FF:11236-116D3: Difference between revisions

Latest revision as of 16:26, 3 June 2020

Name:	Endothelial Cells - Lymphatic, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10865
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lymph node
dev stage	fetus
sex	unknown
age	fetal
cell type	endothelial cell, lymphatic
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3719
catalog number	SC2015
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005778

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10865		CAGE		DRX008223		DRR009095

Accession ID Hg19

Library id		BAM		CTSS
CNhs10865		DRZ000520		DRZ001905

Accession ID Hg38

Library id		BAM		CTSS
CNhs10865		DRZ011870		DRZ013255

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005778

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10005.TGACCA		sRNA-Seq		DRX037057		DRR041423

Accession ID Hg19

Library id		BAM		CTSS
SRhi10005.TGACCA		DRZ007065

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0854
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.116
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.092
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.407
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0173
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.181
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0291
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.179
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.461
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.209
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0998
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.407
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0998
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10865

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.66459e-4
MA0003.1	MA0003.1	0.292
MA0004.1	MA0004.1	0.0518
MA0006.1	MA0006.1	0.218
MA0007.1	MA0007.1	0.565
MA0009.1	MA0009.1	0.227
MA0014.1	MA0014.1	0.532
MA0017.1	MA0017.1	0.15
MA0018.2	MA0018.2	5.21013e-6
MA0019.1	MA0019.1	0.856
MA0024.1	MA0024.1	0.0857
MA0025.1	MA0025.1	0.00898
MA0027.1	MA0027.1	0.46
MA0028.1	MA0028.1	0.962
MA0029.1	MA0029.1	0.799
MA0030.1	MA0030.1	0.754
MA0031.1	MA0031.1	0.523
MA0035.2	MA0035.2	0.627
MA0038.1	MA0038.1	0.3
MA0039.2	MA0039.2	0.955
MA0040.1	MA0040.1	0.917
MA0041.1	MA0041.1	0.934
MA0042.1	MA0042.1	0.762
MA0043.1	MA0043.1	5.26654e-6
MA0046.1	MA0046.1	0.461
MA0047.2	MA0047.2	0.123
MA0048.1	MA0048.1	0.0271
MA0050.1	MA0050.1	0.323
MA0051.1	MA0051.1	0.0672
MA0052.1	MA0052.1	0.183
MA0055.1	MA0055.1	0.0231
MA0057.1	MA0057.1	0.695
MA0058.1	MA0058.1	0.0027
MA0059.1	MA0059.1	0.928
MA0060.1	MA0060.1	0.131
MA0061.1	MA0061.1	0.016
MA0062.2	MA0062.2	0.159
MA0065.2	MA0065.2	0.194
MA0066.1	MA0066.1	0.352
MA0067.1	MA0067.1	0.937
MA0068.1	MA0068.1	0.143
MA0069.1	MA0069.1	0.0115
MA0070.1	MA0070.1	0.235
MA0071.1	MA0071.1	0.476
MA0072.1	MA0072.1	0.334
MA0073.1	MA0073.1	0.372
MA0074.1	MA0074.1	0.737
MA0076.1	MA0076.1	0.0525
MA0077.1	MA0077.1	6.70123e-6
MA0078.1	MA0078.1	0.0608
MA0079.2	MA0079.2	0.806
MA0080.2	MA0080.2	0.0599
MA0081.1	MA0081.1	0.214
MA0083.1	MA0083.1	0.0882
MA0084.1	MA0084.1	0.091
MA0087.1	MA0087.1	0.0962
MA0088.1	MA0088.1	0.308
MA0090.1	MA0090.1	0.162
MA0091.1	MA0091.1	0.201
MA0092.1	MA0092.1	0.65
MA0093.1	MA0093.1	0.0384
MA0099.2	MA0099.2	0.162
MA0100.1	MA0100.1	0.504
MA0101.1	MA0101.1	0.683
MA0102.2	MA0102.2	0.00237
MA0103.1	MA0103.1	0.0217
MA0104.2	MA0104.2	0.297
MA0105.1	MA0105.1	0.0617
MA0106.1	MA0106.1	8.81929e-4
MA0107.1	MA0107.1	0.564
MA0108.2	MA0108.2	4.43548e-7
MA0111.1	MA0111.1	0.391
MA0112.2	MA0112.2	0.0162
MA0113.1	MA0113.1	0.852
MA0114.1	MA0114.1	0.153
MA0115.1	MA0115.1	0.364
MA0116.1	MA0116.1	8.33577e-4
MA0117.1	MA0117.1	0.168
MA0119.1	MA0119.1	0.0189
MA0122.1	MA0122.1	0.401
MA0124.1	MA0124.1	0.392
MA0125.1	MA0125.1	0.549
MA0131.1	MA0131.1	0.103
MA0135.1	MA0135.1	0.141
MA0136.1	MA0136.1	0.183
MA0137.2	MA0137.2	0.15
MA0138.2	MA0138.2	0.436
MA0139.1	MA0139.1	0.376
MA0140.1	MA0140.1	0.197
MA0141.1	MA0141.1	0.686
MA0142.1	MA0142.1	0.0991
MA0143.1	MA0143.1	0.591
MA0144.1	MA0144.1	0.952
MA0145.1	MA0145.1	0.874
MA0146.1	MA0146.1	0.23
MA0147.1	MA0147.1	0.264
MA0148.1	MA0148.1	0.0945
MA0149.1	MA0149.1	0.0483
MA0150.1	MA0150.1	0.715
MA0152.1	MA0152.1	0.464
MA0153.1	MA0153.1	0.291
MA0154.1	MA0154.1	0.0313
MA0155.1	MA0155.1	0.82
MA0156.1	MA0156.1	0.0979
MA0157.1	MA0157.1	0.397
MA0159.1	MA0159.1	0.431
MA0160.1	MA0160.1	0.801
MA0162.1	MA0162.1	0.51
MA0163.1	MA0163.1	0.193
MA0164.1	MA0164.1	0.528
MA0258.1	MA0258.1	0.155
MA0259.1	MA0259.1	0.523

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10865

Novel motif	Logo	P-value
1	1	0.35
10	10	0.919
100	100	0.217
101	101	0.945
102	102	0.622
103	103	0.554
104	104	0.518
105	105	0.19
106	106	0.18
107	107	0.729
108	108	0.755
109	109	0.762
11	11	0.797
110	110	0.215
111	111	0.357
112	112	0.866
113	113	0.959
114	114	0.52
115	115	0.134
116	116	0.463
117	117	0.598
118	118	0.531
119	119	0.335
12	12	0.46
120	120	0.156
121	121	0.568
122	122	0.452
123	123	0.334
124	124	0.0458
125	125	0.846
126	126	0.824
127	127	0.077
128	128	0.667
129	129	0.276
13	13	0.353
130	130	0.388
131	131	0.567
132	132	0.25
133	133	0.905
134	134	0.42
135	135	0.539
136	136	0.128
137	137	0.293
138	138	0.279
139	139	0.323
14	14	0.892
140	140	0.353
141	141	0.644
142	142	3.63791e-4
143	143	0.68
144	144	0.852
145	145	0.019
146	146	0.445
147	147	0.53
148	148	0.0791
149	149	0.526
15	15	0.602
150	150	0.62
151	151	0.985
152	152	0.207
153	153	0.491
154	154	0.937
155	155	0.401
156	156	0.211
157	157	0.768
158	158	0.238
159	159	0.118
16	16	0.396
160	160	0.55
161	161	0.0328
162	162	0.537
163	163	0.846
164	164	0.201
165	165	0.695
166	166	0.37
167	167	0.734
168	168	0.921
169	169	0.569
17	17	0.68
18	18	0.0662
19	19	0.354
2	2	0.173
20	20	0.021
21	21	0.267
22	22	0.79
23	23	0.609
24	24	0.555
25	25	0.11
26	26	0.437
27	27	0.196
28	28	0.535
29	29	0.816
3	3	0.469
30	30	0.0422
31	31	0.409
32	32	0.146
33	33	0.618
34	34	0.746
35	35	0.274
36	36	0.0722
37	37	0.229
38	38	0.458
39	39	0.059
4	4	0.0201
40	40	0.313
41	41	0.272
42	42	0.594
43	43	0.3
44	44	0.672
45	45	0.929
46	46	0.652
47	47	0.984
48	48	0.411
49	49	0.466
5	5	0.798
50	50	0.72
51	51	0.784
52	52	0.272
53	53	0.992
54	54	0.843
55	55	0.363
56	56	0.692
57	57	0.22
58	58	0.0109
59	59	0.248
6	6	0.564
60	60	0.0596
61	61	0.913
62	62	0.0254
63	63	0.751
64	64	0.262
65	65	0.607
66	66	0.85
67	67	0.668
68	68	0.332
69	69	0.674
7	7	0.413
70	70	0.299
71	71	0.366
72	72	0.961
73	73	0.0195
74	74	0.786
75	75	0.382
76	76	0.251
77	77	0.42
78	78	0.35
79	79	0.642
8	8	0.218
80	80	0.209
81	81	0.412
82	82	0.901
83	83	0.932
84	84	0.636
85	85	0.593
86	86	0.937
87	87	0.956
88	88	0.239
89	89	0.25
9	9	0.12
90	90	0.0805
91	91	0.495
92	92	0.121
93	93	0.168
94	94	0.362
95	95	0.358
96	96	0.693
97	97	0.347
98	98	0.498
99	99	0.22

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10865

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000049 human lymphatic endothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000049 (human lymphatic endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008115
+|DRA_sample_Accession=CAGE@SAMD00005778
-|accession_numbers=CAGE;DRX008223;DRR009095;DRZ000520;DRZ001905
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005778
+|accession_numbers=CAGE;DRX008223;DRR009095;DRZ000520;DRZ001905;DRZ011870;DRZ013255
+|accession_numbers_RNASeq=sRNA-Seq;DRX037057;DRR041423;DRZ007065
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.31!201.57!ERG;;chr20:62680984..62680999,-!p1@SOX18!2.23!222.76!SOX18;;chr18:53068911..53068935,-!p4@TCF4!2.09!135.67!TCF4;;chr19:46801639..46801699,+!p1@HIF3A!1.85!70.29!HIF3A;;chr5:71803177..71803255,-!p1@ZNF366!1.79!60.99!ZNF366;;chr17:6926362..6926377,+!p1@BCL6B!1.77!58.14!BCL6B;;chr9:124991204..124991246,-!p1@LHX6!1.76!56.59!LHX6;;chr8:10588010..10588030,-!p1@SOX7!1.72!51.42!SOX7;;chr7:115670804..115670825,-!p1@TFEC!1.66!44.96!TFEC;;chr17:46682321..46682362,-!p1@HOXB6!1.55!34.37!HOXB6;;chr12:96588368..96588394,+!p3@ELK3!1.50!80.37!ELK3;;chr17:46688334..46688385,-!p1@HOXB7!1.43!37.47!HOXB7;;chr3:169381420..169381535,-!p1@MECOM!1.42!29.20!MECOM;;chr8:55370487..55370503,+!p1@SOX17!1.35!21.19!SOX17;;chr18:22932080..22932170,-!p1@ZNF521!1.34!87.09!ZNF521;;chr3:114343039..114343085,-!p8@ZBTB20!1.30!19.12!ZBTB20;;chr7:15726296..15726315,-!p1@MEOX2!1.30!18.86!MEOX2;;chr7:15726243..15726293,-!p2@MEOX2!1.27!17.57!MEOX2;;chr22:19748231..19748317,+!p1@TBX1!1.26!17.31!TBX1;;chr1:158985493..158985535,+!p4@IFI16!1.24!25.07!IFI16;;chr19:13213511..13213545,-!p2@LYL1!1.21!16.54!LYL1;;chr3:168864315..168864339,-!p2@MECOM!1.17!22.48!MECOM;;chr19:53496768..53496799,-!p1@ZNF702P!1.15!20.16!ZNF702P;;chr2:177053386..177053402,+!p1@HOXD1!1.15!13.18!HOXD1;;chr13:72441315..72441454,-!p1@DACH1!1.14!25.58!DACH1;;chr2:177001290..177001315,+!p1@HOXD3!1.13!12.40!HOXD3;;chr9:16705069..16705086,-!p3@BNC2!1.12!12.15!BNC2;;chr9:14314131..14314147,-!p2@NFIB!1.11!65.90!NFIB;;chr19:46800289..46800327,+!p2@HIF3A!1.08!11.11!HIF3A;;chr6:34204921..34204939,+!p3@HMGA1!1.07!327.41!HMGA1;;chr18:53068982..53068993,-!p20@TCF4!1.05!10.34!TCF4;;chr18:53177984..53178004,-!p17@TCF4!1.05!10.34!TCF4;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.34!KDM5D;;chr11:128563652..128563689,+!p3@FLI1!1.03!9.82!FLI1;;chr10:94449703..94449718,+!p1@HHEX!1.02!37.47!HHEX;;chr4:146402843..146402864,+!p3@SMAD1!1.02!19.12!SMAD1;;chr4:146403912..146403972,+!p5@SMAD1!1.01!11.89!SMAD1;;chr1:200008734..200008765,+!p2@NR5A2!0.98!8.53!NR5A2;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.27!ZFY;;chr6:28321971..28321995,-!p1@ZNF323!0.97!8.27!ZNF323;;chr3:178789522..178789564,-!p2@ZMAT3!0.96!61.24!ZMAT3;;chr18:53257001..53257015,-!p5@TCF4!0.96!14.21!TCF4;;chr2:46524537..46524553,+!p1@EPAS1!0.95!796.96!EPAS1;;chr9:14082760..14082775,-!p6@NFIB!0.95!13.18!NFIB;;chr18:53068940..53068951,-!p21@TCF4!0.95!8.01!TCF4;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.75!ZNF385D;;chr9:14314566..14314618,-!p1@NFIB!0.93!94.58!NFIB;;chr19:13213662..13213686,-!p1@LYL1!0.93!11.37!LYL1;;chr1:6479968..6479986,-!p1@HES2!0.93!7.49!HES2;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.49!HOXD8;;chr19:13213399..13213414,-!p6@LYL1!0.92!7.24!LYL1;;chr15:96869114..96869160,+!p11@NR2F2!0.90!9.56!NR2F2;;chr13:72441074..72441172,-!p2@DACH1!0.90!6.98!DACH1;;chr16:69599899..69599919,+!p2@NFAT5!0.89!81.40!NFAT5;;chr15:96876966..96877017,+!p12@NR2F2!0.89!9.82!NR2F2;;chr10:31288398..31288455,-!p2@ZNF438!0.89!8.01!ZNF438;;chr17:46690839..46690884,-!p1@HOXB8!0.89!6.72!HOXB8;;chr1:158979686..158979745,+!p1@IFI16!0.87!220.43!IFI16;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.34!ZFP64;;chr12:80084167..80084197,-!p5@PAWR!0.86!15.25!PAWR;;chr20:50159198..50159299,-!p1@NFATC2!0.86!9.30!NFATC2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.06!HMGA2;;chr1:205601064..205601087,-!p4@ELK4!0.84!11.89!ELK4;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.94!EBF3;;chr13:72441506..72441562,-!p3@DACH1!0.84!5.94!DACH1;;chr18:53068893..53068902,-!p28@TCF4!0.84!5.94!TCF4;;chr8:106330656..106330684,+!p1@ZFPM2!0.83!16.02!ZFPM2;;chr1:214161272..214161322,+!p1@PROX1!0.83!8.27!PROX1;;chr7:115670792..115670797,-!p2@TFEC!0.83!5.69!TFEC;;chr3:21792585..21792625,-!p2@ZNF385D!0.80!5.94!ZNF385D;;chr18:52989031..52989079,-!p2@TCF4!0.79!12.92!TCF4;;chr9:14314106..14314119,-!p5@NFIB!0.79!9.82!NFIB;;chr9:14083467..14083483,-!p4@NFIB!0.78!13.18!NFIB;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.73!EPAS1;;chr9:14313893..14313908,-!p7@NFIB!0.77!7.24!NFIB;;chr12:80084137..80084165,-!p10@PAWR!0.77!6.46!PAWR;;chr17:46655672..46655697,-!p3@HOXB4!0.77!4.91!HOXB4;;chr17:46691732..46691766,-!p4@HOXB8!0.77!4.91!HOXB8;;chr4:146402997..146403020,+!p1@SMAD1!0.76!36.95!SMAD1;;chr10:35484804..35484902,+!p2@CREM!0.76!19.64!CREM;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.72!HOXB7;;chr15:96873984..96873999,+!p3@NR2F2!0.75!37.21!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!0.75!31.79!GATA2;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.24!HOXB4;;chr17:46659728..46659749,-!p3@HOXB3!0.75!4.65!HOXB3;;chr3:168864383..168864400,-!p7@MECOM!0.75!4.65!MECOM;;chr12:80084018..80084035,-!p17@PAWR!0.75!4.65!PAWR;;chr1:200011711..200011752,+!p3@NR5A2!0.75!4.65!NR5A2;;chr1:47695003..47695042,-!p2@TAL1!0.75!4.65!TAL1;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.21!FLI1;;chr3:114343826..114343869,-!p4@ZBTB20!0.74!9.56!ZBTB20;;chr22:19746969..19746987,+!p2@TBX1!0.73!4.39!TBX1;;chr7:27205136..27205164,-!p1@HOXA9!0.73!4.39!HOXA9;;chr1:47697539..4769757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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002138;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001473;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=CL:0000222,CL:0005022
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor1.CNhs10865.11236-116D3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11236-116D3
 |is_a=EFO:0002091;;FF:0000049
 |is_obsolete=
 |library_id=CNhs10865
-|library_id_phase_based=1:CNhs10865
+|library_id_phase_based=2:CNhs10865
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11236
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.TGACCA.11236
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11236
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.TGACCA.11236
 |name=Endothelial Cells - Lymphatic, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10865,LSID702,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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@@ Line 67: / Line 82: @@
 |rna_tube_id=116D3
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10005.TGACCA
 |sample_age=fetal
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11236-116D3;search_select_hide=table117:FF:11236-116D3
 }}

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FF:11236-116D3: Difference between revisions

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Latest revision as of 16:26, 3 June 2020

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