!22;UBERON:0000956!6.49e-09!25;UBERON:0000203!6.49e-09!25;UBERON:0003056!1.29e-08!61;UBERON:0001950!3.28e-08!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;8.34e-13;22!UBERON:0001950;1.94e-11;20!UBERON:0001869;2.75e-11;32!UBERON:0003528;3.37e-11;34!UBERON:0002020;3.37e-11;34!UBERON:0000956;1.52e-10;25!UBERON:0000203;1.52e-10;25!UBERON:0002791;3.88e-10;32!UBERON:0001893;9.09e-10;34!UBERON:0002780;1.26e-09;41!UBERON:0001890;1.26e-09;41!UBERON:0000073;1.63e-09;53!UBERON:0002616;1.63e-09;53!UBERON:0001017;8.60e-08;75!UBERON:0000955;8.97e-08;68!UBERON:0001016;2.93e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.61e-22,81;UBERON:0001016,2.84e-20,89;UBERON:0000073,1.58e-18,53;UBERON:0002616,1.58e-18,53;UBERON:0000955,4.10e-18,68;UBERON:0006238,4.10e-18,68;UBERON:0001049,5.44e-18,56;UBERON:0005068,5.44e-18,56;UBERON:0006241,5.44e-18,56;UBERON:0007135,5.44e-18,56;UBERON:0002780,1.04e-14,41;UBERON:0001890,1.04e-14,41;UBERON:0003080,1.04e-14,41;UBERON:0006240,1.04e-14,41;UBERON:0003075,2.66e-14,82;UBERON:0007284,2.66e-14,82;UBERON:0003528,1.09e-13,34;UBERON:0002020,1.09e-13,34;UBERON:0002619,1.22e-13,22;UBERON:0001869,1.86e-13,32;UBERON:0002346,6.23e-13,86;UBERON:0001893,3.47e-12,34;UBERON:0001950,4.11e-12,20;UBERON:0002791,4.59e-12,32;UBERON:0000956,2.97e-11,25;UBERON:0000203,2.97e-11,25;UBERON:0003056,5.93e-11,61;UBERON:0011216,2.56e-10,223;UBERON:0010371,1.48e-09,104;UBERON:0004121,2.66e-08,171;UBERON:0000924,2.66e-08,171;UBERON:0006601,2.66e-08,171;UBERON:0010314,6.13e-07,132 | |||
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|short_description=p3@TERF1 | |||
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Latest revision as of 01:40, 19 September 2015
Short description: | p3@TERF1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TERF1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -18bp_to_NM_003218, NM_017489, uc003xzc.2, uc003xzd.2, uc003xze.2_5end |
EntrezGene: | TERF1 |
HGNC: | 11728 |
UniProt: | P54274 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.78e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.61e-22 | 81 |
nervous system | 2.84e-20 | 89 |
regional part of nervous system | 1.58e-18 | 53 |
regional part of brain | 1.58e-18 | 53 |
brain | 4.10e-18 | 68 |
future brain | 4.10e-18 | 68 |
neural tube | 5.44e-18 | 56 |
neural rod | 5.44e-18 | 56 |
future spinal cord | 5.44e-18 | 56 |
neural keel | 5.44e-18 | 56 |
regional part of forebrain | 1.04e-14 | 41 |
forebrain | 1.04e-14 | 41 |
anterior neural tube | 1.04e-14 | 41 |
future forebrain | 1.04e-14 | 41 |
neural plate | 2.66e-14 | 82 |
presumptive neural plate | 2.66e-14 | 82 |
brain grey matter | 1.09e-13 | 34 |
gray matter | 1.09e-13 | 34 |
regional part of cerebral cortex | 1.22e-13 | 22 |
cerebral hemisphere | 1.86e-13 | 32 |
neurectoderm | 6.23e-13 | 86 |
telencephalon | 3.47e-12 | 34 |
neocortex | 4.11e-12 | 20 |
regional part of telencephalon | 4.59e-12 | 32 |
cerebral cortex | 2.97e-11 | 25 |
pallium | 2.97e-11 | 25 |
pre-chordal neural plate | 5.93e-11 | 61 |
organ system subdivision | 2.56e-10 | 223 |
ecto-epithelium | 1.48e-09 | 104 |
ectoderm-derived structure | 2.66e-08 | 171 |
ectoderm | 2.66e-08 | 171 |
presumptive ectoderm | 2.66e-08 | 171 |
structure with developmental contribution from neural crest | 6.13e-07 | 132 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.71e-10 | 235 |
organ system cancer | 1.56e-09 | 137 |
disease of cellular proliferation | 2.86e-09 | 239 |
hematologic cancer | 1.09e-07 | 51 |
immune system cancer | 1.09e-07 | 51 |
leukemia | 3.56e-07 | 39 |