Personal tools

FF:11759-123H4: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005850
|DRA_sample_Accession=CAGE@SAMD00005850
|accession_numbers=CAGE;DRX008564;DRR009436;DRZ000861;DRZ002246
|accession_numbers=CAGE;DRX008564;DRR009436;DRZ000861;DRZ002246;DRZ012211;DRZ013596
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
Line 51: Line 51:
|library_id=CNhs12375
|library_id=CNhs12375
|library_id_phase_based=2:CNhs12375
|library_id_phase_based=2:CNhs12375
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11759
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11759
|name=mesenchymal precursor cell - ovarian cancer right ovary, donor2
|name=mesenchymal precursor cell - ovarian cancer right ovary, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 58: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0256000435883414,0,-0.0399705653208904,0.269869843747232,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167050120874084,0,0,0.022919082798648,0,0,0.494172046684624,0,0,0.22363149919401,0,0,0,0,0,0,0,0,0,0,0,0,0.109289448902861,0.134717986498045,0.18908192918211,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.183868913082569,0,0,0.0373743592849477,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0933303486317505,0.0237741990577735,0,0.0725618668317725,0.178294044486436,0,-0.0980353512377064,0.136388624912112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0600926605065745,0,0,0,0,-0.0567084457218201,0,0,0.0964907044435388,0,0,0
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0256000435883414,0,-0.0399705653208904,0.269869843747232,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167050120874084,0,0,0.022919082798648,0,0,0.494172046684624,0,0,0.22363149919401,0,0,0,0,0,0,0,0,0,0,0,0,0.109289448902861,0.134717986498045,0.18908192918211,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.183868913082569,0,0,0.0373743592849477,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0933303486317505,0.0237741990577735,0,0.0725618668317725,0.178294044486436,0,-0.0980353512377064,0.136388624912112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0600926605065745,0,0,0,0,-0.0567084457218201,0,0,0.0964907044435388,0,0,0
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0.134717986498045,0,0,0,0,0,0,0,0.0725618668317725,0,0,-0.058096946103454,0,-0.0530357228505046,0.0455667866586385,0.0362809334158863,0,0.208724899541412,0,0,0,0,0.18908192918211,0,0.134717986498045,0.18908192918211,0,0.192253264269947,0,0.0221493152424576,0.0362809334158863,0,0,0,0.0571305245683975,0.286657712054274,0,0.064326831147611,0.00421760575440433,0,0,0,0,0.0807152157790144,0,-0.120879483793741,0.154671398549206,0,0.079068157118253,0.0788533795767696,0,0,0,0.218808521808135,0.0956316326810243,0,0,-0.00308406831556212,-0.086808653969604,0,0,1.13229940869811,0.0725618668317725,0.305276766874835,0.0341012226941849,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0.0150684000103358,-0.00661546545645703,0,0,0,0,-0.0596464055045538,0,0,-0.184204226774456,0.0869561124880114,0,-0.293434250605025,0,-0.229827860178141,-0.049692657382036,-0.391018795891397,-0.0933303486317505,0.172971281851373,0.568026228552878,0.0274687443903294,0.0852419220337113,-0.0422758121479732,0,-0.0360783995912843,0.0147939173309871,0.217227487638673,-0.219639435991298,0,0,0,0.0800166473338686,0,-0.202260220333572,0.059609470108747,-0.00100768169371923,-0.165111703667234,-0.364379801987719,-0.0269388624906906,-0.0645787624406684,0.0912893695502708,-0.220044886023971,0,0.488504798904935,0,0.390014216934848,-0.0455811492743434,0.0189361728275435,0.0478185883938822,-0.194775677277175,0,-0.093963244876133,0.120737668104742,0.0362809334158863,0.0926278826024082,-0.0735338236445875,0,0.0240950348763447,-0.0760519553166173,0,0,0,0,0.0725618668317725,0.070178929820691,-0.350410213848056,-0.232855561555545,0,-0.064420960433124,0.0359798436495255,-0.102278971885162,0,-0.177710089051226,-0.129608894779033,-0.139658352926701,-0.0902359176832188,0,-0.0501137301816461,-0.169801677082782,0.0724008705336208,-0.141533531066563,-0.0584468268118252,-0.0997110037339564,0.00616026476324805,-0.198982014397206,0.0209873145933226,-0.051745829761641,0.626414084038286,0,0.205463194789948,-0.359125000399013,-0.117685542730322,-0.0390075975664859,0,0.0177726468697654,0,-0.00163289123946542,0,-0.0824485361377901,-0.0904177783177962,-0.439289374580686,0.119436280930414,0,-0.232714849360127,-0.467757806551462,0,-0.0450500963699201,0.0108037780622617,0,0.206221005638233,0.0603119815901432,-0.175369494448703,0.037722113899279,0,0.341780844096408,0.0725618668317725,0,0.0328705667206899,0.121112051208484,0,-0.0351866764546224,0.0396569332613634,-0.1014907656405,0.0187469130631106,0,0,-0.408308771120101,0,0,-0.0562038792325098,0.0609010018851077,-0.169767350803189,0.136687875448092,0,-0.108622809454255,0,0,-0.042809779467131,0,0.193451957072135,0,0,0.165411432856524,0.0721668528688808,0,0,0.280861274325174,-0.00321724939685742,0.134717986498045,0,0,0,0,0,0,-0.37652208786993,-0.0739720558912738,0.18908192918211,0,0,0,0,0,0,0.073490959435454,0,0.237391566872624,0.493129247863303,0,0.266996801258427,0,0,0,0,0.261446382040767,-0.0141546329126133,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0.134717986498045,0.0673589932490225,0,-0.057730457053664,-0.0210688042271635,0,0,0,0.200215382992451,0,0,0,0.0256778356400967,0.00193967670303641,0,0,0.165587421142701,0,-0.113270690151919,-0.00902001271506889,0,0.0565198624912064,0.094535855953712,-0.0104997741554123,0,0,0.0590259994326243,0,0.0725618668317725,0.134918478378703,-0.0823702229656663,0.0725618668317725,0,0,0,0,0,0,0.356588088972872,0.235701460755688,0.0362809334158863,0.0725618668317725,0,0,0,0,0,0,0,0,0,0.092199880700028,0.145167510214113,0.237391566872624,0,0,0,0,0,0,0.186419224871849,-0.237048992916068,0,0,0,0,0,0,0,0,-0.0503754437617383,0,0,0,0,0,0.183868913082569,0,0,0,0,0.30234812062184,0,0,-0.0399705653208904,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0507572192036752,-0.192567265180897,0,0,0,0,0,0,0,0.0817547907667818,0,0.237391566872624,0,0,0.0751975554731332,0,0,0,0.084285544392954,0,-0.0256000435883414,0,0.0725618668317725,0,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103639926664909,0.0362809334158863,0,0,0.391110742237873,0.0233743897736699,0.0789068992347577,0,0,0,0.233489437880521,0,0,0,0,0,0,0.00494050938735921,0.134717986498045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0.898190157227958,0,0,0.494172046684624,0.18908192918211,0,-0.0246738165515038,0,0,0,0,0,0,0.222753363804849,0.329932031163743,0.0203409806257653,0,0,0,0.170622414095267,0,0,0,0,0.383238585736543,0,0,0,0,0,0,0,0,0.18908192918211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167050120874084,0,0,0,0,0,0,0,0,0,0,0,0,0.094540964591055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237391566872624,0,0,0,0,0,0,0,-0.0340113632754165,0.0725618668317725,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157373098603985,0,0,0,0.0243053372155799,0,0,0,0,0,0,0.18908192918211,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0.121431324914937,0,0,0,0,0,0,0,0,0,0,0.0618995550192619,0,0,0.308366013733818,0,-0.0843766322300271,0,0,0,0,0,0.134717986498045,0,0,0,0,0,0.0725618668317725,0,0,0,0.134717986498045,0.445595217538389,0,0,0,0,0.0249247561708537,0,0,0,0,0,0,0.68294087028916,-0.0200695045528308,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196405364866939,0,0,0.128341267521866,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.42554499536004,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,-0.0567084457218201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176711570578473,0,0,0,0,0,0,0,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0912939801747325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0648440422183795,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320373131222512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603222980899905,0,0.0725618668317725,0,0,0,0,0,0,0.0458381655972959,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0699805007032551,0,0,0,0,0,0,0,0.177771512210091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.120185321013149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00295015132474885,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0.134717986498045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0125411498983244,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0.0356424072006391,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0.0362809334158863,0,0,0,0,0,0,0,0.0373743592849477,0,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22363149919401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0687578009147255,0,0,0,0,0,0,0,0,0.0725618668317725,0,-0.0412500915278073,0.0725618668317725,0,0,0,0.0725618668317725,0,0.0725618668317725,0.0232033987413411,0,0,0,0,0,0,0,0,0,0,0.133969735255067,0,0,-0.0422874684771159,0,-0.0549629818623329,0.0649959549853148,0,0,0,0,0,0.0198645285298018,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0336985757589857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109942121611882,0,0.249285701781864,0.0800950960722271,0,0.0725618668317725,0.152033409897598,0,0.0872498821538285,0.0868093928368467,0.0362809334158863,0,-0.174992895090299,0.280072137017856,0.134717986498045,0,0,0,0,0,0,0,0,0,0,0.18908192918211,0,0,0.259126420598899,0.0725618668317725,0,0,0.0157029206691734,0.011385638730605,0.0725618668317725,0.477460809588016,0,0,-0.00554344382051461,0,0,0,-0.0233975405418143
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0.134717986498045,0,0,0,0,0,0,0,0.0725618668317725,0,0,-0.058096946103454,0,-0.0530357228505046,0.0455667866586385,0.0362809334158863,0,0.208724899541412,0,0,0,0,0.18908192918211,0,0.134717986498045,0.18908192918211,0,0.192253264269947,0,0.0221493152424576,0.0362809334158863,0,0,0,0.0571305245683975,0.286657712054274,0,0.064326831147611,0.00421760575440433,0,0,0,0,0.0807152157790144,0,-0.120879483793741,0.154671398549206,0,0.079068157118253,0.0788533795767696,0,0,0,0.218808521808135,0.0956316326810243,0,0,-0.00308406831556212,-0.086808653969604,0,0,1.13229940869811,0.0725618668317725,0.305276766874835,0.0341012226941849,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0.0150684000103358,-0.00661546545645703,0,0,0,0,-0.0596464055045538,0,0,-0.184204226774456,0.0869561124880114,0,-0.293434250605025,0,-0.229827860178141,-0.049692657382036,-0.391018795891397,-0.0933303486317505,0.172971281851373,0.568026228552878,0.0274687443903294,0.0852419220337113,-0.0422758121479732,0,-0.0360783995912843,0.0147939173309871,0.217227487638673,-0.219639435991298,0,0,0,0.0800166473338686,0,-0.202260220333572,0.059609470108747,-0.00100768169371923,-0.165111703667234,-0.364379801987719,-0.0269388624906906,-0.0645787624406684,0.0912893695502708,-0.220044886023971,0,0.488504798904935,0,0.390014216934848,-0.0455811492743434,0.0189361728275435,0.0478185883938822,-0.194775677277175,0,-0.093963244876133,0.120737668104742,0.0362809334158863,0.0926278826024082,-0.0735338236445875,0,0.0240950348763447,-0.0760519553166173,0,0,0,0,0.0725618668317725,0.070178929820691,-0.350410213848056,-0.232855561555545,0,-0.064420960433124,0.0359798436495255,-0.102278971885162,0,-0.177710089051226,-0.129608894779033,-0.139658352926701,-0.0902359176832188,0,-0.0501137301816461,-0.169801677082782,0.0724008705336208,-0.141533531066563,-0.0584468268118252,-0.0997110037339564,0.00616026476324805,-0.198982014397206,0.0209873145933226,-0.051745829761641,0.626414084038286,0,0.205463194789948,-0.359125000399013,-0.117685542730322,-0.0390075975664859,0,0.0177726468697654,0,-0.00163289123946542,0,-0.0824485361377901,-0.0904177783177962,-0.439289374580686,0.119436280930414,0,-0.232714849360127,-0.467757806551462,0,-0.0450500963699201,0.0108037780622617,0,0.206221005638233,0.0603119815901432,-0.175369494448703,0.037722113899279,0,0.341780844096408,0.0725618668317725,0,0.0328705667206899,0.121112051208484,0,-0.0351866764546224,0.0396569332613634,-0.1014907656405,0.0187469130631106,0,0,-0.408308771120101,0,0,-0.0562038792325098,0.0609010018851077,-0.169767350803189,0.136687875448092,0,-0.108622809454255,0,0,-0.042809779467131,0,0.193451957072135,0,0,0.165411432856524,0.0721668528688808,0,0,0.280861274325174,-0.00321724939685742,0.134717986498045,0,0,0,0,0,0,-0.37652208786993,-0.0739720558912738,0.18908192918211,0,0,0,0,0,0,0.073490959435454,0,0.237391566872624,0.493129247863303,0,0.266996801258427,0,0,0,0,0.261446382040767,-0.0141546329126133,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0.134717986498045,0.0673589932490225,0,-0.057730457053664,-0.0210688042271635,0,0,0,0.200215382992451,0,0,0,0.0256778356400967,0.00193967670303641,0,0,0.165587421142701,0,-0.113270690151919,-0.00902001271506889,0,0.0565198624912064,0.094535855953712,-0.0104997741554123,0,0,0.0590259994326243,0,0.0725618668317725,0.134918478378703,-0.0823702229656663,0.0725618668317725,0,0,0,0,0,0,0.356588088972872,0.235701460755688,0.0362809334158863,0.0725618668317725,0,0,0,0,0,0,0,0,0,0.092199880700028,0.145167510214113,0.237391566872624,0,0,0,0,0,0,0.186419224871849,-0.237048992916068,0,0,0,0,0,0,0,0,-0.0503754437617383,0,0,0,0,0,0.183868913082569,0,0,0,0,0.30234812062184,0,0,-0.0399705653208904,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0507572192036752,-0.192567265180897,0,0,0,0,0,0,0,0.0817547907667818,0,0.237391566872624,0,0,0.0751975554731332,0,0,0,0.084285544392954,0,-0.0256000435883414,0,0.0725618668317725,0,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103639926664909,0.0362809334158863,0,0,0.391110742237873,0.0233743897736699,0.0789068992347577,0,0,0,0.233489437880521,0,0,0,0,0,0,0.00494050938735921,0.134717986498045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0.898190157227958,0,0,0.494172046684624,0.18908192918211,0,-0.0246738165515038,0,0,0,0,0,0,0.222753363804849,0.329932031163743,0.0203409806257653,0,0,0,0.170622414095267,0,0,0,0,0.383238585736543,0,0,0,0,0,0,0,0,0.18908192918211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167050120874084,0,0,0,0,0,0,0,0,0,0,0,0,0.094540964591055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237391566872624,0,0,0,0,0,0,0,-0.0340113632754165,0.0725618668317725,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157373098603985,0,0,0,0.0243053372155799,0,0,0,0,0,0,0.18908192918211,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0.121431324914937,0,0,0,0,0,0,0,0,0,0,0.0618995550192619,0,0,0.308366013733818,0,-0.0843766322300271,0,0,0,0,0,0.134717986498045,0,0,0,0,0,0.0725618668317725,0,0,0,0.134717986498045,0.445595217538389,0,0,0,0,0.0249247561708537,0,0,0,0,0,0,0.68294087028916,-0.0200695045528308,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196405364866939,0,0,0.128341267521866,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.42554499536004,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,-0.0567084457218201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176711570578473,0,0,0,0,0,0,0,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0912939801747325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0648440422183795,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320373131222512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603222980899905,0,0.0725618668317725,0,0,0,0,0,0,0.0458381655972959,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0699805007032551,0,0,0,0,0,0,0,0.177771512210091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.120185321013149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00295015132474885,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0.134717986498045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0125411498983244,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0.0356424072006391,0,0,0,0,0,0,0,0,0,0.0725618668317725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0.0362809334158863,0,0,0,0,0,0,0,0.0373743592849477,0,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22363149919401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0362809334158863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0687578009147255,0,0,0,0,0,0,0,0,0.0725618668317725,0,-0.0412500915278073,0.0725618668317725,0,0,0,0.0725618668317725,0,0.0725618668317725,0.0232033987413411,0,0,0,0,0,0,0,0,0,0,0.133969735255067,0,0,-0.0422874684771159,0,-0.0549629818623329,0.0649959549853148,0,0,0,0,0,0.0198645285298018,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0336985757589857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109942121611882,0,0.249285701781864,0.0800950960722271,0,0.0725618668317725,0.152033409897598,0,0.0872498821538285,0.0868093928368467,0.0362809334158863,0,-0.174992895090299,0.280072137017856,0.134717986498045,0,0,0,0,0,0,0,0,0,0,0.18908192918211,0,0,0.259126420598899,0.0725618668317725,0,0,0.0157029206691734,0.011385638730605,0.0725618668317725,0.477460809588016,0,0,-0.00554344382051461,0,0,0,-0.0233975405418143
Line 96: Line 100:
|top_motifs=ALX4:1.85540000246;SRF:1.69807659509;HIF1A:1.51875605608;HSF1,2:1.5185975209;PAX1,9:1.49453281609;ZNF238:1.48536779288;TAL1_TCF{3,4,12}:1.46789934041;TEF:1.35963240949;NFATC1..3:1.27216335827;HMGA1,2:1.24700083294;ZNF384:1.22506306722;EN1,2:1.04382271759;UFEwm:1.03098559886;NKX2-2,8:0.999445364783;NKX3-1:0.986677783731;TLX2:0.945777843892;CDC5L:0.934462328259;PAX8:0.918219942472;FOXL1:0.856260752048;MAFB:0.840978407334;ESR1:0.838396928118;IKZF1:0.810591997138;TEAD1:0.782646551137;EVI1:0.773296638733;MYBL2:0.764881402654;POU3F1..4:0.75548388537;HOX{A4,D4}:0.732781254813;NFE2L2:0.729541350657;PPARG:0.708312483586;NFE2L1:0.699937513602;BACH2:0.688115545173;PRDM1:0.679568239296;GZF1:0.669682349013;NKX2-1,4:0.666035085728;ATF6:0.65500246052;AHR_ARNT_ARNT2:0.641577243557;FOS_FOS{B,L1}_JUN{B,D}:0.640296917799;ZBTB6:0.637296711796;HOX{A5,B5}:0.612676404945;TLX1..3_NFIC{dimer}:0.608105544316;TP53:0.607133669667;NANOG{mouse}:0.576126868686;TBP:0.570275265389;NFIX:0.559380422292;PAX3,7:0.553630552222;bHLH_family:0.548516673052;PAX4:0.532054986378;ZIC1..3:0.515942268985;GTF2A1,2:0.514212470928;XBP1:0.510823063432;RXR{A,B,G}:0.45544040876;ARID5B:0.449084411831;HBP1_HMGB_SSRP1_UBTF:0.431575302353;GLI1..3:0.428956378398;SPZ1:0.427803442456;EBF1:0.419184300241;HLF:0.407674558812;PAX2:0.404818408114;GTF2I:0.398857498468;NFE2:0.389885505442;SOX17:0.353595956747;GATA4:0.339854438867;JUN:0.327609165447;ESRRA:0.318655724921;TBX4,5:0.317773886221;FOSL2:0.316688260336;NHLH1,2:0.294812971786;CREB1:0.284843113814;NR3C1:0.277362606665;TFCP2:0.263093659298;KLF4:0.258755065975;GFI1B:0.255882086163;RUNX1..3:0.247820588196;HES1:0.2475299758;AR:0.24065065148;ATF2:0.232732264939;TFAP4:0.220689035969;MTE{core}:0.214302441649;MZF1:0.207457654881;TFDP1:0.206685655018;NFKB1_REL_RELA:0.205852514187;STAT5{A,B}:0.188929603613;SREBF1,2:0.173824202615;AIRE:0.171298130374;ALX1:0.170079710264;LEF1_TCF7_TCF7L1,2:0.156358439008;HMX1:0.144911932645;SMAD1..7,9:0.140351500035;ZBTB16:0.138882215695;LHX3,4:0.136992075349;HNF1A:0.12919611061;ONECUT1,2:0.127235701614;NR6A1:0.118620986565;ZFP161:0.101759966832;TFAP2{A,C}:0.0893003414723;MEF2{A,B,C,D}:0.0855063724096;CRX:0.084074253647;RFX1:0.0779329602849;NKX6-1,2:0.0627881869371;ATF5_CREB3:0.061251213627;EGR1..3:0.059320946921;NKX3-2:0.0469513189435;XCPE1{core}:0.0334234938224;MED-1{core}:0.0262799368422;ELK1,4_GABP{A,B1}:0.0203485661674;DBP:-0.00242622158768;MAZ:-0.00397326990078;SOX5:-0.0129452446877;PBX1:-0.0142109928075;BPTF:-0.0160054987034;POU2F1..3:-0.0298915067538;SOX2:-0.0375595262497;TFAP2B:-0.0417949670507;YY1:-0.0589250376698;PATZ1:-0.0649453319662;MYFfamily:-0.0985213183547;RFX2..5_RFXANK_RFXAP:-0.101376569433;ELF1,2,4:-0.119971980101;NFIL3:-0.13330988104;REST:-0.134335397287;IRF1,2:-0.154410343028;STAT1,3:-0.156318834997;GCM1,2:-0.15914342309;RXRA_VDR{dimer}:-0.15927413367;ETS1,2:-0.162194384237;IKZF2:-0.18671146857;ZNF143:-0.202109049656;FOX{D1,D2}:-0.213110816085;CDX1,2,4:-0.222274768575;MYB:-0.23960500671;FOXD3:-0.242935538427;ZNF423:-0.243250403876;POU5F1:-0.263758507005;NRF1:-0.263908097058;RREB1:-0.303664339397;FOXM1:-0.306249647726;NR5A1,2:-0.315190928879;RORA:-0.31615672207;FOXN1:-0.329184193983;STAT2,4,6:-0.329436029224;GFI1:-0.332334853138;SPI1:-0.334939012386;HNF4A_NR2F1,2:-0.335384087479;SP1:-0.347943014675;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.358606377217;GATA6:-0.362700609257;HIC1:-0.382163608241;SOX{8,9,10}:-0.396740791512;DMAP1_NCOR{1,2}_SMARC:-0.41926279715;E2F1..5:-0.424507105336;OCT4_SOX2{dimer}:-0.437364379397;CEBPA,B_DDIT3:-0.442660838341;TOPORS:-0.446437222038;ATF4:-0.452089104216;IRF7:-0.452213731823;MTF1:-0.456669243398;FOXQ1:-0.458881685177;TGIF1:-0.463262637126;NR1H4:-0.465642288655;SPIB:-0.467948121986;POU1F1:-0.48020208432;FOX{I1,J2}:-0.486642520861;EP300:-0.50886652325;PRRX1,2:-0.517306591112;FOXP1:-0.532725187428;PAX6:-0.533520773896;POU6F1:-0.538022025472;FOXO1,3,4:-0.560968082459;ZNF148:-0.571348737549;HOXA9_MEIS1:-0.571823803259;FOXA2:-0.579386802609;PAX5:-0.579806093697;HAND1,2:-0.582697004784;ADNP_IRX_SIX_ZHX:-0.587012609697;NANOG:-0.604481342122;LMO2:-0.733815217444;NKX2-3_NKX2-5:-0.742267060852;NFY{A,B,C}:-0.778541345039;FOX{F1,F2,J1}:-0.830894970213;PDX1:-0.843898393816;CUX2:-0.885820887087;ZEB1:-0.962414389632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.981405485299;RBPJ:-0.990572851419;T:-1.01240559138;SNAI1..3:-1.05186167111;BREu{core}:-1.10288427297;FOXP3:-1.10765884209;VSX1,2:-1.33130018326;MYOD1:-1.36278381192;PITX1..3:-1.49771008879;HOX{A6,A7,B6,B7}:-1.66477672442
|top_motifs=ALX4:1.85540000246;SRF:1.69807659509;HIF1A:1.51875605608;HSF1,2:1.5185975209;PAX1,9:1.49453281609;ZNF238:1.48536779288;TAL1_TCF{3,4,12}:1.46789934041;TEF:1.35963240949;NFATC1..3:1.27216335827;HMGA1,2:1.24700083294;ZNF384:1.22506306722;EN1,2:1.04382271759;UFEwm:1.03098559886;NKX2-2,8:0.999445364783;NKX3-1:0.986677783731;TLX2:0.945777843892;CDC5L:0.934462328259;PAX8:0.918219942472;FOXL1:0.856260752048;MAFB:0.840978407334;ESR1:0.838396928118;IKZF1:0.810591997138;TEAD1:0.782646551137;EVI1:0.773296638733;MYBL2:0.764881402654;POU3F1..4:0.75548388537;HOX{A4,D4}:0.732781254813;NFE2L2:0.729541350657;PPARG:0.708312483586;NFE2L1:0.699937513602;BACH2:0.688115545173;PRDM1:0.679568239296;GZF1:0.669682349013;NKX2-1,4:0.666035085728;ATF6:0.65500246052;AHR_ARNT_ARNT2:0.641577243557;FOS_FOS{B,L1}_JUN{B,D}:0.640296917799;ZBTB6:0.637296711796;HOX{A5,B5}:0.612676404945;TLX1..3_NFIC{dimer}:0.608105544316;TP53:0.607133669667;NANOG{mouse}:0.576126868686;TBP:0.570275265389;NFIX:0.559380422292;PAX3,7:0.553630552222;bHLH_family:0.548516673052;PAX4:0.532054986378;ZIC1..3:0.515942268985;GTF2A1,2:0.514212470928;XBP1:0.510823063432;RXR{A,B,G}:0.45544040876;ARID5B:0.449084411831;HBP1_HMGB_SSRP1_UBTF:0.431575302353;GLI1..3:0.428956378398;SPZ1:0.427803442456;EBF1:0.419184300241;HLF:0.407674558812;PAX2:0.404818408114;GTF2I:0.398857498468;NFE2:0.389885505442;SOX17:0.353595956747;GATA4:0.339854438867;JUN:0.327609165447;ESRRA:0.318655724921;TBX4,5:0.317773886221;FOSL2:0.316688260336;NHLH1,2:0.294812971786;CREB1:0.284843113814;NR3C1:0.277362606665;TFCP2:0.263093659298;KLF4:0.258755065975;GFI1B:0.255882086163;RUNX1..3:0.247820588196;HES1:0.2475299758;AR:0.24065065148;ATF2:0.232732264939;TFAP4:0.220689035969;MTE{core}:0.214302441649;MZF1:0.207457654881;TFDP1:0.206685655018;NFKB1_REL_RELA:0.205852514187;STAT5{A,B}:0.188929603613;SREBF1,2:0.173824202615;AIRE:0.171298130374;ALX1:0.170079710264;LEF1_TCF7_TCF7L1,2:0.156358439008;HMX1:0.144911932645;SMAD1..7,9:0.140351500035;ZBTB16:0.138882215695;LHX3,4:0.136992075349;HNF1A:0.12919611061;ONECUT1,2:0.127235701614;NR6A1:0.118620986565;ZFP161:0.101759966832;TFAP2{A,C}:0.0893003414723;MEF2{A,B,C,D}:0.0855063724096;CRX:0.084074253647;RFX1:0.0779329602849;NKX6-1,2:0.0627881869371;ATF5_CREB3:0.061251213627;EGR1..3:0.059320946921;NKX3-2:0.0469513189435;XCPE1{core}:0.0334234938224;MED-1{core}:0.0262799368422;ELK1,4_GABP{A,B1}:0.0203485661674;DBP:-0.00242622158768;MAZ:-0.00397326990078;SOX5:-0.0129452446877;PBX1:-0.0142109928075;BPTF:-0.0160054987034;POU2F1..3:-0.0298915067538;SOX2:-0.0375595262497;TFAP2B:-0.0417949670507;YY1:-0.0589250376698;PATZ1:-0.0649453319662;MYFfamily:-0.0985213183547;RFX2..5_RFXANK_RFXAP:-0.101376569433;ELF1,2,4:-0.119971980101;NFIL3:-0.13330988104;REST:-0.134335397287;IRF1,2:-0.154410343028;STAT1,3:-0.156318834997;GCM1,2:-0.15914342309;RXRA_VDR{dimer}:-0.15927413367;ETS1,2:-0.162194384237;IKZF2:-0.18671146857;ZNF143:-0.202109049656;FOX{D1,D2}:-0.213110816085;CDX1,2,4:-0.222274768575;MYB:-0.23960500671;FOXD3:-0.242935538427;ZNF423:-0.243250403876;POU5F1:-0.263758507005;NRF1:-0.263908097058;RREB1:-0.303664339397;FOXM1:-0.306249647726;NR5A1,2:-0.315190928879;RORA:-0.31615672207;FOXN1:-0.329184193983;STAT2,4,6:-0.329436029224;GFI1:-0.332334853138;SPI1:-0.334939012386;HNF4A_NR2F1,2:-0.335384087479;SP1:-0.347943014675;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.358606377217;GATA6:-0.362700609257;HIC1:-0.382163608241;SOX{8,9,10}:-0.396740791512;DMAP1_NCOR{1,2}_SMARC:-0.41926279715;E2F1..5:-0.424507105336;OCT4_SOX2{dimer}:-0.437364379397;CEBPA,B_DDIT3:-0.442660838341;TOPORS:-0.446437222038;ATF4:-0.452089104216;IRF7:-0.452213731823;MTF1:-0.456669243398;FOXQ1:-0.458881685177;TGIF1:-0.463262637126;NR1H4:-0.465642288655;SPIB:-0.467948121986;POU1F1:-0.48020208432;FOX{I1,J2}:-0.486642520861;EP300:-0.50886652325;PRRX1,2:-0.517306591112;FOXP1:-0.532725187428;PAX6:-0.533520773896;POU6F1:-0.538022025472;FOXO1,3,4:-0.560968082459;ZNF148:-0.571348737549;HOXA9_MEIS1:-0.571823803259;FOXA2:-0.579386802609;PAX5:-0.579806093697;HAND1,2:-0.582697004784;ADNP_IRX_SIX_ZHX:-0.587012609697;NANOG:-0.604481342122;LMO2:-0.733815217444;NKX2-3_NKX2-5:-0.742267060852;NFY{A,B,C}:-0.778541345039;FOX{F1,F2,J1}:-0.830894970213;PDX1:-0.843898393816;CUX2:-0.885820887087;ZEB1:-0.962414389632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.981405485299;RBPJ:-0.990572851419;T:-1.01240559138;SNAI1..3:-1.05186167111;BREu{core}:-1.10288427297;FOXP3:-1.10765884209;VSX1,2:-1.33130018326;MYOD1:-1.36278381192;PITX1..3:-1.49771008879;HOX{A6,A7,B6,B7}:-1.66477672442
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11759-123H4;search_select_hide=table117:FF:11759-123H4
}}
}}

Latest revision as of 18:18, 4 June 2020

Name:mesenchymal precursor cell - ovarian cancer right ovary, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12375
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005850
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12375 CAGE DRX008564 DRR009436
Accession ID Hg19

Library idBAMCTSS
CNhs12375 DRZ000861 DRZ002246
Accession ID Hg38

Library idBAMCTSS
CNhs12375 DRZ012211 DRZ013596
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0529
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0213
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.32
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0699
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0426
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.64
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0459
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.121
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0793
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.259
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.135
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.135
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0726
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.117
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0726
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.135
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.436
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.45
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.592
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.509
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.631
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12375

Jaspar motifP-value
MA0002.20.887
MA0003.10.929
MA0004.10.9
MA0006.10.492
MA0007.10.367
MA0009.10.454
MA0014.10.597
MA0017.10.37
MA0018.20.0454
MA0019.10.483
MA0024.13.44312e-6
MA0025.10.381
MA0027.10.577
MA0028.10.152
MA0029.10.857
MA0030.10.266
MA0031.10.181
MA0035.20.0155
MA0038.10.0214
MA0039.20.00129
MA0040.10.559
MA0041.10.819
MA0042.10.667
MA0043.10.0391
MA0046.10.193
MA0047.20.755
MA0048.10.0921
MA0050.10.0159
MA0051.10.0688
MA0052.10.977
MA0055.10.512
MA0057.10.779
MA0058.10.961
MA0059.10.734
MA0060.12.05881e-9
MA0061.10.0346
MA0062.27.98147e-5
MA0065.20.0134
MA0066.10.562
MA0067.10.734
MA0068.10.0301
MA0069.10.921
MA0070.10.894
MA0071.10.64
MA0072.10.529
MA0073.10.836
MA0074.10.184
MA0076.10.0334
MA0077.10.442
MA0078.10.765
MA0079.20.0818
MA0080.23.06691e-4
MA0081.10.0265
MA0083.14.0093e-9
MA0084.10.0406
MA0087.10.739
MA0088.10.972
MA0090.10.00163
MA0091.10.267
MA0092.10.669
MA0093.10.672
MA0099.22.11963e-16
MA0100.10.699
MA0101.10.00882
MA0102.20.911
MA0103.13.6134e-5
MA0104.20.245
MA0105.10.00523
MA0106.10.175
MA0107.10.00452
MA0108.20.00117
MA0111.10.465
MA0112.20.0834
MA0113.10.396
MA0114.10.0292
MA0115.10.0416
MA0116.10.758
MA0117.10.38
MA0119.10.171
MA0122.10.601
MA0124.10.654
MA0125.10.0668
MA0131.10.768
MA0135.10.109
MA0136.12.24872e-4
MA0137.20.535
MA0138.20.699
MA0139.10.685
MA0140.10.115
MA0141.10.817
MA0142.10.297
MA0143.10.828
MA0144.10.598
MA0145.10.992
MA0146.10.183
MA0147.10.386
MA0148.10.818
MA0149.10.926
MA0150.10.00139
MA0152.10.00143
MA0153.10.606
MA0154.10.406
MA0155.10.416
MA0156.10.0131
MA0157.10.197
MA0159.10.45
MA0160.10.335
MA0162.10.142
MA0163.10.0691
MA0164.10.675
MA0258.10.815
MA0259.10.831



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12375

Novel motifP-value
10.783
100.244
1000.259
1010.582
1020.253
1030.776
1040.947
1050.853
1060.151
1070.387
1080.904
1090.986
110.668
1100.0534
1110.316
1120.539
1130.00467
1140.464
1150.485
1160.344
1170.177
1180.719
1190.275
120.458
1200.0814
1210.876
1220.0619
1230.00372
1240.458
1250.99
1260.695
1270.984
1280.408
1290.573
130.446
1300.421
1310.0365
1320.758
1330.888
1340.12
1350.733
1360.481
1370.862
1380.557
1390.406
140.178
1400.356
1410.511
1420.622
1430.0352
1440.618
1450.546
1460.581
1470.0457
1480.799
1490.308
150.443
1500.0517
1510.487
1520.192
1530.825
1540.82
1550.00328
1560.285
1570.31
1580.038
1590.0929
160.0226
1600.317
1610.359
1620.614
1630.221
1640.0798
1650.928
1660.438
1670.942
1680.794
1690.455
170.286
180.0656
190.0928
20.596
200.809
210.891
220.716
230.0113
240.429
250.19
260.301
270.757
280.255
290.204
30.434
300.776
310.77
323.05195e-7
330.863
340.903
350.208
360.108
370.072
380.734
390.383
40.499
400.145
410.816
420.981
430.656
440.33
450.54
460.328
470.515
480.644
490.221
50.306
500.446
510.899
520.835
530.125
540.977
550.184
560.512
570.955
580.217
590.768
60.321
600.57
610.894
620.969
630.715
640.856
650.358
660.132
670.508
680.891
690.386
70.31
700.874
710.413
720.77
730.0801
740.0477
750.463
760.537
770.0243
780.255
790.0596
80.676
800.767
810.545
820.777
830.872
840.915
850.0367
860.201
870.311
880.714
890.214
90.308
900.675
910.924
920.528
930.938
940.666
950.464
960.481
970.0971
980.0992
990.327



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12375


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002118 (right ovary)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000275 (human mesenchymal precursor cell- ovarian cancer-right ovary sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11759-123H4&oldid=4576707"