FF:11393-118C7: Difference between revisions

Latest revision as of 17:57, 4 June 2020

Name:	Endothelial Cells - Lymphatic, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs11906
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	capillary
dev stage	fetus
sex	unknown
age	fetal
cell type	endothelial cell, lymphatic
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3676
catalog number	SC2015
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005940

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11906		CAGE		DRX008225		DRR009097

Accession ID Hg19

Library id		BAM		CTSS
CNhs11906		DRZ000522		DRZ001907

Accession ID Hg38

Library id		BAM		CTSS
CNhs11906		DRZ011872		DRZ013257

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005940

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10005.GTGGCC		sRNA-Seq		DRX037065		DRR041431

Accession ID Hg19

Library id		BAM		CTSS
SRhi10005.GTGGCC		DRZ007073

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.021
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.132
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.52
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.114
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.154
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0212
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0342
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.551
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0183
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.168
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0811
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.223
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.524
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.147
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11906

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00264
MA0003.1	MA0003.1	0.305
MA0004.1	MA0004.1	0.797
MA0006.1	MA0006.1	0.451
MA0007.1	MA0007.1	0.619
MA0009.1	MA0009.1	0.641
MA0014.1	MA0014.1	0.922
MA0017.1	MA0017.1	0.036
MA0018.2	MA0018.2	0.0222
MA0019.1	MA0019.1	0.0303
MA0024.1	MA0024.1	0.776
MA0025.1	MA0025.1	0.468
MA0027.1	MA0027.1	0.675
MA0028.1	MA0028.1	0.864
MA0029.1	MA0029.1	0.819
MA0030.1	MA0030.1	0.144
MA0031.1	MA0031.1	0.0241
MA0035.2	MA0035.2	0.315
MA0038.1	MA0038.1	0.269
MA0039.2	MA0039.2	0.688
MA0040.1	MA0040.1	0.274
MA0041.1	MA0041.1	0.0814
MA0042.1	MA0042.1	0.176
MA0043.1	MA0043.1	0.0143
MA0046.1	MA0046.1	0.938
MA0047.2	MA0047.2	0.00525
MA0048.1	MA0048.1	0.871
MA0050.1	MA0050.1	0.808
MA0051.1	MA0051.1	0.135
MA0052.1	MA0052.1	0.785
MA0055.1	MA0055.1	0.865
MA0057.1	MA0057.1	0.191
MA0058.1	MA0058.1	0.405
MA0059.1	MA0059.1	0.22
MA0060.1	MA0060.1	0.234
MA0061.1	MA0061.1	0.174
MA0062.2	MA0062.2	0.817
MA0065.2	MA0065.2	0.00188
MA0066.1	MA0066.1	0.0648
MA0067.1	MA0067.1	0.806
MA0068.1	MA0068.1	0.319
MA0069.1	MA0069.1	0.0427
MA0070.1	MA0070.1	0.921
MA0071.1	MA0071.1	0.384
MA0072.1	MA0072.1	0.403
MA0073.1	MA0073.1	0.811
MA0074.1	MA0074.1	0.765
MA0076.1	MA0076.1	0.73
MA0077.1	MA0077.1	4.68116e-8
MA0078.1	MA0078.1	0.012
MA0079.2	MA0079.2	0.671
MA0080.2	MA0080.2	2.16792e-4
MA0081.1	MA0081.1	0.0805
MA0083.1	MA0083.1	0.857
MA0084.1	MA0084.1	0.1
MA0087.1	MA0087.1	0.0359
MA0088.1	MA0088.1	0.637
MA0090.1	MA0090.1	0.104
MA0091.1	MA0091.1	0.453
MA0092.1	MA0092.1	0.596
MA0093.1	MA0093.1	0.697
MA0099.2	MA0099.2	0.527
MA0100.1	MA0100.1	0.677
MA0101.1	MA0101.1	0.0626
MA0102.2	MA0102.2	0.0194
MA0103.1	MA0103.1	0.00734
MA0104.2	MA0104.2	0.162
MA0105.1	MA0105.1	0.0103
MA0106.1	MA0106.1	0.109
MA0107.1	MA0107.1	0.116
MA0108.2	MA0108.2	0.0794
MA0111.1	MA0111.1	0.649
MA0112.2	MA0112.2	4.84369e-4
MA0113.1	MA0113.1	0.853
MA0114.1	MA0114.1	0.0182
MA0115.1	MA0115.1	0.00994
MA0116.1	MA0116.1	9.2125e-5
MA0117.1	MA0117.1	0.37
MA0119.1	MA0119.1	0.799
MA0122.1	MA0122.1	0.266
MA0124.1	MA0124.1	0.435
MA0125.1	MA0125.1	0.974
MA0131.1	MA0131.1	0.0924
MA0135.1	MA0135.1	0.351
MA0136.1	MA0136.1	0.0179
MA0137.2	MA0137.2	0.7
MA0138.2	MA0138.2	0.296
MA0139.1	MA0139.1	0.854
MA0140.1	MA0140.1	0.124
MA0141.1	MA0141.1	0.128
MA0142.1	MA0142.1	0.363
MA0143.1	MA0143.1	0.593
MA0144.1	MA0144.1	0.525
MA0145.1	MA0145.1	0.953
MA0146.1	MA0146.1	0.0333
MA0147.1	MA0147.1	0.135
MA0148.1	MA0148.1	0.00198
MA0149.1	MA0149.1	0.74
MA0150.1	MA0150.1	0.576
MA0152.1	MA0152.1	0.992
MA0153.1	MA0153.1	0.797
MA0154.1	MA0154.1	0.0092
MA0155.1	MA0155.1	0.614
MA0156.1	MA0156.1	3.07113e-4
MA0157.1	MA0157.1	0.0956
MA0159.1	MA0159.1	0.658
MA0160.1	MA0160.1	0.0962
MA0162.1	MA0162.1	0.511
MA0163.1	MA0163.1	1.62069e-4
MA0164.1	MA0164.1	0.221
MA0258.1	MA0258.1	0.019
MA0259.1	MA0259.1	0.395

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11906

Novel motif	Logo	P-value
1	1	0.232
10	10	0.0673
100	100	0.728
101	101	0.389
102	102	0.422
103	103	0.807
104	104	0.765
105	105	0.0873
106	106	0.11
107	107	0.412
108	108	0.61
109	109	0.0777
11	11	0.0894
110	110	0.88
111	111	0.677
112	112	0.288
113	113	0.856
114	114	0.491
115	115	0.118
116	116	0.00262
117	117	0.628
118	118	0.324
119	119	0.428
12	12	0.506
120	120	0.15
121	121	0.44
122	122	0.401
123	123	0.108
124	124	0.0265
125	125	0.503
126	126	0.571
127	127	0.0939
128	128	0.0974
129	129	0.875
13	13	0.585
130	130	0.863
131	131	0.303
132	132	0.675
133	133	0.999
134	134	0.985
135	135	0.215
136	136	0.455
137	137	0.656
138	138	0.82
139	139	0.296
14	14	0.514
140	140	0.0342
141	141	0.739
142	142	0.0176
143	143	0.324
144	144	0.0908
145	145	0.725
146	146	0.837
147	147	0.26
148	148	0.0108
149	149	0.324
15	15	0.214
150	150	0.893
151	151	0.401
152	152	0.458
153	153	0.387
154	154	0.588
155	155	0.22
156	156	0.058
157	157	0.376
158	158	0.978
159	159	0.786
16	16	0.0793
160	160	0.298
161	161	0.0134
162	162	0.438
163	163	0.358
164	164	0.494
165	165	0.845
166	166	0.356
167	167	0.104
168	168	0.753
169	169	0.286
17	17	0.451
18	18	0.0173
19	19	0.565
2	2	0.453
20	20	0.471
21	21	0.357
22	22	0.296
23	23	0.924
24	24	0.765
25	25	0.217
26	26	0.00897
27	27	0.368
28	28	0.905
29	29	0.392
3	3	0.207
30	30	0.632
31	31	0.48
32	32	0.0226
33	33	0.913
34	34	0.877
35	35	0.381
36	36	0.144
37	37	0.46
38	38	0.994
39	39	0.256
4	4	0.211
40	40	0.629
41	41	0.236
42	42	0.488
43	43	0.0865
44	44	0.0211
45	45	0.966
46	46	0.0648
47	47	0.062
48	48	0.259
49	49	0.11
5	5	0.653
50	50	0.658
51	51	0.365
52	52	0.251
53	53	0.59
54	54	0.335
55	55	0.819
56	56	0.232
57	57	0.571
58	58	0.0891
59	59	0.0864
6	6	0.108
60	60	0.0711
61	61	0.328
62	62	0.0325
63	63	0.229
64	64	0.0277
65	65	0.292
66	66	0.579
67	67	0.336
68	68	0.956
69	69	0.294
7	7	0.213
70	70	0.00288
71	71	0.091
72	72	0.895
73	73	0.622
74	74	0.539
75	75	0.552
76	76	0.864
77	77	0.0239
78	78	0.383
79	79	0.632
8	8	0.0861
80	80	0.717
81	81	0.184
82	82	0.327
83	83	0.851
84	84	0.206
85	85	0.118
86	86	0.887
87	87	0.328
88	88	0.228
89	89	0.237
9	9	0.431
90	90	0.339
91	91	0.596
92	92	0.541
93	93	0.845
94	94	0.125
95	95	0.474
96	96	0.413
97	97	0.392
98	98	0.0577
99	99	0.768

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11906

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000049 human lymphatic endothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000049 (human lymphatic endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008117
+|DRA_sample_Accession=CAGE@SAMD00005940
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005940
+|accession_numbers=CAGE;DRX008225;DRR009097;DRZ000522;DRZ001907;DRZ011872;DRZ013257
+|accession_numbers_RNASeq=sRNA-Seq;DRX037065;DRR041431;DRZ007073
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138
@@ Line 8: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.37!235.98!ERG;;chr18:53068911..53068935,-!p4@TCF4!2.31!225.94!TCF4;;chr20:62680984..62680999,-!p1@SOX18!2.16!186.10!SOX18;;chr17:6926362..6926377,+!p1@BCL6B!1.92!81.34!BCL6B;;chr1:214161272..214161322,+!p1@PROX1!1.89!107.11!PROX1;;chr22:19748231..19748317,+!p1@TBX1!1.86!70.96!TBX1;;chr8:10588010..10588030,-!p1@SOX7!1.80!61.59!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.76!55.90!SOX17;;chr5:71803177..71803255,-!p1@ZNF366!1.73!52.22!ZNF366;;chr12:96588368..96588394,+!p3@ELK3!1.68!122.17!ELK3;;chr9:124991204..124991246,-!p1@LHX6!1.60!38.83!LHX6;;chr13:72441315..72441454,-!p1@DACH1!1.53!64.27!DACH1;;chr7:15726243..15726293,-!p2@MEOX2!1.53!33.14!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!1.53!32.80!HIF3A;;chr17:46682321..46682362,-!p1@HOXB6!1.53!32.80!HOXB6;;chr18:22932080..22932170,-!p1@ZNF521!1.52!130.21!ZNF521;;chr7:15726296..15726315,-!p1@MEOX2!1.52!32.47!MEOX2;;chr3:169381420..169381535,-!p1@MECOM!1.51!36.48!MECOM;;chr9:14314131..14314147,-!p2@NFIB!1.44!142.59!NFIB;;chr7:115670804..115670825,-!p1@TFEC!1.44!26.44!TFEC;;chr18:53177984..53178004,-!p17@TCF4!1.41!24.77!TCF4;;chr18:53068982..53068993,-!p20@TCF4!1.37!22.43!TCF4;;chr4:146404119..146404158,+!p9@SMAD1!1.36!22.09!SMAD1;;chr10:94449703..94449718,+!p1@HHEX!1.31!73.97!HHEX;;chr4:146403912..146403972,+!p5@SMAD1!1.31!24.77!SMAD1;;chr3:168864315..168864339,-!p2@MECOM!1.29!30.46!MECOM;;chr3:114343039..114343085,-!p8@ZBTB20!1.27!17.74!ZBTB20;;chr2:177053386..177053402,+!p1@HOXD1!1.26!17.07!HOXD1;;chr17:46688334..46688385,-!p1@HOXB7!1.25!24.10!HOXB7;;chr2:46524537..46524553,+!p1@EPAS1!1.22!1496.87!EPAS1;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.06!KDM5D;;chr20:50159198..50159299,-!p1@NFATC2!1.20!21.76!NFATC2;;chr18:52989031..52989079,-!p2@TCF4!1.19!34.14!TCF4;;chr9:16705069..16705086,-!p3@BNC2!1.19!14.39!BNC2;;chr9:14314566..14314618,-!p1@NFIB!1.18!165.69!NFIB;;chr13:72441074..72441172,-!p2@DACH1!1.17!13.72!DACH1;;chr18:53257001..53257015,-!p5@TCF4!1.15!22.76!TCF4;;chr4:146402843..146402864,+!p3@SMAD1!1.14!25.44!SMAD1;;chr19:53496768..53496799,-!p1@ZNF702P!1.14!19.75!ZNF702P;;chr12:80084137..80084165,-!p10@PAWR!1.12!15.73!PAWR;;chr13:72441506..72441562,-!p3@DACH1!1.12!12.05!DACH1;;chr8:106330656..106330684,+!p1@ZFPM2!1.09!29.46!ZFPM2;;chr2:177001290..177001315,+!p1@HOXD3!1.09!11.38!HOXD3;;chr1:158985493..158985535,+!p4@IFI16!1.08!16.74!IFI16;;chr18:52989565..52989623,-!p9@TCF4!1.08!14.06!TCF4;;chr3:12330560..12330579,+!p1@PPARG!1.08!12.72!PPARG;;chr18:53068940..53068951,-!p21@TCF4!1.07!10.71!TCF4;;chr12:80084167..80084197,-!p5@PAWR!1.05!24.10!PAWR;;chr3:168865194..168865245,-!p3@MECOM!1.05!13.39!MECOM;;chr7:27196267..27196311,-!p1@HOXA7!1.03!9.71!HOXA7;;chr1:200008734..200008765,+!p2@NR5A2!1.00!9.04!NR5A2;;chr2:176994408..176994492,+!p1@HOXD8!1.00!9.04!HOXD8;;chr4:146404160..146404186,+!p13@SMAD1!0.99!8.70!SMAD1;;chr18:22932004..22932021,-!p2@ZNF521!0.99!8.70!ZNF521;;chr10:131762504..131762555,-!p1@EBF3!0.99!8.70!EBF3;;chr18:53255415..53255491,-!p1@TCF4!0.98!74.31!TCF4;;chr5:88178983..88179012,-!p1@MEF2C!0.98!68.28!MEF2C;;chr1:158979686..158979745,+!p1@IFI16!0.96!273.13!IFI16;;chr9:14314106..14314119,-!p5@NFIB!0.96!15.06!NFIB;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.03!ZFY;;chr18:52989001..52989030,-!p10@TCF4!0.95!8.70!TCF4;;chr22:38597987..38598021,+!p2@MAFF!0.94!49.20!MAFF;;chr19:13213511..13213545,-!p2@LYL1!0.94!8.37!LYL1;;chr17:41739283..41739297,-!p1@MEOX1!0.94!7.70!MEOX1;;chr18:22931979..22931992,-!p3@ZNF521!0.94!7.70!ZNF521;;chr8:106330696..106330719,+!p2@ZFPM2!0.93!9.71!ZFPM2;;chr3:114343826..114343869,-!p4@ZBTB20!0.90!14.39!ZBTB20;;chr17:46690839..46690884,-!p1@HOXB8!0.90!7.03!HOXB8;;chr18:53068893..53068902,-!p28@TCF4!0.90!7.03!TCF4;;chr3:178789522..178789564,-!p2@ZMAT3!0.89!52.89!ZMAT3;;chr2:176981499..176981522,+!p2@HOXD10!0.89!6.69!HOXD10;;chr4:146401920..146401926,+!p14@SMAD1!0.89!6.69!SMAD1;;chr7:15726220..15726236,-!p4@MEOX2!0.89!6.69!MEOX2;;chr6:21593973..21593988,+!p1@SOX4!0.88!247.36!SOX4;;chr9:14313893..14313908,-!p7@NFIB!0.87!9.37!NFIB;;chr12:80084018..80084035,-!p17@PAWR!0.87!6.36!PAWR;;chr3:128206762..128206781,-!p2@GATA2!0.86!41.51!GATA2;;chr7:113726357..113726443,+!p1@FOXP2!0.85!10.71!FOXP2;;chr7:15726176..15726191,-!p3@MEOX2!0.85!6.02!MEOX2;;chr22:19746969..19746987,+!p2@TBX1!0.85!6.02!TBX1;;chr3:168864383..168864400,-!p7@MECOM!0.85!6.02!MECOM;;chr11:128563652..128563689,+!p3@FLI1!0.85!6.02!FLI1;;chr9:14314066..14314075,-!p11@NFIB!0.85!6.02!NFIB;;chr9:14314946..14314983,-!p8@NFIB!0.85!6.02!NFIB;;chr17:46655672..46655697,-!p3@HOXB4!0.85!6.02!HOXB4;;chr15:57210961..57211012,+!p3@TCF12!0.84!20.08!TCF12;;chr1:205601064..205601087,-!p4@ELK4!0.84!12.05!ELK4;;chr19:53496806..53496848,-!p2@ZNF702P!0.83!9.04!ZNF702P;;chr19:45908292..45908374,-!p1@PPP1R13L!0.82!53.89!PPP1R13L;;chr10:35484804..35484902,+!p2@CREM!0.82!22.76!CREM;;chr20:50721803..50721857,-!p2@ZFP64!0.82!9.04!ZFP64;;chr10:31288398..31288455,-!p2@ZNF438!0.82!6.69!ZNF438;;chr13:41240737..41240787,-!p1@FOXO1!0.81!69.62!FOXO1;;chr3:114343768..114343822,-!p1@ZBTB20!0.81!25.44!ZBTB20;;chr2:46524897..46524911,+!p2@EPAS1!0.81!16.07!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!0.81!7.70!HOXB7;;chr17:1959369..1959388,+!p2@HIC1!0.80!15.06!HIC1;;chr10:45495946..45495976,+!p2@ZNF22!0.80!5.36!ZNF22;;chr7:27205136..27205164,-!p1@HOXA9!0.80!5.36!HOXA9;;chr19:46800289..46800327,+!p2@HIF3A!0.80!5.36!HIF3A;;chr1:244214577..244214593,+!p1@ZNF238!0.80!5.36!ZNF238;;chr12:80084303..80084332,-!p1@PAWR!0.79!32.80!PAWR;;chr16:69599899..69599919,+!p2@NFAT5!0.78!62.26!NFAT5;;chr9:14314522..14314556,-!p3@NFIB!0.78!12.38!NFIB;;chr2:176987441..176987454,+!p1@HOXD9!0.78!5.02!HOXD9;;chr1:200011711..200011752,+!p3@NR5A2!0.78!5.02!NR5A2;;chr11:128563948..128564003,+!p1@FLI1!0.77!65.27!FLI1;;chr4:146402997..146403020,+!p1@SMAD1!0.77!37.49!SMAD1;;chr6:106534230..106534254,+!p2@PRDM1!0.77!13.05!PRDM1;;chr18:53255839..53255854,-!p13@TCF4!0.76!5.69!TCF4;;chr18:53177899..53177918,-!p33@TCF4!0.75!4.69!TCF4;;chr6:21597765..21597779,+!p2@SOX4!0.73!39.50!SOX4;;chr2:85360499..85360598,+!p1@TCF7L1!0.73!27.45!TCF7L1;;chr18:53257027..53257052,-!p3@TCF4!0.73!19.08!TCF4;;chr18:53089538..53089578,-!p14@TCF4!0.73!4.35!TCF4;;chr12:80084120..80084136,-!p15@PAWR!0.73!4.35!PAWR;;chr13:72440772..72440847,-!p5@DACH1!0.73!4.35!DACH1;;chr7:27192185..27192209,-!p1@HOXA3!0.73!4.35!HOXA3;;chr3:33482052..33482116,-!p2@UBP1!0.71!6.69!UBP1;;chr6:106534192..106534224,+!p1@PRDM1!0.70!12.38!PRDM1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.70!12.05!ZC3H7B;;chr12:80084279..80084293,-!p8@PAWR!0.70!7.03!PAWR;;chr15:96876966..96877017,+!p12@NR2F2!0.70!6.02!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.70!4.02!HOXB3;;chr1:47695003..47695042,-!p2@TAL1!0.70!4.02!TAL1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.68!34.81!L3MBTL3;;chr9:3525968..3526016,-!p1@RFX3!0.68!24.77!RFX3;;chr4:38665810..38665827,+!p1@KLF3!0.67!62.59!KLF3;;chr11:65430554..65430579,-!p3@RELA!0.67!10.38!RELA;;chr19:35455110..35455149,-!p1@ZNF792!0.67!7.70!ZNF792;;chr17:46691732..46691766,-!p4@HOXB8!0.67!3.68!HOXB8;;chr10:31288370..31288393,-!p3@ZNF438!0.67!3.68!ZNF438;;chr5:88119580..88119602,-!p17@MEF2C!0.67!3.68!MEF2C;;chr1:47697539..47697573,-!p3@TAL1!0.67!3.68!TAL1;;chr2:46602901..46602926,+!p7@EPAS1!0.66!5.02!EPAS1;;chr5:132299008..132299026,-!p5@AFF4!0.65!8.70!AFF4;;chr12:80084862..80084884,-!p7@PAWR!0.65!8.03!PAWR;;chr11:113930291..113930339,+!p2@ZBTB16!0.65!6.02!ZBTB16;;chr15:96874012..96874042,+!p2@NR2F2!0.64!35.48!NR2F2;;chr9:3525910..3525955,-!p4@RFX3!0.64!11.38!RFX3;;chr17:46655704..46655718,-!p2@HOXB4!0.64!5.36!HOXB4;;chr1:23696448..23696453,-!p5@ZNF436!0.64!4.35!ZNF436;;chr18:53069219..53069253,-!p35@TCF4!0.64!3.35!TCF4;;chr13:72440434..72440479,-!p6@DACH1!0.64!3.35!DACH1;;chr14:74256787..74256858,-!p6@C14orf43!0.64!3.35!C14orf43;;chr22:19747040..19747054,+!p3@TBX1!0.64!3.35!TBX1;;chr2:176987463..176987479,+!p2@HOXD9!0.64!3.35!HOXD9;;chr4:146402827..146402839,+!p10@SMAD1!0.64!3.35!SMAD1;;chr15:96873984..96873999,+!p3@NR2F2!0.63!28.12!NR2F2;;chr6:7108569..7108683,+!p3@RREB1!0.63!14.73!RREB1;;chr10:94449675..94449694,+!p2@HHEX!0.63!10.04!HHEX;;chr19:49864746..49864780,-!p2@TEAD2!0.63!4.69!TEAD2;;chr13:41240717..41240735,-!p2@FOXO1!0.62!25.44!FOXO1;;chr11:128392273..128392308,-!p2@ETS1!0.62!15.73!ETS1;;chr15:60884706..60884743,-!p1@RORA!0.61!18.74!RORA;;chr5:88179195..88179224,-!p3@MEF2C!0.61!5.36!MEF2C;;chr11:113930425..113930471,+!p1@ZBTB16!0.61!4.69!ZBTB16;;chr1:8877692..8877732,-!p1@RERE!0.60!28.79!RERE;;chr6:28092375..28092412,+!p1@ZSCAN16!0.60!14.73!ZSCAN16;;chr4:146402966..146402985,+!p2@SMAD1!0.60!13.05!SMAD1;;chr15:60884747..60884774,-!p3@RORA!0.60!8.37!RORA;;chr2:231280954..231280965,+!p2@SP100!0.60!6.02!SP100;;chr22:41697484..41697496,+!p3@ZC3H7B!0.60!4.02!ZC3H7B;;chr3:21792682..21792720,-!p1@ZNF385D!0.60!3.01!ZNF385D;;chr1:214161328..214161348,+!p2@PROX1!0.60!3.01!PROX1;;chr10:45496320..45496336,+!p3@ZNF22!0.60!3.01!ZNF22;;chr10:94451574..94451587,+!p6@HHEX!0.60!3.01!HHEX;;chr17:46675558..46675577,-!p2@HOXB6!0.60!3.01!HOXB6;;chr18:53069201..53069216,-!p39@TCF4!0.60!3.01!TCF4;;chr15:96873921..96873946,+!p1@NR2F2!0.59!99.08!NR2F2;;chr2:238536207..238536290,+!p2@LRRFIP1!0.59!34.14!LRRFIP1;;chr7:26191809..26191890,+!p1@NFE2L3!0.59!17.07!NFE2L3;;chr5:124084493..124084524,-!p2@ZNF608!0.59!7.36!ZNF608;;chr4:206390..206444,+!p1@ZNF876P!0.59!5.69!ZNF876P;;chr19:13213662..13213686,-!p1@LYL1!0.59!4.69!LYL1;;chr7:64467057..64467078,-!p1@ZNF117!0.58!64.60!ZNF117;;chr10:31608127..31608156,+!p1@ZEB1!0.58!63.93!ZEB1;;chr8:146228226..146228264,-!p2@ZNF252!0.58!7.70!ZNF252P;;chr18:5295679..5295734,-!p2@ZFP161!0.58!7.03!ZFP161;;chr1:23696308..23696339,-!p2@ZNF436!0.58!6.69!ZNF436;;chr12:49454026..49454049,-!p9@MLL2!0.58!3.35!MLL2;;chr10:3827389..3827408,-!p1@KLF6!0.57!258.40!KLF6;;chr6:126112074..126112144,+!p1@NCOA7!0.57!44.85!NCOA7;;chr17:1958388..1958404,+!p1@HIC1!0.57!21.09!HIC1;;chr1:8763440..8763460,-!p2@RERE!0.57!16.74!RERE;;chr4:87857474..87857489,+!p7@AFF1!0.57!5.36!AFF1;;chr2:177001366..177001379,+!p4@HOXD3!0.57!2.68!HOXD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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002138;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001473;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=CL:0000222,CL:0005022
 |fonse_cell_line=
@@ Line 39: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11393-118C7
 |is_a=EFO:0002091;;FF:0000049
 |is_obsolete=
-|library_ids=CNhs11906
+|library_id=CNhs11906
+|library_id_phase_based=2:CNhs11906
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11393
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGGCC.11393
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11393
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGGCC.11393
 |name=Endothelial Cells - Lymphatic, donor3
 |namespace=FANTOM5
@@ Line 48: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11906,LSID834,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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@@ Line 64: / Line 82: @@
 |rna_tube_id=118C7
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10005.GTGGCC
 |sample_age=fetal
 |sample_category=primary cells
@@ Line 87: / Line 106: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11393-118C7;search_select_hide=table117:FF:11393-118C7
-|DRA_sample_Accession=CAGE@DRS008117
-|accession_numbers=DRX008225;DRR009097;DRZ000522;DRZ001907;CAGE
-|library_id=CNhs11906
 }}

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FF:11393-118C7: Difference between revisions

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Latest revision as of 17:57, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0