FF:11243-116E1: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004928 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004928 | ||
|accession_numbers=CAGE;DRX008231;DRR009103;DRZ000528;DRZ001913;DRZ011878;DRZ013263 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037110;DRR041476;DRZ007118 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618 | |||
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|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052,FF:0000247 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.39!242.81!ERG;;chr20:62680984..62680999,-!p1@SOX18!2.25!228.43!SOX18;;chr18:53068911..53068935,-!p4@TCF4!2.08!134.84!TCF4;;chr8:10588010..10588030,-!p1@SOX7!1.94!86.44!SOX7;;chr12:96588368..96588394,+!p3@ELK3!1.88!191.64!ELK3;;chr3:169381420..169381535,-!p1@MECOM!1.65!50.72!MECOM;;chr17:6926362..6926377,+!p1@BCL6B!1.62!41.17!BCL6B;;chr8:55370487..55370503,+!p1@SOX17!1.51!31.61!SOX17;;chr7:27205106..27205134,-!p2@HOXA9!1.43!25.99!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!1.43!25.72!HOXA9;;chr18:22932080..22932170,-!p1@ZNF521!1.40!99.21!ZNF521;;chr17:46682321..46682362,-!p1@HOXB6!1.36!22.06!HOXB6;;chr6:34204921..34204939,+!p3@HMGA1!1.33!595.72!HMGA1;;chr18:53068982..53068993,-!p20@TCF4!1.24!16.52!TCF4;;chr10:94449703..94449718,+!p1@HHEX!1.23!60.63!HHEX;;chr7:15726243..15726293,-!p2@MEOX2!1.22!15.45!MEOX2;;chr17:46688334..46688385,-!p1@HOXB7!1.21!21.79!HOXB7;;chr17:46655672..46655697,-!p3@HOXB4!1.20!14.91!HOXB4;;chr19:46801639..46801699,+!p1@HIF3A!1.20!14.91!HIF3A;;chr9:16705069..16705086,-!p3@BNC2!1.20!14.73!BNC2;;chr13:72441315..72441454,-!p1@DACH1!1.19!29.20!DACH1;;chr5:71803177..71803255,-!p1@ZNF366!1.16!13.31!ZNF366;;chr7:115670804..115670825,-!p1@TFEC!1.15!13.04!TFEC;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.95!HOXA3;;chr19:53496768..53496799,-!p1@ZNF702P!1.12!18.93!ZNF702P;;chr3:168864315..168864339,-!p2@MECOM!1.11!19.74!MECOM;;chr5:88178983..88179012,-!p1@MEF2C!1.10!89.66!MEF2C;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.24!HMGA2;;chr7:15726296..15726315,-!p1@MEOX2!1.10!11.52!MEOX2;;chr6:28321971..28321995,-!p1@ZNF323!1.08!10.98!ZNF323;;chr12:66218255..66218304,+!p3@HMGA2!1.06!28.40!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.45!KDM5D;;chr19:13213511..13213545,-!p2@LYL1!1.04!10.81!LYL1;;chr19:13213399..13213414,-!p6@LYL1!1.01!9.20!LYL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.22!ZFPM2;;chr1:200008734..200008765,+!p2@NR5A2!0.99!8.75!NR5A2;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.75!HOXD8;;chr2:177053386..177053402,+!p1@HOXD1!0.99!8.66!HOXD1;;chr9:14314131..14314147,-!p2@NFIB!0.98!49.11!NFIB;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.14!HMGA2;;chr10:31288398..31288455,-!p2@ZNF438!0.96!9.64!ZNF438;;chr11:128563948..128564003,+!p1@FLI1!0.95!98.77!FLI1;;chr18:53068940..53068951,-!p21@TCF4!0.95!7.95!TCF4;;chr18:53177984..53178004,-!p17@TCF4!0.95!7.95!TCF4;;chr18:53068893..53068902,-!p28@TCF4!0.93!7.50!TCF4;;chr11:128563652..128563689,+!p3@FLI1!0.93!7.50!FLI1;;chr4:146402843..146402864,+!p3@SMAD1!0.92!15.00!SMAD1;;chr9:124991204..124991246,-!p1@LHX6!0.92!7.23!LHX6;;chr7:27183291..27183324,-!p1@HOXA5!0.92!7.23!HOXA5;;chr10:31288370..31288393,-!p3@ZNF438!0.92!7.23!ZNF438;;chr16:86600426..86600441,+!p1@FOXC2!0.91!18.13!FOXC2;;chr13:72441074..72441172,-!p2@DACH1!0.90!6.97!DACH1;;chr6:34204672..34204692,+!p1@HMGA1!0.89!796.91!HMGA1;;chr17:46655704..46655718,-!p2@HOXB4!0.89!10.36!HOXB4;;chr1:158979686..158979745,+!p1@IFI16!0.88!226.64!IFI16;;chr3:168865194..168865245,-!p3@MECOM!0.88!8.57!MECOM;;chr9:14314566..14314618,-!p1@NFIB!0.86!78.94!NFIB;;chr15:96873984..96873999,+!p3@NR2F2!0.85!47.51!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!0.84!39.47!GATA2;;chr20:50159198..50159299,-!p1@NFATC2!0.84!8.84!NFATC2;;chr4:146403912..146403972,+!p5@SMAD1!0.84!7.77!SMAD1;;chr2:177001290..177001315,+!p1@HOXD3!0.84!5.89!HOXD3;;chr1:47695003..47695042,-!p2@TAL1!0.83!5.80!TAL1;;chr3:25469815..25469866,+!p3@RARB!0.83!5.72!RARB;;chr18:53257001..53257015,-!p5@TCF4!0.82!9.91!TCF4;;chr18:22932004..22932021,-!p2@ZNF521!0.82!5.63!ZNF521;;chr8:93107451..93107468,-!p2@RUNX1T1!0.82!5.54!RUNX1T1;;chr9:14083467..14083483,-!p4@NFIB!0.81!14.20!NFIB;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.45!HOXB8;;chr19:46800289..46800327,+!p2@HIF3A!0.81!5.45!HIF3A;;chr15:96873921..96873946,+!p1@NR2F2!0.80!163.78!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.79!25.81!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.18!ZFY;;chr1:200011711..200011752,+!p3@NR5A2!0.78!5.00!NR5A2;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.91!TBX1;;chr12:66218836..66218888,+!p1@HMGA2!0.76!49.03!HMGA2;;chr1:205601064..205601087,-!p4@ELK4!0.76!9.73!ELK4;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.88!HOXB7;;chr7:27196217..27196246,-!p2@HOXA7!0.75!4.64!HOXA7;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.64!HOXA7;;chr1:158979792..158979814,+!p2@IFI16!0.74!47.78!IFI16;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.91!HMGA2;;chr12:80084018..80084035,-!p17@PAWR!0.74!4.55!PAWR;;chr10:94449675..94449694,+!p2@HHEX!0.73!12.77!HHEX;;chr4:299227..299272,-!p1@ZNF732!0.73!4.38!ZNF732;;chr17:47892398..47892407,+!p2@KAT7!0.73!4.38!KAT7;;chr5:88179017..88179046,-!p2@MEF2C!0.72!19.02!MEF2C;;chr9:14314106..14314119,-!p5@NFIB!0.72!8.13!NFIB;;chr20:50721803..50721857,-!p2@ZFP64!0.72!6.97!ZFP64;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.29!HOXA10;;chr7:15726220..15726236,-!p4@MEOX2!0.72!4.20!MEOX2;;chr7:27183263..27183284,-!p2@HOXA5!0.72!4.20!HOXA5;;chr13:72441506..72441562,-!p3@DACH1!0.72!4.20!DACH1;;chr10:8096631..8096660,+!p1@GATA3!0.71!5.09!GATA3;;chr2:46524537..46524553,+!p1@EPAS1!0.70!448.91!EPAS1;;chr15:96874012..96874042,+!p2@NR2F2!0.70!41.26!NR2F2;;chr6:130339710..130339745,+!p1@L3MBTL3!0.70!35.72!L3MBTL3;;chr9:14082760..14082775,-!p6@NFIB!0.70!7.05!NFIB;;chr19:53496806..53496848,-!p2@ZNF702P!0.70!6.34!ZNF702P;;chr6:85473156..85473210,-!p2@TBX18!0.70!5.00!TBX18;;chr1:47697539..47697573,-!p3@TAL1!0.70!4.02!TAL1;;chr9:14314522..14314556,-!p3@NFIB!0.69!10.00!NFIB;;chr4:57522166..57522260,-!p2@HOPX!0.69!4.55!HOPX;;chr5:88179195..88179224,-!p3@MEF2C!0.68!6.34!MEF2C;;chr7:27224842..27224872,-!p1@HOXA11!0.68!3.84!HOXA11;;chr11:128562372..128562397,+!p4@FLI1!0.68!3.84!FLI1;;chr3:25470156..25470227,+!p2@RARB!0.68!3.75!RARB;;chr13:41240737..41240787,-!p1@FOXO1!0.67!50.19!FOXO1;;chr18:53255415..53255491,-!p1@TCF4!0.67!36.26!TCF4;;chr18:53257027..53257052,-!p3@TCF4!0.67!16.70!TCF4;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.89!ETV4;;chrX:66763856..66763896,+!p1@AR!0.67!5.54!AR;;chr3:169381183..169381205,-!p4@MECOM!0.67!3.66!MECOM;;chr4:146402795..146402816,+!p7@SMAD1!0.66!5.09!SMAD1;;chr14:74256787..74256858,-!p6@C14orf43!0.66!3.57!C14orf43;;chr18:19749541..19749557,+!p1@GATA6!0.65!12.41!GATA6;;chr5:124082322..124082364,-!p1@ZNF608!0.65!9.82!ZNF608;;chr17:41277372..41277418,-!p1@BRCA1!0.64!14.02!BRCA1;;chr9:14313893..14313908,-!p7@NFIB!0.64!5.18!NFIB;;chr2:25475120..25475176,-!p2@DNMT3A!0.64!4.82!DNMT3A;;chr6:28321909..28321965,-!p3@ZNF323!0.64!3.39!ZNF323;;chr8:93115584..93115642,-!p5@RUNX1T1!0.64!3.39!RUNX1T1;;chr11:19262421..19262455,-!p3@E2F8!0.64!3.39!E2F8;;chr1:158979680..158979683,+!p9@IFI16!0.63!4.73!IFI16;;chr1:221052733..221052749,+!p2@HLX!0.63!4.46!HLX;;chr5:92918919..92918942,+!p1@NR2F1!0.62!16.70!NR2F1;;chr18:52989031..52989079,-!p2@TCF4!0.62!8.39!TCF4;;chr1:214161272..214161322,+!p1@PROX1!0.62!4.73!PROX1;;chr7:139741594..139741615,-!p5@PARP12!0.62!3.21!PARP12;;chr17:6926381..6926392,+!p2@BCL6B!0.62!3.21!BCL6B;;chr18:22931979..22931992,-!p3@ZNF521!0.62!3.21!ZNF521;;chr3:168864383..168864400,-!p7@MECOM!0.62!3.13!MECOM;;chr6:126112074..126112144,+!p1@NCOA7!0.61!49.11!NCOA7;;chr20:42295713..42295738,+!p2@MYBL2!0.61!21.61!MYBL2;;chr7:26191809..26191890,+!p1@NFE2L3!0.61!17.95!NFE2L3;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.61!16.43!TAL1;;chr19:58341656..58341694,+!p5@ZNF587!0.61!3.84!ZNF587;;chr7:27170359..27170381,-!p1@HOXA4!0.61!3.04!HOXA4;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.29!FOXO1;;chrX:66763815..66763854,+!p2@AR!0.60!4.11!AR;;chr12:2986275..2986363,-!p1@FOXM1!0.59!35.09!FOXM1;;chr19:49865646..49865718,-!p1@TEAD2!0.59!30.27!TEAD2;;chr3:178789522..178789564,-!p2@ZMAT3!0.59!25.63!ZMAT3;;chr17:41623692..41623715,-!p1@ETV4!0.59!14.65!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.59!3.57!GATA3;;chr13:72440901..72440968,-!p4@DACH1!0.59!2.86!DACH1;;chr4:146404119..146404158,+!p9@SMAD1!0.59!2.86!SMAD1;;chr12:2986206..2986258,-!p2@FOXM1!0.58!20.36!FOXM1;;chr15:96874145..96874166,+!p7@NR2F2!0.58!5.98!NR2F2;;chr3:33482052..33482116,-!p2@UBP1!0.58!4.73!UBP1;;chr18:52989565..52989623,-!p9@TCF4!0.58!3.75!TCF4;;chr13:79177703..79177729,-!p2@POU4F1!0.58!2.77!POU4F1;;chr4:146402827..146402839,+!p10@SMAD1!0.58!2.77!SMAD1;;chr15:96873861..96873872,+!p9@NR2F2!0.57!6.34!NR2F2;;chr3:25469724..25469773,+!p1@RARB!0.57!4.20!RARB;;chr5:124082580..124082603,-!p4@ZNF608!0.57!3.21!ZNF608;;chr5:88180342..88180365,-!p10@MEF2C!0.57!2.68!MEF2C;;chr11:19262461..19262476,-!p5@E2F8!0.57!2.68!E2F8;;chr14:55493763..55493824,-!p1@WDHD1!0.56!24.47!WDHD1;;chr10:45496320..45496336,+!p3@ZNF22!0.56!2.59!ZNF22;;chr12:85673977..85674015,+!p1@ALX1!0.56!2.59!ALX1;;chr7:27142290..27142310,-!p1@HOXA2!0.56!2.59!HOXA2;;chr15:50647274..50647336,-!p1@GABPB1!0.55!22.06!GABPB1;;chr15:57210961..57211012,+!p3@TCF12!0.55!9.73!TCF12;;chr12:80084167..80084197,-!p5@PAWR!0.55!7.05!PAWR;;chr12:66218378..66218401,+!p6@HMGA2!0.55!4.38!HMGA2;;chr10:31608127..31608156,+!p1@ZEB1!0.54!58.67!ZEB1;;chr6:31126291..31126399,+!p1@TCF19!0.54!29.38!TCF19;;chr5:176738887..176738934,-!p1@MXD3!0.54!20.63!MXD3;;chr3:114343826..114343869,-!p4@ZBTB20!0.54!5.72!ZBTB20;;chr3:168865250..168865272,-!p5@MECOM!0.54!2.50!MECOM;;chr7:27183325..27183338,-!p5@HOXA5!0.54!2.50!HOXA5;;chr19:13213555..13213568,-!p5@LYL1!0.54!2.50!LYL1;;chr12:96588279..96588299,+!p4@ELK3!0.53!14.11!ELK3;;chr1:23696308..23696339,-!p2@ZNF436!0.53!5.89!ZNF436;;chr1:158985493..158985535,+!p4@IFI16!0.53!4.02!IFI16;;chr3:71355163..71355209,-!p5@FOXP1!0.53!3.57!FOXP1;;chr3:25470062..25470084,+!p4@RARB!0.53!2.41!RARB;;chr4:57522598..57522664,-!p3@HOPX!0.53!2.41!HOPX;;chr17:46691732..46691766,-!p4@HOXB8!0.53!2.41!HOXB8;;chr10:94451574..94451587,+!p6@HHEX!0.53!2.41!HHEX;;chr4:87857433..87857472,+!p9@AFF1!0.52!4.73!AFF1;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.78!MYBL2;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.63!ELK3;;chr9:116638565..116638606,+!p1@ZNF618!0.51!11.88!ZNF618;;chr1:205601000..205601055,-!p2@ELK4!0.51!11.61!ELK4;;chr10:35484804..35484902,+!p2@CREM!0.51!10.63!CREM;;chr15:90544532..90544563,+!p1@ZNF710!0.51!5.27!ZNF710;;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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002543;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002618;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 43: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor1.CNhs10872.11243-116E1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11243-116E1 | |||
|is_a=EFO:0002091;;FF:0000247 | |||
|is_obsolete= | |||
|library_id=CNhs10872 | |||
|library_id_phase_based=2:CNhs10872 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11243 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.TGACCA.11243 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11243 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.TGACCA.11243 | |||
|name=Endothelial Cells - Umbilical vein, donor1 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs10872,LSID703,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10008,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |||
|rna_catalog_number=SC8005 | |||
|rna_concentration=0.616 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=4242 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=E1 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=1.16E+03 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10008.TGACCA | |||
|sample_age=fetal | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=blood vessel endothelial cell | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Sciencell/3H | |||
|sample_description= | |||
|sample_dev_stage=fetus | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=unknown | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.9870410346265e-269!GO:0043226;organelle;1.64989166407417e-214!GO:0043229;intracellular organelle;3.44387600019191e-214!GO:0043231;intracellular membrane-bound organelle;3.16092405546206e-208!GO:0043227;membrane-bound organelle;7.121533192224e-208!GO:0005737;cytoplasm;2.86102160381791e-190!GO:0044422;organelle part;1.91246940597739e-155!GO:0044446;intracellular organelle part;5.17463427155649e-154!GO:0044444;cytoplasmic part;5.41637645715046e-129!GO:0032991;macromolecular complex;3.24757105739631e-103!GO:0044238;primary metabolic process;6.06104378569326e-97!GO:0044237;cellular metabolic process;7.16577355713181e-96!GO:0005634;nucleus;2.27878152227901e-94!GO:0043170;macromolecule metabolic process;2.88941002981165e-91!GO:0030529;ribonucleoprotein complex;6.50091524017702e-86!GO:0044428;nuclear part;6.94664160812824e-82!GO:0005515;protein binding;1.46773271580597e-80!GO:0003723;RNA binding;1.74094260921444e-77!GO:0043233;organelle lumen;6.49547082804969e-76!GO:0031974;membrane-enclosed lumen;6.49547082804969e-76!GO:0005739;mitochondrion;5.14312111657098e-65!GO:0016043;cellular component organization and biogenesis;3.73192173679326e-55!GO:0019538;protein metabolic process;4.94670653026511e-54!GO:0043283;biopolymer metabolic process;5.55744358710069e-54!GO:0043234;protein complex;3.79378934587814e-53!GO:0006396;RNA processing;8.34926489095507e-51!GO:0005840;ribosome;2.03091960304659e-49!GO:0031090;organelle membrane;7.70235374217482e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.23227271010195e-47!GO:0031981;nuclear lumen;1.99823144727188e-47!GO:0044267;cellular protein metabolic process;5.99482650644357e-47!GO:0006412;translation;7.91194494040977e-47!GO:0044260;cellular macromolecule metabolic process;1.11207072979549e-46!GO:0033036;macromolecule localization;3.24875879703401e-46!GO:0015031;protein transport;1.6287030375655e-45!GO:0031967;organelle envelope;1.91503500791827e-44!GO:0043228;non-membrane-bound organelle;2.47567966991083e-44!GO:0043232;intracellular non-membrane-bound organelle;2.47567966991083e-44!GO:0031975;envelope;4.96966837115528e-44!GO:0010467;gene expression;1.72141109636371e-43!GO:0044429;mitochondrial part;2.697108662517e-43!GO:0003735;structural constituent of ribosome;4.94392508252274e-43!GO:0008104;protein localization;4.52318368041433e-42!GO:0045184;establishment of protein localization;5.22244981164511e-42!GO:0006996;organelle organization and biogenesis;2.5924776798768e-41!GO:0016071;mRNA metabolic process;6.70089335982359e-41!GO:0005829;cytosol;1.05154286280798e-40!GO:0008380;RNA splicing;5.71472927904124e-39!GO:0046907;intracellular transport;4.82005469406991e-38!GO:0065003;macromolecular complex assembly;5.09923873519884e-38!GO:0033279;ribosomal subunit;7.52593715529901e-38!GO:0006259;DNA metabolic process;2.94662220558907e-37!GO:0009058;biosynthetic process;8.13946449711495e-37!GO:0000166;nucleotide binding;6.19925232341006e-36!GO:0044249;cellular biosynthetic process;9.81807060326939e-36!GO:0006397;mRNA processing;1.07424318524522e-35!GO:0022607;cellular component assembly;5.12953088834729e-34!GO:0009059;macromolecule biosynthetic process;5.61150908248663e-34!GO:0007049;cell cycle;1.20605434965769e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.28688050772054e-31!GO:0006886;intracellular protein transport;2.11577491168802e-31!GO:0005654;nucleoplasm;3.62297013553275e-30!GO:0005740;mitochondrial envelope;1.89259054861164e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.96265663121585e-28!GO:0005681;spliceosome;3.51368375999134e-28!GO:0003676;nucleic acid binding;3.01604958563766e-27!GO:0051649;establishment of cellular localization;6.61452694512465e-27!GO:0051641;cellular localization;1.31000004399768e-26!GO:0031966;mitochondrial membrane;1.42556415167225e-26!GO:0032553;ribonucleotide binding;2.7961679848832e-26!GO:0032555;purine ribonucleotide binding;2.7961679848832e-26!GO:0017076;purine nucleotide binding;7.185878063838e-26!GO:0019866;organelle inner membrane;9.86864975768777e-26!GO:0016462;pyrophosphatase activity;3.78106649834886e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.50862573595572e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;6.95736589601941e-25!GO:0017111;nucleoside-triphosphatase activity;1.56410218048069e-24!GO:0044451;nucleoplasm part;7.30681311642133e-24!GO:0022402;cell cycle process;1.46507939492234e-23!GO:0005743;mitochondrial inner membrane;1.76812420093746e-23!GO:0000278;mitotic cell cycle;1.7729405894008e-23!GO:0044445;cytosolic part;6.5588188830855e-23!GO:0006974;response to DNA damage stimulus;3.00531240349592e-22!GO:0005694;chromosome;2.1979325621859e-21!GO:0012505;endomembrane system;2.44386031663547e-21!GO:0005524;ATP binding;1.47541621300139e-20!GO:0032559;adenyl ribonucleotide binding;1.70149744088175e-20!GO:0006119;oxidative phosphorylation;1.95621617460531e-20!GO:0015935;small ribosomal subunit;2.49285458039887e-20!GO:0016874;ligase activity;5.20526172923529e-20!GO:0030554;adenyl nucleotide binding;5.57601846509534e-20!GO:0022618;protein-RNA complex assembly;1.21168333225502e-19!GO:0044427;chromosomal part;1.37538504108428e-19!GO:0006512;ubiquitin cycle;3.04171030463574e-19!GO:0006457;protein folding;3.04920042016881e-19!GO:0016070;RNA metabolic process;3.78765496836704e-19!GO:0051301;cell division;3.81558053723374e-19!GO:0000087;M phase of mitotic cell cycle;1.43202624436728e-18!GO:0015934;large ribosomal subunit;1.51456854863836e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.18094497059217e-18!GO:0044265;cellular macromolecule catabolic process;2.33222070163395e-18!GO:0031980;mitochondrial lumen;3.0294737543473e-18!GO:0005759;mitochondrial matrix;3.0294737543473e-18!GO:0019941;modification-dependent protein catabolic process;3.18111311455647e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.18111311455647e-18!GO:0007067;mitosis;3.21193998202187e-18!GO:0006511;ubiquitin-dependent protein catabolic process;3.77716502981612e-18!GO:0044455;mitochondrial membrane part;3.98328596449834e-18!GO:0005730;nucleolus;5.21261251414583e-18!GO:0006281;DNA repair;6.03853164918271e-18!GO:0044257;cellular protein catabolic process;7.40556210124004e-18!GO:0022403;cell cycle phase;7.5080051120361e-18!GO:0051276;chromosome organization and biogenesis;1.25269484135423e-17!GO:0043412;biopolymer modification;6.40269216443661e-17!GO:0005635;nuclear envelope;1.11594592711001e-16!GO:0005783;endoplasmic reticulum;1.36656016521501e-16!GO:0043285;biopolymer catabolic process;1.36674866779254e-16!GO:0016192;vesicle-mediated transport;2.25633899393706e-16!GO:0008134;transcription factor binding;2.72210741337601e-16!GO:0009719;response to endogenous stimulus;3.25168820043752e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.93527093885898e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.42689132292571e-16!GO:0006605;protein targeting;7.21605844181125e-16!GO:0009057;macromolecule catabolic process;1.00675103494899e-15!GO:0048770;pigment granule;1.03165709083608e-15!GO:0042470;melanosome;1.03165709083608e-15!GO:0008135;translation factor activity, nucleic acid binding;1.03165709083608e-15!GO:0005746;mitochondrial respiratory chain;1.59880908750348e-15!GO:0031965;nuclear membrane;1.90441797675931e-15!GO:0030163;protein catabolic process;2.87770459386225e-15!GO:0000279;M phase;3.39118721163494e-15!GO:0005794;Golgi apparatus;3.79015828914219e-15!GO:0051186;cofactor metabolic process;3.84558184513261e-15!GO:0006464;protein modification process;4.67646839548517e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.04375416797098e-15!GO:0006260;DNA replication;7.72789124665226e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;8.6608744987075e-15!GO:0000375;RNA splicing, via transesterification reactions;8.6608744987075e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.6608744987075e-15!GO:0044453;nuclear membrane part;1.0157707252098e-14!GO:0044248;cellular catabolic process;2.57672060594861e-14!GO:0048193;Golgi vesicle transport;3.43697977867332e-14!GO:0044432;endoplasmic reticulum part;5.47195211760708e-14!GO:0050136;NADH dehydrogenase (quinone) activity;9.52764609094023e-14!GO:0003954;NADH dehydrogenase activity;9.52764609094023e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.52764609094023e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.04704431851182e-13!GO:0005761;mitochondrial ribosome;1.19119386050739e-13!GO:0000313;organellar ribosome;1.19119386050739e-13!GO:0016887;ATPase activity;1.39545073095737e-13!GO:0016604;nuclear body;1.44296103760915e-13!GO:0043687;post-translational protein modification;1.88848537659408e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.62864710764216e-13!GO:0042623;ATPase activity, coupled;3.90349211212846e-13!GO:0004386;helicase activity;4.08383753367272e-13!GO:0006323;DNA packaging;4.09383243284997e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.36079326214124e-13!GO:0042254;ribosome biogenesis and assembly;7.25338215903924e-13!GO:0003743;translation initiation factor activity;1.06277478847382e-12!GO:0051082;unfolded protein binding;1.25673136102688e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.65722025288317e-12!GO:0042773;ATP synthesis coupled electron transport;2.65722025288317e-12!GO:0006413;translational initiation;3.28232644112242e-12!GO:0005643;nuclear pore;6.25883255973473e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.10481713437293e-12!GO:0045271;respiratory chain complex I;7.10481713437293e-12!GO:0005747;mitochondrial respiratory chain complex I;7.10481713437293e-12!GO:0006461;protein complex assembly;7.51840614941284e-12!GO:0051726;regulation of cell cycle;8.49996846031987e-12!GO:0006732;coenzyme metabolic process;1.17461914396358e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.31989853759954e-11!GO:0000074;regulation of progression through cell cycle;1.39136260970119e-11!GO:0015630;microtubule cytoskeleton;1.60366048808519e-11!GO:0008639;small protein conjugating enzyme activity;2.56776300879557e-11!GO:0009259;ribonucleotide metabolic process;3.84972985113672e-11!GO:0006913;nucleocytoplasmic transport;3.87956308988453e-11!GO:0006163;purine nucleotide metabolic process;4.24025535783272e-11!GO:0004842;ubiquitin-protein ligase activity;4.74227400807468e-11!GO:0006333;chromatin assembly or disassembly;6.13575914715712e-11!GO:0003712;transcription cofactor activity;6.50752535098085e-11!GO:0050657;nucleic acid transport;7.60045953850788e-11!GO:0051236;establishment of RNA localization;7.60045953850788e-11!GO:0050658;RNA transport;7.60045953850788e-11!GO:0006403;RNA localization;7.90668974120698e-11!GO:0050794;regulation of cellular process;7.90668974120698e-11!GO:0016607;nuclear speck;8.54361594075775e-11!GO:0000785;chromatin;8.9507237721263e-11!GO:0051169;nuclear transport;1.09540279689541e-10!GO:0006446;regulation of translational initiation;1.18645724860308e-10!GO:0008026;ATP-dependent helicase activity;1.18645724860308e-10!GO:0019787;small conjugating protein ligase activity;1.49494432411042e-10!GO:0008565;protein transporter activity;2.72922475299264e-10!GO:0009150;purine ribonucleotide metabolic process;2.85728299202186e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.93216731109123e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.43597481647501e-10!GO:0065002;intracellular protein transport across a membrane;3.60159283488521e-10!GO:0046930;pore complex;3.64013937616347e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.82883231536524e-10!GO:0005793;ER-Golgi intermediate compartment;5.20556142526164e-10!GO:0065004;protein-DNA complex assembly;5.69529311861391e-10!GO:0006164;purine nucleotide biosynthetic process;6.492211229699e-10!GO:0012501;programmed cell death;8.86014381830433e-10!GO:0005789;endoplasmic reticulum membrane;1.10611853224606e-09!GO:0006915;apoptosis;1.19554870923462e-09!GO:0009055;electron carrier activity;1.23098109519403e-09!GO:0009260;ribonucleotide biosynthetic process;1.63838058936454e-09!GO:0016881;acid-amino acid ligase activity;2.25739717481601e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.85571582708827e-09!GO:0009141;nucleoside triphosphate metabolic process;4.15505713212481e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.22482478736474e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.42173688401378e-09!GO:0051028;mRNA transport;5.15355106417068e-09!GO:0005525;GTP binding;5.43519599817346e-09!GO:0006399;tRNA metabolic process;5.64988060234105e-09!GO:0009060;aerobic respiration;5.65448064166144e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.19125114722311e-09!GO:0000775;chromosome, pericentric region;6.84983225900841e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.61586123735144e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.61586123735144e-09!GO:0003924;GTPase activity;1.13244179137706e-08!GO:0008219;cell death;1.56526967426622e-08!GO:0016265;death;1.56526967426622e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.60844385532674e-08!GO:0009056;catabolic process;1.99415772095148e-08!GO:0005813;centrosome;2.01718319552018e-08!GO:0009117;nucleotide metabolic process;2.03220558448059e-08!GO:0005819;spindle;2.09925950682676e-08!GO:0006364;rRNA processing;2.19161713605039e-08!GO:0045333;cellular respiration;2.25392952160238e-08!GO:0003697;single-stranded DNA binding;2.30699137398982e-08!GO:0006793;phosphorus metabolic process;2.73641559765052e-08!GO:0006796;phosphate metabolic process;2.73641559765052e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.00946606764804e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.30691092046193e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.30691092046193e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.30691092046193e-08!GO:0017038;protein import;4.05641499486102e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.50459245773965e-08!GO:0006334;nucleosome assembly;4.82971044097963e-08!GO:0016072;rRNA metabolic process;5.71129205909282e-08!GO:0043038;amino acid activation;5.9130268091707e-08!GO:0006418;tRNA aminoacylation for protein translation;5.9130268091707e-08!GO:0043039;tRNA aminoacylation;5.9130268091707e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.90705504605766e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.90705504605766e-08!GO:0005815;microtubule organizing center;6.91794529014896e-08!GO:0016740;transferase activity;7.37692870030655e-08!GO:0016310;phosphorylation;8.64206217848146e-08!GO:0032446;protein modification by small protein conjugation;8.8870859654575e-08!GO:0051188;cofactor biosynthetic process;9.506210022126e-08!GO:0032561;guanyl ribonucleotide binding;9.506210022126e-08!GO:0019001;guanyl nucleotide binding;9.506210022126e-08!GO:0046034;ATP metabolic process;1.18040922033422e-07!GO:0006366;transcription from RNA polymerase II promoter;1.21863015342577e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.23217755827226e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.24364917288282e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.24364917288282e-07!GO:0043566;structure-specific DNA binding;1.32672565270631e-07!GO:0015986;ATP synthesis coupled proton transport;1.34239482628709e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.34239482628709e-07!GO:0006099;tricarboxylic acid cycle;1.58473493580711e-07!GO:0046356;acetyl-CoA catabolic process;1.58473493580711e-07!GO:0016567;protein ubiquitination;1.66381496305768e-07!GO:0031497;chromatin assembly;1.6891479985616e-07!GO:0031988;membrane-bound vesicle;1.94652423173876e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.07422499943908e-07!GO:0019829;cation-transporting ATPase activity;2.35782277082564e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.62343982007282e-07!GO:0016568;chromatin modification;3.25640099709583e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.56835228823022e-07!GO:0048523;negative regulation of cellular process;3.62769104828528e-07!GO:0007010;cytoskeleton organization and biogenesis;3.6681587921696e-07!GO:0000245;spliceosome assembly;3.93171513253654e-07!GO:0019899;enzyme binding;4.05494554009008e-07!GO:0016779;nucleotidyltransferase activity;4.54334243301066e-07!GO:0006084;acetyl-CoA metabolic process;5.20420398009448e-07!GO:0050789;regulation of biological process;5.6473020621222e-07!GO:0048475;coated membrane;6.05928112758285e-07!GO:0030117;membrane coat;6.05928112758285e-07!GO:0007051;spindle organization and biogenesis;6.65886754993182e-07!GO:0000151;ubiquitin ligase complex;6.69189845526644e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.81757420708018e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.84014485735897e-07!GO:0030120;vesicle coat;9.45025663101394e-07!GO:0030662;coated vesicle membrane;9.45025663101394e-07!GO:0016787;hydrolase activity;1.27571448844046e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.33239620971126e-06!GO:0031982;vesicle;1.37635890705271e-06!GO:0051246;regulation of protein metabolic process;1.37655828624262e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.40997279200224e-06!GO:0031252;leading edge;1.42255360262399e-06!GO:0051329;interphase of mitotic cell cycle;1.45083824133811e-06!GO:0051187;cofactor catabolic process;1.4839387207632e-06!GO:0031410;cytoplasmic vesicle;1.5911827396608e-06!GO:0003724;RNA helicase activity;1.69802502891383e-06!GO:0005788;endoplasmic reticulum lumen;1.72448207348892e-06!GO:0006754;ATP biosynthetic process;1.83980975953264e-06!GO:0006753;nucleoside phosphate metabolic process;1.83980975953264e-06!GO:0006261;DNA-dependent DNA replication;2.12239248974624e-06!GO:0009109;coenzyme catabolic process;2.21895685477085e-06!GO:0009108;coenzyme biosynthetic process;2.61320545014379e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.71134539978982e-06!GO:0051170;nuclear import;2.77180673872598e-06!GO:0051325;interphase;3.02999569264133e-06!GO:0007005;mitochondrion organization and biogenesis;3.21267803838855e-06!GO:0005667;transcription factor complex;4.07573248121574e-06!GO:0045259;proton-transporting ATP synthase complex;4.1244486356199e-06!GO:0005768;endosome;4.81103512975468e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.81103512975468e-06!GO:0000075;cell cycle checkpoint;5.77489184257292e-06!GO:0006613;cotranslational protein targeting to membrane;5.80543704131939e-06!GO:0044431;Golgi apparatus part;6.13848814764666e-06!GO:0003713;transcription coactivator activity;6.21246583085992e-06!GO:0043623;cellular protein complex assembly;6.49458060695156e-06!GO:0004298;threonine endopeptidase activity;6.96226222719828e-06!GO:0030029;actin filament-based process;7.2818521039626e-06!GO:0016469;proton-transporting two-sector ATPase complex;8.03572234365817e-06!GO:0006606;protein import into nucleus;8.27352064298184e-06!GO:0045786;negative regulation of progression through cell cycle;8.66154580250314e-06!GO:0042981;regulation of apoptosis;1.06610958841059e-05!GO:0006752;group transfer coenzyme metabolic process;1.1165427532885e-05!GO:0048519;negative regulation of biological process;1.1534616428096e-05!GO:0043067;regulation of programmed cell death;1.23293720631202e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.23772638831097e-05!GO:0006916;anti-apoptosis;1.30550619974413e-05!GO:0008094;DNA-dependent ATPase activity;1.35367398438639e-05!GO:0007264;small GTPase mediated signal transduction;1.48657010358099e-05!GO:0005769;early endosome;1.49788342788243e-05!GO:0008047;enzyme activator activity;1.67909544580377e-05!GO:0016853;isomerase activity;1.78311836580571e-05!GO:0016859;cis-trans isomerase activity;2.16064731820771e-05!GO:0043069;negative regulation of programmed cell death;2.47971329321255e-05!GO:0000776;kinetochore;2.48996901083452e-05!GO:0051427;hormone receptor binding;2.79906994519944e-05!GO:0031968;organelle outer membrane;3.04247388455993e-05!GO:0019222;regulation of metabolic process;3.29248124149993e-05!GO:0043066;negative regulation of apoptosis;3.52921731031604e-05!GO:0005657;replication fork;3.69015995322312e-05!GO:0007059;chromosome segregation;3.76851120669251e-05!GO:0016563;transcription activator activity;3.92245961473764e-05!GO:0008092;cytoskeletal protein binding;4.09395803811304e-05!GO:0019867;outer membrane;4.33350778272943e-05!GO:0030867;rough endoplasmic reticulum membrane;4.65984398272203e-05!GO:0044440;endosomal part;4.92362655373442e-05!GO:0010008;endosome membrane;4.92362655373442e-05!GO:0009165;nucleotide biosynthetic process;5.22352411296022e-05!GO:0008186;RNA-dependent ATPase activity;5.68941683135179e-05!GO:0005798;Golgi-associated vesicle;5.99746467910586e-05!GO:0035257;nuclear hormone receptor binding;6.05759035626679e-05!GO:0016363;nuclear matrix;6.0833994385441e-05!GO:0008654;phospholipid biosynthetic process;6.71037456146859e-05!GO:0043021;ribonucleoprotein binding;6.83874721424142e-05!GO:0003899;DNA-directed RNA polymerase activity;6.85073530057402e-05!GO:0005762;mitochondrial large ribosomal subunit;7.35929736831922e-05!GO:0000315;organellar large ribosomal subunit;7.35929736831922e-05!GO:0006612;protein targeting to membrane;7.99808111710661e-05!GO:0048471;perinuclear region of cytoplasm;7.99808111710661e-05!GO:0005770;late endosome;8.54450314829858e-05!GO:0005096;GTPase activator activity;8.95205181855453e-05!GO:0003714;transcription corepressor activity;9.32285895295967e-05!GO:0045454;cell redox homeostasis;9.67570097554651e-05!GO:0019843;rRNA binding;0.000103243497368281!GO:0000139;Golgi membrane;0.000110225602367007!GO:0016044;membrane organization and biogenesis;0.000110442508708844!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00011191882206883!GO:0016564;transcription repressor activity;0.00012772853246271!GO:0005741;mitochondrial outer membrane;0.000146963546995892!GO:0003682;chromatin binding;0.000167950088861!GO:0007243;protein kinase cascade;0.000170012058842526!GO:0051168;nuclear export;0.000170408565390348!GO:0006302;double-strand break repair;0.000172099320943318!GO:0004004;ATP-dependent RNA helicase activity;0.000179143303809052!GO:0005874;microtubule;0.000182314703151949!GO:0006310;DNA recombination;0.000188554355664556!GO:0015980;energy derivation by oxidation of organic compounds;0.000196542059474535!GO:0016491;oxidoreductase activity;0.000211404438167573!GO:0051087;chaperone binding;0.000262724900892543!GO:0005773;vacuole;0.000276281433335424!GO:0000059;protein import into nucleus, docking;0.000285957243645839!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000305455636425343!GO:0005885;Arp2/3 protein complex;0.000324786853444432!GO:0000314;organellar small ribosomal subunit;0.000329186929825283!GO:0005763;mitochondrial small ribosomal subunit;0.000329186929825283!GO:0007093;mitotic cell cycle checkpoint;0.000346023815496274!GO:0005048;signal sequence binding;0.000348368995052492!GO:0042802;identical protein binding;0.000421829998059291!GO:0016126;sterol biosynthetic process;0.000424247168708912!GO:0000786;nucleosome;0.000432246546524957!GO:0007052;mitotic spindle organization and biogenesis;0.000476103877519677!GO:0005905;coated pit;0.00048978365785848!GO:0003690;double-stranded DNA binding;0.00049640848369742!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000537060318837333!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000583129770513497!GO:0003678;DNA helicase activity;0.000662441669888001!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000671972429840225!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000683458492092925!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000684833669422287!GO:0045045;secretory pathway;0.000694317903913811!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000696186249118361!GO:0006383;transcription from RNA polymerase III promoter;0.000698102371669501!GO:0003729;mRNA binding;0.000708008899958358!GO:0033116;ER-Golgi intermediate compartment membrane;0.000749068183459094!GO:0006950;response to stress;0.000757414905504427!GO:0065007;biological regulation;0.000764342294366657!GO:0031324;negative regulation of cellular metabolic process;0.000793017337104689!GO:0007017;microtubule-based process;0.000841993369559971!GO:0000323;lytic vacuole;0.000866636020064674!GO:0005764;lysosome;0.000866636020064674!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000949163490741983!GO:0031072;heat shock protein binding;0.000994353305909588!GO:0003684;damaged DNA binding;0.00102718818215889!GO:0030695;GTPase regulator activity;0.00105789488588023!GO:0006414;translational elongation;0.0010584565949456!GO:0051920;peroxiredoxin activity;0.001113425886647!GO:0015631;tubulin binding;0.00112094749750746!GO:0051252;regulation of RNA metabolic process;0.00116320690060953!GO:0007088;regulation of mitosis;0.00117672675259487!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00130703814526423!GO:0006891;intra-Golgi vesicle-mediated transport;0.00131770437830339!GO:0051052;regulation of DNA metabolic process;0.00134829687596811!GO:0006695;cholesterol biosynthetic process;0.00139873556000453!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00140899331740055!GO:0007265;Ras protein signal transduction;0.00140899331740055!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00140923553767049!GO:0000082;G1/S transition of mitotic cell cycle;0.00143999320333525!GO:0008250;oligosaccharyl transferase complex;0.00145224698296846!GO:0004674;protein serine/threonine kinase activity;0.00147330976643438!GO:0048500;signal recognition particle;0.00148553298494564!GO:0043681;protein import into mitochondrion;0.00151753361560547!GO:0006402;mRNA catabolic process;0.00154876835190006!GO:0005791;rough endoplasmic reticulum;0.00156163288829446!GO:0006626;protein targeting to mitochondrion;0.00158773590055484!GO:0009892;negative regulation of metabolic process;0.00161278093267565!GO:0065009;regulation of a molecular function;0.00181504460504044!GO:0008234;cysteine-type peptidase activity;0.00185139493538815!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00185355273406847!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00185355273406847!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00185355273406847!GO:0005083;small GTPase regulator activity;0.00186033863664487!GO:0005684;U2-dependent spliceosome;0.00186524388717602!GO:0030027;lamellipodium;0.00189733578300182!GO:0035258;steroid hormone receptor binding;0.0019116983473973!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00192277700529842!GO:0030133;transport vesicle;0.00203427181414919!GO:0004576;oligosaccharyl transferase activity;0.0022247913713406!GO:0008312;7S RNA binding;0.00232572184803759!GO:0030880;RNA polymerase complex;0.00233210815913011!GO:0006289;nucleotide-excision repair;0.00242391955157959!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00243072641974489!GO:0006091;generation of precursor metabolites and energy;0.00248140488293725!GO:0030658;transport vesicle membrane;0.0025202058745681!GO:0005637;nuclear inner membrane;0.00257945371617464!GO:0031323;regulation of cellular metabolic process;0.00274630267213578!GO:0051789;response to protein stimulus;0.00290811045474132!GO:0006986;response to unfolded protein;0.00290811045474132!GO:0001726;ruffle;0.00291286017921134!GO:0009116;nucleoside metabolic process;0.0029667983577804!GO:0032508;DNA duplex unwinding;0.00297951406306297!GO:0032392;DNA geometric change;0.00297951406306297!GO:0048522;positive regulation of cellular process;0.00298043710162317!GO:0006839;mitochondrial transport;0.0030963403885232!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00313736648849339!GO:0015399;primary active transmembrane transporter activity;0.00313736648849339!GO:0030118;clathrin coat;0.00315507268181387!GO:0008139;nuclear localization sequence binding;0.00315507268181387!GO:0046483;heterocycle metabolic process;0.00323987197918944!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00327949774655687!GO:0045047;protein targeting to ER;0.00327949774655687!GO:0030659;cytoplasmic vesicle membrane;0.00329967179042387!GO:0005876;spindle microtubule;0.00330355187956749!GO:0030521;androgen receptor signaling pathway;0.00346027198250365!GO:0016197;endosome transport;0.00349456048982623!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00363088450935208!GO:0008632;apoptotic program;0.00367572232538408!GO:0006352;transcription initiation;0.00368491012497804!GO:0016251;general RNA polymerase II transcription factor activity;0.00369636504554863!GO:0000922;spindle pole;0.00373309960087096!GO:0006401;RNA catabolic process;0.0037354912886101!GO:0030134;ER to Golgi transport vesicle;0.00373866566300921!GO:0044452;nucleolar part;0.0037916744690791!GO:0030663;COPI coated vesicle membrane;0.00385198671610916!GO:0030126;COPI vesicle coat;0.00385198671610916!GO:0018196;peptidyl-asparagine modification;0.00385313958375306!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00385313958375306!GO:0030041;actin filament polymerization;0.00390709468914582!GO:0006268;DNA unwinding during replication;0.00392674742071505!GO:0051540;metal cluster binding;0.00401494522278485!GO:0051536;iron-sulfur cluster binding;0.00401494522278485!GO:0032984;macromolecular complex disassembly;0.00409117349063567!GO:0009112;nucleobase metabolic process;0.00444563950596738!GO:0051539;4 iron, 4 sulfur cluster binding;0.00456511958344398!GO:0022406;membrane docking;0.0046720442648067!GO:0048278;vesicle docking;0.0046720442648067!GO:0006350;transcription;0.0046922318280251!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00471312063936836!GO:0000428;DNA-directed RNA polymerase complex;0.00471312063936836!GO:0008180;signalosome;0.0047459755426349!GO:0003779;actin binding;0.00509576473887635!GO:0017166;vinculin binding;0.00517888529341492!GO:0030127;COPII vesicle coat;0.00526763797699345!GO:0012507;ER to Golgi transport vesicle membrane;0.00526763797699345!GO:0042770;DNA damage response, signal transduction;0.00526763797699345!GO:0016741;transferase activity, transferring one-carbon groups;0.00526763797699345!GO:0007006;mitochondrial membrane organization and biogenesis;0.00556342137873088!GO:0030660;Golgi-associated vesicle membrane;0.00556342137873088!GO:0044433;cytoplasmic vesicle part;0.00556342137873088!GO:0000910;cytokinesis;0.00560329634976881!GO:0008022;protein C-terminus binding;0.00574158806150823!GO:0003711;transcription elongation regulator activity;0.00588970402149787!GO:0007050;cell cycle arrest;0.005911971702013!GO:0050662;coenzyme binding;0.00601318165244487!GO:0006897;endocytosis;0.0060635313235245!GO:0010324;membrane invagination;0.0060635313235245!GO:0006405;RNA export from nucleus;0.00608185609292099!GO:0047485;protein N-terminus binding;0.00627367564948896!GO:0007242;intracellular signaling cascade;0.00634371656721278!GO:0043624;cellular protein complex disassembly;0.0064610786353777!GO:0046474;glycerophospholipid biosynthetic process;0.0064610786353777!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0064610786353777!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0064610786353777!GO:0046489;phosphoinositide biosynthetic process;0.0064637858860236!GO:0008168;methyltransferase activity;0.00652227372065572!GO:0016301;kinase activity;0.00673871472959481!GO:0006892;post-Golgi vesicle-mediated transport;0.00682498456662967!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00685497999054355!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00686864124207354!GO:0016584;nucleosome positioning;0.006964426144864!GO:0048487;beta-tubulin binding;0.00697739521369473!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00754972183508778!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00767877870548346!GO:0032940;secretion by cell;0.00779827525305414!GO:0043241;protein complex disassembly;0.0078530478638639!GO:0008033;tRNA processing;0.00792987904731435!GO:0006284;base-excision repair;0.00796392688922327!GO:0015992;proton transport;0.0080291717726989!GO:0006338;chromatin remodeling;0.00814954956362475!GO:0006818;hydrogen transport;0.00815752076578316!GO:0006904;vesicle docking during exocytosis;0.00828591557529834!GO:0000049;tRNA binding;0.00828591557529834!GO:0006595;polyamine metabolic process;0.00840315476480062!GO:0043488;regulation of mRNA stability;0.00841602471591843!GO:0043487;regulation of RNA stability;0.00841602471591843!GO:0031625;ubiquitin protein ligase binding;0.00880556349211111!GO:0030132;clathrin coat of coated pit;0.00882477879884485!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00886102598312172!GO:0000096;sulfur amino acid metabolic process;0.00886399112109749!GO:0008361;regulation of cell size;0.00886399112109749!GO:0006611;protein export from nucleus;0.00936300915574201!GO:0012506;vesicle membrane;0.00951829129693292!GO:0046467;membrane lipid biosynthetic process;0.00953277150507784!GO:0030137;COPI-coated vesicle;0.00969049289197463!GO:0016481;negative regulation of transcription;0.0100515285899838!GO:0005832;chaperonin-containing T-complex;0.0100515285899838!GO:0000819;sister chromatid segregation;0.0100926596949233!GO:0016408;C-acyltransferase activity;0.0104109183659773!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0106114300827988!GO:0043022;ribosome binding;0.0106711771119961!GO:0005099;Ras GTPase activator activity;0.0106711771119961!GO:0051101;regulation of DNA binding;0.01091873537584!GO:0008154;actin polymerization and/or depolymerization;0.010920558993435!GO:0006220;pyrimidine nucleotide metabolic process;0.0109536677986555!GO:0004527;exonuclease activity;0.01117008348876!GO:0006144;purine base metabolic process;0.0112017268838555!GO:0000070;mitotic sister chromatid segregation;0.0112465739941914!GO:0016049;cell growth;0.0112565208821477!GO:0030833;regulation of actin filament polymerization;0.0117426090758344!GO:0051287;NAD binding;0.0117683227134537!GO:0000339;RNA cap binding;0.0118923158484928!GO:0031901;early endosome membrane;0.0120791274558972!GO:0000209;protein polyubiquitination;0.012142882138364!GO:0005856;cytoskeleton;0.012209421188833!GO:0005862;muscle thin filament tropomyosin;0.0125464687224755!GO:0042393;histone binding;0.0127477154871137!GO:0001558;regulation of cell growth;0.0127700304961804!GO:0006275;regulation of DNA replication;0.012878962544934!GO:0003746;translation elongation factor activity;0.0130079116252603!GO:0005938;cell cortex;0.0130734590979282!GO:0006376;mRNA splice site selection;0.0134181074287957!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0134181074287957!GO:0031570;DNA integrity checkpoint;0.0136269207413829!GO:0030384;phosphoinositide metabolic process;0.0136362282470741!GO:0015036;disulfide oxidoreductase activity;0.0138492432375399!GO:0006509;membrane protein ectodomain proteolysis;0.0138537485804332!GO:0033619;membrane protein proteolysis;0.0138537485804332!GO:0005869;dynactin complex;0.0141367818326427!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0141827469732387!GO:0030518;steroid hormone receptor signaling pathway;0.0145571571319239!GO:0043492;ATPase activity, coupled to movement of substances;0.0146426252854523!GO:0006740;NADPH regeneration;0.0148604566164726!GO:0006098;pentose-phosphate shunt;0.0148604566164726!GO:0050681;androgen receptor binding;0.0149034471583802!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0150683714189055!GO:0051128;regulation of cellular component organization and biogenesis;0.0151786578564345!GO:0032200;telomere organization and biogenesis;0.0152543499811736!GO:0000723;telomere maintenance;0.0152543499811736!GO:0005669;transcription factor TFIID complex;0.0154858439388252!GO:0007266;Rho protein signal transduction;0.0158891895936648!GO:0004003;ATP-dependent DNA helicase activity;0.0162741546487287!GO:0051098;regulation of binding;0.0166991807803492!GO:0004177;aminopeptidase activity;0.016843828231502!GO:0009967;positive regulation of signal transduction;0.0169037337118735!GO:0007040;lysosome organization and biogenesis;0.0172819591263602!GO:0004197;cysteine-type endopeptidase activity;0.0173855824303402!GO:0031124;mRNA 3'-end processing;0.0174704350879509!GO:0016272;prefoldin complex;0.0179892038592143!GO:0030119;AP-type membrane coat adaptor complex;0.0180187013110954!GO:0019783;small conjugating protein-specific protease activity;0.0180787061844599!GO:0004518;nuclease activity;0.0181942235789722!GO:0007021;tubulin folding;0.018401059419628!GO:0043284;biopolymer biosynthetic process;0.0189591317763783!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0189983435969217!GO:0000152;nuclear ubiquitin ligase complex;0.0192817855557997!GO:0000725;recombinational repair;0.0192817855557997!GO:0000724;double-strand break repair via homologous recombination;0.0192817855557997!GO:0007034;vacuolar transport;0.0194208611766822!GO:0030496;midbody;0.019657116046141!GO:0048660;regulation of smooth muscle cell proliferation;0.0196851603848379!GO:0000287;magnesium ion binding;0.0198642851823797!GO:0045893;positive regulation of transcription, DNA-dependent;0.0199505152242136!GO:0004843;ubiquitin-specific protease activity;0.0207060536674553!GO:0022411;cellular component disassembly;0.020975192122827!GO:0050790;regulation of catalytic activity;0.0211579060566236!GO:0006378;mRNA polyadenylation;0.0215612767942271!GO:0010468;regulation of gene expression;0.0218362462189568!GO:0000228;nuclear chromosome;0.0229781852345287!GO:0008610;lipid biosynthetic process;0.0229781903158141!GO:0003756;protein disulfide isomerase activity;0.0229995802352947!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0229995802352947!GO:0045941;positive regulation of transcription;0.0229995802352947!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0230277062940197!GO:0051656;establishment of organelle localization;0.0231054224584378!GO:0043281;regulation of caspase activity;0.0233070560443837!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0234223969318288!GO:0006650;glycerophospholipid metabolic process;0.0234223969318288!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0234571489667002!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0235732347348468!GO:0007033;vacuole organization and biogenesis;0.0238191226328884!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.02385766121823!GO:0006497;protein amino acid lipidation;0.0240413609497439!GO:0043596;nuclear replication fork;0.0240413609497439!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0246961228032424!GO:0015002;heme-copper terminal oxidase activity;0.0246961228032424!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0246961228032424!GO:0004129;cytochrome-c oxidase activity;0.0246961228032424!GO:0030176;integral to endoplasmic reticulum membrane;0.0247524544266908!GO:0046128;purine ribonucleoside metabolic process;0.0251111088935564!GO:0042278;purine nucleoside metabolic process;0.0251111088935564!GO:0000792;heterochromatin;0.0254443963439897!GO:0030131;clathrin adaptor complex;0.0257490420181352!GO:0030032;lamellipodium biogenesis;0.0259386897059493!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0259943336662406!GO:0007346;regulation of progression through mitotic cell cycle;0.0260928610733437!GO:0019904;protein domain specific binding;0.0262072967681767!GO:0005758;mitochondrial intermembrane space;0.0266671504873255!GO:0022890;inorganic cation transmembrane transporter activity;0.0267613194868009!GO:0044262;cellular carbohydrate metabolic process;0.0270604996359055!GO:0008097;5S rRNA binding;0.0272689600322839!GO:0005774;vacuolar membrane;0.0273962526254469!GO:0004221;ubiquitin thiolesterase activity;0.0275204457154847!GO:0033673;negative regulation of kinase activity;0.0294171567289407!GO:0006469;negative regulation of protein kinase activity;0.0294171567289407!GO:0022415;viral reproductive process;0.0301577225266216!GO:0016790;thiolester hydrolase activity;0.0306381336948004!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0306638201906469!GO:0006778;porphyrin metabolic process;0.0306927551500646!GO:0033013;tetrapyrrole metabolic process;0.0306927551500646!GO:0005784;translocon complex;0.0320085253752991!GO:0035035;histone acetyltransferase binding;0.0320085253752991!GO:0005850;eukaryotic translation initiation factor 2 complex;0.032396928198756!GO:0000077;DNA damage checkpoint;0.0329797490248034!GO:0031970;organelle envelope lumen;0.0332481278994895!GO:0005680;anaphase-promoting complex;0.033473364326251!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0339763935972374!GO:0046966;thyroid hormone receptor binding;0.0340829431863671!GO:0006270;DNA replication initiation;0.0341032299031269!GO:0031902;late endosome membrane;0.0341613947743576!GO:0009124;nucleoside monophosphate biosynthetic process;0.0344671353300837!GO:0009123;nucleoside monophosphate metabolic process;0.0344671353300837!GO:0005875;microtubule associated complex;0.0345605378856476!GO:0006607;NLS-bearing substrate import into nucleus;0.0349659829253543!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0350258830848967!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0350258830848967!GO:0051348;negative regulation of transferase activity;0.035123044257687!GO:0008536;Ran GTPase binding;0.0354056059660052!GO:0008017;microtubule binding;0.0360586967239164!GO:0043414;biopolymer methylation;0.0361176661400134!GO:0008538;proteasome activator activity;0.0371940461202732!GO:0022408;negative regulation of cell-cell adhesion;0.0372502159147955!GO:0033559;unsaturated fatty acid metabolic process;0.0372502159147955!GO:0006636;unsaturated fatty acid biosynthetic process;0.0372502159147955!GO:0000781;chromosome, telomeric region;0.0380210082276659!GO:0009066;aspartate family amino acid metabolic process;0.0381424113967501!GO:0016407;acetyltransferase activity;0.0389753110573327!GO:0009303;rRNA transcription;0.0391820375312534!GO:0031577;spindle checkpoint;0.0403619535127037!GO:0008629;induction of apoptosis by intracellular signals;0.0406917607743616!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0407097788929167!GO:0007162;negative regulation of cell adhesion;0.0410267810366059!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0417486321129634!GO:0031529;ruffle organization and biogenesis;0.0418526411472616!GO:0030125;clathrin vesicle coat;0.0425640354271201!GO:0030665;clathrin coated vesicle membrane;0.0425640354271201!GO:0031371;ubiquitin conjugating enzyme complex;0.0426854021718387!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0426854021718387!GO:0042585;germinal vesicle;0.0426854021718387!GO:0046112;nucleobase biosynthetic process;0.0429578821887587!GO:0030100;regulation of endocytosis;0.0430140096764632!GO:0033367;protein localization in mast cell secretory granule;0.0430140096764632!GO:0033365;protein localization in organelle;0.0430140096764632!GO:0033371;T cell secretory granule organization and biogenesis;0.0430140096764632!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0430140096764632!GO:0033375;protease localization in T cell secretory granule;0.0430140096764632!GO:0042629;mast cell granule;0.0430140096764632!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0430140096764632!GO:0033364;mast cell secretory granule organization and biogenesis;0.0430140096764632!GO:0033380;granzyme B localization in T cell secretory granule;0.0430140096764632!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0430140096764632!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0430140096764632!GO:0033368;protease localization in mast cell secretory granule;0.0430140096764632!GO:0033366;protein localization in secretory granule;0.0430140096764632!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0430140096764632!GO:0033374;protein localization in T cell secretory granule;0.0430140096764632!GO:0031123;RNA 3'-end processing;0.0433046841447701!GO:0032259;methylation;0.0433598843944652!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0433598843944652!GO:0042026;protein refolding;0.0437819506030648!GO:0007004;telomere maintenance via telomerase;0.04403073458566!GO:0000726;non-recombinational repair;0.04403073458566!GO:0006739;NADP metabolic process;0.044926181183223!GO:0051336;regulation of hydrolase activity;0.0450637963958576!GO:0005092;GDP-dissociation inhibitor activity;0.0451044898467236!GO:0016601;Rac protein signal transduction;0.0451044898467236!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0453575848087222!GO:0051053;negative regulation of DNA metabolic process;0.0456735914280884!GO:0009119;ribonucleoside metabolic process;0.0456735914280884!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0460923403842604!GO:0035267;NuA4 histone acetyltransferase complex;0.0462693331265456!GO:0006417;regulation of translation;0.0466909205551905!GO:0050811;GABA receptor binding;0.0471002843824854!GO:0001635;calcitonin gene-related polypeptide receptor activity;0.04756706156347!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0479150746472302!GO:0016615;malate dehydrogenase activity;0.0479637268065516!GO:0000178;exosome (RNase complex);0.048194979470078!GO:0045879;negative regulation of smoothened signaling pathway;0.0482401590093898!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0486785717224668!GO:0017134;fibroblast growth factor binding;0.0488626474584249 | |||
|sample_id=11243 | |||
|sample_note= | |||
|sample_sex=unknown | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=umbilical vein | |||
|top_motifs=ALX1:1.85455524367;SOX{8,9,10}:1.73954667595;RXR{A,B,G}:1.67411449449;FOX{I1,J2}:1.5992973674;NFATC1..3:1.52967983405;IKZF2:1.4034332679;PAX6:1.20060342974;PITX1..3:1.19067471102;HBP1_HMGB_SSRP1_UBTF:1.17880811536;PAX1,9:1.12685299852;SOX2:1.07761011382;ELF1,2,4:1.06680238515;E2F1..5:1.05973670347;ADNP_IRX_SIX_ZHX:1.040444339;SOX5:1.00994386269;POU3F1..4:0.952543031076;YY1:0.945232766958;NFY{A,B,C}:0.893544975048;CDC5L:0.883760660827;TLX1..3_NFIC{dimer}:0.867858600981;FOXD3:0.830392202595;GATA6:0.814988821423;TFDP1:0.807580438163;ARID5B:0.798498151945;FOXP1:0.784263415754;STAT1,3:0.755980190673;LHX3,4:0.754809024511;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.752715855631;ZFP161:0.73379148006;GFI1:0.695033094948;MYB:0.680677204761;PBX1:0.669860915211;ZNF143:0.633901310593;PAX8:0.629287112103;EN1,2:0.621414464801;AR:0.613126062886;NRF1:0.602042000527;ETS1,2:0.597853113915;EVI1:0.584989156716;NKX2-2,8:0.550951379898;ONECUT1,2:0.544835064143;GATA4:0.488068328959;SPIB:0.475549096032;FOXA2:0.47213346413;SOX17:0.409393639571;HMGA1,2:0.408430572702;TEAD1:0.404038482301;GZF1:0.393273030974;POU1F1:0.386932955399;NR3C1:0.384788254649;IKZF1:0.383360885935;RBPJ:0.368911513872;NANOG:0.362495553575;TFAP2{A,C}:0.352134062564;TEF:0.337501173647;GFI1B:0.329820090455;LEF1_TCF7_TCF7L1,2:0.290423706726;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.285087528097;T:0.27446495533;HES1:0.211600375271;FOXN1:0.210684350194;TOPORS:0.186024165134;SPZ1:0.175838419304;TFAP4:0.157904039219;DMAP1_NCOR{1,2}_SMARC:0.156945616175;NKX2-3_NKX2-5:0.149895321394;bHLH_family:0.146862353929;HIC1:0.146584383546;XCPE1{core}:0.145603664379;HOX{A5,B5}:0.120623810531;PRDM1:0.109143617268;NFIX:0.0983881315285;AIRE:0.093933335468;TAL1_TCF{3,4,12}:0.0894633889765;HNF4A_NR2F1,2:0.0762050422354;MYOD1:0.0689072760521;ZBTB16:0.0622985283693;SPI1:0.0580201122005;NR5A1,2:0.0498431271298;MZF1:0.0399427452935;SP1:0.0394476690575;NFE2:0.0181051729366;MAZ:0.0161816787011;CUX2:0.0129829103576;SREBF1,2:0.00782708466785;ZIC1..3:0.00744712270887;GTF2I:-0.00439968107174;UFEwm:-0.00617101296307;BPTF:-0.00846707320694;EGR1..3:-0.0135732149023;TP53:-0.0157019039196;MTE{core}:-0.0164479511115;FOXO1,3,4:-0.0204668166609;STAT2,4,6:-0.0223221701864;BACH2:-0.0349983218611;PAX5:-0.0358388443727;CRX:-0.0528681208522;ALX4:-0.0557058995455;PAX4:-0.0563282144194;IRF1,2:-0.0567639609276;FOXQ1:-0.0626262957803;HOXA9_MEIS1:-0.0633188853551;MED-1{core}:-0.0719472533116;NANOG{mouse}:-0.0990087460299;FOS_FOS{B,L1}_JUN{B,D}:-0.113000462887;FOX{D1,D2}:-0.120082995164;GTF2A1,2:-0.122319539607;NHLH1,2:-0.124520194872;PDX1:-0.133538053924;BREu{core}:-0.136836366544;ZBTB6:-0.139800745212;STAT5{A,B}:-0.140811940812;NFE2L2:-0.142327567706;REST:-0.15535003904;ZNF238:-0.156766736206;SMAD1..7,9:-0.165503866711;GCM1,2:-0.167646224557;MEF2{A,B,C,D}:-0.168457634107;RORA:-0.192068500506;CREB1:-0.19613847169;MYBL2:-0.196489705432;FOXL1:-0.20438457678;HNF1A:-0.213069606484;IRF7:-0.219086377036;FOSL2:-0.22273157486;PAX3,7:-0.224237856978;KLF4:-0.224626014775;XBP1:-0.22883528779;PRRX1,2:-0.239194705863;ZNF384:-0.242968516179;TFAP2B:-0.245465537284;OCT4_SOX2{dimer}:-0.251611214852;HSF1,2:-0.259731269549;HAND1,2:-0.262744909998;SRF:-0.265822728364;EBF1:-0.273567090628;ATF6:-0.275418671207;TGIF1:-0.288503291;PATZ1:-0.294447496973;LMO2:-0.301453512501;ZNF423:-0.304581296682;CDX1,2,4:-0.304997399137;POU5F1:-0.352827773577;NR1H4:-0.355442066984;PPARG:-0.356351843664;FOXM1:-0.360178217019;PAX2:-0.361526845374;ELK1,4_GABP{A,B1}:-0.373065408605;NKX3-1:-0.392187642262;AHR_ARNT_ARNT2:-0.410994745712;RFX1:-0.436407784441;NFKB1_REL_RELA:-0.462910764424;FOX{F1,F2,J1}:-0.470106052668;POU6F1:-0.472820653345;ZNF148:-0.476484373542;NKX3-2:-0.509420963253;SNAI1..3:-0.520129730994;NFE2L1:-0.534842012104;DBP:-0.551175074172;ATF4:-0.568813419158;TLX2:-0.570436381031;ATF2:-0.615806197226;MYFfamily:-0.621294147541;FOXP3:-0.663804977899;RUNX1..3:-0.689658880505;MTF1:-0.689799309659;RFX2..5_RFXANK_RFXAP:-0.703606217311;EP300:-0.7078227411;GLI1..3:-0.723573143868;CEBPA,B_DDIT3:-0.723711367451;HLF:-0.732463461919;ESRRA:-0.735661786952;POU2F1..3:-0.748717008824;RREB1:-0.76409367791;TBP:-0.790250225606;ATF5_CREB3:-0.790875809849;TBX4,5:-0.801424303624;HOX{A6,A7,B6,B7}:-0.830055468411;NR6A1:-0.872245780097;VSX1,2:-0.927936116726;JUN:-0.930428992809;ZEB1:-1.01251315079;HOX{A4,D4}:-1.09615966071;RXRA_VDR{dimer}:-1.10061908381;NKX6-1,2:-1.10308898377;NKX2-1,4:-1.14182326075;NFIL3:-1.15236382946;HMX1:-1.15823051957;TFCP2:-1.18418636288;MAFB:-1.21545042161;HIF1A:-1.22828824053;ESR1:-1.418008171 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11243-116E1;search_select_hide=table117:FF:11243-116E1 | |||
}} | }} |
Latest revision as of 16:27, 3 June 2020
Name: | Endothelial Cells - Umbilical vein, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10872 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10872
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10872
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.814 |
10 | 10 | 0.986 |
100 | 100 | 0.433 |
101 | 101 | 0.925 |
102 | 102 | 0.565 |
103 | 103 | 0.194 |
104 | 104 | 0.807 |
105 | 105 | 0.771 |
106 | 106 | 0.00781 |
107 | 107 | 0.67 |
108 | 108 | 0.453 |
109 | 109 | 0.273 |
11 | 11 | 0.506 |
110 | 110 | 0.384 |
111 | 111 | 0.72 |
112 | 112 | 0.183 |
113 | 113 | 0.253 |
114 | 114 | 0.35 |
115 | 115 | 0.305 |
116 | 116 | 0.415 |
117 | 117 | 0.745 |
118 | 118 | 0.951 |
119 | 119 | 0.507 |
12 | 12 | 0.508 |
120 | 120 | 0.261 |
121 | 121 | 0.287 |
122 | 122 | 0.221 |
123 | 123 | 0.706 |
124 | 124 | 0.109 |
125 | 125 | 0.575 |
126 | 126 | 0.311 |
127 | 127 | 0.0662 |
128 | 128 | 0.129 |
129 | 129 | 0.824 |
13 | 13 | 0.465 |
130 | 130 | 0.474 |
131 | 131 | 0.245 |
132 | 132 | 0.349 |
133 | 133 | 0.478 |
134 | 134 | 0.935 |
135 | 135 | 0.548 |
136 | 136 | 0.0782 |
137 | 137 | 0.204 |
138 | 138 | 0.804 |
139 | 139 | 0.0183 |
14 | 14 | 0.526 |
140 | 140 | 0.184 |
141 | 141 | 0.317 |
142 | 142 | 0.0055 |
143 | 143 | 0.0533 |
144 | 144 | 0.703 |
145 | 145 | 0.948 |
146 | 146 | 0.993 |
147 | 147 | 0.778 |
148 | 148 | 0.0455 |
149 | 149 | 0.517 |
15 | 15 | 0.204 |
150 | 150 | 0.824 |
151 | 151 | 0.282 |
152 | 152 | 0.35 |
153 | 153 | 0.116 |
154 | 154 | 0.711 |
155 | 155 | 0.183 |
156 | 156 | 0.207 |
157 | 157 | 0.0604 |
158 | 158 | 0.0378 |
159 | 159 | 0.0931 |
16 | 16 | 0.281 |
160 | 160 | 0.836 |
161 | 161 | 0.131 |
162 | 162 | 0.931 |
163 | 163 | 0.884 |
164 | 164 | 0.273 |
165 | 165 | 0.523 |
166 | 166 | 0.812 |
167 | 167 | 0.426 |
168 | 168 | 0.71 |
169 | 169 | 0.201 |
17 | 17 | 0.201 |
18 | 18 | 0.00828 |
19 | 19 | 0.474 |
2 | 2 | 0.29 |
20 | 20 | 0.209 |
21 | 21 | 0.476 |
22 | 22 | 0.179 |
23 | 23 | 0.0155 |
24 | 24 | 0.954 |
25 | 25 | 0.517 |
26 | 26 | 0.181 |
27 | 27 | 0.203 |
28 | 28 | 0.73 |
29 | 29 | 0.79 |
3 | 3 | 0.58 |
30 | 30 | 0.274 |
31 | 31 | 0.156 |
32 | 32 | 0.00765 |
33 | 33 | 0.728 |
34 | 34 | 0.901 |
35 | 35 | 0.162 |
36 | 36 | 0.238 |
37 | 37 | 0.447 |
38 | 38 | 0.733 |
39 | 39 | 0.541 |
4 | 4 | 0.11 |
40 | 40 | 0.745 |
41 | 41 | 0.839 |
42 | 42 | 0.884 |
43 | 43 | 0.0813 |
44 | 44 | 0.296 |
45 | 45 | 0.319 |
46 | 46 | 0.102 |
47 | 47 | 0.94 |
48 | 48 | 0.682 |
49 | 49 | 0.104 |
5 | 5 | 0.354 |
50 | 50 | 0.994 |
51 | 51 | 0.296 |
52 | 52 | 0.181 |
53 | 53 | 0.48 |
54 | 54 | 0.253 |
55 | 55 | 0.922 |
56 | 56 | 0.527 |
57 | 57 | 0.701 |
58 | 58 | 0.0746 |
59 | 59 | 0.167 |
6 | 6 | 0.641 |
60 | 60 | 0.0378 |
61 | 61 | 0.911 |
62 | 62 | 0.0803 |
63 | 63 | 0.627 |
64 | 64 | 0.306 |
65 | 65 | 0.0719 |
66 | 66 | 0.218 |
67 | 67 | 0.966 |
68 | 68 | 0.631 |
69 | 69 | 0.633 |
7 | 7 | 0.928 |
70 | 70 | 9.6009e-5 |
71 | 71 | 0.268 |
72 | 72 | 0.981 |
73 | 73 | 0.848 |
74 | 74 | 0.645 |
75 | 75 | 0.706 |
76 | 76 | 0.768 |
77 | 77 | 0.116 |
78 | 78 | 0.968 |
79 | 79 | 0.33 |
8 | 8 | 0.905 |
80 | 80 | 0.608 |
81 | 81 | 0.102 |
82 | 82 | 0.139 |
83 | 83 | 0.678 |
84 | 84 | 0.729 |
85 | 85 | 0.00785 |
86 | 86 | 0.508 |
87 | 87 | 0.63 |
88 | 88 | 0.479 |
89 | 89 | 0.0322 |
9 | 9 | 0.398 |
90 | 90 | 0.58 |
91 | 91 | 0.495 |
92 | 92 | 0.322 |
93 | 93 | 0.58 |
94 | 94 | 0.0996 |
95 | 95 | 0.703 |
96 | 96 | 0.366 |
97 | 97 | 0.584 |
98 | 98 | 0.129 |
99 | 99 | 0.176 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10872
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000247 human endothelial cell of umbilical vein sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
0002618 (endothelial cell of umbilical vein)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
0000247 (human endothelial cell of umbilical vein sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)