FFCP PHASE1:Hg19::chr6:152702306..152702529,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |||
|TSSclassifier=strong | |||
|UniProt=Q3ZCV0 | |||
|association_with_transcript=0bp_to_ENST00000471834,uc003qov.2,uc010kja.1_5end | |||
|cluster_id=chr6:152702306..152702529,- | |||
|description=CAGE_peak_1_at_SYNE1_5end | |||
|id=chr6:152702306..152702529,- | |||
|ontology_enrichment_celltype=CL:0000055!7.76e-16!180;CL:0000057!1.63e-09!75;CL:0002620!1.61e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.25e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.59e-10,76;CL:0002620,1.24e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.05e-20!365;UBERON:0000481!1.22e-15!347;UBERON:0000468!4.47e-15!659;UBERON:0007023!4.33e-14!115;UBERON:0000483!4.84e-11!309;UBERON:0000467!5.00e-11!625;UBERON:0000073!6.04e-11!94;UBERON:0001016!6.04e-11!94;UBERON:0000119!6.42e-11!312;UBERON:0000477!7.17e-11!286;UBERON:0005743!8.61e-11!86;UBERON:0000480!9.07e-11!626;UBERON:0001017!1.26e-10!82;UBERON:0000924!1.30e-10!173;UBERON:0006601!1.30e-10!173;UBERON:0002346!1.45e-10!90;UBERON:0001049!1.49e-10!57;UBERON:0005068!1.49e-10!57;UBERON:0006241!1.49e-10!57;UBERON:0007135!1.49e-10!57;UBERON:0004121!8.29e-10!169;UBERON:0002616!9.68e-10!59;UBERON:0003075!1.20e-09!86;UBERON:0007284!1.20e-09!86;UBERON:0000062!1.38e-09!511;UBERON:0000955!2.00e-09!69;UBERON:0006238!2.00e-09!69;UBERON:0004111!3.31e-09!241;UBERON:0000025!5.51e-09!194;UBERON:0002050!3.41e-08!605;UBERON:0005423!3.41e-08!605;UBERON:0000033!4.70e-08!123;UBERON:0000922!5.29e-08!612;UBERON:0003080!5.56e-08!42;UBERON:0000923!6.19e-08!604;UBERON:0005291!6.19e-08!604;UBERON:0006598!6.19e-08!604;UBERON:0002532!6.19e-08!604;UBERON:0002780!9.22e-08!41;UBERON:0001890!9.22e-08!41;UBERON:0006240!9.22e-08!41;UBERON:0000153!1.17e-07!129;UBERON:0007811!1.17e-07!129;UBERON:0002100!3.53e-07!216;UBERON:0002020!8.72e-07!34;UBERON:0003528!8.72e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.49e-14,114;UBERON:0010314,1.66e-13,132;UBERON:0004121,4.90e-11,171;UBERON:0000924,4.90e-11,171;UBERON:0006601,4.90e-11,171;UBERON:0002346,6.25e-11,86;UBERON:0000483,1.47e-10,306;UBERON:0001049,1.72e-10,56;UBERON:0005068,1.72e-10,56;UBERON:0006241,1.72e-10,56;UBERON:0007135,1.72e-10,56;UBERON:0000119,1.94e-10,309;UBERON:0001016,3.28e-10,89;UBERON:0001017,3.74e-10,81;UBERON:0003075,5.54e-10,82;UBERON:0007284,5.54e-10,82;UBERON:0000073,2.12e-09,53;UBERON:0002616,2.12e-09,53;UBERON:0000955,4.03e-09,68;UBERON:0006238,4.03e-09,68;UBERON:0004111,7.02e-09,240;UBERON:0011216,7.14e-09,223;UBERON:0000025,2.41e-08,192;UBERON:0010371,2.54e-08,104;UBERON:0002780,7.04e-08,41;UBERON:0001890,7.04e-08,41;UBERON:0003080,7.04e-08,41;UBERON:0006240,7.04e-08,41;UBERON:0003528,6.94e-07,34;UBERON:0002020,6.94e-07,34 | |||
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|short_description=p1@SYNE1 | |||
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Latest revision as of 06:41, 16 September 2015
Short description: | p1@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYNE1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000471834, uc003qov.2, uc010kja.1_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | Q3ZCV0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.59e-10 | 76 |
skin fibroblast | 1.24e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.49e-14 | 114 |
structure with developmental contribution from neural crest | 1.66e-13 | 132 |
ectoderm-derived structure | 4.90e-11 | 171 |
ectoderm | 4.90e-11 | 171 |
presumptive ectoderm | 4.90e-11 | 171 |
neurectoderm | 6.25e-11 | 86 |
epithelium | 1.47e-10 | 306 |
neural tube | 1.72e-10 | 56 |
neural rod | 1.72e-10 | 56 |
future spinal cord | 1.72e-10 | 56 |
neural keel | 1.72e-10 | 56 |
cell layer | 1.94e-10 | 309 |
nervous system | 3.28e-10 | 89 |
central nervous system | 3.74e-10 | 81 |
neural plate | 5.54e-10 | 82 |
presumptive neural plate | 5.54e-10 | 82 |
regional part of nervous system | 2.12e-09 | 53 |
regional part of brain | 2.12e-09 | 53 |
brain | 4.03e-09 | 68 |
future brain | 4.03e-09 | 68 |
anatomical conduit | 7.02e-09 | 240 |
organ system subdivision | 7.14e-09 | 223 |
tube | 2.41e-08 | 192 |
ecto-epithelium | 2.54e-08 | 104 |
regional part of forebrain | 7.04e-08 | 41 |
forebrain | 7.04e-08 | 41 |
anterior neural tube | 7.04e-08 | 41 |
future forebrain | 7.04e-08 | 41 |
brain grey matter | 6.94e-07 | 34 |
gray matter | 6.94e-07 | 34 |