FF:10496-107C1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005693 | ||
|accession_numbers=CAGE;DRX007834;DRR008706;DRZ000131;DRZ001516 | |accession_numbers=CAGE;DRX007834;DRR008706;DRZ000131;DRZ001516;DRZ011481;DRZ012866 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003928,UBERON:0010317,UBERON:0002294,UBERON:0001173,UBERON:0002423 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003928,UBERON:0010317,UBERON:0002294,UBERON:0001173,UBERON:0002423 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
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L2!0.77!4.83!GRHL2;;chr3:169381420..169381535,-!p1@MECOM!0.76!5.73!MECOM;;chr5:43120995..43121052,+!p1@ZNF131!0.75!25.78!ZNF131;;chr2:122042770..122042785,-!p1@TFCP2L1!0.75!4.65!TFCP2L1;;chr3:25470062..25470084,+!p4@RARB!0.75!4.65!RARB;;chr14:38064590..38064606,-!p2@FOXA1!0.75!4.65!FOXA1;;chr1:246729544..246729572,-!p1@TFB2M!0.74!49.05!TFB2M;;chr1:164528410..164528428,+!p1@PBX1!0.74!37.06!PBX1;;chr3:71632864..71632885,-!p4@FOXP1!0.74!16.83!FOXP1;;chr17:79881332..79881348,-!p3@MAFG!0.74!6.80!MAFG;;chr3:69915385..69915438,+!p3@MITF!0.74!4.48!MITF;;chr14:105935576..105935594,+!p11@MTA1!0.74!4.48!MTA1;;chr16:1429627..1429662,-!p2@UNKL!0.73!13.96!UNKL;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.06!EPAS1;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.62!IRX3;;chr5:137804405..137804444,+!p3@EGR1!0.72!5.19!EGR1;;chr14:38064307..38064323,-!p3@FOXA1!0.72!4.30!FOXA1;;chr3:141087562..141087594,+!p12@ZBTB38!0.72!4.30!ZBTB38;;chr3:69915369..69915381,+!p4@MITF!0.72!4.30!MITF;;chr1:10856639..10856662,-!p2@CASZ1!0.72!4.30!CASZ1;;chr1:164600166..164600175,+!p47@PBX1!0.72!4.30!PBX1;;chr4:87857474..87857489,+!p7@AFF1!0.71!7.70!AFF1;;chr13:41593493..41593506,-!p8@ELF1!0.71!4.12!ELF1;;chr21:38071430..38071456,+!p1@SIM2!0.71!4.12!SIM2;;chr19:57791328..57791377,+!p2@ZNF460!0.70!54.78!ZNF460;;chr2:238600933..238600985,+!p3@LRRFIP1!0.70!24.70!LRRFIP1;;chr19:53360870..53360873,-!p1@ZNF468!0.70!16.47!ZNF468;;chr3:141121164..141121249,+!p1@ZBTB38!0.69!76.98!ZBTB38;;chr5:76383133..76383186,-!p2@ZBED3!0.69!8.59!ZBED3;;chr15:96875657..96875760,+!p14@NR2F2!0.69!6.80!NR2F2;;chr18:45457909..45457939,-!p8@SMAD2!0.69!5.01!SMAD2;;chr6:126102254..126102289,+!p5@NCOA7!0.68!11.82!NCOA7;;chr5:76383070..76383117,-!p3@ZBED3!0.68!8.41!ZBED3;;chr13:73636252..73636307,+!p2@KLF5!0.68!4.48!KLF5;;chr11:64073022..64073056,+!p1@ESRRA!0.67!50.30!ESRRA;;chr12:27485762..27485776,+!p3@ARNTL2!0.67!10.92!ARNTL2;;chr14:24630902..24630948,+!p2@IRF9!0.67!4.65!IRF9;;chr1:61548225..61548299,+!p1@NFIA!0.66!54.96!NFIA;;chr5:137804484..137804498,+!p2@EGR1!0.66!16.29!EGR1;;chr5:174151553..174151610,+!p1@MSX2!0.66!6.44!MSX2;;chr13:73636516..73636532,+!p3@KLF5!0.66!4.12!KLF5;;chr8:76319850..76319870,+!p4@HNF4G!0.66!3.58!HNF4G;;chr8:81787006..81787031,-!p2@ZNF704!0.66!3.58!ZNF704;;chr3:23986762..23986821,+!p1@NR1D2!0.65!62.48!NR1D2;;chr1:153939955..153940009,+!p2@CREB3L4!0.65!8.95!CREB3L4;;chr9:4300016..4300039,-!p2@GLIS3!0.65!6.44!GLIS3;;chr17:41622925..41622976,-!p3@ETV4!0.65!5.55!ETV4;;chr15:43663214..43663261,-!p@chr15:43663214..43663261,-!0.64!22.38!ZSCAN29;;chr9:4299979..4299996,-!p3@GLIS3!0.64!5.91!GLIS3;;chr17:41622765..41622821,-!p2@ETV4!0.64!5.55!ETV4;;chr12:6798731..6798751,-!p4@ZNF384!0.64!5.55!ZNF384;;chr13:100634130..100634143,+!p3@ZIC2!0.64!3.40!ZIC2;;chr14:105935426..105935440,+!p9@MTA1!0.64!3.40!MTA1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.64!3.40!ZBTB7C;;chr6:10419824..10419840,-!p9@TFAP2A!0.64!3.40!TFAP2A;;chr7:27190547..27190591,-!p1@HOXA6!0.64!3.40!HOXA6;;chr20:18038486..18038520,-!p2@OVOL2!0.64!3.40!OVOL2;;chr4:149363475..149363492,-!p2@NR3C2!0.64!3.40!NR3C2;;chr5:16465902..16465917,-!p1@ZNF622!0.63!92.20!ZNF622;;chr3:44754126..44754171,+!p1@ZNF502!0.63!9.13!ZNF502;;chr3:24536253..24536328,-!p1@THRB!0.63!6.80!THRB;;chr8:128750175..128750201,+!p8@MYC!0.63!6.27!MYC;;chr2:28618532..28618610,+!p4@FOSL2!0.63!6.09!FOSL2;;chr8:71316428..71316459,-!p2@NCOA2!0.63!5.91!NCOA2;;chr16:30407021..30407061,+!p3@ZNF48!0.63!3.76!ZNF48;;chr6:1312155..1312187,+!p2@FOXQ1!0.63!3.22!FOXQ1;;chr11:34645791..34645836,+!p3@EHF!0.63!3.22!EHF;;chr3:128207349..128207386,-!p3@GATA2!0.63!3.22!GATA2;;chr12:80084768..80084821,-!p2@PAWR!0.62!25.96!PAWR;;chr8:123793860..123793921,+!p2@ZHX2!0.62!10.03!ZHX2;;chr5:138647473..138647476,+!p6@MATR3!0.62!9.13!MATR3;;chr8:123793959..123793977,+!p4@ZHX2!0.62!6.80!ZHX2;;chr5:72744445..72744466,-!p2@FOXD1!0.62!5.73!FOXD1;;chr1:158985493..158985535,+!p4@IFI16!0.62!5.19!IFI16;;chr20:50159198..50159299,-!p1@NFATC2!0.62!5.01!NFATC2;;chr15:35280439..35280503,-!p1@ZNF770!0.61!127.82!ZNF770;;chr19:58694421..58694485,+!p1@ZNF274!0.61!18.98!ZNF274;;chr1:91487836..91487854,-!p3@ZNF644!0.61!7.88!ZNF644;;chr6:21597600..21597664,+!p3@SOX4!0.61!5.55!SOX4;;chr1:158985469..158985489,+!p7@IFI16!0.61!3.76!IFI16;;chr17:48045917..48045977,+!p1@DLX4!0.61!3.04!DLX4;;chr6:10413188..10413249,-!p7@TFAP2A!0.61!3.04!TFAP2A;;chr1:212782094..212782109,+!p1@ATF3!0.60!99.00!ATF3;;chr17:17740287..17740307,-!p1@SREBF1!0.60!95.06!SREBF1;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.37!HIF1A;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.60!9.85!ZNF525;;chr10:35484053..35484076,+!p1@CREM!0.60!8.59!CREM;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.38!MATR3;;chr19:36706055..36706074,+!p3@ZNF146!0.59!15.93!ZNF146;;chr17:41623692..41623715,-!p1@ETV4!0.59!14.68!ETV4;;chr3:12329397..12329433,+!p2@PPARG!0.59!7.52!PPARG;;chr3:114343826..114343869,-!p4@ZBTB20!0.59!6.44!ZBTB20;;chr9:4299959..4299974,-!p4@GLIS3!0.59!5.01!GLIS3;;chr22:29196492..29196503,-!p3@XBP1!0.59!4.83!XBP1;;chr1:935496..935509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ZNF223;;chr11:62369352..62369373,-!p5@MTA2!0.22!5.01!MTA2;;chr9:32552552..32552576,-!p2@TOPORS!0.22!4.83!TOPORS;;chr1:173837488..173837526,+!p1@ZBTB37!0.22!4.48!ZBTB37;;chr18:74207147..74207183,-!p1@ZNF516!0.22!3.76!ZNF516;;chr22:50247528..50247568,+!p2@ZBED4!0.22!2.86!ZBED4;;chr2:11606283..11606289,-!p1@E2F6!0.22!2.33!E2F6;;chr6:170863353..170863368,+!p2@TBP!0.22!2.15!TBP;;chr19:12405606..12405629,-!p2@ZNF44!0.22!2.15!ZNF44;;chr3:71114279..71114308,-!p13@FOXP1!0.22!1.61!FOXP1;;chr12:6798692..6798723,-!p5@ZNF384!0.22!1.61!ZNF384;;chr1:164528911..164528940,+!p7@PBX1!0.22!1.43!PBX1;;chr1:158979680..158979683,+!p9@IFI16!0.22!1.25!IFI16;;chr10:35415951..35415975,+!p8@CREM!0.22!1.25!CREM;;chr11:64764435..64764449,-!p1@BATF2!0.22!1.25!BATF2;;chr15:71184837..71184877,-!p2@THAP10!0.22!1.25!THAP10;;chr8:86089341..86089362,+!p5@E2F5!0.22!1.25!E2F5;;chr6:36355513..36355578,-!p2@ETV7!0.22!1.07!ETV7;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.22!1.07!PRDM11;;chr11:706938..707008,-!p3@DEAF1!0.22!1.07!DEAF1;;chr3:5020582..5020599,+!p10@BHLHE40!0.22!0.90!BHLHE40;;chr1:78444738..78444773,-!p1@FUBP1!0.21!158.25!FUBP1;;chr1:26496382..26496457,+!p1@ZNF593!0.21!89.15!ZNF593;;chr16:31128978..31129002,+!p1@KAT8!0.21!71.43!KAT8;;chr18:32924372..32924430,-!p1@ZNF24!0.21!44.58!ZNF24;;chr10:51565239..51565263,+!p2@NCOA4!0.21!34.01!NCOA4;;chr2:242576460..242576600,-!p1@THAP4!0.21!21.84!THAP4;;chr16:3162557..3162600,+!p1@ZNF205!0.21!11.82!ZNF205;;chr1:247267618..247267674,-!p1@ZNF669!0.21!11.10!ZNF669;;chr19:55987963..55987996,+!p1@ZNF628!0.21!10.38!ZNF628;;chr8:144349606..144349656,+!p1@GLI4!0.21!10.03!GLI4;;chr4:140005341..140005411,-!p3@ELF2!0.21!7.16!ELF2;;chr5:34929629..34929671,+!p2@DNAJC21!0.21!6.44!DNAJC21;;chr17:56065729..56065781,-!p2@VEZF1!0.21!5.55!VEZF1;;chr19:58331073..58331084,+!p3@ZNF587!0.21!4.83!ZNF587;;chr7:148581327..148581347,-!p2@EZH2!0.21!4.30!EZH2;;chr8:123794102..123794160,+!p3@ZHX2!0.21!3.22!ZHX2;;chr16:4323015..4323067,-!p2@TFAP4!0.21!3.22!TFAP4;;chr19:47616992..47617011,-!p4@ZC3H4!0.21!2.33!ZC3H4;;chr20:33413372..33413389,-!p2@NCOA6!0.21!1.97!NCOA6;;chr6:170863498..170863514,+!p3@TBP!0.21!1.79!TBP;;chr4:87857433..87857472,+!p9@AFF1!0.21!1.79!AFF1;;chr1:10754477..10754517,-!p1@CASZ1!0.21!1.61!CASZ1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.21!1.61!PCBP2;;chr3:71632743..71632756,-!p16@FOXP1!0.21!1.43!FOXP1;;chr10:98592776..98592796,+!p4@LCOR!0.21!1.25!LCOR;;chr5:142782823..142782854,-!p3@NR3C1!0.21!1.25!NR3C1;;chr15:37392703..37392717,-!p8@MEIS2!0.21!1.25!MEIS2;;chr16:3333375..3333388,+!p3@ZNF263!0.21!1.25!ZNF263;;chr17:42297000..42297022,-!p15@UBTF!0.21!1.25!UBTF;;chr17:42298386..42298397,-!p20@UBTF!0.21!0.90!UBTF;;chr1:150849208..150849217,-!p3@ARNT!0.21!0.90!ARNT;;chr7:28725715..28725727,+!p3@CREB5!0.21!0.90!CREB5;;chr9:110250697..110250738,-!p2@KLF4!0.21!0.90!KLF4;;chr6:136610911..136610990,-!p1@BCLAF1!0.20!127.28!BCLAF1;;chr10:135122380..135122458,+!p1@ZNF511!0.20!42.79!ZNF511;;chr3:33481835..33481905,-!p1@UBP1!0.20!23.99!UBP1;;chr2:174828545..174828644,-!p1@SP3!0.20!21.66!SP3;;chr7:139762641..139762768,-!p1@PARP12!0.20!19.16!PARP12;;chr16:67226019..67226127,+!p1@E2F4!0.20!18.26!E2F4;;chr1:247495140..247495177,-!p1@ZNF496!0.20!14.86!ZNF496;;chr10:38383255..38383324,+!p1@ZNF37A!0.20!12.71!ZNF37A;;chr12:125052112..125052172,-!p2@NCOR2!0.20!12.53!NCOR2;;chr10:21823128..21823216,+!p1@MLLT10!0.20!12.17!MLLT10;;chr1:167190091..167190156,+!p1@POU2F1!0.20!10.56!POU2F1;;chr12:133532864..133532899,-!p1@ZNF605!0.20!10.03!ZNF605;;chr7:64126503..64126528,+!p1@ZNF107!0.20!9.49!ZNF107;;chr4:146402997..146403020,+!p1@SMAD1!0.20!9.49!SMAD1;;chr19:56826201..56826247,-!p1@ZSCAN5A!0.20!8.77!ZSCAN5A;;chr19:50529247..50529296,+!p1@ZNF473!0.20!8.59!ZNF473;;chr4:87928413..87928433,+!p3@AFF1!0.20!8.23!AFF1;; | |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.66!455.43!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!2.04!171.32!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!1.74!53.35!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.71!49.95!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.70!48.87!GRHL2;;chr14:38064429..38064486,-!p1@FOXA1!1.49!29.72!FOXA1;;chr5:134369879..134369898,-!p2@PITX1!1.46!27.93!PITX1;;chr2:46524897..46524911,+!p2@EPAS1!1.41!67.67!EPAS1;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.98!PITX1;;chr13:73633131..73633149,+!p1@KLF5!1.38!236.49!KLF5;;chr10:8095593..8095625,+!p3@GATA3!1.37!26.50!GATA3;;chr6:28321909..28321965,-!p3@ZNF323!1.37!22.20!ZNF323;;chr7:28448965..28448994,+!p2@CREB5!1.36!76.08!CREB5;;chr8:76319876..76319926,+!p1@HNF4G!1.34!20.95!HNF4G;;chr13:41593425..41593480,-!p1@ELF1!1.30!118.51!ELF1;;chr3:141087339..141087387,+!p2@ZBTB38!1.24!163.45!ZBTB38;;chr3:141087393..141087426,+!p3@ZBTB38!1.23!62.84!ZBTB38;;chr6:28321971..28321995,-!p1@ZNF323!1.23!16.11!ZNF323;;chr18:55102598..55102623,+!p1@ONECUT2!1.23!15.93!ONECUT2;;chrY:21906594..21906622,-!p1@KDM5D!1.20!14.86!KDM5D;;chr6:126240380..126240430,+!p2@NCOA7!1.19!37.42!NCOA7;;chr11:61520075..61520136,+!p1@C11orf9!1.19!30.61!C11orf9;;chr17:46682321..46682362,-!p1@HOXB6!1.19!14.32!HOXB6;;chr19:48774586..48774670,+!p1@ZNF114!1.18!17.90!ZNF114;;chr1:151804244..151804310,-!p1@RORC!1.18!14.14!RORC;;chr1:164600184..164600191,+!p38@PBX1!1.18!14.14!PBX1;;chr7:97840743..97840786,+!p1@BHLHA15!1.18!14.14!BHLHA15;;chr1:42801540..42801562,-!p4@FOXJ3!1.18!13.96!FOXJ3;;chr12:52445218..52445237,+!p1@NR4A1!1.15!165.95!NR4A1;;chr17:46688334..46688385,-!p1@HOXB7!1.14!18.62!HOXB7;;chr6:85473156..85473210,-!p2@TBX18!1.12!15.04!TBX18;;chr6:10415276..10415341,-!p2@TFAP2A!1.12!14.86!TFAP2A;;chr7:1577111..1577132,+!p4@MAFK!1.12!13.78!MAFK;;chr8:102504690..102504704,+!p3@GRHL2!1.12!12.17!GRHL2;;chr12:80084737..80084763,-!p3@PAWR!1.11!44.76!PAWR;;chrX:30327504..30327509,-!p1@NR0B1!1.11!11.82!NR0B1;;chr6:126240442..126240459,+!p4@NCOA7!1.10!14.68!NCOA7;;chrY:2803415..2803468,+!p1@ZFY!1.10!11.64!ZFY;;chr10:97889464..97889494,+!p3@ZNF518A!1.09!21.12!ZNF518A;;chr1:164528687..164528711,+!p6@PBX1!1.09!13.25!PBX1;;chr14:105935396..105935413,+!p4@MTA1!1.09!11.28!MTA1;;chr15:96869511..96869525,+!p16@NR2F2!1.05!11.46!NR2F2;;chr18:55102628..55102646,+!p2@ONECUT2!1.05!10.20!ONECUT2;;chr1:91487553..91487612,-!p1@ZNF644!1.04!169.53!ZNF644;;chr1:935398..935465,-!p2@HES4!1.04!20.95!HES4;;chr6:34524093..34524135,-!p1@SPDEF!1.04!10.03!SPDEF;;chr3:141121847..141121868,+!p5@ZBTB38!1.02!14.50!ZBTB38;;chr14:37131058..37131139,+!p1@PAX9!1.02!9.49!PAX9;;chr9:4300050..4300118,-!p1@GLIS3!1.01!60.87!GLIS3;;chr3:12330560..12330579,+!p1@PPARG!1.01!10.74!PPARG;;chr8:10588010..10588030,-!p1@SOX7!1.01!9.31!SOX7;;chr17:36105042..36105060,-!p1@HNF1B!0.99!8.77!HNF1B;;chr3:25469724..25469773,+!p1@RARB!0.98!12.53!RARB;;chr11:34642656..34642667,+!p2@EHF!0.98!8.59!EHF;;chr1:209979467..209979494,-!p1@IRF6!0.97!9.31!IRF6;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.38!TFAP2C;;chr20:22566120..22566136,-!p4@FOXA2!0.94!7.70!FOXA2;;chr3:193853927..193853944,+!p1@HES1!0.93!252.78!HES1;;chr3:168864315..168864339,-!p2@MECOM!0.93!12.53!MECOM;;chr7:73038839..73038862,-!p1@MLXIPL!0.93!7.52!MLXIPL;;chr2:157189180..157189290,-!p1@NR4A2!0.92!40.10!NR4A2;;chr1:935467..935484,-!p1@HES4!0.91!32.94!HES4;;chr3:25470156..25470227,+!p2@RARB!0.89!6.80!RARB;;chr4:57547454..57547469,-!p1@HOPX!0.89!6.80!HOPX;;chr17:41623259..41623278,-!p7@ETV4!0.88!7.88!ETV4;;chr19:33865009..33865090,+!p3@CEBPG!0.87!8.77!CEBPG;;chr7:156803329..156803362,-!p1@MNX1!0.87!6.44!MNX1;;chr7:28448995..28449011,+!p4@CREB5!0.86!8.95!CREB5;;chr20:18038521..18038571,-!p1@OVOL2!0.86!6.27!OVOL2;;chr17:36105074..36105086,-!p2@HNF1B!0.86!6.27!HNF1B;;chr19:33864600..33864732,+!p1@CEBPG!0.85!180.27!CEBPG;;chr2:101436564..101436647,+!p1@NPAS2!0.85!133.37!NPAS2;;chr19:36706024..36706049,+!p1@ZNF146!0.85!116.01!ZNF146;;chr7:113726357..113726443,+!p1@FOXP2!0.85!10.92!FOXP2;;chr6:10419768..10419819,-!p6@TFAP2A!0.85!6.09!TFAP2A;;chr6:21597765..21597779,+!p2@SOX4!0.84!51.38!SOX4;;chr10:51572408..51572454,+!p3@NCOA4!0.84!37.24!NCOA4;;chrX:131623044..131623089,-!p1@MBNL3!0.84!26.32!MBNL3;;chr6:126240356..126240379,+!p7@NCOA7!0.84!7.34!NCOA7;;chr16:30537839..30537929,-!p1@ZNF768!0.83!38.67!ZNF768;;chr14:62162285..62162296,+!p3@HIF1A!0.83!32.04!HIF1A;;chr16:54320101..54320125,-!p4@IRX3!0.82!8.23!IRX3;;chr6:126240463..126240489,+!p6@NCOA7!0.82!6.44!NCOA7;;chr17:46703942..46703964,-!p4@HOXB9!0.82!5.55!HOXB9;;chr14:64970670..64970712,-!p3@ZBTB25!0.80!12.17!ZBTB25;;chr1:91487516..91487528,-!p4@ZNF644!0.80!11.99!ZNF644;;chr1:203764633..203764674,+!p2@ZC3H11A!0.80!8.95!ZC3H11A;;chr6:126102292..126102329,+!p3@NCOA7!0.79!18.26!NCOA7;;chr6:28048343..28048354,+!p1@ZNF165!0.79!5.19!ZNF165;;chr19:36705998..36706021,+!p2@ZNF146!0.77!77.87!ZNF146;;chr19:59084872..59084920,-!p2@MZF1!0.77!13.96!MZF1;;chr6:10415484..10415508,-!p3@TFAP2A!0.77!4.83!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.77!4.83!GRHL2;;chr3:169381420..169381535,-!p1@MECOM!0.76!5.73!MECOM;;chr5:43120995..43121052,+!p1@ZNF131!0.75!25.78!ZNF131;;chr2:122042770..122042785,-!p1@TFCP2L1!0.75!4.65!TFCP2L1;;chr3:25470062..25470084,+!p4@RARB!0.75!4.65!RARB;;chr14:38064590..38064606,-!p2@FOXA1!0.75!4.65!FOXA1;;chr1:246729544..246729572,-!p1@TFB2M!0.74!49.05!TFB2M;;chr1:164528410..164528428,+!p1@PBX1!0.74!37.06!PBX1;;chr3:71632864..71632885,-!p4@FOXP1!0.74!16.83!FOXP1;;chr17:79881332..79881348,-!p3@MAFG!0.74!6.80!MAFG;;chr3:69915385..69915438,+!p3@MITF!0.74!4.48!MITF;;chr14:105935576..105935594,+!p11@MTA1!0.74!4.48!MTA1;;chr16:1429627..1429662,-!p2@UNKL!0.73!13.96!UNKL;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.06!EPAS1;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.62!IRX3;;chr5:137804405..137804444,+!p3@EGR1!0.72!5.19!EGR1;;chr14:38064307..38064323,-!p3@FOXA1!0.72!4.30!FOXA1;;chr3:141087562..141087594,+!p12@ZBTB38!0.72!4.30!ZBTB38;;chr3:69915369..69915381,+!p4@MITF!0.72!4.30!MITF;;chr1:10856639..10856662,-!p2@CASZ1!0.72!4.30!CASZ1;;chr1:164600166..164600175,+!p47@PBX1!0.72!4.30!PBX1;;chr4:87857474..87857489,+!p7@AFF1!0.71!7.70!AFF1;;chr13:41593493..41593506,-!p8@ELF1!0.71!4.12!ELF1;;chr21:38071430..38071456,+!p1@SIM2!0.71!4.12!SIM2;;chr19:57791328..57791377,+!p2@ZNF460!0.70!54.78!ZNF460;;chr2:238600933..238600985,+!p3@LRRFIP1!0.70!24.70!LRRFIP1;;chr19:53360870..53360873,-!p1@ZNF468!0.70!16.47!ZNF468;;chr3:141121164..141121249,+!p1@ZBTB38!0.69!76.98!ZBTB38;;chr5:76383133..76383186,-!p2@ZBED3!0.69!8.59!ZBED3;;chr15:96875657..96875760,+!p14@NR2F2!0.69!6.80!NR2F2;;chr18:45457909..45457939,-!p8@SMAD2!0.69!5.01!SMAD2;;chr6:126102254..126102289,+!p5@NCOA7!0.68!11.82!NCOA7;;chr5:76383070..76383117,-!p3@ZBED3!0.68!8.41!ZBED3;;chr13:73636252..73636307,+!p2@KLF5!0.68!4.48!KLF5;;chr11:64073022..64073056,+!p1@ESRRA!0.67!50.30!ESRRA;;chr12:27485762..27485776,+!p3@ARNTL2!0.67!10.92!ARNTL2;;chr14:24630902..24630948,+!p2@IRF9!0.67!4.65!IRF9;;chr1:61548225..61548299,+!p1@NFIA!0.66!54.96!NFIA;;chr5:137804484..137804498,+!p2@EGR1!0.66!16.29!EGR1;;chr5:174151553..174151610,+!p1@MSX2!0.66!6.44!MSX2;;chr13:73636516..73636532,+!p3@KLF5!0.66!4.12!KLF5;;chr8:76319850..76319870,+!p4@HNF4G!0.66!3.58!HNF4G;;chr8:81787006..81787031,-!p2@ZNF704!0.66!3.58!ZNF704;;chr3:23986762..23986821,+!p1@NR1D2!0.65!62.48!NR1D2;;chr1:153939955..153940009,+!p2@CREB3L4!0.65!8.95!CREB3L4;;chr9:4300016..4300039,-!p2@GLIS3!0.65!6.44!GLIS3;;chr17:41622925..41622976,-!p3@ETV4!0.65!5.55!ETV4;;chr15:43663214..43663261,-!p@chr15:43663214..43663261,-!0.64!22.38!ZSCAN29;;chr9:4299979..4299996,-!p3@GLIS3!0.64!5.91!GLIS3;;chr17:41622765..41622821,-!p2@ETV4!0.64!5.55!ETV4;;chr12:6798731..6798751,-!p4@ZNF384!0.64!5.55!ZNF384;;chr13:100634130..100634143,+!p3@ZIC2!0.64!3.40!ZIC2;;chr14:105935426..105935440,+!p9@MTA1!0.64!3.40!MTA1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.64!3.40!ZBTB7C;;chr6:10419824..10419840,-!p9@TFAP2A!0.64!3.40!TFAP2A;;chr7:27190547..27190591,-!p1@HOXA6!0.64!3.40!HOXA6;;chr20:18038486..18038520,-!p2@OVOL2!0.64!3.40!OVOL2;;chr4:149363475..149363492,-!p2@NR3C2!0.64!3.40!NR3C2;;chr5:16465902..16465917,-!p1@ZNF622!0.63!92.20!ZNF622;;chr3:44754126..44754171,+!p1@ZNF502!0.63!9.13!ZNF502;;chr3:24536253..24536328,-!p1@THRB!0.63!6.80!THRB;;chr8:128750175..128750201,+!p8@MYC!0.63!6.27!MYC;;chr2:28618532..28618610,+!p4@FOSL2!0.63!6.09!FOSL2;;chr8:71316428..71316459,-!p2@NCOA2!0.63!5.91!NCOA2;;chr16:30407021..30407061,+!p3@ZNF48!0.63!3.76!ZNF48;;chr6:1312155..1312187,+!p2@FOXQ1!0.63!3.22!FOXQ1;;chr11:34645791..34645836,+!p3@EHF!0.63!3.22!EHF;;chr3:128207349..128207386,-!p3@GATA2!0.63!3.22!GATA2;;chr12:80084768..80084821,-!p2@PAWR!0.62!25.96!PAWR;;chr8:123793860..123793921,+!p2@ZHX2!0.62!10.03!ZHX2;;chr5:138647473..138647476,+!p6@MATR3!0.62!9.13!MATR3;;chr8:123793959..123793977,+!p4@ZHX2!0.62!6.80!ZHX2;;chr5:72744445..72744466,-!p2@FOXD1!0.62!5.73!FOXD1;;chr1:158985493..158985535,+!p4@IFI16!0.62!5.19!IFI16;;chr20:50159198..50159299,-!p1@NFATC2!0.62!5.01!NFATC2;;chr15:35280439..35280503,-!p1@ZNF770!0.61!127.82!ZNF770;;chr19:58694421..58694485,+!p1@ZNF274!0.61!18.98!ZNF274;;chr1:91487836..91487854,-!p3@ZNF644!0.61!7.88!ZNF644;;chr6:21597600..21597664,+!p3@SOX4!0.61!5.55!SOX4;;chr1:158985469..158985489,+!p7@IFI16!0.61!3.76!IFI16;;chr17:48045917..48045977,+!p1@DLX4!0.61!3.04!DLX4;;chr6:10413188..10413249,-!p7@TFAP2A!0.61!3.04!TFAP2A;;chr1:212782094..212782109,+!p1@ATF3!0.60!99.00!ATF3;;chr17:17740287..17740307,-!p1@SREBF1!0.60!95.06!SREBF1;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.37!HIF1A;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.60!9.85!ZNF525;;chr10:35484053..35484076,+!p1@CREM!0.60!8.59!CREM;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.38!MATR3;;chr19:36706055..36706074,+!p3@ZNF146!0.59!15.93!ZNF146;;chr17:41623692..41623715,-!p1@ETV4!0.59!14.68!ETV4;;chr3:12329397..12329433,+!p2@PPARG!0.59!7.52!PPARG;;chr3:114343826..114343869,-!p4@ZBTB20!0.59!6.44!ZBTB20;;chr9:4299959..4299974,-!p4@GLIS3!0.59!5.01!GLIS3;;chr22:29196492..29196503,-!p3@XBP1!0.59!4.83!XBP1;;chr1:935496..935509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| ||
Line 40: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bile%2520duct%2520carcinoma%2520cell%2520line%253aTFK-1.CNhs11265.10496-107C1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10496-107C1 | |id=FF:10496-107C1 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0103910 | |is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0103910 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11265 | |library_id=CNhs11265 | ||
|library_id_phase_based=2:CNhs11265 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10496 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10496 | |||
|name=bile duct carcinoma cell line:TFK-1 | |name=bile duct carcinoma cell line:TFK-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11265,LSID758,release008,COMPLETED | |profile_hcage=CNhs11265,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 88: | Line 100: | ||
|top_motifs=SNAI1..3:2.29317703424;ZEB1:2.18394540214;ELK1,4_GABP{A,B1}:1.83402341227;PITX1..3:1.77600031893;VSX1,2:1.70590496559;NR6A1:1.63658508663;MYOD1:1.56731643121;NFE2L2:1.42365070059;NKX6-1,2:1.40551915048;HNF1A:1.40339137088;FOXP1:1.35077099019;ADNP_IRX_SIX_ZHX:1.32521292082;LMO2:1.28615482236;FOXD3:1.28449804244;FOXQ1:1.23519043593;bHLH_family:1.22386139207;TOPORS:1.16150417834;NKX2-3_NKX2-5:1.086276858;DBP:1.077620865;FOX{I1,J2}:1.05660862875;RORA:1.04326512439;ESRRA:1.02243901516;HNF4A_NR2F1,2:0.992426401185;TBX4,5:0.939549836906;AIRE:0.937000454679;ONECUT1,2:0.907256317365;CEBPA,B_DDIT3:0.797155865938;STAT2,4,6:0.793359054394;NR1H4:0.785564711325;YY1:0.758154530866;FOXL1:0.757994234242;NKX3-2:0.729827847848;IRF7:0.717048400212;ZBTB16:0.700679341384;HOX{A6,A7,B6,B7}:0.698466919506;CDC5L:0.688178142792;ATF4:0.685406465561;PDX1:0.678105942803;NKX2-1,4:0.661879707602;ATF5_CREB3:0.657296742356;IKZF1:0.653300183755;TEAD1:0.643510964458;NFE2:0.600367262712;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.597088622332;NKX3-1:0.579560251113;CRX:0.569736689415;PAX4:0.550329469876;FOXA2:0.54538033544;TLX1..3_NFIC{dimer}:0.539557506702;HMGA1,2:0.525871800782;NR5A1,2:0.525162581545;ATF6:0.517953172859;NFIL3:0.466477428082;FOX{F1,F2,J1}:0.449101392069;FOXN1:0.445144390247;E2F1..5:0.444545970457;POU5F1:0.440177950662;HIF1A:0.400491633595;FOXP3:0.352302546848;CREB1:0.341725541629;CUX2:0.334399944453;PRRX1,2:0.298832204255;NKX2-2,8:0.29522774658;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.288292832808;HAND1,2:0.280730459894;SOX2:0.263527294682;HOX{A5,B5}:0.251779433565;BACH2:0.250327659037;HLF:0.246363574725;FOS_FOS{B,L1}_JUN{B,D}:0.240636349928;CDX1,2,4:0.233814586261;OCT4_SOX2{dimer}:0.233166693886;RBPJ:0.230781917007;T:0.230521244759;BREu{core}:0.228118611059;ESR1:0.2132546734;STAT5{A,B}:0.206580669738;ZNF384:0.189661636696;ELF1,2,4:0.154340131537;JUN:0.138037437127;POU2F1..3:0.103010929608;LEF1_TCF7_TCF7L1,2:0.0919751284217;PAX2:0.0890217325854;SOX5:0.0884490131732;EVI1:0.0601816284198;TFAP2{A,C}:0.054875704414;POU1F1:0.0531654290796;EBF1:0.052339221548;IRF1,2:0.0135326206836;FOSL2:-0.00966849738292;PBX1:-0.029706447419;TP53:-0.0363723897668;TEF:-0.044732037606;ATF2:-0.0462185036019;MYB:-0.0506445085734;EP300:-0.0584361916318;TFDP1:-0.0769340969864;MED-1{core}:-0.0879985065114;ZNF143:-0.126602577106;ARID5B:-0.151892759655;PAX8:-0.153486474173;LHX3,4:-0.165478241755;ALX1:-0.165894918951;GFI1B:-0.19534873612;IKZF2:-0.209243584696;NFY{A,B,C}:-0.218850503925;NFKB1_REL_RELA:-0.220038751678;AHR_ARNT_ARNT2:-0.229155224106;FOXO1,3,4:-0.230504276722;ZFP161:-0.230662169973;FOX{D1,D2}:-0.232817721831;RXRA_VDR{dimer}:-0.242272136303;TAL1_TCF{3,4,12}:-0.245568817415;MEF2{A,B,C,D}:-0.248544980689;HOXA9_MEIS1:-0.26688541974;RFX2..5_RFXANK_RFXAP:-0.280594962855;ALX4:-0.306872992498;MYBL2:-0.324707836348;DMAP1_NCOR{1,2}_SMARC:-0.332311712463;TFAP2B:-0.333414875306;BPTF:-0.339181928281;MTE{core}:-0.341402036941;UFEwm:-0.343477718263;PAX1,9:-0.344899089708;MAFB:-0.360421172229;NRF1:-0.375791798538;POU6F1:-0.414322147784;SOX{8,9,10}:-0.431243783894;ZIC1..3:-0.433922585509;TBP:-0.444152666349;PPARG:-0.458286401836;SPI1:-0.476662048458;HIC1:-0.491921193162;ETS1,2:-0.498832067373;KLF4:-0.500736085038;ZBTB6:-0.518383903048;SPIB:-0.533018556533;HOX{A4,D4}:-0.546004948351;GATA6:-0.560341037103;HSF1,2:-0.569142071581;GFI1:-0.579879661737;FOXM1:-0.581552136413;MZF1:-0.586032485665;MTF1:-0.614888814814;RREB1:-0.636530466055;REST:-0.636860275761;PRDM1:-0.671587616343;TFCP2:-0.691831970329;AR:-0.693785649115;GTF2I:-0.713495403371;NANOG:-0.718650781328;PAX3,7:-0.723017091361;PAX5:-0.738683976096;NR3C1:-0.753958843546;SREBF1,2:-0.773291932965;ZNF423:-0.79170724279;PATZ1:-0.81866235261;MAZ:-0.843364516731;GZF1:-0.862730882049;GLI1..3:-0.863197488852;GTF2A1,2:-0.886313643298;GATA4:-0.890523516164;RUNX1..3:-0.927458262231;SPZ1:-0.931127916248;ZNF148:-0.947849418047;NFATC1..3:-0.950036570261;NHLH1,2:-0.960488861078;EN1,2:-0.967378423821;TFAP4:-0.976405851936;TLX2:-0.977237166537;POU3F1..4:-1.01745441366;XBP1:-1.03023618857;NFE2L1:-1.03789982769;RFX1:-1.03957702299;MYFfamily:-1.04576889074;TGIF1:-1.05086926451;SOX17:-1.07856093184;HMX1:-1.10655053092;SRF:-1.13354712882;HBP1_HMGB_SSRP1_UBTF:-1.1348823708;NFIX:-1.16280645327;GCM1,2:-1.20219810409;ZNF238:-1.24714759602;SP1:-1.26984614729;STAT1,3:-1.27579180494;EGR1..3:-1.27763627983;XCPE1{core}:-1.33783272485;NANOG{mouse}:-1.4316040034;RXR{A,B,G}:-1.51211948214;HES1:-1.52760506476;PAX6:-1.64974383921;SMAD1..7,9:-2.37732127928 | |top_motifs=SNAI1..3:2.29317703424;ZEB1:2.18394540214;ELK1,4_GABP{A,B1}:1.83402341227;PITX1..3:1.77600031893;VSX1,2:1.70590496559;NR6A1:1.63658508663;MYOD1:1.56731643121;NFE2L2:1.42365070059;NKX6-1,2:1.40551915048;HNF1A:1.40339137088;FOXP1:1.35077099019;ADNP_IRX_SIX_ZHX:1.32521292082;LMO2:1.28615482236;FOXD3:1.28449804244;FOXQ1:1.23519043593;bHLH_family:1.22386139207;TOPORS:1.16150417834;NKX2-3_NKX2-5:1.086276858;DBP:1.077620865;FOX{I1,J2}:1.05660862875;RORA:1.04326512439;ESRRA:1.02243901516;HNF4A_NR2F1,2:0.992426401185;TBX4,5:0.939549836906;AIRE:0.937000454679;ONECUT1,2:0.907256317365;CEBPA,B_DDIT3:0.797155865938;STAT2,4,6:0.793359054394;NR1H4:0.785564711325;YY1:0.758154530866;FOXL1:0.757994234242;NKX3-2:0.729827847848;IRF7:0.717048400212;ZBTB16:0.700679341384;HOX{A6,A7,B6,B7}:0.698466919506;CDC5L:0.688178142792;ATF4:0.685406465561;PDX1:0.678105942803;NKX2-1,4:0.661879707602;ATF5_CREB3:0.657296742356;IKZF1:0.653300183755;TEAD1:0.643510964458;NFE2:0.600367262712;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.597088622332;NKX3-1:0.579560251113;CRX:0.569736689415;PAX4:0.550329469876;FOXA2:0.54538033544;TLX1..3_NFIC{dimer}:0.539557506702;HMGA1,2:0.525871800782;NR5A1,2:0.525162581545;ATF6:0.517953172859;NFIL3:0.466477428082;FOX{F1,F2,J1}:0.449101392069;FOXN1:0.445144390247;E2F1..5:0.444545970457;POU5F1:0.440177950662;HIF1A:0.400491633595;FOXP3:0.352302546848;CREB1:0.341725541629;CUX2:0.334399944453;PRRX1,2:0.298832204255;NKX2-2,8:0.29522774658;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.288292832808;HAND1,2:0.280730459894;SOX2:0.263527294682;HOX{A5,B5}:0.251779433565;BACH2:0.250327659037;HLF:0.246363574725;FOS_FOS{B,L1}_JUN{B,D}:0.240636349928;CDX1,2,4:0.233814586261;OCT4_SOX2{dimer}:0.233166693886;RBPJ:0.230781917007;T:0.230521244759;BREu{core}:0.228118611059;ESR1:0.2132546734;STAT5{A,B}:0.206580669738;ZNF384:0.189661636696;ELF1,2,4:0.154340131537;JUN:0.138037437127;POU2F1..3:0.103010929608;LEF1_TCF7_TCF7L1,2:0.0919751284217;PAX2:0.0890217325854;SOX5:0.0884490131732;EVI1:0.0601816284198;TFAP2{A,C}:0.054875704414;POU1F1:0.0531654290796;EBF1:0.052339221548;IRF1,2:0.0135326206836;FOSL2:-0.00966849738292;PBX1:-0.029706447419;TP53:-0.0363723897668;TEF:-0.044732037606;ATF2:-0.0462185036019;MYB:-0.0506445085734;EP300:-0.0584361916318;TFDP1:-0.0769340969864;MED-1{core}:-0.0879985065114;ZNF143:-0.126602577106;ARID5B:-0.151892759655;PAX8:-0.153486474173;LHX3,4:-0.165478241755;ALX1:-0.165894918951;GFI1B:-0.19534873612;IKZF2:-0.209243584696;NFY{A,B,C}:-0.218850503925;NFKB1_REL_RELA:-0.220038751678;AHR_ARNT_ARNT2:-0.229155224106;FOXO1,3,4:-0.230504276722;ZFP161:-0.230662169973;FOX{D1,D2}:-0.232817721831;RXRA_VDR{dimer}:-0.242272136303;TAL1_TCF{3,4,12}:-0.245568817415;MEF2{A,B,C,D}:-0.248544980689;HOXA9_MEIS1:-0.26688541974;RFX2..5_RFXANK_RFXAP:-0.280594962855;ALX4:-0.306872992498;MYBL2:-0.324707836348;DMAP1_NCOR{1,2}_SMARC:-0.332311712463;TFAP2B:-0.333414875306;BPTF:-0.339181928281;MTE{core}:-0.341402036941;UFEwm:-0.343477718263;PAX1,9:-0.344899089708;MAFB:-0.360421172229;NRF1:-0.375791798538;POU6F1:-0.414322147784;SOX{8,9,10}:-0.431243783894;ZIC1..3:-0.433922585509;TBP:-0.444152666349;PPARG:-0.458286401836;SPI1:-0.476662048458;HIC1:-0.491921193162;ETS1,2:-0.498832067373;KLF4:-0.500736085038;ZBTB6:-0.518383903048;SPIB:-0.533018556533;HOX{A4,D4}:-0.546004948351;GATA6:-0.560341037103;HSF1,2:-0.569142071581;GFI1:-0.579879661737;FOXM1:-0.581552136413;MZF1:-0.586032485665;MTF1:-0.614888814814;RREB1:-0.636530466055;REST:-0.636860275761;PRDM1:-0.671587616343;TFCP2:-0.691831970329;AR:-0.693785649115;GTF2I:-0.713495403371;NANOG:-0.718650781328;PAX3,7:-0.723017091361;PAX5:-0.738683976096;NR3C1:-0.753958843546;SREBF1,2:-0.773291932965;ZNF423:-0.79170724279;PATZ1:-0.81866235261;MAZ:-0.843364516731;GZF1:-0.862730882049;GLI1..3:-0.863197488852;GTF2A1,2:-0.886313643298;GATA4:-0.890523516164;RUNX1..3:-0.927458262231;SPZ1:-0.931127916248;ZNF148:-0.947849418047;NFATC1..3:-0.950036570261;NHLH1,2:-0.960488861078;EN1,2:-0.967378423821;TFAP4:-0.976405851936;TLX2:-0.977237166537;POU3F1..4:-1.01745441366;XBP1:-1.03023618857;NFE2L1:-1.03789982769;RFX1:-1.03957702299;MYFfamily:-1.04576889074;TGIF1:-1.05086926451;SOX17:-1.07856093184;HMX1:-1.10655053092;SRF:-1.13354712882;HBP1_HMGB_SSRP1_UBTF:-1.1348823708;NFIX:-1.16280645327;GCM1,2:-1.20219810409;ZNF238:-1.24714759602;SP1:-1.26984614729;STAT1,3:-1.27579180494;EGR1..3:-1.27763627983;XCPE1{core}:-1.33783272485;NANOG{mouse}:-1.4316040034;RXR{A,B,G}:-1.51211948214;HES1:-1.52760506476;PAX6:-1.64974383921;SMAD1..7,9:-2.37732127928 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10496-107C1;search_select_hide=table117:FF:10496-107C1 | |||
}} | }} |
Latest revision as of 14:27, 3 June 2020
Name: | bile duct carcinoma cell line:TFK-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11265 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11265
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11265
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0566 |
10 | 10 | 0.0354 |
100 | 100 | 0.0938 |
101 | 101 | 0.759 |
102 | 102 | 0.466 |
103 | 103 | 0.623 |
104 | 104 | 0.992 |
105 | 105 | 0.516 |
106 | 106 | 0.305 |
107 | 107 | 0.34 |
108 | 108 | 0.299 |
109 | 109 | 0.154 |
11 | 11 | 0.787 |
110 | 110 | 0.336 |
111 | 111 | 0.224 |
112 | 112 | 0.483 |
113 | 113 | 0.385 |
114 | 114 | 0.0496 |
115 | 115 | 0.709 |
116 | 116 | 0.418 |
117 | 117 | 0.116 |
118 | 118 | 0.463 |
119 | 119 | 0.0942 |
12 | 12 | 0.641 |
120 | 120 | 0.803 |
121 | 121 | 0.0228 |
122 | 122 | 0.423 |
123 | 123 | 0.00433 |
124 | 124 | 0.834 |
125 | 125 | 0.668 |
126 | 126 | 0.995 |
127 | 127 | 0.136 |
128 | 128 | 0.649 |
129 | 129 | 0.72 |
13 | 13 | 0.0166 |
130 | 130 | 0.513 |
131 | 131 | 0.337 |
132 | 132 | 0.715 |
133 | 133 | 0.136 |
134 | 134 | 0.771 |
135 | 135 | 0.528 |
136 | 136 | 0.216 |
137 | 137 | 0.134 |
138 | 138 | 0.748 |
139 | 139 | 0.117 |
14 | 14 | 0.736 |
140 | 140 | 0.515 |
141 | 141 | 0.27 |
142 | 142 | 0.842 |
143 | 143 | 0.048 |
144 | 144 | 0.318 |
145 | 145 | 0.785 |
146 | 146 | 0.435 |
147 | 147 | 0.73 |
148 | 148 | 0.128 |
149 | 149 | 0.986 |
15 | 15 | 0.0845 |
150 | 150 | 0.521 |
151 | 151 | 0.179 |
152 | 152 | 0.604 |
153 | 153 | 0.894 |
154 | 154 | 0.753 |
155 | 155 | 0.675 |
156 | 156 | 0.31 |
157 | 157 | 0.429 |
158 | 158 | 0.419 |
159 | 159 | 0.431 |
16 | 16 | 0.379 |
160 | 160 | 0.922 |
161 | 161 | 0.869 |
162 | 162 | 0.705 |
163 | 163 | 0.868 |
164 | 164 | 0.0289 |
165 | 165 | 0.0473 |
166 | 166 | 0.308 |
167 | 167 | 0.412 |
168 | 168 | 0.754 |
169 | 169 | 0.0113 |
17 | 17 | 0.287 |
18 | 18 | 0.509 |
19 | 19 | 0.533 |
2 | 2 | 0.864 |
20 | 20 | 0.163 |
21 | 21 | 0.255 |
22 | 22 | 0.913 |
23 | 23 | 0.96 |
24 | 24 | 0.466 |
25 | 25 | 0.603 |
26 | 26 | 0.144 |
27 | 27 | 0.989 |
28 | 28 | 0.606 |
29 | 29 | 0.193 |
3 | 3 | 0.113 |
30 | 30 | 0.859 |
31 | 31 | 0.599 |
32 | 32 | 0.175 |
33 | 33 | 0.109 |
34 | 34 | 0.326 |
35 | 35 | 0.621 |
36 | 36 | 0.12 |
37 | 37 | 0.487 |
38 | 38 | 0.471 |
39 | 39 | 0.41 |
4 | 4 | 0.505 |
40 | 40 | 0.371 |
41 | 41 | 0.0772 |
42 | 42 | 0.156 |
43 | 43 | 0.603 |
44 | 44 | 0.89 |
45 | 45 | 0.697 |
46 | 46 | 0.304 |
47 | 47 | 0.614 |
48 | 48 | 0.536 |
49 | 49 | 0.496 |
5 | 5 | 0.546 |
50 | 50 | 0.482 |
51 | 51 | 0.887 |
52 | 52 | 0.55 |
53 | 53 | 0.428 |
54 | 54 | 0.652 |
55 | 55 | 0.865 |
56 | 56 | 0.666 |
57 | 57 | 0.232 |
58 | 58 | 0.453 |
59 | 59 | 0.813 |
6 | 6 | 0.895 |
60 | 60 | 0.324 |
61 | 61 | 0.102 |
62 | 62 | 0.537 |
63 | 63 | 0.0649 |
64 | 64 | 0.393 |
65 | 65 | 0.593 |
66 | 66 | 0.786 |
67 | 67 | 0.745 |
68 | 68 | 0.051 |
69 | 69 | 0.463 |
7 | 7 | 0.193 |
70 | 70 | 0.0881 |
71 | 71 | 0.0851 |
72 | 72 | 0.631 |
73 | 73 | 0.951 |
74 | 74 | 0.967 |
75 | 75 | 0.011 |
76 | 76 | 0.255 |
77 | 77 | 0.189 |
78 | 78 | 0.00119 |
79 | 79 | 0.133 |
8 | 8 | 0.759 |
80 | 80 | 0.31 |
81 | 81 | 0.532 |
82 | 82 | 0.408 |
83 | 83 | 0.581 |
84 | 84 | 0.202 |
85 | 85 | 0.962 |
86 | 86 | 0.375 |
87 | 87 | 0.793 |
88 | 88 | 0.801 |
89 | 89 | 0.34 |
9 | 9 | 0.488 |
90 | 90 | 0.168 |
91 | 91 | 0.189 |
92 | 92 | 0.624 |
93 | 93 | 0.535 |
94 | 94 | 0.74 |
95 | 95 | 0.926 |
96 | 96 | 0.97 |
97 | 97 | 0.616 |
98 | 98 | 0.428 |
99 | 99 | 0.809 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11265
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0103910 bile duct cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002394 (bile duct)
0000058 (duct)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0002294 (biliary system)
0001173 (biliary tree)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103910 (bile duct cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)