FFCP PHASE1:Hg19::chr10:49528285..49528289,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:49528285..49528289,+ to FFCP PHASE1:Hg19::chr10:49528285..49528289,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr10:49528285..49528289,+ | |||
|coexpression_cluster_id=C147 | |||
|description=CAGE_peak_at_chr10:49528285..49528289,+ | |||
|id=chr10:49528285..49528289,+ | |||
|ontology_enrichment_celltype=CL:0000738!7.15e-17!140;CL:0000037!7.80e-14!172;CL:0000566!7.80e-14!172;CL:0002031!2.29e-13!124;CL:0002087!3.07e-13!119;CL:0002032!2.32e-12!165;CL:0000837!2.32e-12!165;CL:0000988!4.92e-12!182;CL:0002057!5.31e-12!42;CL:0000860!2.47e-11!45;CL:0000766!1.58e-10!76;CL:0002009!4.20e-08!65;CL:0000557!4.89e-08!71;CL:0000763!1.63e-07!112;CL:0000049!1.63e-07!112;CL:0000839!2.08e-07!70;CL:0002194!2.57e-07!63;CL:0000576!2.57e-07!63;CL:0000040!2.57e-07!63;CL:0000559!2.57e-07!63;CL:0002393!8.36e-07!9;CL:0002397!8.36e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.35e-07;25!CL:0000624;3.33e-07;6!CL:0000576;8.15e-07;48!CL:0000791;9.07e-07;18!CL:0000789;9.07e-07;18!CL:0002419;9.07e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.47e-17,136;CL:0002087,1.11e-13,115;CL:0000037,7.16e-13,168;CL:0002031,1.48e-12,120;CL:0000860,3.61e-12,42;CL:0002057,3.61e-12,42;CL:0000988,5.87e-12,177;CL:0000766,5.04e-11,72;CL:0002032,7.51e-11,161;CL:0000837,7.51e-11,161;CL:0000473,4.94e-10,48;CL:0000234,4.94e-10,48;CL:0002393,3.11e-09,9;CL:0002397,3.11e-09,9;CL:0002009,4.22e-09,61;CL:0000557,1.84e-08,67;CL:0002194,4.91e-08,59;CL:0000576,4.91e-08,59;CL:0000040,4.91e-08,59;CL:0000559,4.91e-08,59;CL:0000084,1.60e-07,25;CL:0000827,1.60e-07,25;CL:0000839,3.37e-07,66;CL:0000624,4.07e-07,6;CL:0000791,6.98e-07,18;CL:0000789,6.98e-07,18;CL:0002420,6.98e-07,18;CL:0002419,6.98e-07,18;CL:0000790,6.98e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;2.67e-09;42!CL:0000790;9.07e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.55e-12!82;UBERON:0000955!1.04e-11!69;UBERON:0006238!1.04e-11!69;UBERON:0002780!1.48e-11!41;UBERON:0001890!1.48e-11!41;UBERON:0006240!1.48e-11!41;UBERON:0000073!6.06e-11!94;UBERON:0001016!6.06e-11!94;UBERON:0005743!6.40e-11!86;UBERON:0001049!8.18e-11!57;UBERON:0005068!8.18e-11!57;UBERON:0006241!8.18e-11!57;UBERON:0007135!8.18e-11!57;UBERON:0003080!9.08e-11!42;UBERON:0002616!2.27e-10!59;UBERON:0007023!2.36e-10!115;UBERON:0002020!1.36e-09!34;UBERON:0003528!1.36e-09!34;UBERON:0001893!2.07e-09!34;UBERON:0002791!2.75e-09!33;UBERON:0001869!1.04e-08!32;UBERON:0000956!1.75e-07!25;UBERON:0000203!1.75e-07!25;UBERON:0002619!2.11e-07!22;UBERON:0002346!4.01e-07!90;UBERON:0001950!6.49e-07!20;UBERON:0002390!7.36e-07!102;UBERON:0003061!7.36e-07!102;UBERON:0002193!7.63e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.56e-07;41!UBERON:0001890;5.56e-07;41!UBERON:0000073;9.43e-07;53!UBERON:0002616;9.43e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.83e-11,56;UBERON:0005068,1.83e-11,56;UBERON:0006241,1.83e-11,56;UBERON:0007135,1.83e-11,56;UBERON:0000955,2.77e-11,68;UBERON:0006238,2.77e-11,68;UBERON:0001017,3.25e-11,81;UBERON:0000073,3.40e-11,53;UBERON:0002616,3.40e-11,53;UBERON:0001016,6.48e-11,89;UBERON:0002780,1.43e-09,41;UBERON:0001890,1.43e-09,41;UBERON:0003080,1.43e-09,41;UBERON:0006240,1.43e-09,41;UBERON:0002346,1.80e-08,86;UBERON:0007023,6.65e-08,114;UBERON:0003075,8.00e-08,82;UBERON:0007284,8.00e-08,82;UBERON:0002390,1.89e-07,98;UBERON:0003061,1.89e-07,98;UBERON:0003528,2.96e-07,34;UBERON:0002020,2.96e-07,34;UBERON:0001893,4.58e-07,34;UBERON:0002193,5.17e-07,108;UBERON:0001474,6.78e-07,82;UBERON:0002371,7.86e-07,76;UBERON:0002619,8.84e-07,22 | |||
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| ||
|short_description=p@chr10:49528285..49528289,+ | |||
}} | }} |
Latest revision as of 13:55, 23 July 2015
Short description: | p@chr10:49528285..49528289, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:49528285..49528289, + |
Coexpression cluster: | C147_Neutrophils_Eosinophils_CD4_CD14_CD8_Natural_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.47e-17 | 136 |
nongranular leukocyte | 1.11e-13 | 115 |
hematopoietic stem cell | 7.16e-13 | 168 |
hematopoietic lineage restricted progenitor cell | 1.48e-12 | 120 |
classical monocyte | 3.61e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.61e-12 | 42 |
hematopoietic cell | 5.87e-12 | 177 |
myeloid leukocyte | 5.04e-11 | 72 |
hematopoietic oligopotent progenitor cell | 7.51e-11 | 161 |
hematopoietic multipotent progenitor cell | 7.51e-11 | 161 |
defensive cell | 4.94e-10 | 48 |
phagocyte | 4.94e-10 | 48 |
intermediate monocyte | 3.11e-09 | 9 |
CD14-positive, CD16-positive monocyte | 3.11e-09 | 9 |
macrophage dendritic cell progenitor | 4.22e-09 | 61 |
granulocyte monocyte progenitor cell | 1.84e-08 | 67 |
monopoietic cell | 4.91e-08 | 59 |
monocyte | 4.91e-08 | 59 |
monoblast | 4.91e-08 | 59 |
promonocyte | 4.91e-08 | 59 |
T cell | 1.60e-07 | 25 |
pro-T cell | 1.60e-07 | 25 |
myeloid lineage restricted progenitor cell | 3.37e-07 | 66 |
CD4-positive, alpha-beta T cell | 4.07e-07 | 6 |
mature alpha-beta T cell | 6.98e-07 | 18 |
alpha-beta T cell | 6.98e-07 | 18 |
immature T cell | 6.98e-07 | 18 |
mature T cell | 6.98e-07 | 18 |
immature alpha-beta T cell | 6.98e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.83e-11 | 56 |
neural rod | 1.83e-11 | 56 |
future spinal cord | 1.83e-11 | 56 |
neural keel | 1.83e-11 | 56 |
brain | 2.77e-11 | 68 |
future brain | 2.77e-11 | 68 |
central nervous system | 3.25e-11 | 81 |
regional part of nervous system | 3.40e-11 | 53 |
regional part of brain | 3.40e-11 | 53 |
nervous system | 6.48e-11 | 89 |
regional part of forebrain | 1.43e-09 | 41 |
forebrain | 1.43e-09 | 41 |
anterior neural tube | 1.43e-09 | 41 |
future forebrain | 1.43e-09 | 41 |
neurectoderm | 1.80e-08 | 86 |
adult organism | 6.65e-08 | 114 |
neural plate | 8.00e-08 | 82 |
presumptive neural plate | 8.00e-08 | 82 |
hematopoietic system | 1.89e-07 | 98 |
blood island | 1.89e-07 | 98 |
brain grey matter | 2.96e-07 | 34 |
gray matter | 2.96e-07 | 34 |
telencephalon | 4.58e-07 | 34 |
hemolymphoid system | 5.17e-07 | 108 |
bone element | 6.78e-07 | 82 |
bone marrow | 7.86e-07 | 76 |
regional part of cerebral cortex | 8.84e-07 | 22 |