FFCP PHASE1:Hg19::chr16:4897266..4897312,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:4897266..4897312,- to FFCP PHASE1:Hg19::chr16:4897266..4897312,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84656 | |EntrezGene=84656 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24434 | |HGNC=24434 | ||
|TSSclassifier=strong | |||
|UniProt=Q49A26 | |UniProt=Q49A26 | ||
|association_with_transcript=0bp_to_ENST00000381983,ENST00000436648,NM_032569,uc002cxx.3,uc002cxy.2,uc002cya.2,uc010uxv.1_5end | |||
|cluster_id=chr16:4897266..4897312,- | |||
|description=CAGE_peak_1_at_GLYR1_5end | |||
|id=chr16:4897266..4897312,- | |||
|ontology_enrichment_celltype=CL:0000763!3.70e-12!112;CL:0000049!3.70e-12!112;CL:0000988!7.21e-11!182;CL:0000037!3.72e-10!172;CL:0000566!3.72e-10!172;CL:0002032!6.63e-10!165;CL:0000837!6.63e-10!165;CL:0000766!1.45e-07!76;CL:0000738!1.64e-07!140 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,2.94e-12,108;CL:0000049,2.94e-12,108;CL:0000988,1.11e-10,177;CL:0000037,3.88e-10,168;CL:0002032,6.86e-10,161;CL:0000837,6.86e-10,161;CL:0000766,1.19e-07,72;CL:0000738,1.70e-07,136 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.92e-34!115;UBERON:0001049!2.83e-23!57;UBERON:0005068!2.83e-23!57;UBERON:0006241!2.83e-23!57;UBERON:0007135!2.83e-23!57;UBERON:0001017!8.97e-21!82;UBERON:0005743!1.02e-20!86;UBERON:0000073!5.07e-20!94;UBERON:0001016!5.07e-20!94;UBERON:0002616!1.46e-19!59;UBERON:0002780!2.04e-19!41;UBERON:0001890!2.04e-19!41;UBERON:0006240!2.04e-19!41;UBERON:0000955!5.25e-19!69;UBERON:0006238!5.25e-19!69;UBERON:0003080!1.17e-18!42;UBERON:0001893!1.54e-16!34;UBERON:0002020!3.61e-16!34;UBERON:0003528!3.61e-16!34;UBERON:0003075!6.62e-16!86;UBERON:0007284!6.62e-16!86;UBERON:0002791!6.73e-16!33;UBERON:0001869!1.17e-15!32;UBERON:0002346!4.44e-14!90;UBERON:0002619!5.40e-14!22;UBERON:0001950!9.09e-13!20;UBERON:0000956!1.12e-12!25;UBERON:0000203!1.12e-12!25;UBERON:0003056!8.18e-12!61;UBERON:0002193!5.45e-11!112;UBERON:0002390!6.52e-10!102;UBERON:0003061!6.52e-10!102;UBERON:0000153!3.54e-08!129;UBERON:0007811!3.54e-08!129;UBERON:0000033!7.33e-08!123;UBERON:0004121!2.41e-07!169;UBERON:0002405!2.54e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.68e-14;34!UBERON:0002780;3.21e-14;41!UBERON:0001890;3.21e-14;41!UBERON:0001869;3.29e-14;32!UBERON:0002619;5.02e-14;22!UBERON:0002791;5.33e-14;32!UBERON:0003528;5.80e-14;34!UBERON:0002020;5.80e-14;34!UBERON:0000073;2.62e-13;53!UBERON:0002616;2.62e-13;53!UBERON:0001950;8.41e-13;20!UBERON:0000956;9.42e-13;25!UBERON:0000203;9.42e-13;25!UBERON:0001017;7.97e-10;75!UBERON:0007023;1.14e-09;114!UBERON:0000955;1.04e-08;68!UBERON:0001016;2.94e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.37e-33,114;UBERON:0001049,5.45e-24,56;UBERON:0005068,5.45e-24,56;UBERON:0006241,5.45e-24,56;UBERON:0007135,5.45e-24,56;UBERON:0000073,1.56e-22,53;UBERON:0002616,1.56e-22,53;UBERON:0001017,2.88e-21,81;UBERON:0001016,1.86e-20,89;UBERON:0000955,1.58e-19,68;UBERON:0006238,1.58e-19,68;UBERON:0002780,2.04e-19,41;UBERON:0001890,2.04e-19,41;UBERON:0003080,2.04e-19,41;UBERON:0006240,2.04e-19,41;UBERON:0001893,1.54e-16,34;UBERON:0003528,3.61e-16,34;UBERON:0002020,3.61e-16,34;UBERON:0001869,1.17e-15,32;UBERON:0002791,2.12e-15,32;UBERON:0003075,3.14e-15,82;UBERON:0007284,3.14e-15,82;UBERON:0002619,5.40e-14,22;UBERON:0002346,2.08e-13,86;UBERON:0001950,9.09e-13,20;UBERON:0000956,1.12e-12,25;UBERON:0000203,1.12e-12,25;UBERON:0003056,3.36e-12,61;UBERON:0002193,4.58e-11,108;UBERON:0002390,5.46e-10,98;UBERON:0003061,5.46e-10,98;UBERON:0010371,8.82e-10,104;UBERON:0011216,1.85e-07,223;UBERON:0002405,3.38e-07,93 | |||
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| ||
|short_description=p1@GLYR1 | |||
}} | }} |
Latest revision as of 19:30, 16 September 2015
Short description: | p1@GLYR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GLYR1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000381983, ENST00000436648, NM_032569, uc002cxx.3, uc002cxy.2, uc002cya.2, uc010uxv.1_5end |
EntrezGene: | GLYR1 |
HGNC: | 24434 |
UniProt: | Q49A26 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 2.94e-12 | 108 |
common myeloid progenitor | 2.94e-12 | 108 |
hematopoietic cell | 1.11e-10 | 177 |
hematopoietic stem cell | 3.88e-10 | 168 |
hematopoietic oligopotent progenitor cell | 6.86e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.86e-10 | 161 |
myeloid leukocyte | 1.19e-07 | 72 |
leukocyte | 1.70e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.37e-33 | 114 |
neural tube | 5.45e-24 | 56 |
neural rod | 5.45e-24 | 56 |
future spinal cord | 5.45e-24 | 56 |
neural keel | 5.45e-24 | 56 |
regional part of nervous system | 1.56e-22 | 53 |
regional part of brain | 1.56e-22 | 53 |
central nervous system | 2.88e-21 | 81 |
nervous system | 1.86e-20 | 89 |
brain | 1.58e-19 | 68 |
future brain | 1.58e-19 | 68 |
regional part of forebrain | 2.04e-19 | 41 |
forebrain | 2.04e-19 | 41 |
anterior neural tube | 2.04e-19 | 41 |
future forebrain | 2.04e-19 | 41 |
telencephalon | 1.54e-16 | 34 |
brain grey matter | 3.61e-16 | 34 |
gray matter | 3.61e-16 | 34 |
cerebral hemisphere | 1.17e-15 | 32 |
regional part of telencephalon | 2.12e-15 | 32 |
neural plate | 3.14e-15 | 82 |
presumptive neural plate | 3.14e-15 | 82 |
regional part of cerebral cortex | 5.40e-14 | 22 |
neurectoderm | 2.08e-13 | 86 |
neocortex | 9.09e-13 | 20 |
cerebral cortex | 1.12e-12 | 25 |
pallium | 1.12e-12 | 25 |
pre-chordal neural plate | 3.36e-12 | 61 |
hemolymphoid system | 4.58e-11 | 108 |
hematopoietic system | 5.46e-10 | 98 |
blood island | 5.46e-10 | 98 |
ecto-epithelium | 8.82e-10 | 104 |
organ system subdivision | 1.85e-07 | 223 |
immune system | 3.38e-07 | 93 |