FF:10469-106I1: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (24 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005841 | ||
|accession_numbers=CAGE;DRX007989;DRR008861;DRZ000286;DRZ001671;DRZ011636;DRZ013021 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001052,UBERON:0000160,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3119 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101532 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101532 | |fonse_cell_line=FF:0101532 | ||
|fonse_cell_line_closure=FF:0101532 | |fonse_cell_line_closure=FF:0101532 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rectal%2520cancer%2520cell%2520line%253aTT1TKB.CNhs11255.10469-106I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10469-106I1 | |id=FF:10469-106I1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101532 | ||
|is_obsolete= | |||
|library_id=CNhs11255 | |||
|library_id_phase_based=2:CNhs11255 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10469 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10469 | |||
|name=rectal cancer cell line:TT1TKB | |name=rectal cancer cell line:TT1TKB | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11255,LSID757,release008,COMPLETED | |profile_hcage=CNhs11255,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.255418380816618,0,0,-0.160318030086386,0,-0.079386748866786,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.136810886339635,0,0,0,0,0,0,0,0,0.601194100559036,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0.193276109134867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0536511514102425,0,0,0,0,0,-0.142917013326902,0,0,0,-0.00613512660935267,-0.211197402695869,0,0,0.0536511514102425,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139411979009774,0.107302302820485,0,0,-0.0309382406631704,-0.0620738941849875,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.107302302820485,-0.0980353512377064,0,0,0.107302302820485,0.107302302820485,0,0,0,0,0,0,0,0.0178316207805345,0,-0.045686880627524,0.467463577549207,0,0,-0.137231819236236,0.193276109134867,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.0615275117827245,0.0389580417431167,0,0,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.441717411038115,0.168639645308502,0,0,0,-0.783781101120266,0.464902731661891,0,0,-0.0681287003416315,-0.127698467150416,0,0,-0.391044581551635,0,0.109308620899437,-0.114202938838955,0,0.110963691640264,0,0,0,0,0,0,0,0,0,0,0,0.132735243126226,-0.06197810061287,0,0.193276109134867,0.193276109134867,0,0.00209654963984995,0,0,0.098284989907902,-0.0763558673499943,0.0059588692663507,0.593673769314725,0,-0.195087424189428,-0.178015811820577,-0.0745602295537115,-0.00613512660935267,-0.147401849371139,-0.0826794167293624,0,-0.317172673803506,-0.459713808398063,0.131954319315222,0.0516398214880167,0.0390594324842643,-0.197601869232069,0.254083272321423,0,0.739125528083012,0,0.471790945644091,0,0.0591558148568692,0.0899798208698961,0.126930099155212,-0.0562516283340365,-0.140375058673607,-0.0078546194781779,0.206807419364347,-0.0395325284566706,-0.457436452896595,-0.000186514942621119,-0.28906707687065,0,0.471571145864469,0,0.0809834142561444,0.132489227529014,-0.187426835054195,0,-0.376675158990496,-0.0683442610773682,0.0536511514102425,-0.399355633310571,-0.339120002889933,0,0,-0.198319810976087,0.107302302820485,0.161222332723197,0,0,0,0.0697380502353366,0.0406023923165033,0.0937032591604035,0,-0.052770584126818,-0.00870307236328245,0.0897895787686053,0,0.222394008698827,-0.0948684587903206,0,-0.14543411184682,0,0.159348611613723,-0.0298128535262147,0.341309513580676,-0.422394805391737,-0.0584468268118252,0.29192565018776,-0.161535879957282,0.238062966110268,-0.788939864790226,0.00398038374833543,-0.0881268324752877,0.0884444731951142,-0.88354475051838,-0.679498131621524,0.0385664575254298,-0.294093179887095,0,0.0918962810051063,0,0.178888923122417,0,0.00801847241260034,-0.159976331577915,-0.439289374580686,-0.14155121194751,0,-0.0632006334941084,0.0671451141250164,0,-0.00647854308579887,-0.0465962952360095,0.760771194679201,-0.0430647805141544,0.220705368123754,0.381677800983998,0.116428924137424,0,0.170290369559323,0,0,0.261408763495425,0.144981382130937,0,0.152033918530423,0.00177580585928239,0.177173003402653,0.0773050356999325,0,0,0.74915627162767,0,0,0.594222422632214,-0.069188262167031,-0.426507214823767,-0.0600502323518892,-0.0238666567932392,-0.108622809454255,0,0,0.0157483431696909,0,-0.02018266629731,0,0,-0.15324324203139,-0.116628112990133,0,0,0.107302302820485,0.0947815771155705,0,0,0,0,0,0,0,0.255395164473404,0.256145389856231,0.107302302820485,0.138362697202993,0,0,0,0,0,0.029375501697697,0,0,-1.26577201810373,-0.00861257719487245,0.0702586934584463,0.0966380545674335,0,0.0536511514102425,0,-0.215723402553475,-0.0959342592742389,0,-0.0245604036771468,0,0,0,0,-0.0861409897892114,0,0,0,0,0.0495718457668209,-0.123281985403653,0,0,0,-0.27695440160179,0,0,0,0,-0.1556042800351,0,0,0,0,0.0451904124346056,0.0257204232736435,0,-0.273875835671657,-0.24794681329218,0.635674111608359,0,0.107302302820485,0.119110288105438,0,0,0.266354285015215,0,0,0,0,0,0,0,0.193276109134867,0,1.70392280809833,0,0,0,0,0,0,0,0.107302302820485,0,0,0,-0.311289345012489,-0.0922240566585104,0.193101377291401,0,0,0,0,0,0,0.20503727952158,0.159844943421609,0,0,0,0,0,0,0,0,0.168385746240888,0,0,0,0,0,-0.0969923612426051,0,0.107302302820485,0,0,-0.564807121153884,0,0,0.302732403153156,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141691410030651,-0.079386748866786,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.00658207088849229,0.510836761633236,0,0,0.323602953335328,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286044145389496,0,-0.179905213152425,-0.0159005617533006,0,0,0.0728610074032975,0,0,0,0,0,0,0.065297630538906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107302302820485,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.521557655311467,0,0,0,0,0,0,0.148724955597786,-0.186582345255714,-0.0589015212107271,0,0,0,-0.054385572482455,0,0,-0.0127618504542477,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107302302820485,0,0,0,0,0.71634416859075,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107302302820485,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0.107302302820485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.113472591058905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107302302820485,0,0,0,0,0,0,0,0,0,0,0,0.0229704711740898,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.223945221799764,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.087428497801853,0,0,0.107302302820485,0,0,0,0.0454931255665968,0,0,0,0,0,0,-0.253610608288505,0,0,-0.221390424155522,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,1.25081824334374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0428631957767349,-0.0620738941849875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265010496066099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0536511514102425,0,0,0,0,0,0,0,0.0536511514102425,0,0,0,0,0,-0.140524407045156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01068070451716,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00456070545728162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193276109134867,0,0,0,0,0,0,0.107302302820485,0,0,0,0,0,0,0,0.107302302820485,0,0,0,0,0,-0.109559657116368,0,0.107302302820485,0.107302302820485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0536511514102425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278823958019547,0,0,0,0,0,0,0,0,0,0,0,0,0.107302302820485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0966380545674335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0.193276109134867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0728982710498715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132505248033049,0,0,0,0.348657339459506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380457419895325,-0.097343627213097,0,0.0966380545674335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0.380457419895325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0.0966380545674335,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.0966380545674335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0222659829202185,0,0,-0.0422874684771159,0,-0.0288931844152708,0.176251931065699,0,0,0,0,0,-0.0086592175882785,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261726480866314,0,0,0.0602079695717663,0,0,0,0.107302302820485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0867959861880993,0,-0.0182066456407319,0.242736997382115,0,0,-0.0297177479061726,0,0,0,0,0,-0.174992895090299,0.294456061076628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,0.2020955102699,0,-0.0522774336344757,0,0,0.350294027472197,0,0,0,0.230599413342361 | |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=79.1115 | |rna_weight_ug=79.1115 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1185 | |sample_cell_catalog=RCB1185 | ||
|sample_cell_line=TT1TKB | |sample_cell_line=TT1TKB | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.42310715073302e-251!GO:0043226;organelle;2.4277396945177e-199!GO:0043229;intracellular organelle;5.74349117052164e-199!GO:0043231;intracellular membrane-bound organelle;2.15267517818152e-196!GO:0043227;membrane-bound organelle;3.95174547929943e-196!GO:0005737;cytoplasm;1.8643769781823e-173!GO:0044422;organelle part;8.95511848518172e-138!GO:0044446;intracellular organelle part;2.13934376014698e-136!GO:0044444;cytoplasmic part;2.01886892052345e-111!GO:0044238;primary metabolic process;4.40618675434201e-97!GO:0044237;cellular metabolic process;1.58872783779035e-96!GO:0005634;nucleus;2.227399545324e-91!GO:0043170;macromolecule metabolic process;1.06515935769369e-87!GO:0032991;macromolecular complex;7.99497487503089e-85!GO:0044428;nuclear part;9.13343107239759e-76!GO:0030529;ribonucleoprotein complex;9.13343107239759e-76!GO:0003723;RNA binding;1.86005974469594e-75!GO:0043233;organelle lumen;4.36881806245475e-75!GO:0031974;membrane-enclosed lumen;4.36881806245475e-75!GO:0005515;protein binding;1.71459869214553e-73!GO:0043283;biopolymer metabolic process;2.09704612123339e-53!GO:0005739;mitochondrion;1.83926208285443e-51!GO:0006396;RNA processing;8.43374515984668e-51!GO:0031981;nuclear lumen;7.65843585680115e-50!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.42946726999974e-49!GO:0010467;gene expression;8.43791381129333e-48!GO:0019538;protein metabolic process;1.00187779024479e-46!GO:0016043;cellular component organization and biogenesis;2.18272561542812e-45!GO:0005840;ribosome;3.80584311633148e-43!GO:0006412;translation;7.68239891379137e-43!GO:0033036;macromolecule localization;2.42775949209666e-42!GO:0015031;protein transport;3.24574944860819e-42!GO:0043234;protein complex;6.33998168130335e-42!GO:0044267;cellular protein metabolic process;1.062985313378e-41!GO:0031090;organelle membrane;1.60783293266985e-41!GO:0044260;cellular macromolecule metabolic process;1.32691474277244e-40!GO:0016071;mRNA metabolic process;3.2695138257692e-40!GO:0008104;protein localization;1.56665769420627e-38!GO:0045184;establishment of protein localization;5.45005248437504e-38!GO:0043228;non-membrane-bound organelle;9.09978196756291e-38!GO:0043232;intracellular non-membrane-bound organelle;9.09978196756291e-38!GO:0003735;structural constituent of ribosome;1.62001656991537e-36!GO:0009058;biosynthetic process;2.91508233139333e-35!GO:0008380;RNA splicing;1.4714445352553e-34!GO:0006397;mRNA processing;1.1166124504315e-33!GO:0006996;organelle organization and biogenesis;1.86857975674904e-33!GO:0065003;macromolecular complex assembly;7.41968176167237e-33!GO:0005829;cytosol;1.51756091815437e-32!GO:0009059;macromolecule biosynthetic process;2.32471624451234e-32!GO:0046907;intracellular transport;2.73447054847737e-32!GO:0033279;ribosomal subunit;3.8052291283938e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.26707252171654e-32!GO:0003676;nucleic acid binding;9.85195596407946e-32!GO:0044249;cellular biosynthetic process;1.60513115484284e-31!GO:0031967;organelle envelope;2.98189668593369e-31!GO:0044429;mitochondrial part;4.21620819436754e-31!GO:0031975;envelope;6.35386631079336e-31!GO:0005654;nucleoplasm;8.63995474863703e-30!GO:0006886;intracellular protein transport;4.00384667031252e-29!GO:0022607;cellular component assembly;5.22367199656221e-29!GO:0006259;DNA metabolic process;6.66022946842561e-29!GO:0000166;nucleotide binding;3.03997675721961e-26!GO:0007049;cell cycle;3.58764094998543e-26!GO:0005681;spliceosome;2.28875957509504e-25!GO:0016070;RNA metabolic process;5.30801769871329e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.57597638455736e-24!GO:0044451;nucleoplasm part;3.82580092417419e-24!GO:0005730;nucleolus;5.06317212385866e-22!GO:0051641;cellular localization;7.32273080173842e-21!GO:0051649;establishment of cellular localization;1.02313031398921e-20!GO:0008134;transcription factor binding;4.82588303951826e-20!GO:0012505;endomembrane system;1.66261090623816e-19!GO:0044445;cytosolic part;1.67679645929578e-19!GO:0022402;cell cycle process;1.76659713850575e-19!GO:0032553;ribonucleotide binding;4.67688011930299e-19!GO:0032555;purine ribonucleotide binding;4.67688011930299e-19!GO:0016874;ligase activity;7.27319157164358e-19!GO:0006457;protein folding;1.14929597195415e-18!GO:0044265;cellular macromolecule catabolic process;1.66957036557392e-18!GO:0016462;pyrophosphatase activity;2.01415089940964e-18!GO:0019866;organelle inner membrane;2.19891797224508e-18!GO:0005740;mitochondrial envelope;2.24357166693879e-18!GO:0022618;protein-RNA complex assembly;2.51262474629265e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.63394726093924e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;3.30310908277096e-18!GO:0017111;nucleoside-triphosphatase activity;3.741781316852e-18!GO:0015935;small ribosomal subunit;6.8928748919219e-18!GO:0017076;purine nucleotide binding;6.8928748919219e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.8665651118391e-17!GO:0031966;mitochondrial membrane;2.15670470217547e-17!GO:0006974;response to DNA damage stimulus;2.50524567990282e-17!GO:0019941;modification-dependent protein catabolic process;3.51261074165831e-17!GO:0043632;modification-dependent macromolecule catabolic process;3.51261074165831e-17!GO:0006512;ubiquitin cycle;3.60960878604764e-17!GO:0043285;biopolymer catabolic process;3.99190782848579e-17!GO:0044257;cellular protein catabolic process;6.66595598299844e-17!GO:0006511;ubiquitin-dependent protein catabolic process;8.89784933716246e-17!GO:0006119;oxidative phosphorylation;1.37675056400007e-16!GO:0005743;mitochondrial inner membrane;1.71912241107024e-16!GO:0005694;chromosome;1.75358891563207e-16!GO:0032559;adenyl ribonucleotide binding;2.92747111516723e-16!GO:0005524;ATP binding;3.27097684558822e-16!GO:0000278;mitotic cell cycle;3.71283431431836e-16!GO:0005783;endoplasmic reticulum;7.81791629647307e-16!GO:0031980;mitochondrial lumen;8.33147032609301e-16!GO:0005759;mitochondrial matrix;8.33147032609301e-16!GO:0015934;large ribosomal subunit;2.10077866195556e-15!GO:0009057;macromolecule catabolic process;3.2187264602646e-15!GO:0043412;biopolymer modification;4.17588099880117e-15!GO:0006605;protein targeting;4.96439116134187e-15!GO:0030554;adenyl nucleotide binding;6.02955626247559e-15!GO:0051276;chromosome organization and biogenesis;7.80005351472655e-15!GO:0042254;ribosome biogenesis and assembly;1.18457179655611e-14!GO:0048770;pigment granule;1.23321811793172e-14!GO:0042470;melanosome;1.23321811793172e-14!GO:0008135;translation factor activity, nucleic acid binding;1.70075467122714e-14!GO:0006281;DNA repair;1.75115235010968e-14!GO:0048193;Golgi vesicle transport;3.61054480034708e-14!GO:0044248;cellular catabolic process;3.92941155396432e-14!GO:0044432;endoplasmic reticulum part;5.87396099105641e-14!GO:0044427;chromosomal part;6.13196921562427e-14!GO:0030163;protein catabolic process;6.13196921562427e-14!GO:0051082;unfolded protein binding;6.13196921562427e-14!GO:0006366;transcription from RNA polymerase II promoter;6.52301676933625e-14!GO:0044455;mitochondrial membrane part;1.95958564261362e-13!GO:0016192;vesicle-mediated transport;2.25117432260269e-13!GO:0005635;nuclear envelope;4.28269464784315e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;5.35855328677574e-13!GO:0000375;RNA splicing, via transesterification reactions;5.35855328677574e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.35855328677574e-13!GO:0006464;protein modification process;5.68408245881906e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;6.79104207800384e-13!GO:0003712;transcription cofactor activity;9.44946756811621e-13!GO:0042623;ATPase activity, coupled;1.1284525389258e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.19007900871745e-12!GO:0016604;nuclear body;1.37714426919306e-12!GO:0006913;nucleocytoplasmic transport;1.73988778290376e-12!GO:0016887;ATPase activity;2.14242478314803e-12!GO:0031965;nuclear membrane;2.51658761753519e-12!GO:0000087;M phase of mitotic cell cycle;2.67830386240864e-12!GO:0006323;DNA packaging;2.80082228096596e-12!GO:0022403;cell cycle phase;3.00247051446667e-12!GO:0005794;Golgi apparatus;3.1732291113089e-12!GO:0009719;response to endogenous stimulus;3.25781748494077e-12!GO:0007067;mitosis;3.27218449816522e-12!GO:0051169;nuclear transport;3.76266884602615e-12!GO:0006446;regulation of translational initiation;9.2030912278999e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.46202014027333e-12!GO:0000502;proteasome complex (sensu Eukaryota);9.69917208649767e-12!GO:0043687;post-translational protein modification;1.07276620191065e-11!GO:0004386;helicase activity;1.80635078491287e-11!GO:0005761;mitochondrial ribosome;1.91691685933471e-11!GO:0000313;organellar ribosome;1.91691685933471e-11!GO:0006413;translational initiation;2.80130584496773e-11!GO:0051186;cofactor metabolic process;3.07055002484387e-11!GO:0044453;nuclear membrane part;3.32610054007225e-11!GO:0016607;nuclear speck;4.52017577688306e-11!GO:0003743;translation initiation factor activity;5.32069245584131e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.39614502002611e-11!GO:0005746;mitochondrial respiratory chain;6.26355422097492e-11!GO:0051726;regulation of cell cycle;6.27977928626134e-11!GO:0000074;regulation of progression through cell cycle;8.07221735416837e-11!GO:0006399;tRNA metabolic process;1.23198887660591e-10!GO:0051301;cell division;1.25998696446412e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.42995487668177e-10!GO:0006260;DNA replication;1.47536656527514e-10!GO:0000279;M phase;2.16039971899483e-10!GO:0006732;coenzyme metabolic process;2.7886163306282e-10!GO:0000785;chromatin;3.84461755888838e-10!GO:0005789;endoplasmic reticulum membrane;4.59620108934192e-10!GO:0050136;NADH dehydrogenase (quinone) activity;4.69522098955914e-10!GO:0003954;NADH dehydrogenase activity;4.69522098955914e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.69522098955914e-10!GO:0006915;apoptosis;4.72257502314233e-10!GO:0008026;ATP-dependent helicase activity;4.96119048281909e-10!GO:0050794;regulation of cellular process;4.96901646531267e-10!GO:0012501;programmed cell death;5.24962908881926e-10!GO:0008639;small protein conjugating enzyme activity;5.31312328426294e-10!GO:0008565;protein transporter activity;5.80778707899004e-10!GO:0016072;rRNA metabolic process;7.25208824806159e-10!GO:0006364;rRNA processing;8.59732489908347e-10!GO:0006461;protein complex assembly;9.20566956185971e-10!GO:0004842;ubiquitin-protein ligase activity;9.48911345423893e-10!GO:0019787;small conjugating protein ligase activity;2.5573701925583e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.08669221409563e-09!GO:0006333;chromatin assembly or disassembly;4.16231906851157e-09!GO:0017038;protein import;4.28472309545033e-09!GO:0005643;nuclear pore;4.33840100295626e-09!GO:0008219;cell death;4.33840100295626e-09!GO:0016265;death;4.33840100295626e-09!GO:0016564;transcription repressor activity;6.79982268105508e-09!GO:0065004;protein-DNA complex assembly;6.83040809852517e-09!GO:0042775;organelle ATP synthesis coupled electron transport;1.17047538316393e-08!GO:0042773;ATP synthesis coupled electron transport;1.17047538316393e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.32569920039365e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.32569920039365e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.32569920039365e-08!GO:0005768;endosome;1.69257338788147e-08!GO:0043038;amino acid activation;2.20737097286977e-08!GO:0006418;tRNA aminoacylation for protein translation;2.20737097286977e-08!GO:0043039;tRNA aminoacylation;2.20737097286977e-08!GO:0030964;NADH dehydrogenase complex (quinone);2.21893592746491e-08!GO:0045271;respiratory chain complex I;2.21893592746491e-08!GO:0005747;mitochondrial respiratory chain complex I;2.21893592746491e-08!GO:0006403;RNA localization;2.60383006550212e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.67466102795248e-08!GO:0050657;nucleic acid transport;2.76330425755963e-08!GO:0051236;establishment of RNA localization;2.76330425755963e-08!GO:0050658;RNA transport;2.76330425755963e-08!GO:0005793;ER-Golgi intermediate compartment;2.8460346196644e-08!GO:0009056;catabolic process;3.13665608276243e-08!GO:0019222;regulation of metabolic process;3.73866424063959e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.63231494895258e-08!GO:0031324;negative regulation of cellular metabolic process;4.69990261051423e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.81321816584216e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.96304251183554e-08!GO:0016779;nucleotidyltransferase activity;5.03694046369436e-08!GO:0016568;chromatin modification;5.80552053129489e-08!GO:0016881;acid-amino acid ligase activity;6.19471998804295e-08!GO:0015630;microtubule cytoskeleton;6.21254995327445e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.64760077682892e-08!GO:0005667;transcription factor complex;8.06596662763626e-08!GO:0065002;intracellular protein transport across a membrane;8.25642101933732e-08!GO:0006888;ER to Golgi vesicle-mediated transport;8.76273270472462e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.40307354586063e-07!GO:0019829;cation-transporting ATPase activity;1.77927925647621e-07!GO:0048523;negative regulation of cellular process;1.93049260698471e-07!GO:0016740;transferase activity;2.22861050828705e-07!GO:0015986;ATP synthesis coupled proton transport;2.41374723862173e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.41374723862173e-07!GO:0006163;purine nucleotide metabolic process;2.61126572251886e-07!GO:0046930;pore complex;2.83613471799773e-07!GO:0009259;ribonucleotide metabolic process;3.53422537572845e-07!GO:0048475;coated membrane;4.88042115350206e-07!GO:0030117;membrane coat;4.88042115350206e-07!GO:0009892;negative regulation of metabolic process;4.94457042013276e-07!GO:0005813;centrosome;5.72963268121821e-07!GO:0016787;hydrolase activity;6.11102269137605e-07!GO:0006164;purine nucleotide biosynthetic process;6.31322602097985e-07!GO:0030120;vesicle coat;6.78177676175599e-07!GO:0030662;coated vesicle membrane;6.78177676175599e-07!GO:0000245;spliceosome assembly;6.99123241147775e-07!GO:0032446;protein modification by small protein conjugation;8.016395836978e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.06777921687636e-07!GO:0009150;purine ribonucleotide metabolic process;8.54449866754628e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.07461552682032e-07!GO:0051188;cofactor biosynthetic process;9.58914548084749e-07!GO:0016567;protein ubiquitination;1.06271504565133e-06!GO:0051170;nuclear import;1.09566053693789e-06!GO:0051028;mRNA transport;1.12386949703504e-06!GO:0009055;electron carrier activity;1.41267780837235e-06!GO:0006793;phosphorus metabolic process;1.5450226826085e-06!GO:0006796;phosphate metabolic process;1.5450226826085e-06!GO:0009260;ribonucleotide biosynthetic process;1.63912294771081e-06!GO:0016563;transcription activator activity;1.64176147251394e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.64176147251394e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.64176147251394e-06!GO:0050789;regulation of biological process;1.77827122704678e-06!GO:0005815;microtubule organizing center;1.78957568955691e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.83879163597067e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.87527705359713e-06!GO:0006261;DNA-dependent DNA replication;1.98075951042158e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.98137727964507e-06!GO:0009060;aerobic respiration;2.01641757905527e-06!GO:0006606;protein import into nucleus;2.10385059596761e-06!GO:0043566;structure-specific DNA binding;2.10435526778065e-06!GO:0003714;transcription corepressor activity;2.30684914990481e-06!GO:0003724;RNA helicase activity;2.60820661706334e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.61651283777553e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.61651283777553e-06!GO:0005773;vacuole;2.61651283777553e-06!GO:0016481;negative regulation of transcription;2.68389371410627e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.79496754624963e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.87424951144523e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.87424951144523e-06!GO:0009141;nucleoside triphosphate metabolic process;3.09401642088933e-06!GO:0006754;ATP biosynthetic process;3.1452289354117e-06!GO:0006753;nucleoside phosphate metabolic process;3.1452289354117e-06!GO:0051246;regulation of protein metabolic process;3.18048411288279e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.69048047983126e-06!GO:0042981;regulation of apoptosis;4.10432251084851e-06!GO:0009108;coenzyme biosynthetic process;4.26568679669693e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.4627208340592e-06!GO:0003713;transcription coactivator activity;4.53975356399828e-06!GO:0046034;ATP metabolic process;4.93440209097016e-06!GO:0005819;spindle;5.11334964234656e-06!GO:0006752;group transfer coenzyme metabolic process;5.57956770934583e-06!GO:0006613;cotranslational protein targeting to membrane;6.36869528796482e-06!GO:0000151;ubiquitin ligase complex;6.41013176933146e-06!GO:0048519;negative regulation of biological process;6.41013176933146e-06!GO:0043067;regulation of programmed cell death;6.60129227941199e-06!GO:0006402;mRNA catabolic process;7.31327858771297e-06!GO:0031323;regulation of cellular metabolic process;7.66973197830195e-06!GO:0003697;single-stranded DNA binding;7.74398796362371e-06!GO:0005798;Golgi-associated vesicle;8.70885795334769e-06!GO:0045333;cellular respiration;9.13907971031947e-06!GO:0005788;endoplasmic reticulum lumen;9.28170633617885e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.0468858704411e-05!GO:0045786;negative regulation of progression through cell cycle;1.061648215074e-05!GO:0009117;nucleotide metabolic process;1.13443568511176e-05!GO:0051427;hormone receptor binding;1.13594867425938e-05!GO:0003682;chromatin binding;1.18380579365488e-05!GO:0043623;cellular protein complex assembly;1.18612889499754e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.19128688351848e-05!GO:0031497;chromatin assembly;1.21677567691273e-05!GO:0044440;endosomal part;1.23632669808371e-05!GO:0010008;endosome membrane;1.23632669808371e-05!GO:0051329;interphase of mitotic cell cycle;1.53234431765546e-05!GO:0007051;spindle organization and biogenesis;1.6509586193027e-05!GO:0006334;nucleosome assembly;1.7591916225216e-05!GO:0044431;Golgi apparatus part;1.78595937624145e-05!GO:0016310;phosphorylation;1.8911564523877e-05!GO:0035257;nuclear hormone receptor binding;2.06645521600439e-05!GO:0008654;phospholipid biosynthetic process;2.13903744881275e-05!GO:0045259;proton-transporting ATP synthase complex;2.41634342884933e-05!GO:0051168;nuclear export;2.53284919037407e-05!GO:0006350;transcription;2.53726662246015e-05!GO:0007005;mitochondrion organization and biogenesis;3.02143269240902e-05!GO:0005770;late endosome;3.11634423762721e-05!GO:0016853;isomerase activity;3.27955165229096e-05!GO:0006401;RNA catabolic process;3.62893004154557e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.36952958408609e-05!GO:0031988;membrane-bound vesicle;5.99628031702969e-05!GO:0016363;nuclear matrix;6.13923710965736e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;6.16087202351939e-05!GO:0000323;lytic vacuole;6.77540225480247e-05!GO:0005764;lysosome;6.77540225480247e-05!GO:0003729;mRNA binding;6.8505865292166e-05!GO:0042802;identical protein binding;7.03082676716692e-05!GO:0031982;vesicle;7.40672681945398e-05!GO:0016023;cytoplasmic membrane-bound vesicle;7.59121642835153e-05!GO:0005525;GTP binding;7.62125648535063e-05!GO:0051052;regulation of DNA metabolic process;8.76619362715443e-05!GO:0031410;cytoplasmic vesicle;9.69753160399438e-05!GO:0051789;response to protein stimulus;9.86073210415765e-05!GO:0006986;response to unfolded protein;9.86073210415765e-05!GO:0003899;DNA-directed RNA polymerase activity;9.86073210415765e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000100614274324291!GO:0004298;threonine endopeptidase activity;0.000107502600093493!GO:0005657;replication fork;0.000133080766208488!GO:0005048;signal sequence binding;0.000142527376542021!GO:0008186;RNA-dependent ATPase activity;0.000146617526040895!GO:0000775;chromosome, pericentric region;0.000147783105179116!GO:0003924;GTPase activity;0.000150876933505902!GO:0019899;enzyme binding;0.000155096241798339!GO:0007264;small GTPase mediated signal transduction;0.000158376893501607!GO:0031072;heat shock protein binding;0.000165507046144577!GO:0051325;interphase;0.00017071951436562!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000172976362777396!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000177823035529176!GO:0006916;anti-apoptosis;0.000179759041205459!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000188559900425227!GO:0031252;leading edge;0.00021078832398954!GO:0006302;double-strand break repair;0.000213228156315513!GO:0000314;organellar small ribosomal subunit;0.000220871144263684!GO:0005763;mitochondrial small ribosomal subunit;0.000220871144263684!GO:0043021;ribonucleoprotein binding;0.000238134957654391!GO:0016859;cis-trans isomerase activity;0.000261261701858386!GO:0006099;tricarboxylic acid cycle;0.000267202058448554!GO:0046356;acetyl-CoA catabolic process;0.000267202058448554!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000280587669994878!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000283203956411137!GO:0044452;nucleolar part;0.000289554417424594!GO:0003690;double-stranded DNA binding;0.000291122219409057!GO:0010468;regulation of gene expression;0.000296074959175469!GO:0043069;negative regulation of programmed cell death;0.00030926047876889!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000327060189502728!GO:0045454;cell redox homeostasis;0.00032844755584113!GO:0005769;early endosome;0.000338762908825549!GO:0043066;negative regulation of apoptosis;0.000357975236934355!GO:0000139;Golgi membrane;0.000358735887357851!GO:0006612;protein targeting to membrane;0.000358735887357851!GO:0009109;coenzyme catabolic process;0.00036309406392664!GO:0045892;negative regulation of transcription, DNA-dependent;0.000365166974374895!GO:0006084;acetyl-CoA metabolic process;0.000366483249456242!GO:0046983;protein dimerization activity;0.000375520419409749!GO:0006352;transcription initiation;0.000396502945878733!GO:0004004;ATP-dependent RNA helicase activity;0.000431588935014!GO:0007010;cytoskeleton organization and biogenesis;0.000460168800761562!GO:0030036;actin cytoskeleton organization and biogenesis;0.000470380331581339!GO:0016044;membrane organization and biogenesis;0.000592207829730304!GO:0007052;mitotic spindle organization and biogenesis;0.000644946367213025!GO:0032561;guanyl ribonucleotide binding;0.000715312253928385!GO:0019001;guanyl nucleotide binding;0.000715312253928385!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000742506524303023!GO:0004674;protein serine/threonine kinase activity;0.000759041880659781!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000768776311571304!GO:0015399;primary active transmembrane transporter activity;0.000768776311571304!GO:0065009;regulation of a molecular function;0.000793044854310213!GO:0008168;methyltransferase activity;0.000812234710478746!GO:0006650;glycerophospholipid metabolic process;0.000812234710478746!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000814466413944082!GO:0003702;RNA polymerase II transcription factor activity;0.000824195148260982!GO:0043681;protein import into mitochondrion;0.000859737803283064!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000871079815486563!GO:0007243;protein kinase cascade;0.000879344687071679!GO:0051187;cofactor catabolic process;0.000881809427722056!GO:0048471;perinuclear region of cytoplasm;0.000910891959232433!GO:0008033;tRNA processing;0.00091448083001805!GO:0005762;mitochondrial large ribosomal subunit;0.00091448083001805!GO:0000315;organellar large ribosomal subunit;0.00091448083001805!GO:0016741;transferase activity, transferring one-carbon groups;0.000958162162867798!GO:0000075;cell cycle checkpoint;0.000963740726320958!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000981980889641262!GO:0030176;integral to endoplasmic reticulum membrane;0.000982385323806644!GO:0046474;glycerophospholipid biosynthetic process;0.00106237178563112!GO:0051287;NAD binding;0.00107536482257852!GO:0051920;peroxiredoxin activity;0.0010809605469983!GO:0006891;intra-Golgi vesicle-mediated transport;0.00109687137322151!GO:0030867;rough endoplasmic reticulum membrane;0.00111667961382569!GO:0006520;amino acid metabolic process;0.00115203699714992!GO:0030658;transport vesicle membrane;0.00142724776110864!GO:0008234;cysteine-type peptidase activity;0.00146583757804767!GO:0045941;positive regulation of transcription;0.00152352058450405!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00157099771203704!GO:0000049;tRNA binding;0.00162848976649302!GO:0051252;regulation of RNA metabolic process;0.00166444054109931!GO:0030118;clathrin coat;0.00168860043754386!GO:0032774;RNA biosynthetic process;0.0017356818633249!GO:0008139;nuclear localization sequence binding;0.00181530137667772!GO:0046966;thyroid hormone receptor binding;0.00192821249345698!GO:0030029;actin filament-based process;0.001947020404532!GO:0006351;transcription, DNA-dependent;0.00203380649450375!GO:0033116;ER-Golgi intermediate compartment membrane;0.00212254905090385!GO:0030134;ER to Golgi transport vesicle;0.00214094008470753!GO:0048500;signal recognition particle;0.00214957480782383!GO:0065007;biological regulation;0.00222748917101453!GO:0045893;positive regulation of transcription, DNA-dependent;0.0022459356187022!GO:0006082;organic acid metabolic process;0.00229908045295094!GO:0009165;nucleotide biosynthetic process;0.00229908045295094!GO:0019752;carboxylic acid metabolic process;0.00230329978264208!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00235997885370847!GO:0005791;rough endoplasmic reticulum;0.00246001119151488!GO:0006275;regulation of DNA replication;0.00255661544749394!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0025610374824541!GO:0004527;exonuclease activity;0.00279753437739398!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00292678595702865!GO:0046489;phosphoinositide biosynthetic process;0.00293977944947705!GO:0030127;COPII vesicle coat;0.00298019879809285!GO:0012507;ER to Golgi transport vesicle membrane;0.00298019879809285!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00298019879809285!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00299278991637815!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00299278991637815!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00299278991637815!GO:0016251;general RNA polymerase II transcription factor activity;0.00309798305398801!GO:0008092;cytoskeletal protein binding;0.00318793964908752!GO:0043488;regulation of mRNA stability;0.0032475368318189!GO:0043487;regulation of RNA stability;0.0032475368318189!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00326137928183419!GO:0016197;endosome transport;0.00326868253618615!GO:0000776;kinetochore;0.00330788247128173!GO:0000786;nucleosome;0.00330788247128173!GO:0006383;transcription from RNA polymerase III promoter;0.00331252076686385!GO:0007569;cell aging;0.00332397119121721!GO:0030660;Golgi-associated vesicle membrane;0.00332794963485424!GO:0043492;ATPase activity, coupled to movement of substances;0.00334044286802549!GO:0006405;RNA export from nucleus;0.00371885125587594!GO:0006338;chromatin remodeling;0.00386673190647507!GO:0030384;phosphoinositide metabolic process;0.00387974062251246!GO:0032508;DNA duplex unwinding;0.00388289647353568!GO:0032392;DNA geometric change;0.00388289647353568!GO:0030119;AP-type membrane coat adaptor complex;0.00394360028599869!GO:0006414;translational elongation;0.00402119930923955!GO:0006626;protein targeting to mitochondrion;0.00402616828752194!GO:0005905;coated pit;0.00408000057777595!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00429634348878491!GO:0045449;regulation of transcription;0.00434122867781033!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0043993190249779!GO:0006268;DNA unwinding during replication;0.00446437584848539!GO:0005874;microtubule;0.00451202941868957!GO:0016584;nucleosome positioning;0.00458180452230487!GO:0000086;G2/M transition of mitotic cell cycle;0.00459523097996999!GO:0007265;Ras protein signal transduction;0.00467667649325338!GO:0001726;ruffle;0.00468061458170957!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00478202599529528!GO:0045047;protein targeting to ER;0.00478202599529528!GO:0030133;transport vesicle;0.0050216814692245!GO:0045045;secretory pathway;0.00503386596175034!GO:0048487;beta-tubulin binding;0.00503695669685606!GO:0008312;7S RNA binding;0.00505765950888252!GO:0030521;androgen receptor signaling pathway;0.00515459574208895!GO:0005637;nuclear inner membrane;0.00517179213145256!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.005193663604176!GO:0030131;clathrin adaptor complex;0.00520690422924095!GO:0046467;membrane lipid biosynthetic process;0.00523096045240489!GO:0003711;transcription elongation regulator activity;0.00527923199753118!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00529495990368259!GO:0048522;positive regulation of cellular process;0.00546950710109826!GO:0015631;tubulin binding;0.00547527571984725!GO:0005885;Arp2/3 protein complex;0.0059140827588514!GO:0016491;oxidoreductase activity;0.00604191025353878!GO:0008022;protein C-terminus binding;0.00654384298880547!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00666974699747884!GO:0035258;steroid hormone receptor binding;0.00739196730376726!GO:0005684;U2-dependent spliceosome;0.00740231946112971!GO:0007088;regulation of mitosis;0.00777922931856904!GO:0000922;spindle pole;0.00781025777320451!GO:0015992;proton transport;0.00815580204269784!GO:0000059;protein import into nucleus, docking;0.00817620911550453!GO:0006611;protein export from nucleus;0.00822479290872771!GO:0019783;small conjugating protein-specific protease activity;0.00841043460639602!GO:0030132;clathrin coat of coated pit;0.00854070407088964!GO:0030659;cytoplasmic vesicle membrane;0.00863413622560992!GO:0043022;ribosome binding;0.00904728537699753!GO:0008094;DNA-dependent ATPase activity;0.00916132729414546!GO:0006818;hydrogen transport;0.00940855150124778!GO:0006376;mRNA splice site selection;0.0100468566032921!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0100468566032921!GO:0001889;liver development;0.010145888935312!GO:0006643;membrane lipid metabolic process;0.0103812045630414!GO:0051087;chaperone binding;0.0103883835931358!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0104950306755103!GO:0043624;cellular protein complex disassembly;0.0105028289466967!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0105816104444046!GO:0030663;COPI coated vesicle membrane;0.0108489728986545!GO:0030126;COPI vesicle coat;0.0108489728986545!GO:0003678;DNA helicase activity;0.0109697678064528!GO:0005669;transcription factor TFIID complex;0.0111921767579648!GO:0042393;histone binding;0.0112628600545784!GO:0004843;ubiquitin-specific protease activity;0.0112693899781267!GO:0006892;post-Golgi vesicle-mediated transport;0.0113541837155436!GO:0031625;ubiquitin protein ligase binding;0.0113541837155436!GO:0051716;cellular response to stimulus;0.0114606995399687!GO:0040029;regulation of gene expression, epigenetic;0.011480087053439!GO:0006310;DNA recombination;0.0116892915969465!GO:0016272;prefoldin complex;0.0118052249892482!GO:0031968;organelle outer membrane;0.0119211065877302!GO:0008276;protein methyltransferase activity;0.0119211065877302!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0124854662192758!GO:0006984;ER-nuclear signaling pathway;0.0127555612523234!GO:0004518;nuclease activity;0.0127606697151595!GO:0004576;oligosaccharyl transferase activity;0.0128201996686749!GO:0003684;damaged DNA binding;0.0128598261117644!GO:0016408;C-acyltransferase activity;0.013270360512463!GO:0022890;inorganic cation transmembrane transporter activity;0.0135580403540066!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.013749036289142!GO:0030880;RNA polymerase complex;0.0138639187608776!GO:0046488;phosphatidylinositol metabolic process;0.0139287684272083!GO:0007059;chromosome segregation;0.0139455305025288!GO:0019843;rRNA binding;0.0140689067396303!GO:0008632;apoptotic program;0.0145983743646749!GO:0006284;base-excision repair;0.0145983743646749!GO:0004221;ubiquitin thiolesterase activity;0.0145983743646749!GO:0044433;cytoplasmic vesicle part;0.0145983743646749!GO:0019867;outer membrane;0.0146605309669541!GO:0003746;translation elongation factor activity;0.0146605309669541!GO:0032984;macromolecular complex disassembly;0.0147509237794669!GO:0030137;COPI-coated vesicle;0.0148714942596918!GO:0031124;mRNA 3'-end processing;0.0149509572162855!GO:0006595;polyamine metabolic process;0.0154666013579518!GO:0007017;microtubule-based process;0.0155920078967787!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0159390478967759!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0159390478967759!GO:0006367;transcription initiation from RNA polymerase II promoter;0.015962877311333!GO:0008610;lipid biosynthetic process;0.0165307877680089!GO:0005938;cell cortex;0.0165446544538836!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0172408265683858!GO:0006644;phospholipid metabolic process;0.0174337229983851!GO:0008250;oligosaccharyl transferase complex;0.0175543716675003!GO:0006767;water-soluble vitamin metabolic process;0.0184117258922196!GO:0005083;small GTPase regulator activity;0.0184117258922196!GO:0000725;recombinational repair;0.0184305686984028!GO:0000724;double-strand break repair via homologous recombination;0.0184305686984028!GO:0005876;spindle microtubule;0.0193994724522387!GO:0012506;vesicle membrane;0.0194824127609372!GO:0006740;NADPH regeneration;0.0194824127609372!GO:0006098;pentose-phosphate shunt;0.0194824127609372!GO:0005832;chaperonin-containing T-complex;0.0200601299430942!GO:0008097;5S rRNA binding;0.0200601299430942!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0202799911855826!GO:0007266;Rho protein signal transduction;0.0202801612619799!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.020291247452145!GO:0000096;sulfur amino acid metabolic process;0.0203333685374446!GO:0005869;dynactin complex;0.0206688522461944!GO:0009451;RNA modification;0.0208171708177595!GO:0031529;ruffle organization and biogenesis;0.0214857288417804!GO:0017166;vinculin binding;0.0217616514938763!GO:0006897;endocytosis;0.0217616514938763!GO:0010324;membrane invagination;0.0217616514938763!GO:0043433;negative regulation of transcription factor activity;0.022038318780866!GO:0000082;G1/S transition of mitotic cell cycle;0.0220667883047402!GO:0050662;coenzyme binding;0.0221242003004466!GO:0005774;vacuolar membrane;0.0221242003004466!GO:0006607;NLS-bearing substrate import into nucleus;0.0221534337160788!GO:0051338;regulation of transferase activity;0.0221852569142316!GO:0033673;negative regulation of kinase activity;0.0223933397646539!GO:0006469;negative regulation of protein kinase activity;0.0223933397646539!GO:0051059;NF-kappaB binding;0.0227238579693021!GO:0016790;thiolester hydrolase activity;0.0227540237899233!GO:0007006;mitochondrial membrane organization and biogenesis;0.0232211167887297!GO:0007093;mitotic cell cycle checkpoint;0.0234251469008281!GO:0016791;phosphoric monoester hydrolase activity;0.0236084128477964!GO:0006839;mitochondrial transport;0.0236459946306487!GO:0051053;negative regulation of DNA metabolic process;0.0239030076926115!GO:0030145;manganese ion binding;0.0239257880633286!GO:0006979;response to oxidative stress;0.0243701034814222!GO:0030125;clathrin vesicle coat;0.0246552480054625!GO:0030665;clathrin coated vesicle membrane;0.0246552480054625!GO:0043596;nuclear replication fork;0.0250083323560893!GO:0016301;kinase activity;0.0251580871065509!GO:0031902;late endosome membrane;0.0251804343764786!GO:0050790;regulation of catalytic activity;0.0252814480597406!GO:0042770;DNA damage response, signal transduction;0.0259885431168221!GO:0001701;in utero embryonic development;0.0269012765279409!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0273259135118417!GO:0000428;DNA-directed RNA polymerase complex;0.0273259135118417!GO:0043241;protein complex disassembly;0.0273259135118417!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0273259135118417!GO:0015002;heme-copper terminal oxidase activity;0.0273259135118417!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0273259135118417!GO:0004129;cytochrome-c oxidase activity;0.0273259135118417!GO:0048037;cofactor binding;0.027491615854321!GO:0045947;negative regulation of translational initiation;0.0276391307743689!GO:0043414;biopolymer methylation;0.0277118087124162!GO:0005741;mitochondrial outer membrane;0.0292235780086724!GO:0032259;methylation;0.0293344634627178!GO:0005784;translocon complex;0.0294101076764433!GO:0006519;amino acid and derivative metabolic process;0.0299298824640329!GO:0006417;regulation of translation;0.0299862563836938!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0304651367066773!GO:0043549;regulation of kinase activity;0.0309068734000434!GO:0032507;maintenance of cellular protein localization;0.0309193289373818!GO:0006144;purine base metabolic process;0.0322051517099387!GO:0006518;peptide metabolic process;0.0328439432603463!GO:0009116;nucleoside metabolic process;0.0330034498498233!GO:0008629;induction of apoptosis by intracellular signals;0.0330176638664064!GO:0003677;DNA binding;0.0331608868205333!GO:0030518;steroid hormone receptor signaling pathway;0.0337208040975848!GO:0003756;protein disulfide isomerase activity;0.0337781292955623!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0337781292955623!GO:0046483;heterocycle metabolic process;0.0339152662714468!GO:0008047;enzyme activator activity;0.0340525633946831!GO:0009112;nucleobase metabolic process;0.0344442314844119!GO:0004680;casein kinase activity;0.0351792026696382!GO:0006497;protein amino acid lipidation;0.0355907300666948!GO:0006739;NADP metabolic process;0.0355907300666948!GO:0000123;histone acetyltransferase complex;0.0356012338401902!GO:0006354;RNA elongation;0.0364753256992322!GO:0006355;regulation of transcription, DNA-dependent;0.036776951353252!GO:0016311;dephosphorylation;0.0368709318837425!GO:0050681;androgen receptor binding;0.03746504895186!GO:0006506;GPI anchor biosynthetic process;0.03746504895186!GO:0042158;lipoprotein biosynthetic process;0.03746504895186!GO:0042147;retrograde transport, endosome to Golgi;0.0376437924076846!GO:0000339;RNA cap binding;0.0387157405399848!GO:0005758;mitochondrial intermembrane space;0.038931079660695!GO:0035267;NuA4 histone acetyltransferase complex;0.038967897777801!GO:0009225;nucleotide-sugar metabolic process;0.0391399100632769!GO:0004470;malic enzyme activity;0.0392326451345219!GO:0008408;3'-5' exonuclease activity;0.0393804531104275!GO:0006769;nicotinamide metabolic process;0.0395542101070543!GO:0030031;cell projection biogenesis;0.0398227403816361!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0401927479562089!GO:0043189;H4/H2A histone acetyltransferase complex;0.0402903958406757!GO:0018196;peptidyl-asparagine modification;0.0414517799555858!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0414517799555858!GO:0031901;early endosome membrane;0.0415987399705755!GO:0008538;proteasome activator activity;0.0425311706796753!GO:0006301;postreplication repair;0.0425311706796753!GO:0004177;aminopeptidase activity;0.0425311706796753!GO:0007050;cell cycle arrest;0.0428571810755912!GO:0051101;regulation of DNA binding;0.0428618297690183!GO:0007030;Golgi organization and biogenesis;0.042900924316008!GO:0030140;trans-Golgi network transport vesicle;0.0430685383873064!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0438516199929175!GO:0015980;energy derivation by oxidation of organic compounds;0.0441388189219041!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0444591447415141!GO:0033554;cellular response to stress;0.0444591447415141!GO:0045502;dynein binding;0.0445501487458019!GO:0009893;positive regulation of metabolic process;0.0445501487458019!GO:0031123;RNA 3'-end processing;0.0445962236296804!GO:0006400;tRNA modification;0.0447687445620219!GO:0007033;vacuole organization and biogenesis;0.0448964304084851!GO:0044437;vacuolar part;0.0449391670969735!GO:0030968;unfolded protein response;0.0456562483189804!GO:0030027;lamellipodium;0.0464780924618076!GO:0006730;one-carbon compound metabolic process;0.046629939793668!GO:0008286;insulin receptor signaling pathway;0.046629939793668!GO:0006596;polyamine biosynthetic process;0.0471360441061881!GO:0016126;sterol biosynthetic process;0.0471360441061881!GO:0006672;ceramide metabolic process;0.0474630584450567!GO:0051348;negative regulation of transferase activity;0.0480623004289447!GO:0000118;histone deacetylase complex;0.0481295507268965!GO:0000178;exosome (RNase complex);0.0495875568087513!GO:0006950;response to stress;0.0498566560613719!GO:0050811;GABA receptor binding;0.0499626653896485 | |||
|sample_id=10469 | |sample_id=10469 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=rectum | |sample_tissue=rectum | ||
|top_motifs=HOX{A6,A7,B6,B7}:2.84173573174;ZEB1:2.11286707943;VSX1,2:2.10068548197;SNAI1..3:2.09699763821;FOXQ1:1.67244578191;PDX1:1.4242782586;HNF4A_NR2F1,2:1.36349017199;LEF1_TCF7_TCF7L1,2:1.33858267847;HNF1A:1.32421891781;FOXD3:1.32142982413;SP1:1.1940150962;bHLH_family:1.17452177804;FOXN1:1.17068450903;RORA:1.15765880961;ATF4:1.11210506202;ZNF148:1.10509179049;XCPE1{core}:0.899427951448;TEAD1:0.844657031166;NFY{A,B,C}:0.837407636142;TLX2:0.814904540538;ATF6:0.78853776275;RBPJ:0.781040300481;ONECUT1,2:0.741142978917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.64478787862;TEF:0.637953306418;TFDP1:0.626828335868;MYOD1:0.60020284128;HLF:0.583886830623;POU2F1..3:0.567543294204;PAX8:0.557155555241;MYB:0.543924890402;SREBF1,2:0.542387920761;TBP:0.535005396099;MED-1{core}:0.510507935673;POU6F1:0.507830537486;FOX{F1,F2,J1}:0.505940901066;FOXM1:0.483177265363;PITX1..3:0.442525851013;E2F1..5:0.440336827913;TFAP2{A,C}:0.438547503373;LMO2:0.433993830932;ATF5_CREB3:0.427498757791;ELK1,4_GABP{A,B1}:0.404592292726;SOX17:0.386737908275;CRX:0.38371066397;CDX1,2,4:0.368804420226;HIF1A:0.365875147403;EN1,2:0.323642736655;GATA6:0.307722993304;MTF1:0.301686172891;FOX{D1,D2}:0.300867770242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.293646852501;IRF7:0.290404625004;FOS_FOS{B,L1}_JUN{B,D}:0.288614569095;HOXA9_MEIS1:0.287555304899;NANOG:0.255797349901;AHR_ARNT_ARNT2:0.252730004214;NKX2-1,4:0.246710159278;TBX4,5:0.228469676999;RFX2..5_RFXANK_RFXAP:0.226591400718;POU5F1:0.216128084509;FOX{I1,J2}:0.21551125775;NKX6-1,2:0.210211622423;NFE2:0.188765848829;ZNF384:0.183249851148;ZNF143:0.145105222089;T:0.14003266951;SOX5:0.126547848167;CUX2:0.120792871282;PAX4:0.114151120895;PAX2:0.10042793388;NKX3-2:0.0952769791242;MAZ:0.0792429592608;EP300:0.0544687474882;SOX{8,9,10}:0.0503528919821;ARID5B:0.021859815038;OCT4_SOX2{dimer}:0.0213406944303;CEBPA,B_DDIT3:0.0156857801536;ZIC1..3:0.0140038005082;ELF1,2,4:0.00396588966964;ZFP161:0.00190662423152;JUN:-0.0210999545453;FOXP1:-0.0313563223807;NKX2-3_NKX2-5:-0.0317240416943;NFIX:-0.0328546980492;CDC5L:-0.0335321019683;FOSL2:-0.0368325730532;NR6A1:-0.0383533199682;HES1:-0.0595612059647;NR3C1:-0.0634304484808;ATF2:-0.0675570787233;RFX1:-0.0686535500391;DBP:-0.0768836641019;PRRX1,2:-0.0793367923399;TFAP2B:-0.0827619218672;SOX2:-0.0887649802256;ZBTB16:-0.0894443868286;PATZ1:-0.0913427843562;TP53:-0.106731870425;HMGA1,2:-0.113568573852;HSF1,2:-0.118533620962;BACH2:-0.128464803501;SRF:-0.130538058266;NFKB1_REL_RELA:-0.131077951036;PAX1,9:-0.13556426838;PBX1:-0.148165661755;PAX3,7:-0.157391933382;STAT5{A,B}:-0.160074415586;ADNP_IRX_SIX_ZHX:-0.168145187483;MEF2{A,B,C,D}:-0.179611225489;IRF1,2:-0.197677193669;NRF1:-0.199174429558;POU3F1..4:-0.201180259888;HBP1_HMGB_SSRP1_UBTF:-0.204962126079;AIRE:-0.206348138494;CREB1:-0.211853309181;STAT2,4,6:-0.229351873241;TFCP2:-0.261357126043;ESRRA:-0.280407588809;HAND1,2:-0.281177121891;FOXL1:-0.296770280736;PPARG:-0.307655661951;ALX4:-0.309572156559;GLI1..3:-0.33992438045;BREu{core}:-0.347568200756;RREB1:-0.348497754311;EVI1:-0.35879746129;IKZF1:-0.360532229364;ESR1:-0.372051780234;XBP1:-0.374931321446;DMAP1_NCOR{1,2}_SMARC:-0.378049326741;NR5A1,2:-0.38010604498;IKZF2:-0.392433979254;NHLH1,2:-0.397799696104;GCM1,2:-0.411049981522;GTF2A1,2:-0.41219139169;MYBL2:-0.417661717057;MAFB:-0.418392862201;NFE2L2:-0.427093914308;HOX{A5,B5}:-0.430643973256;GTF2I:-0.430659387651;MTE{core}:-0.448509362687;EGR1..3:-0.463261298106;FOXA2:-0.467319196819;SPIB:-0.46874656409;EBF1:-0.481466972642;SPI1:-0.518903546866;ETS1,2:-0.51975037973;GATA4:-0.538490841082;LHX3,4:-0.554392328805;TAL1_TCF{3,4,12}:-0.570798638061;POU1F1:-0.582636935565;MZF1:-0.588521214341;GFI1:-0.595404005525;KLF4:-0.610873532977;GFI1B:-0.624832667474;HOX{A4,D4}:-0.634365296326;BPTF:-0.643821157519;RUNX1..3:-0.697159077198;UFEwm:-0.702269619867;PRDM1:-0.767708391263;HIC1:-0.768611529852;YY1:-0.783591204052;FOXP3:-0.835538688895;MYFfamily:-0.854670103319;REST:-0.861190534366;ZNF423:-0.868610608787;GZF1:-0.887973395482;NFATC1..3:-0.914477482094;ZNF238:-0.935506450899;STAT1,3:-0.937765379875;TOPORS:-0.937895171579;TGIF1:-0.948400845039;TLX1..3_NFIC{dimer}:-0.951266375222;TFAP4:-0.952497672251;ZBTB6:-0.955191977713;PAX5:-1.01073863404;NFIL3:-1.0128160734;FOXO1,3,4:-1.11710468574;NFE2L1:-1.1274769873;AR:-1.14220284258;NR1H4:-1.20072368524;ALX1:-1.36807128906;PAX6:-1.41081805055;SPZ1:-1.5706723796;NKX2-2,8:-1.60561129465;SMAD1..7,9:-1.64579029455;RXRA_VDR{dimer}:-1.65528192485;RXR{A,B,G}:-1.77910535778;NANOG{mouse}:-1.85262296867;NKX3-1:-2.22124251362;HMX1:-2.25204661729 | |top_motifs=HOX{A6,A7,B6,B7}:2.84173573174;ZEB1:2.11286707943;VSX1,2:2.10068548197;SNAI1..3:2.09699763821;FOXQ1:1.67244578191;PDX1:1.4242782586;HNF4A_NR2F1,2:1.36349017199;LEF1_TCF7_TCF7L1,2:1.33858267847;HNF1A:1.32421891781;FOXD3:1.32142982413;SP1:1.1940150962;bHLH_family:1.17452177804;FOXN1:1.17068450903;RORA:1.15765880961;ATF4:1.11210506202;ZNF148:1.10509179049;XCPE1{core}:0.899427951448;TEAD1:0.844657031166;NFY{A,B,C}:0.837407636142;TLX2:0.814904540538;ATF6:0.78853776275;RBPJ:0.781040300481;ONECUT1,2:0.741142978917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.64478787862;TEF:0.637953306418;TFDP1:0.626828335868;MYOD1:0.60020284128;HLF:0.583886830623;POU2F1..3:0.567543294204;PAX8:0.557155555241;MYB:0.543924890402;SREBF1,2:0.542387920761;TBP:0.535005396099;MED-1{core}:0.510507935673;POU6F1:0.507830537486;FOX{F1,F2,J1}:0.505940901066;FOXM1:0.483177265363;PITX1..3:0.442525851013;E2F1..5:0.440336827913;TFAP2{A,C}:0.438547503373;LMO2:0.433993830932;ATF5_CREB3:0.427498757791;ELK1,4_GABP{A,B1}:0.404592292726;SOX17:0.386737908275;CRX:0.38371066397;CDX1,2,4:0.368804420226;HIF1A:0.365875147403;EN1,2:0.323642736655;GATA6:0.307722993304;MTF1:0.301686172891;FOX{D1,D2}:0.300867770242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.293646852501;IRF7:0.290404625004;FOS_FOS{B,L1}_JUN{B,D}:0.288614569095;HOXA9_MEIS1:0.287555304899;NANOG:0.255797349901;AHR_ARNT_ARNT2:0.252730004214;NKX2-1,4:0.246710159278;TBX4,5:0.228469676999;RFX2..5_RFXANK_RFXAP:0.226591400718;POU5F1:0.216128084509;FOX{I1,J2}:0.21551125775;NKX6-1,2:0.210211622423;NFE2:0.188765848829;ZNF384:0.183249851148;ZNF143:0.145105222089;T:0.14003266951;SOX5:0.126547848167;CUX2:0.120792871282;PAX4:0.114151120895;PAX2:0.10042793388;NKX3-2:0.0952769791242;MAZ:0.0792429592608;EP300:0.0544687474882;SOX{8,9,10}:0.0503528919821;ARID5B:0.021859815038;OCT4_SOX2{dimer}:0.0213406944303;CEBPA,B_DDIT3:0.0156857801536;ZIC1..3:0.0140038005082;ELF1,2,4:0.00396588966964;ZFP161:0.00190662423152;JUN:-0.0210999545453;FOXP1:-0.0313563223807;NKX2-3_NKX2-5:-0.0317240416943;NFIX:-0.0328546980492;CDC5L:-0.0335321019683;FOSL2:-0.0368325730532;NR6A1:-0.0383533199682;HES1:-0.0595612059647;NR3C1:-0.0634304484808;ATF2:-0.0675570787233;RFX1:-0.0686535500391;DBP:-0.0768836641019;PRRX1,2:-0.0793367923399;TFAP2B:-0.0827619218672;SOX2:-0.0887649802256;ZBTB16:-0.0894443868286;PATZ1:-0.0913427843562;TP53:-0.106731870425;HMGA1,2:-0.113568573852;HSF1,2:-0.118533620962;BACH2:-0.128464803501;SRF:-0.130538058266;NFKB1_REL_RELA:-0.131077951036;PAX1,9:-0.13556426838;PBX1:-0.148165661755;PAX3,7:-0.157391933382;STAT5{A,B}:-0.160074415586;ADNP_IRX_SIX_ZHX:-0.168145187483;MEF2{A,B,C,D}:-0.179611225489;IRF1,2:-0.197677193669;NRF1:-0.199174429558;POU3F1..4:-0.201180259888;HBP1_HMGB_SSRP1_UBTF:-0.204962126079;AIRE:-0.206348138494;CREB1:-0.211853309181;STAT2,4,6:-0.229351873241;TFCP2:-0.261357126043;ESRRA:-0.280407588809;HAND1,2:-0.281177121891;FOXL1:-0.296770280736;PPARG:-0.307655661951;ALX4:-0.309572156559;GLI1..3:-0.33992438045;BREu{core}:-0.347568200756;RREB1:-0.348497754311;EVI1:-0.35879746129;IKZF1:-0.360532229364;ESR1:-0.372051780234;XBP1:-0.374931321446;DMAP1_NCOR{1,2}_SMARC:-0.378049326741;NR5A1,2:-0.38010604498;IKZF2:-0.392433979254;NHLH1,2:-0.397799696104;GCM1,2:-0.411049981522;GTF2A1,2:-0.41219139169;MYBL2:-0.417661717057;MAFB:-0.418392862201;NFE2L2:-0.427093914308;HOX{A5,B5}:-0.430643973256;GTF2I:-0.430659387651;MTE{core}:-0.448509362687;EGR1..3:-0.463261298106;FOXA2:-0.467319196819;SPIB:-0.46874656409;EBF1:-0.481466972642;SPI1:-0.518903546866;ETS1,2:-0.51975037973;GATA4:-0.538490841082;LHX3,4:-0.554392328805;TAL1_TCF{3,4,12}:-0.570798638061;POU1F1:-0.582636935565;MZF1:-0.588521214341;GFI1:-0.595404005525;KLF4:-0.610873532977;GFI1B:-0.624832667474;HOX{A4,D4}:-0.634365296326;BPTF:-0.643821157519;RUNX1..3:-0.697159077198;UFEwm:-0.702269619867;PRDM1:-0.767708391263;HIC1:-0.768611529852;YY1:-0.783591204052;FOXP3:-0.835538688895;MYFfamily:-0.854670103319;REST:-0.861190534366;ZNF423:-0.868610608787;GZF1:-0.887973395482;NFATC1..3:-0.914477482094;ZNF238:-0.935506450899;STAT1,3:-0.937765379875;TOPORS:-0.937895171579;TGIF1:-0.948400845039;TLX1..3_NFIC{dimer}:-0.951266375222;TFAP4:-0.952497672251;ZBTB6:-0.955191977713;PAX5:-1.01073863404;NFIL3:-1.0128160734;FOXO1,3,4:-1.11710468574;NFE2L1:-1.1274769873;AR:-1.14220284258;NR1H4:-1.20072368524;ALX1:-1.36807128906;PAX6:-1.41081805055;SPZ1:-1.5706723796;NKX2-2,8:-1.60561129465;SMAD1..7,9:-1.64579029455;RXRA_VDR{dimer}:-1.65528192485;RXR{A,B,G}:-1.77910535778;NANOG{mouse}:-1.85262296867;NKX3-1:-2.22124251362;HMX1:-2.25204661729 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10469-106I1;search_select_hide=table117:FF:10469-106I1 | |||
}} | }} | ||
Latest revision as of 14:25, 3 June 2020
| Name: | rectal cancer cell line:TT1TKB |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11255 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11255
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11255
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.525 |
| 10 | 10 | 0.547 |
| 100 | 100 | 0.492 |
| 101 | 101 | 0.304 |
| 102 | 102 | 0.542 |
| 103 | 103 | 0.218 |
| 104 | 104 | 0.79 |
| 105 | 105 | 0.238 |
| 106 | 106 | 0.643 |
| 107 | 107 | 0.631 |
| 108 | 108 | 0.522 |
| 109 | 109 | 0.352 |
| 11 | 11 | 0.304 |
| 110 | 110 | 0.883 |
| 111 | 111 | 0.0219 |
| 112 | 112 | 0.0666 |
| 113 | 113 | 0.552 |
| 114 | 114 | 0.233 |
| 115 | 115 | 0.0207 |
| 116 | 116 | 0.111 |
| 117 | 117 | 0.208 |
| 118 | 118 | 0.813 |
| 119 | 119 | 0.171 |
| 12 | 12 | 0.63 |
| 120 | 120 | 0.272 |
| 121 | 121 | 0.761 |
| 122 | 122 | 0.259 |
| 123 | 123 | 0.0229 |
| 124 | 124 | 0.711 |
| 125 | 125 | 0.0092 |
| 126 | 126 | 0.243 |
| 127 | 127 | 0.784 |
| 128 | 128 | 0.0485 |
| 129 | 129 | 0.785 |
| 13 | 13 | 0.0385 |
| 130 | 130 | 0.198 |
| 131 | 131 | 0.0463 |
| 132 | 132 | 0.593 |
| 133 | 133 | 0.0539 |
| 134 | 134 | 0.0492 |
| 135 | 135 | 0.0229 |
| 136 | 136 | 0.0648 |
| 137 | 137 | 0.196 |
| 138 | 138 | 0.0722 |
| 139 | 139 | 0.0252 |
| 14 | 14 | 0.45 |
| 140 | 140 | 0.957 |
| 141 | 141 | 0.688 |
| 142 | 142 | 0.965 |
| 143 | 143 | 0.219 |
| 144 | 144 | 0.349 |
| 145 | 145 | 0.599 |
| 146 | 146 | 0.352 |
| 147 | 147 | 0.991 |
| 148 | 148 | 0.917 |
| 149 | 149 | 0.79 |
| 15 | 15 | 0.739 |
| 150 | 150 | 0.707 |
| 151 | 151 | 0.334 |
| 152 | 152 | 0.0357 |
| 153 | 153 | 0.475 |
| 154 | 154 | 0.1 |
| 155 | 155 | 0.981 |
| 156 | 156 | 0.213 |
| 157 | 157 | 0.827 |
| 158 | 158 | 0.174 |
| 159 | 159 | 0.635 |
| 16 | 16 | 0.457 |
| 160 | 160 | 0.681 |
| 161 | 161 | 0.756 |
| 162 | 162 | 0.791 |
| 163 | 163 | 0.698 |
| 164 | 164 | 0.377 |
| 165 | 165 | 0.586 |
| 166 | 166 | 0.823 |
| 167 | 167 | 0.402 |
| 168 | 168 | 0.674 |
| 169 | 169 | 0.763 |
| 17 | 17 | 0.461 |
| 18 | 18 | 0.221 |
| 19 | 19 | 0.143 |
| 2 | 2 | 0.333 |
| 20 | 20 | 0.226 |
| 21 | 21 | 0.728 |
| 22 | 22 | 0.826 |
| 23 | 23 | 0.796 |
| 24 | 24 | 0.891 |
| 25 | 25 | 0.598 |
| 26 | 26 | 0.736 |
| 27 | 27 | 0.297 |
| 28 | 28 | 0.63 |
| 29 | 29 | 0.786 |
| 3 | 3 | 0.153 |
| 30 | 30 | 0.219 |
| 31 | 31 | 0.434 |
| 32 | 32 | 0.003 |
| 33 | 33 | 0.576 |
| 34 | 34 | 0.611 |
| 35 | 35 | 0.112 |
| 36 | 36 | 0.557 |
| 37 | 37 | 0.403 |
| 38 | 38 | 0.95 |
| 39 | 39 | 0.605 |
| 4 | 4 | 0.154 |
| 40 | 40 | 0.519 |
| 41 | 41 | 0.269 |
| 42 | 42 | 0.698 |
| 43 | 43 | 0.488 |
| 44 | 44 | 0.645 |
| 45 | 45 | 0.257 |
| 46 | 46 | 0.257 |
| 47 | 47 | 0.961 |
| 48 | 48 | 0.846 |
| 49 | 49 | 0.464 |
| 5 | 5 | 0.336 |
| 50 | 50 | 0.269 |
| 51 | 51 | 0.654 |
| 52 | 52 | 0.772 |
| 53 | 53 | 0.705 |
| 54 | 54 | 0.857 |
| 55 | 55 | 0.486 |
| 56 | 56 | 0.88 |
| 57 | 57 | 0.575 |
| 58 | 58 | 0.969 |
| 59 | 59 | 0.262 |
| 6 | 6 | 0.294 |
| 60 | 60 | 0.804 |
| 61 | 61 | 0.555 |
| 62 | 62 | 0.272 |
| 63 | 63 | 0.521 |
| 64 | 64 | 0.515 |
| 65 | 65 | 0.362 |
| 66 | 66 | 6.03755e-4 |
| 67 | 67 | 0.333 |
| 68 | 68 | 0.0012 |
| 69 | 69 | 0.513 |
| 7 | 7 | 0.505 |
| 70 | 70 | 0.128 |
| 71 | 71 | 0.0371 |
| 72 | 72 | 0.967 |
| 73 | 73 | 0.239 |
| 74 | 74 | 0.0867 |
| 75 | 75 | 0.345 |
| 76 | 76 | 0.858 |
| 77 | 77 | 0.209 |
| 78 | 78 | 0.0609 |
| 79 | 79 | 0.0927 |
| 8 | 8 | 0.185 |
| 80 | 80 | 0.792 |
| 81 | 81 | 0.0164 |
| 82 | 82 | 0.00181 |
| 83 | 83 | 0.0319 |
| 84 | 84 | 0.582 |
| 85 | 85 | 0.176 |
| 86 | 86 | 0.329 |
| 87 | 87 | 0.552 |
| 88 | 88 | 0.817 |
| 89 | 89 | 0.124 |
| 9 | 9 | 0.214 |
| 90 | 90 | 0.38 |
| 91 | 91 | 0.0676 |
| 92 | 92 | 0.2 |
| 93 | 93 | 0.317 |
| 94 | 94 | 0.161 |
| 95 | 95 | 0.925 |
| 96 | 96 | 0.724 |
| 97 | 97 | 0.419 |
| 98 | 98 | 0.289 |
| 99 | 99 | 0.766 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11255
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101532 rectal cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3119 (gastrointestinal system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001052 (rectum)
0000160 (intestine)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101532 (rectal cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)
