FFCP PHASE1:Hg19::chr11:70116779..70116858,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:70116779..70116858,+ to FFCP PHASE1:Hg19::chr11:70116779..70116858,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8500 | |EntrezGene=8500 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9245 | |HGNC=9245 | ||
|TSSclassifier=strong | |||
|UniProt=Q13136,F5H1G2 | |UniProt=Q13136,F5H1G2 | ||
|association_with_transcript=0bp_to_ENST00000253925,ENST00000389547,ENST00000544950,NM_003626,NM_177423,NR_045286,uc001opn.1,uc001opo.2,uc001opp.2_5end | |||
|cluster_id=chr11:70116779..70116858,+ | |||
|description=CAGE_peak_1_at_PPFIA1_5end | |||
|id=chr11:70116779..70116858,+ | |||
|ontology_enrichment_celltype=CL:0000766!9.26e-17!76;CL:0000557!2.35e-16!71;CL:0002009!2.48e-16!65;CL:0002194!9.82e-16!63;CL:0000576!9.82e-16!63;CL:0000040!9.82e-16!63;CL:0000559!9.82e-16!63;CL:0002057!1.31e-15!42;CL:0000860!1.95e-15!45;CL:0000839!5.18e-14!70;CL:0000763!7.72e-10!112;CL:0000049!7.72e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.48e-17;33!CL:0002057;1.48e-17;33!CL:0000473;6.72e-15;39!CL:0000234;6.72e-15;39!CL:0000576;3.16e-10;48!CL:0000766;3.10e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.41e-16,72;CL:0000473,3.55e-16,48;CL:0000234,3.55e-16,48;CL:0002009,5.85e-16,61;CL:0000557,5.91e-16,67;CL:0000860,1.31e-15,42;CL:0002057,1.31e-15,42;CL:0002194,2.31e-15,59;CL:0000576,2.31e-15,59;CL:0000040,2.31e-15,59;CL:0000559,2.31e-15,59;CL:0000839,1.37e-13,66;CL:0000763,2.20e-09,108;CL:0000049,2.20e-09,108 | |||
|ontology_enrichment_development_v019=CL:0002057;4.88e-12;42!UBERON:0006601;1.09e-07;82 | |||
|ontology_enrichment_disease=DOID:0050687!7.39e-11!143;DOID:305!1.62e-07!106;DOID:162!8.42e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,7.39e-11,143;DOID:305,1.62e-07,106;DOID:162,8.42e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.42e-16!115;UBERON:0001017!2.25e-16!82;UBERON:0000073!2.50e-16!94;UBERON:0001016!2.50e-16!94;UBERON:0005743!2.29e-15!86;UBERON:0001049!2.41e-15!57;UBERON:0005068!2.41e-15!57;UBERON:0006241!2.41e-15!57;UBERON:0007135!2.41e-15!57;UBERON:0000955!1.93e-14!69;UBERON:0006238!1.93e-14!69;UBERON:0002616!7.46e-13!59;UBERON:0003080!1.42e-12!42;UBERON:0002780!5.10e-12!41;UBERON:0001890!5.10e-12!41;UBERON:0006240!5.10e-12!41;UBERON:0002371!7.49e-12!80;UBERON:0001474!1.04e-11!86;UBERON:0002020!2.14e-09!34;UBERON:0003528!2.14e-09!34;UBERON:0001893!2.57e-09!34;UBERON:0002346!4.25e-09!90;UBERON:0002791!4.26e-09!33;UBERON:0002390!9.14e-09!102;UBERON:0003061!9.14e-09!102;UBERON:0000062!1.29e-08!511;UBERON:0001869!1.31e-08!32;UBERON:0003075!1.60e-08!86;UBERON:0007284!1.60e-08!86;UBERON:0004765!3.43e-08!101;UBERON:0001434!3.43e-08!101;UBERON:0000924!9.46e-08!173;UBERON:0006601!9.46e-08!173;UBERON:0004121!2.93e-07!169;UBERON:0002193!3.38e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.85e-09;41!UBERON:0001890;3.85e-09;41!UBERON:0000073;2.87e-08;53!UBERON:0002616;2.87e-08;53!UBERON:0003528;4.41e-08;34!UBERON:0002020;4.41e-08;34!UBERON:0001893;4.85e-08;34!UBERON:0002791;5.53e-08;32!UBERON:0001869;6.13e-08;32!UBERON:0001017;2.04e-07;75!UBERON:0001016;2.12e-07;83!UBERON:0000955;7.83e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.71e-17,89;UBERON:0007023,3.22e-16,114;UBERON:0001017,7.44e-16,81;UBERON:0001049,8.64e-15,56;UBERON:0005068,8.64e-15,56;UBERON:0006241,8.64e-15,56;UBERON:0007135,8.64e-15,56;UBERON:0000955,6.34e-14,68;UBERON:0006238,6.34e-14,68;UBERON:0000073,2.80e-13,53;UBERON:0002616,2.80e-13,53;UBERON:0002780,5.10e-12,41;UBERON:0001890,5.10e-12,41;UBERON:0003080,5.10e-12,41;UBERON:0006240,5.10e-12,41;UBERON:0002371,2.13e-11,76;UBERON:0001474,3.00e-11,82;UBERON:0003528,2.14e-09,34;UBERON:0002020,2.14e-09,34;UBERON:0001893,2.57e-09,34;UBERON:0002791,1.18e-08,32;UBERON:0001869,1.31e-08,32;UBERON:0002390,2.54e-08,98;UBERON:0003061,2.54e-08,98;UBERON:0002405,3.40e-08,93;UBERON:0004765,1.03e-07,90;UBERON:0002346,1.09e-07,86;UBERON:0003075,3.88e-07,82;UBERON:0007284,3.88e-07,82;UBERON:0002193,8.77e-07,108;UBERON:0001434,9.98e-07,100 | |||
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| ||
|short_description=p1@PPFIA1 | |||
}} | }} |
Latest revision as of 22:38, 19 September 2015
Short description: | p1@PPFIA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPFIA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000253925, ENST00000389547, ENST00000544950, NM_003626, NM_177423, NR_045286, uc001opn.1, uc001opo.2, uc001opp.2_5end |
EntrezGene: | PPFIA1 |
HGNC: | 9245 |
UniProt: | Q13136F5H1G2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.41e-16 | 72 |
defensive cell | 3.55e-16 | 48 |
phagocyte | 3.55e-16 | 48 |
macrophage dendritic cell progenitor | 5.85e-16 | 61 |
granulocyte monocyte progenitor cell | 5.91e-16 | 67 |
classical monocyte | 1.31e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.31e-15 | 42 |
monopoietic cell | 2.31e-15 | 59 |
monocyte | 2.31e-15 | 59 |
monoblast | 2.31e-15 | 59 |
promonocyte | 2.31e-15 | 59 |
myeloid lineage restricted progenitor cell | 1.37e-13 | 66 |
myeloid cell | 2.20e-09 | 108 |
common myeloid progenitor | 2.20e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.71e-17 | 89 |
adult organism | 3.22e-16 | 114 |
central nervous system | 7.44e-16 | 81 |
neural tube | 8.64e-15 | 56 |
neural rod | 8.64e-15 | 56 |
future spinal cord | 8.64e-15 | 56 |
neural keel | 8.64e-15 | 56 |
brain | 6.34e-14 | 68 |
future brain | 6.34e-14 | 68 |
regional part of nervous system | 2.80e-13 | 53 |
regional part of brain | 2.80e-13 | 53 |
regional part of forebrain | 5.10e-12 | 41 |
forebrain | 5.10e-12 | 41 |
anterior neural tube | 5.10e-12 | 41 |
future forebrain | 5.10e-12 | 41 |
bone marrow | 2.13e-11 | 76 |
bone element | 3.00e-11 | 82 |
brain grey matter | 2.14e-09 | 34 |
gray matter | 2.14e-09 | 34 |
telencephalon | 2.57e-09 | 34 |
regional part of telencephalon | 1.18e-08 | 32 |
cerebral hemisphere | 1.31e-08 | 32 |
hematopoietic system | 2.54e-08 | 98 |
blood island | 2.54e-08 | 98 |
immune system | 3.40e-08 | 93 |
skeletal element | 1.03e-07 | 90 |
neurectoderm | 1.09e-07 | 86 |
neural plate | 3.88e-07 | 82 |
presumptive neural plate | 3.88e-07 | 82 |
hemolymphoid system | 8.77e-07 | 108 |
skeletal system | 9.98e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 7.39e-11 | 143 |
carcinoma | 1.62e-07 | 106 |
cancer | 8.42e-07 | 235 |