FF:11516-119H4: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (25 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005247 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005247 | ||
|accession_numbers=CAGE;DRX008425;DRR009297;DRZ000722;DRZ002107;DRZ012072;DRZ013457 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036996;DRR041362;DRZ007004 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000152 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor1.CNhs11331.11516-119H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11516-119H4 | |id=FF:11516-119H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000152 | ||
|is_obsolete= | |||
|library_id=CNhs11331 | |||
|library_id_phase_based=2:CNhs11331 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11516 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GATCAG.11516 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11516 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GATCAG.11516 | |||
|name=Renal Cortical Epithelial Cells, donor1 | |name=Renal Cortical Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11331,LSID768,release014,COMPLETED | |profile_hcage=CNhs11331,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.00140912378605804,0.279301660537643,0.00446836233155246,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.161727153872444,0,-0.0475827203568788,0,0,0,0,0,0,0,0,0.363524511538169,0,0,0,0,0,0.0402179320231695,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0298811482800081,0.0897307164136921,0,0,0,0.0432737558014258,0.0451446663339164,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0.080863576936222,0,0,0,0,0,0,0,0,0,0,0,0.0894926266277285,0.161727153872444,0,0,-0.0549201943193819,-0.054637459809206,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,0.440743002370636,0.475410836643467,0,0,-0.10176203609056,0,0.161727153872444,0,0,0,0,0,0.161727153872444,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.0261705703607644,0,-0.0346072308806883,-0.0683442610773682,0,0,0,0,-0.10851351546188,0,0.327022175206662,0.0790069855490268,0.754707830249524,0.259422513982041,-0.055712496781182,0,0,0,-0.320413621557219,0.182733702013172,0,0,0.210051622836191,0.0391647886443843,0,0,-0.229317427679191,0,-0.160063179711325,0.176958140631309,0,-0.205605532003899,0,0,0,0,0,0,0,0,0,0,0,0.0233701101147855,-0.326988596678969,0,0,0.447901659000403,0,0.0484810793642843,0.161727153872444,0,0.290376793219563,0.359637453427254,-0.0365244477120477,0.422282621962238,0,0.145511931990489,0.00964068215691125,0.0374092181404423,0.297646846420589,0.131899811166504,0.322702418509723,0,-0.279802813620342,0.302925395443089,0.0836092700325085,0.407891005658084,0.0509360671267058,0.41514384120109,0.426979648142817,0,0.447901659000403,0,-0.19609804287649,0,0,-0.490114714476774,0.235803320833766,0.232671631798932,0.057853825354071,0.276923952661546,0.142095156278974,0.0413310484795515,0.111609291464345,0.0835003708205534,-0.165230255873914,0.0290474232008819,0,0.0739757281697212,0.095253268847026,-0.0104330418053165,0.248494689191171,0,0.134948517355958,-0.0683442610773682,0,0.200632112747123,0.241880353608063,0.279301660537643,0,0.0848857183047179,0,0,0,0,0,0.155783125523027,-0.260190482492523,-0.0711284076831007,0,0.116310175842433,0,0.203234280930724,0,0.212105648056489,0.169561679489573,0,0.292071822899794,0,0.145275904255066,-0.534934715075669,-0.00326354246655866,0.0902893326678327,-0.0584468268118252,-0.217787795716161,-0.00416177614526325,0.234690389651156,-0.170013885623288,0.00354872754538571,0.0736003213971564,0.0754551807025429,-0.21988180134225,-0.110452387260585,0.0298811482800081,0.120688971375491,0,-0.342270756931468,0,-0.492944626432603,0,0.268784207709424,-0.0925320924728375,0.0733947634788839,-0.562470067194968,0.000641161622956604,0.290020524609695,-0.416398496673595,0.221842561755744,0.219701670685345,0,0.66366294917613,0.22136535776574,0.0436129373938192,-0.0499232739921451,0.000661373589626847,0,-0.0487712544832548,0,0,-0.0722404229707621,-0.235476037764389,0,0.323325359579886,0.0544600349627337,0.202939683208341,0.331930585565469,0,0,0.62373752991287,0,0.56904574436094,1.02256676382127,0.102811095550127,0.514826878743117,-0.253326341486756,0.035453942694939,0.651798193927313,0,0,-0.177527765965176,0,-0.0477155403625025,0,0,0.436505285234676,0,0,0,0,-0.0622556453879595,0,0,0,0,0,0,0,-0.196491231920974,-0.193106176344004,0,0.447901659000403,0,0,0,0.447901659000403,0,0.00781316231381271,0,0,-0.457720636117926,0.0678648450975095,0.0387097381960239,0.080863576936222,0,0,0,0.156009038546904,-0.0415094082222796,0.161727153872444,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0.080863576936222,0,0.10399669681878,0.0103300266267205,0,0,0,-0.27695440160179,0,0,0,-0.0479032073369568,-0.29852654936943,0,0,0,0,0.203875780614414,0.0801452743256027,0,-0.231241224611325,0.33193469983731,0.992342881819287,0,0.279301660537643,0.0179545287477554,0,0,-0.466898577272308,0.157203269116273,0,0,0,0,0,0,0,0,0.0649871481378873,0,0,0,0,0,0,0,0,0,0,0,-0.160042687915354,-0.0922240566585104,0,0,0,0,0,0,0,0.115544807189918,-0.0856992856745191,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.094370308906865,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.072491391395847,0,0,0,0,0,0.279301660537643,0,0.00446836233155246,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.00140912378605804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0395365930678557,0,0.0550144428721805,0.046903074734624,0,0,-0.15176477569682,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161727153872444,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0.161727153872444,0,-0.0920328098005262,0,0,0,0,0,0,0.447432496133173,-0.0164906023367358,0.0823080610554706,0,0,0,0.20195649654733,0,0,0.191276940346355,0,0.0949497664535428,0,0,0,0,0,0,0,0,0.161727153872444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161727153872444,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.158646211443335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161727153872444,0,0,0,0,0,0,0,-0.126127206412752,0,0,0,0,0,0,0,0,0.161727153872444,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.271202381978069,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.0065649208656311,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.00748857209605615,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.727049023076337,0,0,0,0,0,0,0,0,0.66366294917613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.080863576936222,-0.0515922848975872,-0.054637459809206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0983820070776135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66366294917613,0,0,0,0,0,0,0,0,0,0,0,0,0.0511666545635465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.107712280690034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178985253255457,0,0,0,0,0,0,0,0,0,0,0,0,0.161727153872444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.076372837350285,0,0,0,0,0,0,0,0.0390311568754432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30946298958347,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18586622055019,0,0,0,0.135928238028603,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.181450694523334,0,0,0.119439685395328,0,-0.0650665979371567,0,0,0,0,0,0,0.080863576936222,0,0,0,0,0,0,0,0.139650830268821,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161727153872444,0,0,0,0,0,0,-0.280072095322966,0,-0.117999461395817,-0.235347534649571,0,0,-0.125672761358036,0,0,-0.0477396614475454,0,0,-0.174992895090299,-0.56547415654894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161727153872444,0,0,-0.0568589461625992,0.34945034357237,0,-0.007103813250045,0,0,-0.216424616284367,0,0,0,-0.0959594073735869 | |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC4115 | |rna_catalog_number=SC4115 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=119H4 | |rna_tube_id=119H4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.GATCAG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:0787 | |sample_cell_catalog=lot:0787 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.94726163892124e-206!GO:0005737;cytoplasm;1.56309031853365e-192!GO:0043226;organelle;2.4694568744761e-159!GO:0043229;intracellular organelle;3.12391028531737e-159!GO:0043231;intracellular membrane-bound organelle;2.78989295980043e-152!GO:0043227;membrane-bound organelle;7.73265349889237e-152!GO:0044444;cytoplasmic part;3.62687773628999e-134!GO:0044422;organelle part;9.05378033491127e-127!GO:0044446;intracellular organelle part;1.11310526017081e-125!GO:0032991;macromolecular complex;2.21201551240554e-75!GO:0005515;protein binding;6.70938261206351e-75!GO:0044238;primary metabolic process;1.37671855546746e-72!GO:0044237;cellular metabolic process;3.54627485753548e-72!GO:0030529;ribonucleoprotein complex;1.54731891221677e-70!GO:0005739;mitochondrion;4.0291467015736e-69!GO:0043170;macromolecule metabolic process;2.7837353726208e-61!GO:0043233;organelle lumen;1.59748358442827e-54!GO:0031974;membrane-enclosed lumen;1.59748358442827e-54!GO:0031090;organelle membrane;9.61180397734542e-51!GO:0005840;ribosome;3.00024620012816e-50!GO:0003723;RNA binding;7.61101673499284e-50!GO:0019538;protein metabolic process;1.19850251351466e-49!GO:0044428;nuclear part;1.70952750037103e-48!GO:0009058;biosynthetic process;4.35741094698328e-48!GO:0006412;translation;2.62860606217035e-46!GO:0044429;mitochondrial part;1.98439564190382e-45!GO:0005634;nucleus;5.44318892748606e-45!GO:0016043;cellular component organization and biogenesis;8.06668813602241e-45!GO:0044260;cellular macromolecule metabolic process;1.15831460140668e-44!GO:0003735;structural constituent of ribosome;2.21355196431829e-44!GO:0044267;cellular protein metabolic process;2.9755633120261e-44!GO:0044249;cellular biosynthetic process;3.20851890302702e-43!GO:0031967;organelle envelope;1.6257539045979e-39!GO:0031975;envelope;4.09782548178847e-39!GO:0009059;macromolecule biosynthetic process;9.9170579227023e-39!GO:0033279;ribosomal subunit;2.88962246537139e-38!GO:0043234;protein complex;2.24718434490728e-37!GO:0033036;macromolecule localization;2.50901433493708e-36!GO:0015031;protein transport;7.37427791621936e-36!GO:0008104;protein localization;2.6582510024209e-34!GO:0005829;cytosol;2.05253574629189e-33!GO:0045184;establishment of protein localization;2.70960004777553e-33!GO:0006996;organelle organization and biogenesis;1.13193488885557e-32!GO:0043228;non-membrane-bound organelle;1.61645662508263e-32!GO:0043232;intracellular non-membrane-bound organelle;1.61645662508263e-32!GO:0005740;mitochondrial envelope;4.04314488545118e-31!GO:0006396;RNA processing;3.88496378063687e-30!GO:0046907;intracellular transport;2.05969282759828e-29!GO:0043283;biopolymer metabolic process;2.35705669869929e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.19714943702228e-29!GO:0031966;mitochondrial membrane;1.00278215631932e-28!GO:0031981;nuclear lumen;1.05120394632235e-28!GO:0019866;organelle inner membrane;9.42280002815467e-28!GO:0005743;mitochondrial inner membrane;1.51915319997714e-26!GO:0065003;macromolecular complex assembly;5.10763138736563e-26!GO:0006886;intracellular protein transport;1.89342496768652e-24!GO:0016071;mRNA metabolic process;5.70490156063571e-24!GO:0022607;cellular component assembly;8.11816276039811e-24!GO:0044445;cytosolic part;6.42017143343987e-23!GO:0010467;gene expression;9.82685617913272e-23!GO:0008380;RNA splicing;2.96019116377915e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.47223650340043e-21!GO:0006397;mRNA processing;1.56945550796352e-20!GO:0006259;DNA metabolic process;3.2887498916654e-20!GO:0012505;endomembrane system;4.14711316866732e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.62552502238332e-20!GO:0015935;small ribosomal subunit;1.00813413206057e-19!GO:0015934;large ribosomal subunit;1.56463252401924e-19!GO:0051641;cellular localization;6.58569167989524e-19!GO:0006119;oxidative phosphorylation;7.10546469872743e-19!GO:0051649;establishment of cellular localization;1.09067125655912e-18!GO:0007049;cell cycle;1.27323553788403e-18!GO:0048770;pigment granule;2.0929520801313e-18!GO:0042470;melanosome;2.0929520801313e-18!GO:0005783;endoplasmic reticulum;3.02424300708574e-18!GO:0031980;mitochondrial lumen;3.08137045685084e-18!GO:0005759;mitochondrial matrix;3.08137045685084e-18!GO:0044455;mitochondrial membrane part;4.49929442106208e-17!GO:0000166;nucleotide binding;6.19138501427573e-17!GO:0005681;spliceosome;9.27076469349664e-17!GO:0051186;cofactor metabolic process;1.50816605221922e-16!GO:0005654;nucleoplasm;5.57770804562309e-16!GO:0005794;Golgi apparatus;8.43318930260439e-16!GO:0008134;transcription factor binding;9.86935753741947e-16!GO:0044432;endoplasmic reticulum part;1.16246927499266e-15!GO:0006457;protein folding;1.56030669967457e-15!GO:0016874;ligase activity;2.54133373005313e-15!GO:0043412;biopolymer modification;2.692276814561e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.67027231148508e-15!GO:0005746;mitochondrial respiratory chain;1.2425796662436e-14!GO:0022402;cell cycle process;1.24763572260314e-14!GO:0012501;programmed cell death;1.42787395111059e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.01784482164231e-14!GO:0006915;apoptosis;3.48521480637387e-14!GO:0006464;protein modification process;3.53182106142097e-14!GO:0005730;nucleolus;8.32055212512802e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.12346098707334e-13!GO:0044265;cellular macromolecule catabolic process;1.2682892336721e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.84383496447813e-13!GO:0003954;NADH dehydrogenase activity;1.84383496447813e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.84383496447813e-13!GO:0016462;pyrophosphatase activity;1.87825338038796e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.22063778316456e-13!GO:0044451;nucleoplasm part;2.31043664131955e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;2.33368584437285e-13!GO:0006605;protein targeting;3.97453995085325e-13!GO:0044248;cellular catabolic process;3.99082762268893e-13!GO:0005761;mitochondrial ribosome;5.07947088908529e-13!GO:0000313;organellar ribosome;5.07947088908529e-13!GO:0000278;mitotic cell cycle;5.33098168772844e-13!GO:0006732;coenzyme metabolic process;6.09232190124126e-13!GO:0008219;cell death;6.09232190124126e-13!GO:0016265;death;6.09232190124126e-13!GO:0017111;nucleoside-triphosphatase activity;8.01013760704893e-13!GO:0009057;macromolecule catabolic process;1.22876141533639e-12!GO:0032553;ribonucleotide binding;1.22876141533639e-12!GO:0032555;purine ribonucleotide binding;1.22876141533639e-12!GO:0022618;protein-RNA complex assembly;2.61301179696683e-12!GO:0017076;purine nucleotide binding;3.9150188493894e-12!GO:0043285;biopolymer catabolic process;6.76123144187533e-12!GO:0042775;organelle ATP synthesis coupled electron transport;7.49880625501993e-12!GO:0042773;ATP synthesis coupled electron transport;7.49880625501993e-12!GO:0051082;unfolded protein binding;1.09755948056949e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.16614237648486e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.21725804789602e-11!GO:0045271;respiratory chain complex I;1.21725804789602e-11!GO:0005747;mitochondrial respiratory chain complex I;1.21725804789602e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.29664070158459e-11!GO:0005789;endoplasmic reticulum membrane;1.65003424075285e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.59124982571672e-11!GO:0043067;regulation of programmed cell death;3.59863736622345e-11!GO:0042981;regulation of apoptosis;4.93991254330438e-11!GO:0043687;post-translational protein modification;6.11358356097878e-11!GO:0000502;proteasome complex (sensu Eukaryota);7.43524217798269e-11!GO:0006512;ubiquitin cycle;1.48284638249306e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.49943818858572e-10!GO:0009055;electron carrier activity;1.52509167169196e-10!GO:0019941;modification-dependent protein catabolic process;2.07133890934497e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.07133890934497e-10!GO:0005524;ATP binding;2.16007761114182e-10!GO:0044427;chromosomal part;2.32698070024928e-10!GO:0051276;chromosome organization and biogenesis;2.52434000794949e-10!GO:0032559;adenyl ribonucleotide binding;2.67131932936678e-10!GO:0044257;cellular protein catabolic process;2.85303101003043e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.21661774510623e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.44714692430391e-10!GO:0048523;negative regulation of cellular process;3.69612634960495e-10!GO:0005694;chromosome;5.55676565043656e-10!GO:0016192;vesicle-mediated transport;5.70286024823647e-10!GO:0016740;transferase activity;5.70315634715628e-10!GO:0003712;transcription cofactor activity;6.51670195445523e-10!GO:0030163;protein catabolic process;8.54753830703237e-10!GO:0030554;adenyl nucleotide binding;1.05944452850152e-09!GO:0005635;nuclear envelope;1.11810968399844e-09!GO:0000074;regulation of progression through cell cycle;1.40054039204314e-09!GO:0051726;regulation of cell cycle;1.43527551577317e-09!GO:0006323;DNA packaging;1.57622366661607e-09!GO:0000785;chromatin;1.61730332232662e-09!GO:0007005;mitochondrion organization and biogenesis;1.67372638713264e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.32022549706702e-09!GO:0000375;RNA splicing, via transesterification reactions;2.32022549706702e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.32022549706702e-09!GO:0008135;translation factor activity, nucleic acid binding;2.46461422994138e-09!GO:0048193;Golgi vesicle transport;3.25256701666217e-09!GO:0022403;cell cycle phase;3.87901701844647e-09!GO:0048519;negative regulation of biological process;4.55090350868615e-09!GO:0051188;cofactor biosynthetic process;5.03367796201128e-09!GO:0006163;purine nucleotide metabolic process;6.66500709526062e-09!GO:0006974;response to DNA damage stimulus;7.49256888120731e-09!GO:0009259;ribonucleotide metabolic process;1.12047490899005e-08!GO:0005768;endosome;1.22311133107093e-08!GO:0006399;tRNA metabolic process;1.47407340479612e-08!GO:0009056;catabolic process;1.48822206594827e-08!GO:0009150;purine ribonucleotide metabolic process;1.81122227019885e-08!GO:0007067;mitosis;1.90579233071058e-08!GO:0000087;M phase of mitotic cell cycle;1.94194377432647e-08!GO:0031965;nuclear membrane;2.30384068661665e-08!GO:0006461;protein complex assembly;2.60835330820806e-08!GO:0005793;ER-Golgi intermediate compartment;2.82739817781346e-08!GO:0042254;ribosome biogenesis and assembly;3.09791196737153e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.09791196737153e-08!GO:0006164;purine nucleotide biosynthetic process;3.45329306347713e-08!GO:0043069;negative regulation of programmed cell death;3.95488944757065e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.15284885220913e-08!GO:0006333;chromatin assembly or disassembly;4.67521737789247e-08!GO:0006913;nucleocytoplasmic transport;5.08146504704127e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.00149076086659e-08!GO:0006446;regulation of translational initiation;7.15579487830125e-08!GO:0006413;translational initiation;9.02909742592244e-08!GO:0009260;ribonucleotide biosynthetic process;9.06297489595754e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.28489781792736e-08!GO:0051169;nuclear transport;9.86478803585963e-08!GO:0043066;negative regulation of apoptosis;1.09621219148067e-07!GO:0006916;anti-apoptosis;1.09621219148067e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.12631356237442e-07!GO:0009141;nucleoside triphosphate metabolic process;1.16154877915448e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.30750223309205e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.30750223309205e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.30750223309205e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.32718977040228e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.49133164168751e-07!GO:0017038;protein import;1.49777217871448e-07!GO:0065004;protein-DNA complex assembly;1.7294110083417e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.77734203007247e-07!GO:0003676;nucleic acid binding;2.0987436249606e-07!GO:0008639;small protein conjugating enzyme activity;2.67509934009635e-07!GO:0043038;amino acid activation;2.67509934009635e-07!GO:0006418;tRNA aminoacylation for protein translation;2.67509934009635e-07!GO:0043039;tRNA aminoacylation;2.67509934009635e-07!GO:0006793;phosphorus metabolic process;2.76404423898104e-07!GO:0006796;phosphate metabolic process;2.76404423898104e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.1234141051741e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.1234141051741e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.16953045728351e-07!GO:0009719;response to endogenous stimulus;3.23068146357316e-07!GO:0044453;nuclear membrane part;3.28709031775762e-07!GO:0003743;translation initiation factor activity;3.78532418523131e-07!GO:0044431;Golgi apparatus part;3.7912014084514e-07!GO:0009117;nucleotide metabolic process;4.04989987063512e-07!GO:0004842;ubiquitin-protein ligase activity;4.85102666270027e-07!GO:0051246;regulation of protein metabolic process;5.09178059922624e-07!GO:0006260;DNA replication;5.12324727963884e-07!GO:0009060;aerobic respiration;6.10161797053291e-07!GO:0009108;coenzyme biosynthetic process;7.85342021906275e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.90801352416819e-07!GO:0006281;DNA repair;8.26476054823909e-07!GO:0019787;small conjugating protein ligase activity;8.95665459941433e-07!GO:0031497;chromatin assembly;9.35578228170867e-07!GO:0006334;nucleosome assembly;9.39362541296076e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.39723242768639e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.39723242768639e-07!GO:0015986;ATP synthesis coupled proton transport;9.83653869532363e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.83653869532363e-07!GO:0008565;protein transporter activity;9.83653869532363e-07!GO:0042623;ATPase activity, coupled;1.06694462163056e-06!GO:0006366;transcription from RNA polymerase II promoter;1.15452800088227e-06!GO:0000279;M phase;1.28983618105669e-06!GO:0015630;microtubule cytoskeleton;1.5576384111039e-06!GO:0016070;RNA metabolic process;1.60132591180286e-06!GO:0065002;intracellular protein transport across a membrane;1.67267793178028e-06!GO:0050794;regulation of cellular process;1.72146640304613e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.78987157218879e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.86754622740308e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.9536848037325e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.9536848037325e-06!GO:0005773;vacuole;2.12352293509137e-06!GO:0016881;acid-amino acid ligase activity;2.13543294694093e-06!GO:0045333;cellular respiration;2.24957764899063e-06!GO:0046034;ATP metabolic process;2.26695956856097e-06!GO:0016604;nuclear body;2.28915866929718e-06!GO:0051301;cell division;2.28915866929718e-06!GO:0019829;cation-transporting ATPase activity;2.55279148364766e-06!GO:0031988;membrane-bound vesicle;3.1973904407664e-06!GO:0003924;GTPase activity;3.43831220164556e-06!GO:0003714;transcription corepressor activity;3.51921968939833e-06!GO:0016126;sterol biosynthetic process;3.61861749233253e-06!GO:0016563;transcription activator activity;4.14961044382341e-06!GO:0031252;leading edge;4.52527370261189e-06!GO:0016310;phosphorylation;5.3156087407858e-06!GO:0016491;oxidoreductase activity;5.32492536539871e-06!GO:0007010;cytoskeleton organization and biogenesis;5.45291508310147e-06!GO:0015078;hydrogen ion transmembrane transporter activity;5.55241267173264e-06!GO:0016787;hydrolase activity;5.82725344612115e-06!GO:0048522;positive regulation of cellular process;5.98205770733383e-06!GO:0048475;coated membrane;6.16730010237288e-06!GO:0030117;membrane coat;6.16730010237288e-06!GO:0008610;lipid biosynthetic process;6.70343572871665e-06!GO:0042802;identical protein binding;6.70343572871665e-06!GO:0005643;nuclear pore;7.130407975622e-06!GO:0016887;ATPase activity;8.02283210826079e-06!GO:0030120;vesicle coat;9.1312709947249e-06!GO:0030662;coated vesicle membrane;9.1312709947249e-06!GO:0005788;endoplasmic reticulum lumen;9.25390772420645e-06!GO:0044440;endosomal part;9.42662851488556e-06!GO:0010008;endosome membrane;9.42662851488556e-06!GO:0008654;phospholipid biosynthetic process;1.11384740047192e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.19504439134983e-05!GO:0006754;ATP biosynthetic process;1.35550172046504e-05!GO:0006753;nucleoside phosphate metabolic process;1.35550172046504e-05!GO:0006364;rRNA processing;1.55779129294226e-05!GO:0045454;cell redox homeostasis;1.55779129294226e-05!GO:0000323;lytic vacuole;1.67518735363733e-05!GO:0005764;lysosome;1.67518735363733e-05!GO:0000139;Golgi membrane;1.75791161443974e-05!GO:0045259;proton-transporting ATP synthase complex;1.82530372183526e-05!GO:0006099;tricarboxylic acid cycle;1.89995097173413e-05!GO:0046356;acetyl-CoA catabolic process;1.89995097173413e-05!GO:0005762;mitochondrial large ribosomal subunit;1.98409335276293e-05!GO:0000315;organellar large ribosomal subunit;1.98409335276293e-05!GO:0016564;transcription repressor activity;2.04425518162697e-05!GO:0031410;cytoplasmic vesicle;2.05352042357476e-05!GO:0016568;chromatin modification;2.07030800123209e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.28210255019164e-05!GO:0048468;cell development;2.34344112681945e-05!GO:0006084;acetyl-CoA metabolic process;2.51871254791398e-05!GO:0031982;vesicle;2.52485925692811e-05!GO:0032446;protein modification by small protein conjugation;2.56667126783478e-05!GO:0016072;rRNA metabolic process;2.61441184654103e-05!GO:0005770;late endosome;2.82539142029312e-05!GO:0019899;enzyme binding;2.82539142029312e-05!GO:0006082;organic acid metabolic process;3.34071884365515e-05!GO:0006752;group transfer coenzyme metabolic process;3.41970931840365e-05!GO:0007264;small GTPase mediated signal transduction;3.50264515309148e-05!GO:0006695;cholesterol biosynthetic process;3.52144409183091e-05!GO:0016567;protein ubiquitination;3.5268201440993e-05!GO:0045786;negative regulation of progression through cell cycle;3.55537648518678e-05!GO:0019752;carboxylic acid metabolic process;3.829192759182e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.87516946523506e-05!GO:0016853;isomerase activity;4.31085300231916e-05!GO:0051187;cofactor catabolic process;4.63193449793552e-05!GO:0051329;interphase of mitotic cell cycle;5.56694029432672e-05!GO:0031324;negative regulation of cellular metabolic process;6.01017023338885e-05!GO:0051170;nuclear import;6.11982522825741e-05!GO:0065009;regulation of a molecular function;7.212631900286e-05!GO:0005667;transcription factor complex;7.54872119324532e-05!GO:0044262;cellular carbohydrate metabolic process;8.34989292373887e-05!GO:0006606;protein import into nucleus;8.85059600588961e-05!GO:0009109;coenzyme catabolic process;9.28076964065797e-05!GO:0046930;pore complex;9.6124344993181e-05!GO:0007243;protein kinase cascade;9.75867911489815e-05!GO:0051427;hormone receptor binding;9.79489459071414e-05!GO:0016607;nuclear speck;9.96255031550356e-05!GO:0009892;negative regulation of metabolic process;0.00010057229531981!GO:0005905;coated pit;0.000102724367030784!GO:0051325;interphase;0.000118053881374139!GO:0030029;actin filament-based process;0.00012371721988531!GO:0006888;ER to Golgi vesicle-mediated transport;0.000123925349265903!GO:0005525;GTP binding;0.000125681829595789!GO:0003713;transcription coactivator activity;0.000133459174435247!GO:0016779;nucleotidyltransferase activity;0.000139586079883998!GO:0003697;single-stranded DNA binding;0.000143411299391884!GO:0050789;regulation of biological process;0.000176615292833108!GO:0035257;nuclear hormone receptor binding;0.000179086152932784!GO:0000245;spliceosome assembly;0.000211936653803042!GO:0030176;integral to endoplasmic reticulum membrane;0.00021353856845239!GO:0004298;threonine endopeptidase activity;0.000236839608261431!GO:0019843;rRNA binding;0.000265541094903539!GO:0043065;positive regulation of apoptosis;0.000274015128698945!GO:0046474;glycerophospholipid biosynthetic process;0.000282646725450791!GO:0008026;ATP-dependent helicase activity;0.00028586681452128!GO:0008637;apoptotic mitochondrial changes;0.000298345052131119!GO:0006403;RNA localization;0.000305772737381194!GO:0048518;positive regulation of biological process;0.000321804727664536!GO:0030118;clathrin coat;0.000323230055532526!GO:0050657;nucleic acid transport;0.000324803403233676!GO:0051236;establishment of RNA localization;0.000324803403233676!GO:0050658;RNA transport;0.000324803403233676!GO:0043068;positive regulation of programmed cell death;0.000346859770301914!GO:0033116;ER-Golgi intermediate compartment membrane;0.000359254813194194!GO:0006839;mitochondrial transport;0.000371416529404172!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000388107240552475!GO:0000314;organellar small ribosomal subunit;0.00041265462512554!GO:0005763;mitochondrial small ribosomal subunit;0.00041265462512554!GO:0043623;cellular protein complex assembly;0.000443225798403291!GO:0000786;nucleosome;0.000480442006573783!GO:0016044;membrane organization and biogenesis;0.000490408060955555!GO:0004386;helicase activity;0.000524798065709368!GO:0008092;cytoskeletal protein binding;0.000526240620237536!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000527109743601632!GO:0008632;apoptotic program;0.000527109743601632!GO:0048471;perinuclear region of cytoplasm;0.000590486453781205!GO:0008250;oligosaccharyl transferase complex;0.000623482889621122!GO:0005874;microtubule;0.000641402918675381!GO:0009967;positive regulation of signal transduction;0.00065007894493641!GO:0008361;regulation of cell size;0.000667555058885285!GO:0009165;nucleotide biosynthetic process;0.000707143183340119!GO:0015980;energy derivation by oxidation of organic compounds;0.000740923513043966!GO:0001558;regulation of cell growth;0.000760651357983783!GO:0006091;generation of precursor metabolites and energy;0.000764237610065871!GO:0006520;amino acid metabolic process;0.000766942474473566!GO:0005791;rough endoplasmic reticulum;0.00078683154425255!GO:0016049;cell growth;0.00078747343222308!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00080078100294664!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000805310872018499!GO:0032561;guanyl ribonucleotide binding;0.000808524626832218!GO:0019001;guanyl nucleotide binding;0.000808524626832218!GO:0006626;protein targeting to mitochondrion;0.000822319230642812!GO:0030867;rough endoplasmic reticulum membrane;0.000822319230642812!GO:0003899;DNA-directed RNA polymerase activity;0.000839137564464097!GO:0031968;organelle outer membrane;0.000977843161539491!GO:0043566;structure-specific DNA binding;0.000998596012628225!GO:0046467;membrane lipid biosynthetic process;0.00101619468769541!GO:0016481;negative regulation of transcription;0.00108572362121292!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00109151288327715!GO:0001836;release of cytochrome c from mitochondria;0.00117342627491052!GO:0005048;signal sequence binding;0.00117661824078282!GO:0051920;peroxiredoxin activity;0.00120323543274415!GO:0005798;Golgi-associated vesicle;0.00124689997466957!GO:0043681;protein import into mitochondrion;0.00126618037726604!GO:0019867;outer membrane;0.00134033013816712!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00134285924265464!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00135127243634281!GO:0005769;early endosome;0.00140759344573026!GO:0030119;AP-type membrane coat adaptor complex;0.00143574077416237!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00153486320867645!GO:0005741;mitochondrial outer membrane;0.00157727353021913!GO:0030133;transport vesicle;0.00172251039891123!GO:0007006;mitochondrial membrane organization and biogenesis;0.0017856319516729!GO:0030131;clathrin adaptor complex;0.00182869111222653!GO:0001726;ruffle;0.00188862468334354!GO:0004674;protein serine/threonine kinase activity;0.00189577405388691!GO:0018196;peptidyl-asparagine modification;0.00190685720243074!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00190685720243074!GO:0005885;Arp2/3 protein complex;0.00191441025172544!GO:0006979;response to oxidative stress;0.00191905671052137!GO:0043021;ribonucleoprotein binding;0.00191905671052137!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00191905671052137!GO:0016859;cis-trans isomerase activity;0.00193457428159514!GO:0051789;response to protein stimulus;0.00195124229831129!GO:0006986;response to unfolded protein;0.00195124229831129!GO:0016301;kinase activity;0.001970824921335!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00205692164428492!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00211531431410916!GO:0005813;centrosome;0.00231787130567316!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00234973058560813!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00237736964074399!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00239586980830069!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00243773141820216!GO:0031902;late endosome membrane;0.00244319301904917!GO:0006613;cotranslational protein targeting to membrane;0.00256596906665149!GO:0019318;hexose metabolic process;0.00290852718859072!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00292138923414373!GO:0005774;vacuolar membrane;0.00293239293109016!GO:0045941;positive regulation of transcription;0.00305218102526087!GO:0005815;microtubule organizing center;0.00307904184032847!GO:0007265;Ras protein signal transduction;0.00322151725546471!GO:0006740;NADPH regeneration;0.00322957288589804!GO:0006098;pentose-phosphate shunt;0.00322957288589804!GO:0043488;regulation of mRNA stability;0.00335788143674151!GO:0043487;regulation of RNA stability;0.00335788143674151!GO:0005996;monosaccharide metabolic process;0.0034262210623906!GO:0000151;ubiquitin ligase complex;0.00346241900329507!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00355557669495411!GO:0046489;phosphoinositide biosynthetic process;0.00358180775125207!GO:0051028;mRNA transport;0.00360221533382921!GO:0045893;positive regulation of transcription, DNA-dependent;0.00410838563783019!GO:0015992;proton transport;0.00412166694625421!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0042472956797068!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0042472956797068!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0042472956797068!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00425328433802352!GO:0030031;cell projection biogenesis;0.00438972996478847!GO:0040008;regulation of growth;0.00446100482645811!GO:0030132;clathrin coat of coated pit;0.00446987471378932!GO:0008283;cell proliferation;0.00453877269002405!GO:0006818;hydrogen transport;0.00456777194616408!GO:0051101;regulation of DNA binding;0.00473980056287704!GO:0004576;oligosaccharyl transferase activity;0.0048124151346225!GO:0017166;vinculin binding;0.0048124151346225!GO:0030027;lamellipodium;0.00483385900672361!GO:0006066;alcohol metabolic process;0.00489320656291763!GO:0006007;glucose catabolic process;0.00492419280642694!GO:0005819;spindle;0.00501873303115639!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00523238335578071!GO:0015399;primary active transmembrane transporter activity;0.00523238335578071!GO:0005684;U2-dependent spliceosome;0.00523238335578071!GO:0003724;RNA helicase activity;0.00525824594386562!GO:0006917;induction of apoptosis;0.00531645124692155!GO:0006778;porphyrin metabolic process;0.00537391114912272!GO:0033013;tetrapyrrole metabolic process;0.00537391114912272!GO:0030880;RNA polymerase complex;0.00541154313594067!GO:0006414;translational elongation;0.00554599723759294!GO:0030145;manganese ion binding;0.00557392582960339!GO:0030125;clathrin vesicle coat;0.00557392582960339!GO:0030665;clathrin coated vesicle membrane;0.00557392582960339!GO:0016272;prefoldin complex;0.00561546137196975!GO:0016125;sterol metabolic process;0.00570223951677407!GO:0044255;cellular lipid metabolic process;0.00610562595106618!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00610847163246343!GO:0030658;transport vesicle membrane;0.00673615623932517!GO:0009966;regulation of signal transduction;0.00673615623932517!GO:0001666;response to hypoxia;0.00708224747148286!GO:0006643;membrane lipid metabolic process;0.00708224747148286!GO:0012502;induction of programmed cell death;0.00730870605101001!GO:0006650;glycerophospholipid metabolic process;0.00745566226520536!GO:0046483;heterocycle metabolic process;0.00769534710340026!GO:0006595;polyamine metabolic process;0.00786606338294502!GO:0050790;regulation of catalytic activity;0.00794408460780782!GO:0007088;regulation of mitosis;0.0079957576218092!GO:0008033;tRNA processing;0.00807121733320864!GO:0008629;induction of apoptosis by intracellular signals;0.00808780072550096!GO:0044437;vacuolar part;0.00811330058622129!GO:0005765;lysosomal membrane;0.00851564126340491!GO:0043154;negative regulation of caspase activity;0.00856537544356625!GO:0006807;nitrogen compound metabolic process;0.00897332996693324!GO:0048487;beta-tubulin binding;0.00908525401101557!GO:0035258;steroid hormone receptor binding;0.00909096630573399!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00921825797837356!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00921825797837356!GO:0051252;regulation of RNA metabolic process;0.00963470959020535!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.010087278894064!GO:0030659;cytoplasmic vesicle membrane;0.0102700567782491!GO:0051287;NAD binding;0.0107468712715966!GO:0050662;coenzyme binding;0.0112993057711551!GO:0006779;porphyrin biosynthetic process;0.0113873371213108!GO:0033014;tetrapyrrole biosynthetic process;0.0113873371213108!GO:0006749;glutathione metabolic process;0.0115593178607833!GO:0006509;membrane protein ectodomain proteolysis;0.0116391444153748!GO:0033619;membrane protein proteolysis;0.0116391444153748!GO:0007242;intracellular signaling cascade;0.0116626228873554!GO:0016311;dephosphorylation;0.0117861778319897!GO:0006612;protein targeting to membrane;0.0118426888373502!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0118426888373502!GO:0000428;DNA-directed RNA polymerase complex;0.0118426888373502!GO:0000096;sulfur amino acid metabolic process;0.0119078598505112!GO:0031072;heat shock protein binding;0.0122211042137326!GO:0008186;RNA-dependent ATPase activity;0.0127204934729039!GO:0006519;amino acid and derivative metabolic process;0.0127883108530227!GO:0043281;regulation of caspase activity;0.0128992926079485!GO:0033673;negative regulation of kinase activity;0.0130072087121762!GO:0006469;negative regulation of protein kinase activity;0.0130072087121762!GO:0030660;Golgi-associated vesicle membrane;0.0134260535332888!GO:0006739;NADP metabolic process;0.0134687575518769!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0140187855414692!GO:0006220;pyrimidine nucleotide metabolic process;0.0140187855414692!GO:0007051;spindle organization and biogenesis;0.0143484459086977!GO:0051348;negative regulation of transferase activity;0.0145300785453576!GO:0042168;heme metabolic process;0.0149062142229708!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0149965723756727!GO:0009308;amine metabolic process;0.0150466916069453!GO:0032508;DNA duplex unwinding;0.0151507893713321!GO:0032392;DNA geometric change;0.0151507893713321!GO:0006402;mRNA catabolic process;0.0152059118324087!GO:0008047;enzyme activator activity;0.0155125977653218!GO:0051087;chaperone binding;0.0156110837804836!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0161999933933652!GO:0015002;heme-copper terminal oxidase activity;0.0161999933933652!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0161999933933652!GO:0004129;cytochrome-c oxidase activity;0.0161999933933652!GO:0006401;RNA catabolic process;0.0162681260762583!GO:0007040;lysosome organization and biogenesis;0.0169034581811985!GO:0006733;oxidoreduction coenzyme metabolic process;0.0171736051186011!GO:0006767;water-soluble vitamin metabolic process;0.0180678700600196!GO:0016860;intramolecular oxidoreductase activity;0.0182309108721898!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0182309108721898!GO:0000049;tRNA binding;0.018274074750187!GO:0051168;nuclear export;0.0182773778227835!GO:0004680;casein kinase activity;0.0183722230038164!GO:0006633;fatty acid biosynthetic process;0.0185056118185727!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0195449976919887!GO:0000118;histone deacetylase complex;0.0195638477203853!GO:0016791;phosphoric monoester hydrolase activity;0.0195638477203853!GO:0051128;regulation of cellular component organization and biogenesis;0.0196886325077425!GO:0046519;sphingoid metabolic process;0.0196886325077425!GO:0015631;tubulin binding;0.0205220126921013!GO:0008139;nuclear localization sequence binding;0.0207418213855768!GO:0005975;carbohydrate metabolic process;0.0215507374776537!GO:0043433;negative regulation of transcription factor activity;0.0216590867786717!GO:0030433;ER-associated protein catabolic process;0.02166348140159!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.02166348140159!GO:0005869;dynactin complex;0.0216635299884472!GO:0006261;DNA-dependent DNA replication;0.0221858570456872!GO:0030503;regulation of cell redox homeostasis;0.022313442522468!GO:0046365;monosaccharide catabolic process;0.0224405284343629!GO:0044452;nucleolar part;0.0225737998007443!GO:0003684;damaged DNA binding;0.0225737998007443!GO:0006644;phospholipid metabolic process;0.0225737998007443!GO:0046822;regulation of nucleocytoplasmic transport;0.0228708776495936!GO:0051098;regulation of binding;0.0229456729922236!GO:0006383;transcription from RNA polymerase III promoter;0.0229609462797697!GO:0051090;regulation of transcription factor activity;0.0229675600147765!GO:0005862;muscle thin filament tropomyosin;0.0232416952809207!GO:0045892;negative regulation of transcription, DNA-dependent;0.0234753519822303!GO:0007266;Rho protein signal transduction;0.0234930849660858!GO:0006950;response to stress;0.0234930849660858!GO:0043284;biopolymer biosynthetic process;0.0234930849660858!GO:0008094;DNA-dependent ATPase activity;0.0237940639045956!GO:0043492;ATPase activity, coupled to movement of substances;0.0238455096820715!GO:0006672;ceramide metabolic process;0.0246664892394038!GO:0040029;regulation of gene expression, epigenetic;0.0247294027170463!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0248610961209797!GO:0000086;G2/M transition of mitotic cell cycle;0.0248657861609985!GO:0048037;cofactor binding;0.0249857827046021!GO:0005657;replication fork;0.0250484197701165!GO:0006268;DNA unwinding during replication;0.0251488192817029!GO:0035035;histone acetyltransferase binding;0.0253865277848047!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0256473649290692!GO:0006506;GPI anchor biosynthetic process;0.0256473649290692!GO:0008538;proteasome activator activity;0.0261384763227588!GO:0065007;biological regulation;0.026343335796796!GO:0007017;microtubule-based process;0.0263810871968724!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0264346312437469!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0271840315904298!GO:0006289;nucleotide-excision repair;0.0272301399945488!GO:0008652;amino acid biosynthetic process;0.0272320907541669!GO:0004004;ATP-dependent RNA helicase activity;0.0272320907541669!GO:0007033;vacuole organization and biogenesis;0.0273207026188919!GO:0046394;carboxylic acid biosynthetic process;0.0275121591736317!GO:0016053;organic acid biosynthetic process;0.0275121591736317!GO:0016197;endosome transport;0.0276266416689339!GO:0000209;protein polyubiquitination;0.0279266393848132!GO:0006984;ER-nuclear signaling pathway;0.028023392673734!GO:0019320;hexose catabolic process;0.0282485198989382!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0282524608678867!GO:0019206;nucleoside kinase activity;0.0283012857654262!GO:0009112;nucleobase metabolic process;0.0283725879364354!GO:0031301;integral to organelle membrane;0.0284985660497202!GO:0008286;insulin receptor signaling pathway;0.0288802191859746!GO:0007346;regulation of progression through mitotic cell cycle;0.0289293305662448!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0290159613381834!GO:0032981;mitochondrial respiratory chain complex I assembly;0.029022883917387!GO:0010257;NADH dehydrogenase complex assembly;0.029022883917387!GO:0033108;mitochondrial respiratory chain complex assembly;0.029022883917387!GO:0016363;nuclear matrix;0.029022883917387!GO:0006783;heme biosynthetic process;0.029022883917387!GO:0006769;nicotinamide metabolic process;0.029022883917387!GO:0006497;protein amino acid lipidation;0.0290622040874637!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0292068919607182!GO:0044433;cytoplasmic vesicle part;0.0295942326235085!GO:0033559;unsaturated fatty acid metabolic process;0.0296520158580689!GO:0006636;unsaturated fatty acid biosynthetic process;0.0296520158580689!GO:0031272;regulation of pseudopodium formation;0.0296520158580689!GO:0031269;pseudopodium formation;0.0296520158580689!GO:0031344;regulation of cell projection organization and biogenesis;0.0296520158580689!GO:0031268;pseudopodium organization and biogenesis;0.0296520158580689!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0296520158580689!GO:0031274;positive regulation of pseudopodium formation;0.0296520158580689!GO:0005083;small GTPase regulator activity;0.0303252810795537!GO:0007021;tubulin folding;0.0306048122546354!GO:0030521;androgen receptor signaling pathway;0.0307657055827514!GO:0008243;plasminogen activator activity;0.0309876343617658!GO:0043189;H4/H2A histone acetyltransferase complex;0.0314925872253088!GO:0005938;cell cortex;0.0316084534060775!GO:0003756;protein disulfide isomerase activity;0.0323424240631695!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0323424240631695!GO:0004177;aminopeptidase activity;0.0323658069907629!GO:0016485;protein processing;0.0326807168829596!GO:0032594;protein transport within lipid bilayer;0.0326807168829596!GO:0032907;transforming growth factor-beta3 production;0.0326807168829596!GO:0032596;protein transport into lipid raft;0.0326807168829596!GO:0032910;regulation of transforming growth factor-beta3 production;0.0326807168829596!GO:0032595;B cell receptor transport within lipid bilayer;0.0326807168829596!GO:0033606;chemokine receptor transport within lipid bilayer;0.0326807168829596!GO:0032600;chemokine receptor transport out of lipid raft;0.0326807168829596!GO:0032599;protein transport out of lipid raft;0.0326807168829596!GO:0032597;B cell receptor transport into lipid raft;0.0326807168829596!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0326807168829596!GO:0000792;heterochromatin;0.0335589447200517!GO:0003729;mRNA binding;0.0347142908945774!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0347580517170798!GO:0006458;'de novo' protein folding;0.0349407943220728!GO:0051084;'de novo' posttranslational protein folding;0.0349407943220728!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0367840195568009!GO:0042158;lipoprotein biosynthetic process;0.0369217286987913!GO:0008625;induction of apoptosis via death domain receptors;0.0376519885132068!GO:0045792;negative regulation of cell size;0.0376519885132068!GO:0006629;lipid metabolic process;0.0377921888667613!GO:0003682;chromatin binding;0.0379210654042381!GO:0000082;G1/S transition of mitotic cell cycle;0.0380795354180559!GO:0006505;GPI anchor metabolic process;0.0385133196969864!GO:0006417;regulation of translation;0.0388436127704285!GO:0031529;ruffle organization and biogenesis;0.0391210021963877!GO:0046164;alcohol catabolic process;0.0403482237009805!GO:0003746;translation elongation factor activity;0.0403604240988268!GO:0043414;biopolymer methylation;0.0406658665642327!GO:0004721;phosphoprotein phosphatase activity;0.04098610050571!GO:0006096;glycolysis;0.0410145634053187!GO:0006013;mannose metabolic process;0.0412037803156796!GO:0051336;regulation of hydrolase activity;0.041262187420814!GO:0005832;chaperonin-containing T-complex;0.041262187420814!GO:0003678;DNA helicase activity;0.0412688170426248!GO:0005092;GDP-dissociation inhibitor activity;0.0416013927986491!GO:0005637;nuclear inner membrane;0.0419454969856741!GO:0003711;transcription elongation regulator activity;0.0420716997805485!GO:0030308;negative regulation of cell growth;0.0426170642033061!GO:0000123;histone acetyltransferase complex;0.0429763572325257!GO:0051540;metal cluster binding;0.0429763572325257!GO:0051536;iron-sulfur cluster binding;0.0429763572325257!GO:0051539;4 iron, 4 sulfur cluster binding;0.0443600861872544!GO:0008426;protein kinase C inhibitor activity;0.0443600861872544!GO:0030508;thiol-disulfide exchange intermediate activity;0.0443600861872544!GO:0051338;regulation of transferase activity;0.044609062952615!GO:0006338;chromatin remodeling;0.0448145548739338!GO:0009303;rRNA transcription;0.0454216008534039!GO:0044275;cellular carbohydrate catabolic process;0.0457102601976682!GO:0035267;NuA4 histone acetyltransferase complex;0.0463635541830282!GO:0008203;cholesterol metabolic process;0.0466722861835667!GO:0003779;actin binding;0.0467727426998527!GO:0032507;maintenance of cellular protein localization;0.0480073180613981!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0480469137686328!GO:0046870;cadmium ion binding;0.0484825736402749!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0488815166719922!GO:0042982;amyloid precursor protein metabolic process;0.0492252959127365!GO:0046426;negative regulation of JAK-STAT cascade;0.0492534973311083!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0493003298409927!GO:0043022;ribosome binding;0.0494172291411742!GO:0000305;response to oxygen radical;0.0494172291411742!GO:0045334;clathrin-coated endocytic vesicle;0.0494639729092984!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0496896500140487 | |||
|sample_id=11516 | |sample_id=11516 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=XCPE1{core}:2.05747226137;ZEB1:1.95512620104;MYOD1:1.78303980301;SNAI1..3:1.76024385102;ZNF148:1.51283291733;SP1:1.51125000144;ZNF423:1.43846541217;LHX3,4:1.34461387577;TFCP2:1.31239826431;VSX1,2:1.30251295176;PBX1:1.2980213164;LMO2:1.13991703803;RXRA_VDR{dimer}:1.11620119185;PPARG:1.05940985081;LEF1_TCF7_TCF7L1,2:1.05134188753;GTF2A1,2:1.04331731143;EBF1:1.02583223012;HNF1A:1.01441474706;POU2F1..3:1.00816589948;bHLH_family:0.984761868075;TFAP2{A,C}:0.981922772678;NKX2-3_NKX2-5:0.948115083039;HOX{A5,B5}:0.892949882071;ZIC1..3:0.850332676785;GZF1:0.847953387359;TP53:0.843479296314;RREB1:0.823394130302;ADNP_IRX_SIX_ZHX:0.775229552294;SOX2:0.771214704779;GLI1..3:0.736717939199;TBX4,5:0.733687887062;MTF1:0.674404622159;TEAD1:0.668285656409;ESRRA:0.663580410302;STAT5{A,B}:0.657662229631;NR3C1:0.638146239919;JUN:0.637279820866;HIC1:0.636937758943;TFAP2B:0.632960454198;FOXQ1:0.603412191968;TBP:0.590035029633;GFI1:0.588650378022;HAND1,2:0.561314610194;ONECUT1,2:0.553468775388;SPZ1:0.545219381628;FOSL2:0.502606850719;NR1H4:0.450683816931;ESR1:0.43458277615;NFY{A,B,C}:0.430612907779;NR6A1:0.399211395082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.378711366215;GFI1B:0.363074795771;PAX1,9:0.33398180275;PAX5:0.329924528223;FOS_FOS{B,L1}_JUN{B,D}:0.329819063016;POU5F1:0.326234196689;TLX1..3_NFIC{dimer}:0.303624148078;MAZ:0.26427071207;RORA:0.240374292539;TFAP4:0.212250809808;TEF:0.212112108376;SOX{8,9,10}:0.212079522587;NFKB1_REL_RELA:0.211278776276;PAX8:0.196746969754;NR5A1,2:0.187343839993;POU3F1..4:0.181230480248;BACH2:0.163333005423;GTF2I:0.153546358871;CRX:0.143949027709;ZBTB6:0.131866335008;EP300:0.12117390169;TFDP1:0.0939855674523;REST:0.0674083293112;HNF4A_NR2F1,2:0.0597463133821;T:0.0544103297912;POU1F1:0.0476592698096;SOX17:0.0388893536384;AR:0.0299552088639;IKZF1:0.0271759883355;NFE2L2:0.0110858464345;FOX{F1,F2,J1}:0.00731753099731;MEF2{A,B,C,D}:-0.00150600760476;NFE2:-0.0046907088222;STAT2,4,6:-0.0137567492015;RXR{A,B,G}:-0.0366573134712;GCM1,2:-0.0387176393756;PRRX1,2:-0.0415713563127;FOXM1:-0.0589695056579;NANOG:-0.0767890609723;SRF:-0.0932427447405;PATZ1:-0.0950428905318;CEBPA,B_DDIT3:-0.0998751808149;E2F1..5:-0.101375265703;OCT4_SOX2{dimer}:-0.115654974709;ZFP161:-0.118122162095;HLF:-0.121042164473;MTE{core}:-0.139187734511;KLF4:-0.150059458751;MED-1{core}:-0.172946101861;TAL1_TCF{3,4,12}:-0.181101409734;NFE2L1:-0.190522334098;ETS1,2:-0.229153012034;RFX1:-0.258507584587;ZNF143:-0.266738306121;GATA6:-0.285246782406;ARID5B:-0.288703382762;MYB:-0.304932280069;NHLH1,2:-0.315010184583;MYBL2:-0.332267923996;PDX1:-0.3573594364;EN1,2:-0.358402256489;XBP1:-0.376132883214;SREBF1,2:-0.377378175224;CUX2:-0.387359545653;ATF2:-0.388121191241;RUNX1..3:-0.393297198201;SMAD1..7,9:-0.401795582288;HMX1:-0.422180159316;HOX{A6,A7,B6,B7}:-0.425065621255;NKX3-1:-0.446514175486;SPIB:-0.46588143882;HES1:-0.484591110727;NKX6-1,2:-0.485557761693;EGR1..3:-0.491648137572;ALX1:-0.498908330171;ZNF384:-0.508402051918;TOPORS:-0.512017922262;FOXL1:-0.522953073294;MZF1:-0.535782160913;UFEwm:-0.548856972792;ATF4:-0.564334158702;IRF7:-0.575562697272;ATF6:-0.584898450184;PRDM1:-0.594298727772;RFX2..5_RFXANK_RFXAP:-0.594370983141;NFIL3:-0.596394449262;DBP:-0.608703909268;FOXA2:-0.623976687121;ZNF238:-0.628707654115;SOX5:-0.631962521506;SPI1:-0.637443103637;CDC5L:-0.640358129325;PITX1..3:-0.646425955382;HBP1_HMGB_SSRP1_UBTF:-0.649858435378;BREu{core}:-0.652045383767;NFATC1..3:-0.695892070161;FOX{D1,D2}:-0.70980890022;ALX4:-0.734508270776;NRF1:-0.748662404067;POU6F1:-0.768439677281;EVI1:-0.787859306462;NKX3-2:-0.789903107255;HOX{A4,D4}:-0.799951747783;TLX2:-0.808530103218;PAX2:-0.812693816882;FOXD3:-0.841782464666;CDX1,2,4:-0.842463921506;ATF5_CREB3:-0.885074925171;PAX6:-0.911019930069;IRF1,2:-0.95093687373;MYFfamily:-0.957787009967;FOXP1:-0.986136578595;ELK1,4_GABP{A,B1}:-0.986498873368;NKX2-2,8:-0.990806157035;YY1:-0.99642863608;HIF1A:-0.998367876091;PAX4:-1.06812186155;CREB1:-1.09347692154;STAT1,3:-1.10241747221;IKZF2:-1.11246307306;FOX{I1,J2}:-1.11757826089;AHR_ARNT_ARNT2:-1.12723082578;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16064704733;NANOG{mouse}:-1.18166158539;ELF1,2,4:-1.18746235852;PAX3,7:-1.19534740703;NKX2-1,4:-1.19735338828;MAFB:-1.20554111512;FOXO1,3,4:-1.20802124726;TGIF1:-1.22772278315;FOXP3:-1.23321003153;DMAP1_NCOR{1,2}_SMARC:-1.26715776784;HOXA9_MEIS1:-1.27501399475;AIRE:-1.30251423885;BPTF:-1.33513371825;HSF1,2:-1.33837151852;RBPJ:-1.35126165074;FOXN1:-1.37116456707;NFIX:-1.37436692614;HMGA1,2:-1.395141787;ZBTB16:-1.43169930389;GATA4:-1.68961348402 | |top_motifs=XCPE1{core}:2.05747226137;ZEB1:1.95512620104;MYOD1:1.78303980301;SNAI1..3:1.76024385102;ZNF148:1.51283291733;SP1:1.51125000144;ZNF423:1.43846541217;LHX3,4:1.34461387577;TFCP2:1.31239826431;VSX1,2:1.30251295176;PBX1:1.2980213164;LMO2:1.13991703803;RXRA_VDR{dimer}:1.11620119185;PPARG:1.05940985081;LEF1_TCF7_TCF7L1,2:1.05134188753;GTF2A1,2:1.04331731143;EBF1:1.02583223012;HNF1A:1.01441474706;POU2F1..3:1.00816589948;bHLH_family:0.984761868075;TFAP2{A,C}:0.981922772678;NKX2-3_NKX2-5:0.948115083039;HOX{A5,B5}:0.892949882071;ZIC1..3:0.850332676785;GZF1:0.847953387359;TP53:0.843479296314;RREB1:0.823394130302;ADNP_IRX_SIX_ZHX:0.775229552294;SOX2:0.771214704779;GLI1..3:0.736717939199;TBX4,5:0.733687887062;MTF1:0.674404622159;TEAD1:0.668285656409;ESRRA:0.663580410302;STAT5{A,B}:0.657662229631;NR3C1:0.638146239919;JUN:0.637279820866;HIC1:0.636937758943;TFAP2B:0.632960454198;FOXQ1:0.603412191968;TBP:0.590035029633;GFI1:0.588650378022;HAND1,2:0.561314610194;ONECUT1,2:0.553468775388;SPZ1:0.545219381628;FOSL2:0.502606850719;NR1H4:0.450683816931;ESR1:0.43458277615;NFY{A,B,C}:0.430612907779;NR6A1:0.399211395082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.378711366215;GFI1B:0.363074795771;PAX1,9:0.33398180275;PAX5:0.329924528223;FOS_FOS{B,L1}_JUN{B,D}:0.329819063016;POU5F1:0.326234196689;TLX1..3_NFIC{dimer}:0.303624148078;MAZ:0.26427071207;RORA:0.240374292539;TFAP4:0.212250809808;TEF:0.212112108376;SOX{8,9,10}:0.212079522587;NFKB1_REL_RELA:0.211278776276;PAX8:0.196746969754;NR5A1,2:0.187343839993;POU3F1..4:0.181230480248;BACH2:0.163333005423;GTF2I:0.153546358871;CRX:0.143949027709;ZBTB6:0.131866335008;EP300:0.12117390169;TFDP1:0.0939855674523;REST:0.0674083293112;HNF4A_NR2F1,2:0.0597463133821;T:0.0544103297912;POU1F1:0.0476592698096;SOX17:0.0388893536384;AR:0.0299552088639;IKZF1:0.0271759883355;NFE2L2:0.0110858464345;FOX{F1,F2,J1}:0.00731753099731;MEF2{A,B,C,D}:-0.00150600760476;NFE2:-0.0046907088222;STAT2,4,6:-0.0137567492015;RXR{A,B,G}:-0.0366573134712;GCM1,2:-0.0387176393756;PRRX1,2:-0.0415713563127;FOXM1:-0.0589695056579;NANOG:-0.0767890609723;SRF:-0.0932427447405;PATZ1:-0.0950428905318;CEBPA,B_DDIT3:-0.0998751808149;E2F1..5:-0.101375265703;OCT4_SOX2{dimer}:-0.115654974709;ZFP161:-0.118122162095;HLF:-0.121042164473;MTE{core}:-0.139187734511;KLF4:-0.150059458751;MED-1{core}:-0.172946101861;TAL1_TCF{3,4,12}:-0.181101409734;NFE2L1:-0.190522334098;ETS1,2:-0.229153012034;RFX1:-0.258507584587;ZNF143:-0.266738306121;GATA6:-0.285246782406;ARID5B:-0.288703382762;MYB:-0.304932280069;NHLH1,2:-0.315010184583;MYBL2:-0.332267923996;PDX1:-0.3573594364;EN1,2:-0.358402256489;XBP1:-0.376132883214;SREBF1,2:-0.377378175224;CUX2:-0.387359545653;ATF2:-0.388121191241;RUNX1..3:-0.393297198201;SMAD1..7,9:-0.401795582288;HMX1:-0.422180159316;HOX{A6,A7,B6,B7}:-0.425065621255;NKX3-1:-0.446514175486;SPIB:-0.46588143882;HES1:-0.484591110727;NKX6-1,2:-0.485557761693;EGR1..3:-0.491648137572;ALX1:-0.498908330171;ZNF384:-0.508402051918;TOPORS:-0.512017922262;FOXL1:-0.522953073294;MZF1:-0.535782160913;UFEwm:-0.548856972792;ATF4:-0.564334158702;IRF7:-0.575562697272;ATF6:-0.584898450184;PRDM1:-0.594298727772;RFX2..5_RFXANK_RFXAP:-0.594370983141;NFIL3:-0.596394449262;DBP:-0.608703909268;FOXA2:-0.623976687121;ZNF238:-0.628707654115;SOX5:-0.631962521506;SPI1:-0.637443103637;CDC5L:-0.640358129325;PITX1..3:-0.646425955382;HBP1_HMGB_SSRP1_UBTF:-0.649858435378;BREu{core}:-0.652045383767;NFATC1..3:-0.695892070161;FOX{D1,D2}:-0.70980890022;ALX4:-0.734508270776;NRF1:-0.748662404067;POU6F1:-0.768439677281;EVI1:-0.787859306462;NKX3-2:-0.789903107255;HOX{A4,D4}:-0.799951747783;TLX2:-0.808530103218;PAX2:-0.812693816882;FOXD3:-0.841782464666;CDX1,2,4:-0.842463921506;ATF5_CREB3:-0.885074925171;PAX6:-0.911019930069;IRF1,2:-0.95093687373;MYFfamily:-0.957787009967;FOXP1:-0.986136578595;ELK1,4_GABP{A,B1}:-0.986498873368;NKX2-2,8:-0.990806157035;YY1:-0.99642863608;HIF1A:-0.998367876091;PAX4:-1.06812186155;CREB1:-1.09347692154;STAT1,3:-1.10241747221;IKZF2:-1.11246307306;FOX{I1,J2}:-1.11757826089;AHR_ARNT_ARNT2:-1.12723082578;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16064704733;NANOG{mouse}:-1.18166158539;ELF1,2,4:-1.18746235852;PAX3,7:-1.19534740703;NKX2-1,4:-1.19735338828;MAFB:-1.20554111512;FOXO1,3,4:-1.20802124726;TGIF1:-1.22772278315;FOXP3:-1.23321003153;DMAP1_NCOR{1,2}_SMARC:-1.26715776784;HOXA9_MEIS1:-1.27501399475;AIRE:-1.30251423885;BPTF:-1.33513371825;HSF1,2:-1.33837151852;RBPJ:-1.35126165074;FOXN1:-1.37116456707;NFIX:-1.37436692614;HMGA1,2:-1.395141787;ZBTB16:-1.43169930389;GATA4:-1.68961348402 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11516-119H4;search_select_hide=table117:FF:11516-119H4 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Renal Cortical Epithelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11331 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11331
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11331
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.587 |
| 10 | 10 | 0.0666 |
| 100 | 100 | 0.813 |
| 101 | 101 | 0.0554 |
| 102 | 102 | 0.493 |
| 103 | 103 | 0.468 |
| 104 | 104 | 0.58 |
| 105 | 105 | 0.0708 |
| 106 | 106 | 0.0829 |
| 107 | 107 | 0.0148 |
| 108 | 108 | 0.493 |
| 109 | 109 | 0.217 |
| 11 | 11 | 0.663 |
| 110 | 110 | 0.681 |
| 111 | 111 | 0.993 |
| 112 | 112 | 0.808 |
| 113 | 113 | 0.442 |
| 114 | 114 | 0.095 |
| 115 | 115 | 0.958 |
| 116 | 116 | 0.846 |
| 117 | 117 | 0.427 |
| 118 | 118 | 0.988 |
| 119 | 119 | 0.168 |
| 12 | 12 | 0.76 |
| 120 | 120 | 0.541 |
| 121 | 121 | 0.959 |
| 122 | 122 | 0.155 |
| 123 | 123 | 0.0841 |
| 124 | 124 | 0.241 |
| 125 | 125 | 0.419 |
| 126 | 126 | 0.275 |
| 127 | 127 | 0.279 |
| 128 | 128 | 0.196 |
| 129 | 129 | 0.0194 |
| 13 | 13 | 0.381 |
| 130 | 130 | 0.492 |
| 131 | 131 | 0.423 |
| 132 | 132 | 0.18 |
| 133 | 133 | 0.147 |
| 134 | 134 | 0.668 |
| 135 | 135 | 0.788 |
| 136 | 136 | 0.757 |
| 137 | 137 | 0.0402 |
| 138 | 138 | 0.278 |
| 139 | 139 | 0.104 |
| 14 | 14 | 0.517 |
| 140 | 140 | 0.284 |
| 141 | 141 | 0.53 |
| 142 | 142 | 0.787 |
| 143 | 143 | 0.886 |
| 144 | 144 | 0.471 |
| 145 | 145 | 0.202 |
| 146 | 146 | 0.0191 |
| 147 | 147 | 0.582 |
| 148 | 148 | 0.0991 |
| 149 | 149 | 0.191 |
| 15 | 15 | 0.965 |
| 150 | 150 | 0.448 |
| 151 | 151 | 0.623 |
| 152 | 152 | 0.0488 |
| 153 | 153 | 0.202 |
| 154 | 154 | 0.165 |
| 155 | 155 | 0.945 |
| 156 | 156 | 0.0552 |
| 157 | 157 | 0.253 |
| 158 | 158 | 0.929 |
| 159 | 159 | 0.787 |
| 16 | 16 | 0.415 |
| 160 | 160 | 0.124 |
| 161 | 161 | 0.802 |
| 162 | 162 | 0.156 |
| 163 | 163 | 0.787 |
| 164 | 164 | 0.205 |
| 165 | 165 | 0.235 |
| 166 | 166 | 0.567 |
| 167 | 167 | 0.122 |
| 168 | 168 | 0.93 |
| 169 | 169 | 0.242 |
| 17 | 17 | 0.288 |
| 18 | 18 | 0.454 |
| 19 | 19 | 0.669 |
| 2 | 2 | 0.207 |
| 20 | 20 | 0.816 |
| 21 | 21 | 0.779 |
| 22 | 22 | 0.295 |
| 23 | 23 | 0.219 |
| 24 | 24 | 0.968 |
| 25 | 25 | 0.614 |
| 26 | 26 | 0.389 |
| 27 | 27 | 0.303 |
| 28 | 28 | 0.614 |
| 29 | 29 | 0.601 |
| 3 | 3 | 0.462 |
| 30 | 30 | 0.0338 |
| 31 | 31 | 0.431 |
| 32 | 32 | 0.495 |
| 33 | 33 | 0.214 |
| 34 | 34 | 0.233 |
| 35 | 35 | 0.161 |
| 36 | 36 | 0.902 |
| 37 | 37 | 0.671 |
| 38 | 38 | 0.399 |
| 39 | 39 | 0.205 |
| 4 | 4 | 0.124 |
| 40 | 40 | 0.00778 |
| 41 | 41 | 0.505 |
| 42 | 42 | 0.579 |
| 43 | 43 | 0.834 |
| 44 | 44 | 0.868 |
| 45 | 45 | 0.0817 |
| 46 | 46 | 0.675 |
| 47 | 47 | 0.977 |
| 48 | 48 | 0.779 |
| 49 | 49 | 0.984 |
| 5 | 5 | 0.521 |
| 50 | 50 | 0.243 |
| 51 | 51 | 0.491 |
| 52 | 52 | 0.316 |
| 53 | 53 | 0.569 |
| 54 | 54 | 0.417 |
| 55 | 55 | 0.134 |
| 56 | 56 | 0.313 |
| 57 | 57 | 0.94 |
| 58 | 58 | 0.395 |
| 59 | 59 | 0.114 |
| 6 | 6 | 0.218 |
| 60 | 60 | 0.403 |
| 61 | 61 | 0.366 |
| 62 | 62 | 0.247 |
| 63 | 63 | 0.301 |
| 64 | 64 | 0.549 |
| 65 | 65 | 0.0808 |
| 66 | 66 | 0.108 |
| 67 | 67 | 0.261 |
| 68 | 68 | 0.849 |
| 69 | 69 | 0.0428 |
| 7 | 7 | 0.984 |
| 70 | 70 | 0.958 |
| 71 | 71 | 0.249 |
| 72 | 72 | 0.809 |
| 73 | 73 | 0.0753 |
| 74 | 74 | 0.171 |
| 75 | 75 | 0.686 |
| 76 | 76 | 0.0708 |
| 77 | 77 | 0.00643 |
| 78 | 78 | 0.735 |
| 79 | 79 | 0.426 |
| 8 | 8 | 0.627 |
| 80 | 80 | 0.747 |
| 81 | 81 | 0.144 |
| 82 | 82 | 0.373 |
| 83 | 83 | 0.948 |
| 84 | 84 | 0.768 |
| 85 | 85 | 0.851 |
| 86 | 86 | 0.577 |
| 87 | 87 | 0.187 |
| 88 | 88 | 0.552 |
| 89 | 89 | 0.264 |
| 9 | 9 | 0.594 |
| 90 | 90 | 0.0315 |
| 91 | 91 | 0.895 |
| 92 | 92 | 0.707 |
| 93 | 93 | 0.253 |
| 94 | 94 | 0.677 |
| 95 | 95 | 0.63 |
| 96 | 96 | 0.795 |
| 97 | 97 | 0.691 |
| 98 | 98 | 0.783 |
| 99 | 99 | 0.0186 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11331
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000152 human renal cortical epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000152 (human renal cortical epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
