FFCP PHASE1:Hg19::chr7:29234375..29234464,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:29234375..29234464,+ to FFCP PHASE1:Hg19::chr7:29234375..29234464,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1124 | |EntrezGene=1124 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1944 | |HGNC=1944 | ||
|TSSclassifier=strong | |||
|UniProt=B8ZZU1,B7Z1V0 | |UniProt=B8ZZU1,B7Z1V0 | ||
|association_with_transcript=-76bp_to_ENST00000409350,ENST00000495789_5end | |||
|cluster_id=chr7:29234375..29234464,+ | |||
|description=CAGE_peak_1_at_CHN2_5end | |||
|id=chr7:29234375..29234464,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.15e-23!42;CL:0000738!2.94e-20!140;CL:0000860!1.25e-19!45;CL:0002031!9.77e-19!124;CL:0000557!3.23e-18!71;CL:0000766!4.81e-18!76;CL:0000839!2.78e-17!70;CL:0002087!8.20e-16!119;CL:0000037!1.23e-15!172;CL:0000566!1.23e-15!172;CL:0002009!6.27e-15!65;CL:0002032!2.29e-14!165;CL:0000837!2.29e-14!165;CL:0002194!3.69e-14!63;CL:0000576!3.69e-14!63;CL:0000040!3.69e-14!63;CL:0000559!3.69e-14!63;CL:0000988!7.25e-13!182;CL:0000763!3.05e-12!112;CL:0000049!3.05e-12!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.41e-18;33!CL:0002057;1.41e-18;33!CL:0000576;8.43e-14;48!CL:0000473;2.50e-12;39!CL:0000234;2.50e-12;39!CL:0000766;1.35e-10;69!CL:0002087;5.98e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.58e-26,42;CL:0002057,8.58e-26,42;CL:0000738,3.35e-24,136;CL:0002031,4.80e-23,120;CL:0000557,5.80e-22,67;CL:0000766,7.87e-22,72;CL:0000473,3.97e-21,48;CL:0000234,3.97e-21,48;CL:0000839,7.42e-21,66;CL:0002087,1.04e-19,115;CL:0000037,9.04e-19,168;CL:0002009,4.13e-18,61;CL:0002032,1.37e-17,161;CL:0000837,1.37e-17,161;CL:0002194,3.24e-17,59;CL:0000576,3.24e-17,59;CL:0000040,3.24e-17,59;CL:0000559,3.24e-17,59;CL:0000988,1.04e-15,177;CL:0000763,2.25e-14,108;CL:0000049,2.25e-14,108;CL:0002393,8.11e-07,9;CL:0002397,8.11e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.14e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.23e-28!115;UBERON:0001049!1.02e-17!57;UBERON:0005068!1.02e-17!57;UBERON:0006241!1.02e-17!57;UBERON:0007135!1.02e-17!57;UBERON:0002390!2.29e-16!102;UBERON:0003061!2.29e-16!102;UBERON:0002193!4.34e-15!112;UBERON:0002405!1.17e-14!115;UBERON:0001474!1.35e-13!86;UBERON:0003080!2.90e-13!42;UBERON:0002371!3.06e-13!80;UBERON:0002616!4.17e-13!59;UBERON:0002780!4.86e-13!41;UBERON:0001890!4.86e-13!41;UBERON:0006240!4.86e-13!41;UBERON:0001017!1.20e-12!82;UBERON:0005743!9.66e-12!86;UBERON:0000073!1.19e-11!94;UBERON:0001016!1.19e-11!94;UBERON:0000955!3.20e-11!69;UBERON:0006238!3.20e-11!69;UBERON:0001893!4.36e-11!34;UBERON:0002020!4.44e-11!34;UBERON:0003528!4.44e-11!34;UBERON:0002791!1.01e-10!33;UBERON:0001869!4.94e-10!32;UBERON:0002346!2.57e-09!90;UBERON:0002619!3.74e-09!22;UBERON:0004765!1.02e-08!101;UBERON:0001434!1.02e-08!101;UBERON:0001950!1.76e-08!20;UBERON:0003075!4.72e-08!86;UBERON:0007284!4.72e-08!86;UBERON:0000956!4.07e-07!25;UBERON:0000203!4.07e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.12e-11;41!UBERON:0001890;9.12e-11;41!UBERON:0000073;1.58e-10;53!UBERON:0002616;1.58e-10;53!UBERON:0003528;1.81e-10;34!UBERON:0002020;1.81e-10;34!UBERON:0001893;2.18e-10;34!UBERON:0002791;3.35e-10;32!UBERON:0002619;4.33e-10;22!UBERON:0001869;5.22e-10;32!UBERON:0001950;2.51e-09;20!UBERON:0007023;2.04e-08;114!UBERON:0000956;7.45e-08;25!UBERON:0000203;7.45e-08;25!UBERON:0001017;9.67e-07;75 | |||
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|phase1_expression=14.7159487209151,6.63711624062048,25.2308383331788,11.0080628188443,4.91657203870017,12.2127393374052,0,0,0,0.245733936501509,0,6.55324116390517,1.31883489114227,0,0,0,0,0,0,0.369363174230364,0,0.313454721478088,0.286235987131057,0,0,2.13957536094264,1.72411237844886,2.2826126580967,36.976242023797,22.2621050896383,22.6031540041471,0,0,0,0,0,5.28480790802725,20.4978301156795,15.4419224552009,16.4928261744047,0.447830948479849,2.26725566213286,1.28787783817093,18.9017710413434,19.2716731281293,21.5899814457156,14.8754583619638,15.6243797448294,17.962969511916,38.8384729634903,34.3255346748995,41.3843902305024,20.3399951634605,22.5919639254339,41.9822108442459,21.2713843683143,19.1034305040492,24.4948598045142,24.1806274973013,41.7207735198922,33.2455305415501,38.2627508216591,51.0626963511378,58.8190155735118,12.1887880224005,13.6172453925874,9.9651559839292,32.4110778181199,46.9334626578181,31.4923824822419,11.502590550034,20.6235476153036,15.8231193720442,23.6605920669375,23.1738686961897,14.0471292490612,13.4794357375794,14.4169817127846,12.6973213490693,33.0614782739848,40.3800854714153,35.6195099841036,1.75996244461323,0.546138611262131,0,1.28019066769952,1.60158394814405,0,1.98313461835459,0,1.1384259382189,3.52342313622563,1.14681968437569,26.4342657158052,34.7515309048552,2.63384084775077,5.31116379307349,4.71612915298998,4.31763147898969,0,0,0,0,1.44833593950726,0.294605907474837,0.443067789167242,0,0.384273959177026,0.390178042679635,5.26201294731764,8.84320056914715,10.4329110864619,0.296573126324121,0,2.09071047609954,3.62589896632212,8.81407135284419,4.46715679127419,9.1087089127021,12.4240511586398,12.370585623272,15.207232711174,9.937957859133,12.2867146708242,8.74515085866421,8.28720382154059,13.9591759476578,35.4827868075529,32.3602636898044,20.1305921397091,0,0.670700859703636,0,0,0,0,0,0,0.378139268656271,0,0.175669571386252,4.97720486891308,0,0.741568885568859,6.49094787309367,5.22389211897802,5.45127638127347,1.66943437013739,2.28797964312051,0.74291500265913,0.79504962946682,0.860234595106124,0.347140501607594,1.69592382577203,1.67799774483962,0,0.417989933073621,2.32575083252396,2.84613010149368,1.00416183829401,0.805658634218294,0,1.22031028774085,1.10298924103761,0,2.58969212023831,4.26605807989723,1.68917220724983,1.53316637465883,0.949265659568129,1.83201743930407,6.58902087180316,3.87780264148325,0,0.496971951695318,0.12663051166458,0.264818361626438,1.14734648299525,1.41867352879343,3.36406560085384,0,0,0.622422070799533,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0.910161361938026,0,0.168336113954066,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,0.545492241181669,0.860413786167011,0.121973706129595,0.132529768321485,0.232387885739037,0.621966330092223,0.504641701751257,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0.723033089650446,0.55146986366197,0.217879444092406,0,0.404493924480493,0,0,5.90524363699719,1.40241773803446,0.4115740113314,0,38.0265104465493,27.5191620669735,14.7697476670351,2.20731549707325,11.929878538682,0,0.439001141634502,0,0.703702806881416,0.185176890317059,0,0,0,0.115930404975077,0,0.144366447761074,0,0.380508304469197,0,0,1.23108503043699,0,1.78357394746474,0,0,0,0.0895585227028483,0,0,120.702493284506,64.8916958677476,151.971508691386,213.297531057103,154.899465814168,0.952468414382536,1.90994212779139,0,3.4214489204541,0,0,0.285826432630578,0.336393253036082,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,3.01439377059586,6.97226766880235,7.29802835629016,0,0,0,0,0,0,0,0,0.179060963239896,13.3381321352297,30.3427370710968,28.8940950311753,26.6953515461877,2.54094624222463,18.219579540067,6.18631050222156,10.553524716064,7.01732626818479,1.49801404789436,0,1.24324654030811,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.3008339330937,18.3357070695824,19.9580533092441,6.66880657181771,1.66435439510497,5.14063498660456,8.93188108147597,17.9550508747033,5.89386198309454,23.1931860152819,16.3746319701345,4.50390979202101,17.8101679733989,0,0,0,0,0,11.7233666103874,0.40101294060657,0.0920809889358963,0,0,0,0.902399225814824,0.385076685522074,0,1.46139224653261,0.422206515571503,2.27466768141793,3.06168669497728,2.37507507712353,4.62681758070868,0,0,1.27438136522519,1.66215201785745,0.447749509444357,5.04297716285649,3.13722541229881,0.256450125116389,0.328014645699706,0,21.2264483994308,21.610393697129,27.9707204730793,0,0.650060246036521,1.6068392984416,0.096670718292122,0,0,0,0,0.145016693914229,0.0852266274161009,1.33548053470106,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01091240786658,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,20.5233485693379,0,0,0.443430153536676,0,5.07447609232169,10.7049208999933,11.9625909306574,9.52927101831156,5.34770955012053,5.83625980073446,8.64050299580984,5.55187623405989,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| ||
|short_description=p1@CHN2 | |||
}} | }} |
Latest revision as of 04:07, 18 September 2015
Short description: | p1@CHN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CHN2_5end |
Coexpression cluster: | NA |
Association with transcript: | -76bp_to_ENST00000409350, ENST00000495789_5end |
EntrezGene: | CHN2 |
HGNC: | 1944 |
UniProt: | B8ZZU1B7Z1V0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.58e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.58e-26 | 42 |
leukocyte | 3.35e-24 | 136 |
hematopoietic lineage restricted progenitor cell | 4.80e-23 | 120 |
granulocyte monocyte progenitor cell | 5.80e-22 | 67 |
myeloid leukocyte | 7.87e-22 | 72 |
defensive cell | 3.97e-21 | 48 |
phagocyte | 3.97e-21 | 48 |
myeloid lineage restricted progenitor cell | 7.42e-21 | 66 |
nongranular leukocyte | 1.04e-19 | 115 |
hematopoietic stem cell | 9.04e-19 | 168 |
macrophage dendritic cell progenitor | 4.13e-18 | 61 |
hematopoietic oligopotent progenitor cell | 1.37e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.37e-17 | 161 |
monopoietic cell | 3.24e-17 | 59 |
monocyte | 3.24e-17 | 59 |
monoblast | 3.24e-17 | 59 |
promonocyte | 3.24e-17 | 59 |
hematopoietic cell | 1.04e-15 | 177 |
myeloid cell | 2.25e-14 | 108 |
common myeloid progenitor | 2.25e-14 | 108 |
intermediate monocyte | 8.11e-07 | 9 |
CD14-positive, CD16-positive monocyte | 8.11e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.04e-29 | 114 |
hematopoietic system | 2.77e-20 | 98 |
blood island | 2.77e-20 | 98 |
neural tube | 5.00e-19 | 56 |
neural rod | 5.00e-19 | 56 |
future spinal cord | 5.00e-19 | 56 |
neural keel | 5.00e-19 | 56 |
hemolymphoid system | 4.48e-18 | 108 |
regional part of nervous system | 1.28e-17 | 53 |
regional part of brain | 1.28e-17 | 53 |
bone element | 2.53e-17 | 82 |
bone marrow | 5.41e-17 | 76 |
immune system | 8.17e-16 | 93 |
regional part of forebrain | 1.60e-14 | 41 |
forebrain | 1.60e-14 | 41 |
anterior neural tube | 1.60e-14 | 41 |
future forebrain | 1.60e-14 | 41 |
central nervous system | 5.82e-14 | 81 |
nervous system | 1.38e-13 | 89 |
skeletal element | 1.78e-13 | 90 |
brain | 2.45e-12 | 68 |
future brain | 2.45e-12 | 68 |
telencephalon | 2.51e-12 | 34 |
brain grey matter | 2.56e-12 | 34 |
gray matter | 2.56e-12 | 34 |
regional part of telencephalon | 2.68e-11 | 32 |
cerebral hemisphere | 3.86e-11 | 32 |
neurectoderm | 1.15e-10 | 86 |
skeletal system | 2.09e-10 | 100 |
regional part of cerebral cortex | 4.25e-10 | 22 |
neocortex | 2.43e-09 | 20 |
neural plate | 3.33e-09 | 82 |
presumptive neural plate | 3.33e-09 | 82 |
cerebral cortex | 7.34e-08 | 25 |
pallium | 7.34e-08 | 25 |