FF:11596-120H3: Difference between revisions

Latest revision as of 18:11, 4 June 2020

Name:	Renal Cortical Epithelial Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12728
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	epithelial cell of kidney, renal cortex
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2264
catalog number	SC4115
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005565

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12728		CAGE		DRX008426		DRR009298

Accession ID Hg19

Library id		BAM		CTSS
CNhs12728		DRZ000723		DRZ002108

Accession ID Hg38

Library id		BAM		CTSS
CNhs12728		DRZ012073		DRZ013458

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.147
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.264
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0622
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0232
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.125
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.279
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.167
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.172
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.378
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0297
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0326
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.187
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.2
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.113
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0622
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.187
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.117
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12728

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0576
MA0003.1	MA0003.1	0.805
MA0004.1	MA0004.1	0.106
MA0006.1	MA0006.1	0.0228
MA0007.1	MA0007.1	0.473
MA0009.1	MA0009.1	0.0887
MA0014.1	MA0014.1	0.157
MA0017.1	MA0017.1	0.491
MA0018.2	MA0018.2	0.978
MA0019.1	MA0019.1	0.256
MA0024.1	MA0024.1	0.0203
MA0025.1	MA0025.1	0.915
MA0027.1	MA0027.1	0.455
MA0028.1	MA0028.1	0.918
MA0029.1	MA0029.1	0.834
MA0030.1	MA0030.1	0.947
MA0031.1	MA0031.1	0.125
MA0035.2	MA0035.2	0.924
MA0038.1	MA0038.1	0.00291
MA0039.2	MA0039.2	0.00363
MA0040.1	MA0040.1	0.801
MA0041.1	MA0041.1	0.607
MA0042.1	MA0042.1	0.52
MA0043.1	MA0043.1	0.525
MA0046.1	MA0046.1	3.44311e-19
MA0047.2	MA0047.2	0.293
MA0048.1	MA0048.1	0.278
MA0050.1	MA0050.1	5.75334e-6
MA0051.1	MA0051.1	0.0136
MA0052.1	MA0052.1	0.688
MA0055.1	MA0055.1	0.208
MA0057.1	MA0057.1	0.255
MA0058.1	MA0058.1	0.0508
MA0059.1	MA0059.1	0.156
MA0060.1	MA0060.1	1.06645e-5
MA0061.1	MA0061.1	0.562
MA0062.2	MA0062.2	0.0225
MA0065.2	MA0065.2	0.687
MA0066.1	MA0066.1	0.714
MA0067.1	MA0067.1	0.0973
MA0068.1	MA0068.1	0.592
MA0069.1	MA0069.1	0.34
MA0070.1	MA0070.1	0.131
MA0071.1	MA0071.1	0.651
MA0072.1	MA0072.1	0.766
MA0073.1	MA0073.1	0.914
MA0074.1	MA0074.1	0.949
MA0076.1	MA0076.1	0.154
MA0077.1	MA0077.1	0.0606
MA0078.1	MA0078.1	0.832
MA0079.2	MA0079.2	0.604
MA0080.2	MA0080.2	4.40449e-6
MA0081.1	MA0081.1	0.01
MA0083.1	MA0083.1	0.739
MA0084.1	MA0084.1	0.156
MA0087.1	MA0087.1	0.806
MA0088.1	MA0088.1	0.578
MA0090.1	MA0090.1	1.4704e-4
MA0091.1	MA0091.1	0.00614
MA0092.1	MA0092.1	0.341
MA0093.1	MA0093.1	0.153
MA0099.2	MA0099.2	8.43974e-5
MA0100.1	MA0100.1	0.605
MA0101.1	MA0101.1	0.94
MA0102.2	MA0102.2	0.0449
MA0103.1	MA0103.1	1.10088e-7
MA0104.2	MA0104.2	0.0293
MA0105.1	MA0105.1	0.121
MA0106.1	MA0106.1	0.0594
MA0107.1	MA0107.1	1
MA0108.2	MA0108.2	0.00755
MA0111.1	MA0111.1	0.333
MA0112.2	MA0112.2	0.53
MA0113.1	MA0113.1	0.231
MA0114.1	MA0114.1	0.882
MA0115.1	MA0115.1	0.652
MA0116.1	MA0116.1	0.0955
MA0117.1	MA0117.1	0.281
MA0119.1	MA0119.1	0.0929
MA0122.1	MA0122.1	0.446
MA0124.1	MA0124.1	0.259
MA0125.1	MA0125.1	0.0475
MA0131.1	MA0131.1	0.527
MA0135.1	MA0135.1	0.556
MA0136.1	MA0136.1	0.00113
MA0137.2	MA0137.2	0.71
MA0138.2	MA0138.2	0.134
MA0139.1	MA0139.1	0.752
MA0140.1	MA0140.1	0.428
MA0141.1	MA0141.1	0.24
MA0142.1	MA0142.1	0.709
MA0143.1	MA0143.1	0.696
MA0144.1	MA0144.1	0.629
MA0145.1	MA0145.1	0.0544
MA0146.1	MA0146.1	0.946
MA0147.1	MA0147.1	0.047
MA0148.1	MA0148.1	0.433
MA0149.1	MA0149.1	0.183
MA0150.1	MA0150.1	0.374
MA0152.1	MA0152.1	0.558
MA0153.1	MA0153.1	1.44742e-14
MA0154.1	MA0154.1	0.365
MA0155.1	MA0155.1	0.826
MA0156.1	MA0156.1	0.0166
MA0157.1	MA0157.1	0.148
MA0159.1	MA0159.1	0.425
MA0160.1	MA0160.1	0.175
MA0162.1	MA0162.1	0.228
MA0163.1	MA0163.1	0.0237
MA0164.1	MA0164.1	0.719
MA0258.1	MA0258.1	0.066
MA0259.1	MA0259.1	0.44

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12728

Novel motif	Logo	P-value
1	1	0.203
10	10	0.0375
100	100	0.969
101	101	0.0971
102	102	0.318
103	103	0.994
104	104	0.986
105	105	0.558
106	106	0.654
107	107	0.155
108	108	0.503
109	109	0.615
11	11	0.399
110	110	0.376
111	111	0.529
112	112	0.419
113	113	0.882
114	114	0.00547
115	115	0.389
116	116	0.262
117	117	0.0752
118	118	0.991
119	119	0.857
12	12	0.314
120	120	0.104
121	121	0.803
122	122	0.273
123	123	0.00446
124	124	0.0322
125	125	0.689
126	126	0.361
127	127	0.413
128	128	0.66
129	129	0.0646
13	13	0.884
130	130	0.395
131	131	0.136
132	132	0.238
133	133	0.148
134	134	0.211
135	135	0.0746
136	136	0.0982
137	137	0.076
138	138	0.174
139	139	0.00109
14	14	0.674
140	140	0.252
141	141	0.687
142	142	0.214
143	143	0.138
144	144	0.274
145	145	0.55
146	146	0.346
147	147	0.574
148	148	0.0189
149	149	0.739
15	15	0.626
150	150	0.992
151	151	0.847
152	152	0.036
153	153	0.864
154	154	0.315
155	155	0.326
156	156	0.453
157	157	0.898
158	158	0.519
159	159	0.989
16	16	0.743
160	160	0.958
161	161	0.904
162	162	0.544
163	163	0.137
164	164	0.472
165	165	0.538
166	166	0.748
167	167	0.359
168	168	0.622
169	169	0.867
17	17	0.864
18	18	0.448
19	19	0.247
2	2	0.754
20	20	0.837
21	21	0.773
22	22	0.889
23	23	0.57
24	24	0.39
25	25	0.707
26	26	0.34
27	27	0.583
28	28	0.903
29	29	0.898
3	3	0.198
30	30	0.0259
31	31	0.962
32	32	0.0128
33	33	0.0971
34	34	0.793
35	35	8.12367e-4
36	36	0.477
37	37	0.949
38	38	0.836
39	39	0.308
4	4	0.983
40	40	0.0777
41	41	0.133
42	42	0.29
43	43	0.213
44	44	0.244
45	45	0.226
46	46	0.348
47	47	0.583
48	48	0.587
49	49	0.0217
5	5	0.108
50	50	0.269
51	51	0.937
52	52	0.615
53	53	0.181
54	54	0.792
55	55	0.0617
56	56	0.295
57	57	0.544
58	58	0.229
59	59	0.915
6	6	0.253
60	60	0.774
61	61	0.284
62	62	0.0639
63	63	0.642
64	64	0.45
65	65	0.932
66	66	0.0891
67	67	0.695
68	68	0.0287
69	69	0.298
7	7	0.564
70	70	0.0381
71	71	0.0611
72	72	0.833
73	73	0.125
74	74	0.078
75	75	0.476
76	76	0.0868
77	77	0.0575
78	78	0.307
79	79	0.323
8	8	0.349
80	80	0.151
81	81	0.0247
82	82	0.0711
83	83	0.0193
84	84	0.761
85	85	0.0535
86	86	0.24
87	87	0.167
88	88	0.878
89	89	0.38
9	9	0.496
90	90	0.83
91	91	0.339
92	92	0.555
93	93	0.326
94	94	0.173
95	95	0.0245
96	96	0.43
97	97	0.888
98	98	0.0363
99	99	0.00796

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12728

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000152 human renal cortical epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000152 (human renal cortical epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008318
+|DRA_sample_Accession=CAGE@SAMD00005565
+|accession_numbers=CAGE;DRX008426;DRR009298;DRZ000723;DRZ002108;DRZ012073;DRZ013458
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.85!69.70!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.84!67.85!HNF1B;;chr1:201979743..201979762,+!p1@ELF3!1.73!52.37!ELF3;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.15!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.67!203.17!HMGA2;;chr1:201979703..201979721,+!p2@ELF3!1.66!44.51!ELF3;;chr11:34642612..34642646,+!p1@EHF!1.65!43.82!EHF;;chr1:209979467..209979494,-!p1@IRF6!1.59!42.28!IRF6;;chr17:46703687..46703740,-!p1@HOXB9!1.54!33.58!HOXB9;;chr3:69811858..69811881,+!p5@MITF!1.53!33.12!MITF;;chr3:69811882..69811898,+!p6@MITF!1.41!24.72!MITF;;chr17:46682321..46682362,-!p1@HOXB6!1.40!24.26!HOXB6;;chr17:35294075..35294102,+!p1@ENST00000559335!1.40!23.95!LHX1;;chr16:86600426..86600441,+!p1@FOXC2!1.38!55.30!FOXC2;;chr12:66218183..66218209,+!p4@HMGA2!1.34!40.05!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.33!29.11!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!24.88!TFAP2A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.31!19.25!POU3F3;;chr12:66218003..66218018,+!p9@HMGA2!1.29!22.41!HMGA2;;chr17:46703826..46703845,-!p3@HOXB9!1.28!18.25!HOXB9;;chr6:10412600..10412637,-!p1@TFAP2A!1.27!29.34!TFAP2A;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.10!HOXA9;;chr12:66218378..66218401,+!p6@HMGA2!1.16!20.72!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.15!13.25!HOXA9;;chr6:10415484..10415508,-!p3@TFAP2A!1.13!12.63!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!113.37!HMGA2;;chr10:64018918..64018936,+!p2@ZNF365!1.11!12.01!ZNF365;;chr17:46622440..46622477,-!p5@HOXB2!1.08!12.48!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!1.07!12.55!HOXB2;;chr6:34204921..34204939,+!p3@HMGA1!1.06!317.53!HMGA1;;chr19:53496768..53496799,-!p1@ZNF702P!1.05!16.02!ZNF702P;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.86!BNC1;;chr12:66218443..66218461,+!p8@HMGA2!1.04!12.78!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!1.04!10.09!SOX11;;chr7:27153454..27153469,-!p2@HOXA3!1.04!9.86!HOXA3;;chr7:26191809..26191890,+!p1@NFE2L3!1.03!49.29!NFE2L3;;chr1:6479968..6479986,-!p1@HES2!0.98!8.55!HES2;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.24!HOXD8;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.86!GATA3;;chr1:24645832..24645853,+!p1@GRHL3!0.96!8.16!GRHL3;;chr7:27192185..27192209,-!p1@HOXA3!0.96!8.09!HOXA3;;chr1:209979411..209979433,-!p2@IRF6!0.94!7.78!IRF6;;chr6:34204672..34204692,+!p1@HMGA1!0.93!884.83!HMGA1;;chr2:177053386..177053402,+!p1@HOXD1!0.93!7.55!HOXD1;;chr12:66357214..66357233,+!p13@HMGA2!0.92!7.24!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!0.91!10.86!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.32!HOXB7;;chr17:46675558..46675577,-!p2@HOXB6!0.90!7.01!HOXB6;;chr7:27196217..27196246,-!p2@HOXA7!0.90!6.93!HOXA7;;chr12:66218420..66218439,+!p12@HMGA2!0.89!6.78!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!0.89!6.70!HOXA11;;chr7:27183291..27183324,-!p1@HOXA5!0.86!6.24!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!0.85!6.01!HOXA5;;chr12:66218152..66218174,+!p10@HMGA2!0.84!6.47!HMGA2;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.93!HOXA11;;chr11:65554528..65554546,+!p1@OVOL1!0.84!5.85!OVOL1;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.85!SALL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.84!5.85!POU3F3;;chr17:46622229..46622257,-!p6@HOXB2!0.83!6.78!HOXB2;;chr2:176969097..176969109,+!p3@HOXD11!0.81!5.39!HOXD11;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.62!HOXC4;;chr1:151032860..151032918,+!p1@MLLT11!0.79!66.93!MLLT11;;chr12:54393880..54393962,+!p1@HOXC9!0.79!5.24!HOXC9;;chr1:24645921..24645973,+!p2@GRHL3!0.78!5.08!GRHL3;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.08!KDM5D;;chr11:34642656..34642667,+!p2@EHF!0.77!4.85!EHF;;chr12:54378923..54378966,+!p1@HOXC10!0.77!4.85!HOXC10;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.72!FOXD1;;chr10:102505493..102505546,+!p2@PAX2!0.76!4.70!PAX2;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.22!SOX9;;chr12:96588219..96588263,+!p2@ELK3!0.75!36.51!ELK3;;chr11:65667884..65667895,-!p2@FOSL1!0.75!19.72!FOSL1;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.93!FOXQ1;;chr16:86600870..86600921,+!p2@FOXC2!0.75!4.62!FOXC2;;chr20:6748325..6748352,+!p1@BMP2!0.74!6.85!BMP2;;chr6:10412576..10412599,-!p5@TFAP2A!0.74!4.54!TFAP2A;;chr12:66358080..66358094,+!p15@HMGA2!0.74!4.47!HMGA2;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.29!KLF5;;chr10:119303078..119303169,+!p2@EMX2!0.73!4.39!EMX2;;chr12:66218469..66218477,+!p16@HMGA2!0.73!4.31!HMGA2;;chr19:53496806..53496848,-!p2@ZNF702P!0.71!6.47!ZNF702P;;chr5:2751762..2751784,-!p1@IRX2!0.71!4.16!IRX2;;chr17:46703942..46703964,-!p4@HOXB9!0.71!4.08!HOXB9;;chr3:5021268..5021282,+!p4@BHLHE40!0.70!8.78!BHLHE40;;chr21:38071430..38071456,+!p1@SIM2!0.70!4.00!SIM2;;chr6:21597765..21597779,+!p2@SOX4!0.69!36.27!SOX4;;chr3:141043020..141043049,+!p17@ZBTB38!0.69!3.93!ZBTB38;;chr7:28448965..28448994,+!p2@CREB5!0.68!15.02!CREB5;;chr7:27213893..27213954,-!p1@HOXA10!0.68!3.77!HOXA10;;chr12:80084303..80084332,-!p1@PAWR!0.67!25.03!PAWR;;chr5:72744445..72744466,-!p2@FOXD1!0.67!6.62!FOXD1;;chr11:32457075..32457095,-!p1@WT1!0.67!3.70!WT1;;chr12:80084737..80084763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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11596-120H3
 |is_a=EFO:0002091;;FF:0000152
 |is_obsolete=
-|library_ids=CNhs12728
+|library_id=CNhs12728
+|library_id_phase_based=2:CNhs12728
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11596
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11596
 |name=Renal Cortical Epithelial Cells, donor2
 |namespace=FANTOM5
@@ Line 47: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12728,LSID960,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS008318
-|accession_numbers=DRX008426;DRR009298;DRZ000723;DRZ002108;CAGE
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 }}

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FF:11596-120H3: Difference between revisions

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Latest revision as of 18:11, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0