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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005841
|accession_numbers=CAGE;DRX007989;DRR008861;DRZ000286;DRZ001671
|accession_numbers=CAGE;DRX007989;DRR008861;DRZ000286;DRZ001671;DRZ011636;DRZ013021
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|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg38.nobarcode.ctss.bed.gz
|id=FF:10469-106I1
|id=FF:10469-106I1
|is_a=EFO:0002091;;FF:0000210;;FF:0101532
|is_a=EFO:0002091;;FF:0000210;;FF:0101532
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|library_id=CNhs11255
|library_id=CNhs11255
|library_id_phase_based=2:CNhs11255
|library_id_phase_based=2:CNhs11255
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10469
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10469
|name=rectal cancer cell line:TT1TKB
|name=rectal cancer cell line:TT1TKB
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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Line 90: Line 100:
|top_motifs=HOX{A6,A7,B6,B7}:2.84173573174;ZEB1:2.11286707943;VSX1,2:2.10068548197;SNAI1..3:2.09699763821;FOXQ1:1.67244578191;PDX1:1.4242782586;HNF4A_NR2F1,2:1.36349017199;LEF1_TCF7_TCF7L1,2:1.33858267847;HNF1A:1.32421891781;FOXD3:1.32142982413;SP1:1.1940150962;bHLH_family:1.17452177804;FOXN1:1.17068450903;RORA:1.15765880961;ATF4:1.11210506202;ZNF148:1.10509179049;XCPE1{core}:0.899427951448;TEAD1:0.844657031166;NFY{A,B,C}:0.837407636142;TLX2:0.814904540538;ATF6:0.78853776275;RBPJ:0.781040300481;ONECUT1,2:0.741142978917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.64478787862;TEF:0.637953306418;TFDP1:0.626828335868;MYOD1:0.60020284128;HLF:0.583886830623;POU2F1..3:0.567543294204;PAX8:0.557155555241;MYB:0.543924890402;SREBF1,2:0.542387920761;TBP:0.535005396099;MED-1{core}:0.510507935673;POU6F1:0.507830537486;FOX{F1,F2,J1}:0.505940901066;FOXM1:0.483177265363;PITX1..3:0.442525851013;E2F1..5:0.440336827913;TFAP2{A,C}:0.438547503373;LMO2:0.433993830932;ATF5_CREB3:0.427498757791;ELK1,4_GABP{A,B1}:0.404592292726;SOX17:0.386737908275;CRX:0.38371066397;CDX1,2,4:0.368804420226;HIF1A:0.365875147403;EN1,2:0.323642736655;GATA6:0.307722993304;MTF1:0.301686172891;FOX{D1,D2}:0.300867770242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.293646852501;IRF7:0.290404625004;FOS_FOS{B,L1}_JUN{B,D}:0.288614569095;HOXA9_MEIS1:0.287555304899;NANOG:0.255797349901;AHR_ARNT_ARNT2:0.252730004214;NKX2-1,4:0.246710159278;TBX4,5:0.228469676999;RFX2..5_RFXANK_RFXAP:0.226591400718;POU5F1:0.216128084509;FOX{I1,J2}:0.21551125775;NKX6-1,2:0.210211622423;NFE2:0.188765848829;ZNF384:0.183249851148;ZNF143:0.145105222089;T:0.14003266951;SOX5:0.126547848167;CUX2:0.120792871282;PAX4:0.114151120895;PAX2:0.10042793388;NKX3-2:0.0952769791242;MAZ:0.0792429592608;EP300:0.0544687474882;SOX{8,9,10}:0.0503528919821;ARID5B:0.021859815038;OCT4_SOX2{dimer}:0.0213406944303;CEBPA,B_DDIT3:0.0156857801536;ZIC1..3:0.0140038005082;ELF1,2,4:0.00396588966964;ZFP161:0.00190662423152;JUN:-0.0210999545453;FOXP1:-0.0313563223807;NKX2-3_NKX2-5:-0.0317240416943;NFIX:-0.0328546980492;CDC5L:-0.0335321019683;FOSL2:-0.0368325730532;NR6A1:-0.0383533199682;HES1:-0.0595612059647;NR3C1:-0.0634304484808;ATF2:-0.0675570787233;RFX1:-0.0686535500391;DBP:-0.0768836641019;PRRX1,2:-0.0793367923399;TFAP2B:-0.0827619218672;SOX2:-0.0887649802256;ZBTB16:-0.0894443868286;PATZ1:-0.0913427843562;TP53:-0.106731870425;HMGA1,2:-0.113568573852;HSF1,2:-0.118533620962;BACH2:-0.128464803501;SRF:-0.130538058266;NFKB1_REL_RELA:-0.131077951036;PAX1,9:-0.13556426838;PBX1:-0.148165661755;PAX3,7:-0.157391933382;STAT5{A,B}:-0.160074415586;ADNP_IRX_SIX_ZHX:-0.168145187483;MEF2{A,B,C,D}:-0.179611225489;IRF1,2:-0.197677193669;NRF1:-0.199174429558;POU3F1..4:-0.201180259888;HBP1_HMGB_SSRP1_UBTF:-0.204962126079;AIRE:-0.206348138494;CREB1:-0.211853309181;STAT2,4,6:-0.229351873241;TFCP2:-0.261357126043;ESRRA:-0.280407588809;HAND1,2:-0.281177121891;FOXL1:-0.296770280736;PPARG:-0.307655661951;ALX4:-0.309572156559;GLI1..3:-0.33992438045;BREu{core}:-0.347568200756;RREB1:-0.348497754311;EVI1:-0.35879746129;IKZF1:-0.360532229364;ESR1:-0.372051780234;XBP1:-0.374931321446;DMAP1_NCOR{1,2}_SMARC:-0.378049326741;NR5A1,2:-0.38010604498;IKZF2:-0.392433979254;NHLH1,2:-0.397799696104;GCM1,2:-0.411049981522;GTF2A1,2:-0.41219139169;MYBL2:-0.417661717057;MAFB:-0.418392862201;NFE2L2:-0.427093914308;HOX{A5,B5}:-0.430643973256;GTF2I:-0.430659387651;MTE{core}:-0.448509362687;EGR1..3:-0.463261298106;FOXA2:-0.467319196819;SPIB:-0.46874656409;EBF1:-0.481466972642;SPI1:-0.518903546866;ETS1,2:-0.51975037973;GATA4:-0.538490841082;LHX3,4:-0.554392328805;TAL1_TCF{3,4,12}:-0.570798638061;POU1F1:-0.582636935565;MZF1:-0.588521214341;GFI1:-0.595404005525;KLF4:-0.610873532977;GFI1B:-0.624832667474;HOX{A4,D4}:-0.634365296326;BPTF:-0.643821157519;RUNX1..3:-0.697159077198;UFEwm:-0.702269619867;PRDM1:-0.767708391263;HIC1:-0.768611529852;YY1:-0.783591204052;FOXP3:-0.835538688895;MYFfamily:-0.854670103319;REST:-0.861190534366;ZNF423:-0.868610608787;GZF1:-0.887973395482;NFATC1..3:-0.914477482094;ZNF238:-0.935506450899;STAT1,3:-0.937765379875;TOPORS:-0.937895171579;TGIF1:-0.948400845039;TLX1..3_NFIC{dimer}:-0.951266375222;TFAP4:-0.952497672251;ZBTB6:-0.955191977713;PAX5:-1.01073863404;NFIL3:-1.0128160734;FOXO1,3,4:-1.11710468574;NFE2L1:-1.1274769873;AR:-1.14220284258;NR1H4:-1.20072368524;ALX1:-1.36807128906;PAX6:-1.41081805055;SPZ1:-1.5706723796;NKX2-2,8:-1.60561129465;SMAD1..7,9:-1.64579029455;RXRA_VDR{dimer}:-1.65528192485;RXR{A,B,G}:-1.77910535778;NANOG{mouse}:-1.85262296867;NKX3-1:-2.22124251362;HMX1:-2.25204661729
|top_motifs=HOX{A6,A7,B6,B7}:2.84173573174;ZEB1:2.11286707943;VSX1,2:2.10068548197;SNAI1..3:2.09699763821;FOXQ1:1.67244578191;PDX1:1.4242782586;HNF4A_NR2F1,2:1.36349017199;LEF1_TCF7_TCF7L1,2:1.33858267847;HNF1A:1.32421891781;FOXD3:1.32142982413;SP1:1.1940150962;bHLH_family:1.17452177804;FOXN1:1.17068450903;RORA:1.15765880961;ATF4:1.11210506202;ZNF148:1.10509179049;XCPE1{core}:0.899427951448;TEAD1:0.844657031166;NFY{A,B,C}:0.837407636142;TLX2:0.814904540538;ATF6:0.78853776275;RBPJ:0.781040300481;ONECUT1,2:0.741142978917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.64478787862;TEF:0.637953306418;TFDP1:0.626828335868;MYOD1:0.60020284128;HLF:0.583886830623;POU2F1..3:0.567543294204;PAX8:0.557155555241;MYB:0.543924890402;SREBF1,2:0.542387920761;TBP:0.535005396099;MED-1{core}:0.510507935673;POU6F1:0.507830537486;FOX{F1,F2,J1}:0.505940901066;FOXM1:0.483177265363;PITX1..3:0.442525851013;E2F1..5:0.440336827913;TFAP2{A,C}:0.438547503373;LMO2:0.433993830932;ATF5_CREB3:0.427498757791;ELK1,4_GABP{A,B1}:0.404592292726;SOX17:0.386737908275;CRX:0.38371066397;CDX1,2,4:0.368804420226;HIF1A:0.365875147403;EN1,2:0.323642736655;GATA6:0.307722993304;MTF1:0.301686172891;FOX{D1,D2}:0.300867770242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.293646852501;IRF7:0.290404625004;FOS_FOS{B,L1}_JUN{B,D}:0.288614569095;HOXA9_MEIS1:0.287555304899;NANOG:0.255797349901;AHR_ARNT_ARNT2:0.252730004214;NKX2-1,4:0.246710159278;TBX4,5:0.228469676999;RFX2..5_RFXANK_RFXAP:0.226591400718;POU5F1:0.216128084509;FOX{I1,J2}:0.21551125775;NKX6-1,2:0.210211622423;NFE2:0.188765848829;ZNF384:0.183249851148;ZNF143:0.145105222089;T:0.14003266951;SOX5:0.126547848167;CUX2:0.120792871282;PAX4:0.114151120895;PAX2:0.10042793388;NKX3-2:0.0952769791242;MAZ:0.0792429592608;EP300:0.0544687474882;SOX{8,9,10}:0.0503528919821;ARID5B:0.021859815038;OCT4_SOX2{dimer}:0.0213406944303;CEBPA,B_DDIT3:0.0156857801536;ZIC1..3:0.0140038005082;ELF1,2,4:0.00396588966964;ZFP161:0.00190662423152;JUN:-0.0210999545453;FOXP1:-0.0313563223807;NKX2-3_NKX2-5:-0.0317240416943;NFIX:-0.0328546980492;CDC5L:-0.0335321019683;FOSL2:-0.0368325730532;NR6A1:-0.0383533199682;HES1:-0.0595612059647;NR3C1:-0.0634304484808;ATF2:-0.0675570787233;RFX1:-0.0686535500391;DBP:-0.0768836641019;PRRX1,2:-0.0793367923399;TFAP2B:-0.0827619218672;SOX2:-0.0887649802256;ZBTB16:-0.0894443868286;PATZ1:-0.0913427843562;TP53:-0.106731870425;HMGA1,2:-0.113568573852;HSF1,2:-0.118533620962;BACH2:-0.128464803501;SRF:-0.130538058266;NFKB1_REL_RELA:-0.131077951036;PAX1,9:-0.13556426838;PBX1:-0.148165661755;PAX3,7:-0.157391933382;STAT5{A,B}:-0.160074415586;ADNP_IRX_SIX_ZHX:-0.168145187483;MEF2{A,B,C,D}:-0.179611225489;IRF1,2:-0.197677193669;NRF1:-0.199174429558;POU3F1..4:-0.201180259888;HBP1_HMGB_SSRP1_UBTF:-0.204962126079;AIRE:-0.206348138494;CREB1:-0.211853309181;STAT2,4,6:-0.229351873241;TFCP2:-0.261357126043;ESRRA:-0.280407588809;HAND1,2:-0.281177121891;FOXL1:-0.296770280736;PPARG:-0.307655661951;ALX4:-0.309572156559;GLI1..3:-0.33992438045;BREu{core}:-0.347568200756;RREB1:-0.348497754311;EVI1:-0.35879746129;IKZF1:-0.360532229364;ESR1:-0.372051780234;XBP1:-0.374931321446;DMAP1_NCOR{1,2}_SMARC:-0.378049326741;NR5A1,2:-0.38010604498;IKZF2:-0.392433979254;NHLH1,2:-0.397799696104;GCM1,2:-0.411049981522;GTF2A1,2:-0.41219139169;MYBL2:-0.417661717057;MAFB:-0.418392862201;NFE2L2:-0.427093914308;HOX{A5,B5}:-0.430643973256;GTF2I:-0.430659387651;MTE{core}:-0.448509362687;EGR1..3:-0.463261298106;FOXA2:-0.467319196819;SPIB:-0.46874656409;EBF1:-0.481466972642;SPI1:-0.518903546866;ETS1,2:-0.51975037973;GATA4:-0.538490841082;LHX3,4:-0.554392328805;TAL1_TCF{3,4,12}:-0.570798638061;POU1F1:-0.582636935565;MZF1:-0.588521214341;GFI1:-0.595404005525;KLF4:-0.610873532977;GFI1B:-0.624832667474;HOX{A4,D4}:-0.634365296326;BPTF:-0.643821157519;RUNX1..3:-0.697159077198;UFEwm:-0.702269619867;PRDM1:-0.767708391263;HIC1:-0.768611529852;YY1:-0.783591204052;FOXP3:-0.835538688895;MYFfamily:-0.854670103319;REST:-0.861190534366;ZNF423:-0.868610608787;GZF1:-0.887973395482;NFATC1..3:-0.914477482094;ZNF238:-0.935506450899;STAT1,3:-0.937765379875;TOPORS:-0.937895171579;TGIF1:-0.948400845039;TLX1..3_NFIC{dimer}:-0.951266375222;TFAP4:-0.952497672251;ZBTB6:-0.955191977713;PAX5:-1.01073863404;NFIL3:-1.0128160734;FOXO1,3,4:-1.11710468574;NFE2L1:-1.1274769873;AR:-1.14220284258;NR1H4:-1.20072368524;ALX1:-1.36807128906;PAX6:-1.41081805055;SPZ1:-1.5706723796;NKX2-2,8:-1.60561129465;SMAD1..7,9:-1.64579029455;RXRA_VDR{dimer}:-1.65528192485;RXR{A,B,G}:-1.77910535778;NANOG{mouse}:-1.85262296867;NKX3-1:-2.22124251362;HMX1:-2.25204661729
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10469-106I1;search_select_hide=table117:FF:10469-106I1
}}
}}

Latest revision as of 14:25, 3 June 2020

Name:rectal cancer cell line:TT1TKB
Species:Human (Homo sapiens)
Library ID:CNhs11255
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuerectum
dev stageNA
sexmale
ageunknown
cell typeunclassifiable
cell lineTT1TKB
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005841
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11255 CAGE DRX007989 DRR008861
Accession ID Hg19

Library idBAMCTSS
CNhs11255 DRZ000286 DRZ001671
Accession ID Hg38

Library idBAMCTSS
CNhs11255 DRZ011636 DRZ013021
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.194
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.32
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
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C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11255

Jaspar motifP-value
MA0002.20.00423
MA0003.10.815
MA0004.10.031
MA0006.10.405
MA0007.10.478
MA0009.10.499
MA0014.10.0142
MA0017.10.00504
MA0018.20.0269
MA0019.10.514
MA0024.10.0332
MA0025.10.207
MA0027.10.871
MA0028.10.00462
MA0029.10.0506
MA0030.10.0718
MA0031.10.0409
MA0035.20.00129
MA0038.10.0171
MA0039.21.89383e-4
MA0040.10.957
MA0041.10.566
MA0042.10.953
MA0043.10.0137
MA0046.13.15768e-9
MA0047.20.139
MA0048.10.929
MA0050.10.241
MA0051.10.0087
MA0052.10.645
MA0055.10.00954
MA0057.10.892
MA0058.10.0293
MA0059.10.957
MA0060.15.07241e-11
MA0061.10.0135
MA0062.20.0198
MA0065.20.269
MA0066.10.467
MA0067.10.298
MA0068.10.495
MA0069.10.989
MA0070.10.367
MA0071.10.83
MA0072.10.155
MA0073.10.255
MA0074.10.933
MA0076.10.0608
MA0077.10.714
MA0078.10.727
MA0079.20.334
MA0080.23.07673e-5
MA0081.10.00826
MA0083.10.191
MA0084.10.14
MA0087.10.643
MA0088.10.314
MA0090.10.0131
MA0091.10.00647
MA0092.10.0533
MA0093.10.0218
MA0099.20.049
MA0100.10.843
MA0101.10.482
MA0102.20.601
MA0103.14.96469e-6
MA0104.20.205
MA0105.15.8165e-4
MA0106.10.177
MA0107.10.143
MA0108.23.3645e-5
MA0111.10.491
MA0112.20.211
MA0113.10.756
MA0114.14.94926e-6
MA0115.10.0601
MA0116.10.00669
MA0117.10.622
MA0119.10.0111
MA0122.10.418
MA0124.10.589
MA0125.10.00264
MA0131.10.444
MA0135.10.554
MA0136.10.00265
MA0137.20.41
MA0138.20.0624
MA0139.10.494
MA0140.10.00748
MA0141.10.831
MA0142.10.872
MA0143.10.438
MA0144.10.691
MA0145.10.357
MA0146.10.197
MA0147.10.25
MA0148.10.236
MA0149.10.694
MA0150.10.615
MA0152.10.268
MA0153.16.75349e-8
MA0154.10.126
MA0155.10.147
MA0156.10.26
MA0157.10.104
MA0159.10.289
MA0160.10.547
MA0162.10.895
MA0163.10.35
MA0164.10.202
MA0258.10.0488
MA0259.10.244



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11255

Novel motifP-value
10.525
100.547
1000.492
1010.304
1020.542
1030.218
1040.79
1050.238
1060.643
1070.631
1080.522
1090.352
110.304
1100.883
1110.0219
1120.0666
1130.552
1140.233
1150.0207
1160.111
1170.208
1180.813
1190.171
120.63
1200.272
1210.761
1220.259
1230.0229
1240.711
1250.0092
1260.243
1270.784
1280.0485
1290.785
130.0385
1300.198
1310.0463
1320.593
1330.0539
1340.0492
1350.0229
1360.0648
1370.196
1380.0722
1390.0252
140.45
1400.957
1410.688
1420.965
1430.219
1440.349
1450.599
1460.352
1470.991
1480.917
1490.79
150.739
1500.707
1510.334
1520.0357
1530.475
1540.1
1550.981
1560.213
1570.827
1580.174
1590.635
160.457
1600.681
1610.756
1620.791
1630.698
1640.377
1650.586
1660.823
1670.402
1680.674
1690.763
170.461
180.221
190.143
20.333
200.226
210.728
220.826
230.796
240.891
250.598
260.736
270.297
280.63
290.786
30.153
300.219
310.434
320.003
330.576
340.611
350.112
360.557
370.403
380.95
390.605
40.154
400.519
410.269
420.698
430.488
440.645
450.257
460.257
470.961
480.846
490.464
50.336
500.269
510.654
520.772
530.705
540.857
550.486
560.88
570.575
580.969
590.262
60.294
600.804
610.555
620.272
630.521
640.515
650.362
666.03755e-4
670.333
680.0012
690.513
70.505
700.128
710.0371
720.967
730.239
740.0867
750.345
760.858
770.209
780.0609
790.0927
80.185
800.792
810.0164
820.00181
830.0319
840.582
850.176
860.329
870.552
880.817
890.124
90.214
900.38
910.0676
920.2
930.317
940.161
950.925
960.724
970.419
980.289
990.766



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11255


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001052 (rectum)
0000160 (intestine)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101532 (rectal cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

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