FF:10723-110A3: Difference between revisions

Latest revision as of 15:02, 3 June 2020

Name:	pharyngeal carcinoma cell line:Detroit 562
Species:	Human (Homo sapiens)
Library ID:	CNhs11849
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pharynx
dev stage	NA
sex	female
age	NA
cell type	unclassifiable
cell line	Detroit 562
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005900

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11849		CAGE		DRX007984		DRR008856

Accession ID Hg19

Library id		BAM		CTSS
CNhs11849		DRZ000281		DRZ001666

Accession ID Hg38

Library id		BAM		CTSS
CNhs11849		DRZ011631		DRZ013016

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.332
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.168
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0918
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.108
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.221
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.125
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0522
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.095
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.247
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.661
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0519
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0988
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0522
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0533
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.195
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.277
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11849

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.30045e-4
MA0003.1	MA0003.1	0.603
MA0004.1	MA0004.1	0.832
MA0006.1	MA0006.1	0.0592
MA0007.1	MA0007.1	0.414
MA0009.1	MA0009.1	0.548
MA0014.1	MA0014.1	0.11
MA0017.1	MA0017.1	0.174
MA0018.2	MA0018.2	0.0155
MA0019.1	MA0019.1	0.535
MA0024.1	MA0024.1	0.127
MA0025.1	MA0025.1	0.66
MA0027.1	MA0027.1	0.761
MA0028.1	MA0028.1	0.89
MA0029.1	MA0029.1	0.967
MA0030.1	MA0030.1	0.137
MA0031.1	MA0031.1	0.497
MA0035.2	MA0035.2	0.579
MA0038.1	MA0038.1	0.497
MA0039.2	MA0039.2	0.159
MA0040.1	MA0040.1	0.187
MA0041.1	MA0041.1	0.878
MA0042.1	MA0042.1	0.367
MA0043.1	MA0043.1	0.522
MA0046.1	MA0046.1	0.748
MA0047.2	MA0047.2	0.111
MA0048.1	MA0048.1	0.58
MA0050.1	MA0050.1	3.09005e-6
MA0051.1	MA0051.1	3.49539e-4
MA0052.1	MA0052.1	0.107
MA0055.1	MA0055.1	0.418
MA0057.1	MA0057.1	0.6
MA0058.1	MA0058.1	0.328
MA0059.1	MA0059.1	0.0484
MA0060.1	MA0060.1	0.624
MA0061.1	MA0061.1	0.29
MA0062.2	MA0062.2	0.0534
MA0065.2	MA0065.2	0.224
MA0066.1	MA0066.1	0.171
MA0067.1	MA0067.1	0.212
MA0068.1	MA0068.1	0.465
MA0069.1	MA0069.1	0.244
MA0070.1	MA0070.1	0.249
MA0071.1	MA0071.1	0.004
MA0072.1	MA0072.1	0.0204
MA0073.1	MA0073.1	0.491
MA0074.1	MA0074.1	0.926
MA0076.1	MA0076.1	0.267
MA0077.1	MA0077.1	0.0375
MA0078.1	MA0078.1	0.717
MA0079.2	MA0079.2	0.173
MA0080.2	MA0080.2	1.67573e-4
MA0081.1	MA0081.1	0.0139
MA0083.1	MA0083.1	0.368
MA0084.1	MA0084.1	0.8
MA0087.1	MA0087.1	0.73
MA0088.1	MA0088.1	0.0211
MA0090.1	MA0090.1	1.87032e-4
MA0091.1	MA0091.1	0.00107
MA0092.1	MA0092.1	0.936
MA0093.1	MA0093.1	0.689
MA0099.2	MA0099.2	2.77815e-4
MA0100.1	MA0100.1	0.377
MA0101.1	MA0101.1	0.875
MA0102.2	MA0102.2	0.188
MA0103.1	MA0103.1	1.3889e-6
MA0104.2	MA0104.2	0.0947
MA0105.1	MA0105.1	4.14428e-4
MA0106.1	MA0106.1	0.0316
MA0107.1	MA0107.1	0.89
MA0108.2	MA0108.2	0.0289
MA0111.1	MA0111.1	0.694
MA0112.2	MA0112.2	0.129
MA0113.1	MA0113.1	0.101
MA0114.1	MA0114.1	0.171
MA0115.1	MA0115.1	0.576
MA0116.1	MA0116.1	0.00483
MA0117.1	MA0117.1	0.0128
MA0119.1	MA0119.1	0.39
MA0122.1	MA0122.1	0.795
MA0124.1	MA0124.1	0.0855
MA0125.1	MA0125.1	0.273
MA0131.1	MA0131.1	0.638
MA0135.1	MA0135.1	0.208
MA0136.1	MA0136.1	0.00176
MA0137.2	MA0137.2	0.22
MA0138.2	MA0138.2	0.12
MA0139.1	MA0139.1	0.775
MA0140.1	MA0140.1	0.788
MA0141.1	MA0141.1	0.0476
MA0142.1	MA0142.1	0.0168
MA0143.1	MA0143.1	0.158
MA0144.1	MA0144.1	0.9
MA0145.1	MA0145.1	0.969
MA0146.1	MA0146.1	0.185
MA0147.1	MA0147.1	0.0482
MA0148.1	MA0148.1	0.0197
MA0149.1	MA0149.1	0.311
MA0150.1	MA0150.1	0.17
MA0152.1	MA0152.1	0.233
MA0153.1	MA0153.1	0.722
MA0154.1	MA0154.1	0.00822
MA0155.1	MA0155.1	0.606
MA0156.1	MA0156.1	0.0312
MA0157.1	MA0157.1	0.661
MA0159.1	MA0159.1	0.0967
MA0160.1	MA0160.1	0.0978
MA0162.1	MA0162.1	0.808
MA0163.1	MA0163.1	1.85987e-4
MA0164.1	MA0164.1	0.397
MA0258.1	MA0258.1	0.137
MA0259.1	MA0259.1	0.495

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11849

Novel motif	Logo	P-value
1	1	0.164
10	10	0.422
100	100	0.352
101	101	0.884
102	102	0.525
103	103	0.565
104	104	0.409
105	105	0.826
106	106	0.056
107	107	0.00817
108	108	0.686
109	109	0.521
11	11	0.0931
110	110	0.576
111	111	0.778
112	112	0.201
113	113	0.654
114	114	0.0415
115	115	0.178
116	116	0.462
117	117	0.204
118	118	0.157
119	119	0.915
12	12	0.0579
120	120	0.908
121	121	0.208
122	122	0.853
123	123	0.804
124	124	0.163
125	125	0.883
126	126	0.834
127	127	0.696
128	128	0.768
129	129	0.754
13	13	0.55
130	130	0.755
131	131	0.663
132	132	0.195
133	133	0.426
134	134	0.258
135	135	0.586
136	136	0.0122
137	137	0.103
138	138	0.961
139	139	0.0949
14	14	0.98
140	140	0.776
141	141	0.249
142	142	0.792
143	143	8.87995e-4
144	144	0.132
145	145	0.632
146	146	0.646
147	147	0.0692
148	148	0.665
149	149	0.225
15	15	0.21
150	150	0.27
151	151	0.869
152	152	0.00926
153	153	0.583
154	154	0.491
155	155	0.694
156	156	0.974
157	157	0.813
158	158	0.225
159	159	0.977
16	16	0.772
160	160	0.457
161	161	0.37
162	162	0.326
163	163	0.928
164	164	0.96
165	165	0.665
166	166	0.542
167	167	0.933
168	168	0.693
169	169	0.345
17	17	0.82
18	18	0.164
19	19	0.0828
2	2	0.966
20	20	0.647
21	21	0.881
22	22	0.151
23	23	0.841
24	24	0.738
25	25	0.275
26	26	0.449
27	27	0.766
28	28	0.92
29	29	0.814
3	3	0.334
30	30	0.211
31	31	0.365
32	32	0.0315
33	33	0.289
34	34	0.353
35	35	0.0458
36	36	0.132
37	37	0.379
38	38	0.996
39	39	0.25
4	4	0.132
40	40	0.488
41	41	0.0236
42	42	0.63
43	43	0.0451
44	44	0.912
45	45	0.777
46	46	0.181
47	47	0.218
48	48	0.775
49	49	0.00728
5	5	0.68
50	50	0.696
51	51	0.49
52	52	0.253
53	53	0.471
54	54	0.637
55	55	0.233
56	56	0.746
57	57	0.915
58	58	0.625
59	59	0.237
6	6	0.912
60	60	0.165
61	61	0.569
62	62	0.156
63	63	0.883
64	64	0.701
65	65	0.725
66	66	0.685
67	67	0.233
68	68	0.0725
69	69	0.421
7	7	0.977
70	70	0.754
71	71	0.57
72	72	0.199
73	73	0.271
74	74	0.00744
75	75	0.713
76	76	0.802
77	77	0.863
78	78	0.726
79	79	0.465
8	8	0.237
80	80	0.0398
81	81	0.0618
82	82	0.00156
83	83	0.384
84	84	0.391
85	85	0.456
86	86	0.499
87	87	0.0606
88	88	0.424
89	89	0.901
9	9	0.144
90	90	0.417
91	91	0.165
92	92	0.56
93	93	0.797
94	94	0.145
95	95	0.672
96	96	0.0444
97	97	0.589
98	98	0.184
99	99	0.919

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11849

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100834 Detroit 562 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0006562 (pharynx)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100819 (pharyngeal cell line sample)
0100790 (pharyngeal cancer cell line sample)
0100834 (Detroit 562 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007878
+|DRA_sample_Accession=CAGE@SAMD00005900
-|accession_numbers=CAGE;DRX007984;DRR008856;DRZ000281;DRZ001666
+|accession_numbers=CAGE;DRX007984;DRR008856;DRZ000281;DRZ001666;DRZ011631;DRZ013016
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0006562,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.68!474.64!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.03!105.02!ELF3;;chr6:126240442..126240459,+!p4@NCOA7!1.92!103.74!NCOA7;;chr11:34642656..34642667,+!p2@EHF!1.90!78.96!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!1.89!123.04!FOXQ1;;chr1:201979703..201979721,+!p2@ELF3!1.81!63.24!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.67!45.74!FOXA1;;chr6:126240380..126240430,+!p2@NCOA7!1.65!108.85!NCOA7;;chr1:209979467..209979494,-!p1@IRF6!1.63!46.25!IRF6;;chr2:176969228..176969260,+!p1@HOXD11!1.63!41.40!HOXD11;;chr8:102504651..102504683,+!p1@GRHL2!1.61!39.99!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.57!36.16!IRX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.56!53.66!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.56!39.48!ZNF385A;;chr6:126240463..126240489,+!p6@NCOA7!1.55!38.33!NCOA7;;chr1:209979411..209979433,-!p2@IRF6!1.51!31.69!IRF6;;chr3:181429704..181429722,+!p1@SOX2!1.43!25.68!SOX2;;chr3:189507432..189507459,+!p1@TP63!1.37!22.36!TP63;;chr17:7493405..7493419,-!p1@SOX15!1.37!22.23!SOX15;;chr20:55204351..55204377,+!p1@TFAP2C!1.35!26.83!TFAP2C;;chr15:83953397..83953425,-!p1@BNC1!1.34!24.15!BNC1;;chr14:37131058..37131139,+!p1@PAX9!1.28!18.14!PAX9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.74!ZBED1;;chr11:129245526..129245553,+!p1@BARX2!1.23!16.10!BARX2;;chr7:27153454..27153469,-!p2@HOXA3!1.23!15.97!HOXA3;;chr6:34524093..34524135,-!p1@SPDEF!1.22!15.71!SPDEF;;chr2:46524897..46524911,+!p2@EPAS1!1.19!40.63!EPAS1;;chr2:176969179..176969226,+!p2@HOXD11!1.19!14.56!HOXD11;;chr22:19748231..19748317,+!p1@TBX1!1.16!13.42!TBX1;;chr8:102504690..102504704,+!p3@GRHL2!1.12!12.27!GRHL2;;chr11:129245736..129245758,+!p2@BARX2!1.12!12.27!BARX2;;chr3:181429741..181429767,+!p2@SOX2!1.11!11.88!SOX2;;chr6:126240356..126240379,+!p7@NCOA7!1.08!13.54!NCOA7;;chr6:10413188..10413249,-!p7@TFAP2A!1.07!10.73!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.06!113.96!KLF5;;chr17:7492684..7492778,-!p2@SOX15!1.06!22.10!SOX15;;chr3:168864315..168864339,-!p2@MECOM!1.06!17.25!MECOM;;chr19:9811347..9811351,-!p1@ZNF812!1.06!10.60!ZNF812;;chr10:48355030..48355090,+!p1@ZNF488!1.05!13.29!ZNF488;;chr17:80797886..80797906,-!p1@ZNF750!1.05!10.35!ZNF750;;chr5:2751785..2751808,-!p2@IRX2!1.05!10.22!IRX2;;chr6:126240542..126240553,+!p14@NCOA7!1.05!10.09!NCOA7;;chr2:60780753..60780800,-!p1@BCL11A!1.03!48.93!BCL11A;;chr5:137804484..137804498,+!p2@EGR1!1.03!39.73!EGR1;;chr6:126240490..126240501,+!p11@NCOA7!1.02!9.45!NCOA7;;chr5:134369905..134369972,-!p1@PITX1!1.01!14.31!PITX1;;chr7:96654133..96654150,-!p1@DLX5!1.01!9.20!DLX5;;chr6:34524049..34524089,-!p2@SPDEF!0.98!8.56!SPDEF;;chr17:46687959..46688007,-!p2@HOXB7!0.97!11.75!HOXB7;;chr8:102504979..102505010,+!p2@GRHL2!0.97!8.30!GRHL2;;chr2:60780607..60780624,-!p2@BCL11A!0.95!24.91!BCL11A;;chr7:27196267..27196311,-!p1@HOXA7!0.95!7.92!HOXA7;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.28!SOX7;;chr1:935398..935465,-!p2@HES4!0.91!15.20!HES4;;chr1:37940170..37940190,+!p1@ZC3H12A!0.90!89.69!ZC3H12A;;chr12:27485762..27485776,+!p3@ARNTL2!0.90!19.29!ARNTL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.90!8.05!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!0.90!7.03!HES2;;chr20:30193083..30193098,+!p1@ID1!0.89!577.49!ID1;;chr15:67418047..67418093,+!p4@SMAD3!0.89!8.69!SMAD3;;chr5:137801160..137801176,+!p1@EGR1!0.88!683.40!EGR1;;chr12:53625966..53626012,-!p2@RARG!0.87!17.89!RARG;;chr9:132427972..132428056,+!p1@PRRX2!0.87!8.43!PRRX2;;chr5:137804405..137804444,+!p3@EGR1!0.87!7.79!EGR1;;chr5:137804357..137804390,+!p4@EGR1!0.87!7.67!EGR1;;chr6:36355513..36355578,-!p2@ETV7!0.86!8.05!ETV7;;chr15:96869511..96869525,+!p16@NR2F2!0.86!7.03!NR2F2;;chr6:10412600..10412637,-!p1@TFAP2A!0.85!10.48!TFAP2A;;chr20:50721803..50721857,-!p2@ZFP64!0.85!9.97!ZFP64;;chr3:169381420..169381535,-!p1@MECOM!0.85!7.28!MECOM;;chr6:28321971..28321995,-!p1@ZNF323!0.85!6.13!ZNF323;;chr1:935467..935484,-!p1@HES4!0.84!27.98!HES4;;chr15:96869255..96869291,+!p6@NR2F2!0.84!11.24!NR2F2;;chr6:10415276..10415341,-!p2@TFAP2A!0.84!7.41!TFAP2A;;chr14:37051798..37051831,-!p1@NKX2-8!0.84!5.88!NKX2-8;;chr5:134369879..134369898,-!p2@PITX1!0.83!5.75!PITX1;;chr7:96654026..96654061,-!p2@DLX5!0.83!5.75!DLX5;;chr3:193853927..193853944,+!p1@HES1!0.82!194.84!HES1;;chr12:80084737..80084763,-!p3@PAWR!0.82!22.36!PAWR;;chr18:19749541..19749557,+!p1@GATA6!0.82!18.53!GATA6;;chr6:34524025..34524045,-!p3@SPDEF!0.82!5.62!SPDEF;;chr6:21593973..21593988,+!p1@SOX4!0.81!212.09!SOX4;;chr6:1610293..1610310,+!p1@FOXC1!0.81!9.58!FOXC1;;chr1:158985493..158985535,+!p4@IFI16!0.81!8.56!IFI16;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.49!HOXD8;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!58.00!GLIS2;;chr14:38064590..38064606,-!p2@FOXA1!0.80!5.24!FOXA1;;chr2:46524878..46524891,+!p3@EPAS1!0.79!9.58!EPAS1;;chr12:125002827..125002855,-!p5@NCOR2!0.79!7.54!NCOR2;;chr11:120107344..120107351,+!p1@POU2F3!0.79!6.39!POU2F3;;chr7:27142290..27142310,-!p1@HOXA2!0.79!5.11!HOXA2;;chr12:54332608..54332636,+!p1@HOXC13!0.78!4.98!HOXC13;;chr14:75894714..75894733,+!p1@JDP2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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10723-110A3
 |is_a=EFO:0002091;;FF:0000210;;FF:0100834
 |is_obsolete=
 |library_id=CNhs11849
-|library_id_phase_based=1:CNhs11849
+|library_id_phase_based=2:CNhs11849
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10723
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10723
 |name=pharyngeal carcinoma cell line:Detroit 562
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
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-|profile_rnaseq=,,,
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@@ Line 90: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10723-110A3;search_select_hide=table117:FF:10723-110A3
 }}

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FF:10723-110A3: Difference between revisions

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Latest revision as of 15:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0