FF:10058-101H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005467 | ||
|accession_numbers=CAGE;DRX008754;DRR009626;DRZ001051;DRZ002436;DRZ012401;DRZ013786 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0003126,UBERON:0003127,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010058 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10058-101H4 | |id=FF:10058-101H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010058 | ||
|is_obsolete= | |||
|library_id=CNhs11766 | |||
|library_id_phase_based=2:CNhs11766 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10058 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10058 | |||
|name=trachea, fetal, donor1 | |name=trachea, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11766,LSID820,release009,COMPLETED | |profile_hcage=CNhs11766,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,1.05355748091422,0,-0.160318030086386,0.30059136907981,0.199174188580452,0.971793622871047,0,0,0,0.0325648091902353,0,0,0,0,0,0,0,0,0,0.147268358731382,0,0,0,0.0623597393457245,0,0.746387941011449,0,0,0.644463369992172,0,0,0,0,0,0,0,0,0,0,0,0,0.0667557069196166,0.476536320773966,0,0,0,0,0,0,0,-0.0242150211128343,0,0.0779042095720736,0,0,0,0.145828030173829,0,0.53915474259477,0,0,0.124154256583233,0.22149788379633,0,0,0,0,0,0,0,0.22149788379633,0,0,0,0,0,0,0,0.0471889849714857,0,0.150295684539905,0,0.124719478691449,0.0667339419739821,0,0.124719478691449,0.181491935254452,0.212710189894024,0,0.10061840000259,0.066272651879624,0.112294608623232,0,0.22149788379633,0.0623597393457245,0,0.202556017842103,0.740894722598278,0,0,0,0,0,0,0.124719478691449,0,0,0,0,0,0,0,0,0,0,0.252760400578948,0.124719478691449,0,0,0,-0.0302600288825648,0.124719478691449,0,0.183053537526337,0,0,0 | |||
|repeat_enrich_byname=0.0864646317662264,0.60140188521406,0,0,0.202556017842103,0.22149788379633,0,0.425420379788049,0.124719478691449,0,0.425420379788049,0,0.124719478691449,0.22149788379633,0,0,0.229357445488402,0,0.162060885085367,-0.0187956638320227,0.0623597393457245,0,0.111811863590444,0,0.30059136907981,0,0,0.124719478691449,0,0.124719478691449,0,0.124719478691449,0.394144676994188,0,0.97682083484382,0.22149788379633,0,0,0,0.0927027467587434,0.119948148889642,0,-0.0635091192513445,0.453920282869384,0,0,0,0.0829712642445124,-0.0575852454486947,0,0.10061840000259,0.0419993103680318,0.708426253670514,0.39322200386672,0.0832232634633147,0,0,0,0.147400549000122,0.316576040055301,0,0,0.274738543378657,0.303183039424819,0,0,1.47927314951513,0.124719478691449,0.243941006916903,0.183244274954262,0,0.126359864118964,0,0,0,0,0,0,0,0,0,0.0623597393457245,0,0.635910565095435,0.496174215272974,0,0.124719478691449,0.30059136907981,0.124719478691449,0.161371829593627,0,0.0894709223983549,0.262860947880808,0.0746843664911903,0.115063955076974,0.166078822790539,0.0546320560757421,0.45021525961724,0.252319577573666,0.271235078540808,0.0419731658962782,0.27801853041691,0.177493742040899,0.0427958631039881,0.181491935254452,0.227175129329953,0.109173248253868,-0.0108078971287147,0.0503959340415163,0.451978719832043,0.0255322009640808,0,0,0.22149788379633,0.137178312267315,0.105790174404564,0,0.26249027215038,0.0669289328566841,0.288455023743825,0.223316719853643,0.054897240804763,0.172769547448868,0.829452027125852,0.365726359055348,0.168318329297206,0.895172401519964,0.158269667842761,0.30059136907981,0.124719478691449,0.0952678163134475,0.292464651494328,0.0203209306586961,0,0.4694849604976,-0.0683442610773682,0.17310868124389,0.040037160837461,0.159832855784696,0.124719478691449,0.0126623659056853,-0.0151439492781921,0,0.124719478691449,0,0.124719478691449,0.425420379788049,-0.113347368789415,0.128825168539447,-0.232855561555545,0,0.0191801078046657,0,0.03687257543222,0.0706994713865077,-0.0665247136270916,0.0193271221855247,0.147796038665155,0.0558252229730567,0.080577318831395,-0.058031448493257,0.187181598542895,0.135600672740807,0.0998697385550151,0.066272651879624,0.0704214174959267,0.276109273313707,0.00285961960439707,0.366590931692446,0.155892501762236,1.1241240837487,0.124719478691449,0.0535310093750069,0.455351055645446,0.0855680142597564,0.141906583585414,0.170821859189739,0.256898107377881,0.56363328159322,0.315754668947386,0.0530496467989987,0.00387733682413749,0.303912085806267,0.662564627063816,-0.178124481217274,0.0711469019651143,0.0924860818013309,0.83769458530378,0.195370135338261,0.124719478691449,0.0681752303392277,0.668317311569613,0.371897460612113,0.342898885967054,0.486617561138229,0.0737207332148299,0,0.179173045426769,0.124719478691449,0,0.104173308568925,0.131999423826358,0,0.0457264678489624,-0.13266659343943,0.0319310626420807,0.0087484052565151,0.124719478691449,0,0.323552865823701,0,0.636147103837375,0.484345939619308,0.248929814800533,0.433774156955584,0.0472650275930541,0.177942651193023,0.71238221064318,0.112319928294827,0.22149788379633,0.0439701178311545,0.367475461590747,-0.024986869785747,0,0,0.175621310049172,0,0,0.183737730795374,0.367475461590747,0,0.124719478691449,0.0262366658128341,0,0,0.0542735929612755,0,0.161150063683446,0.681950618098572,0.0126421313742988,0.124719478691449,-0.222098763850568,0,0,0,0.56363328159322,0,0.124719478691449,0.0491113800630018,0,0.0632284983122713,0.214308513916983,0.00170206301502888,0,0,0,0.0912872656171513,0.151752059037272,-0.0785170834032746,0.22149788379633,0.168728662582178,0.124719478691449,0.0623597393457245,0,0,0.135356894007119,0,0,0.0623597393457245,0.0623597393457245,-0.057730457053664,-0.0212725097428892,0,0,0.110748941898165,1.11431398360581,0,0,0,0.200655723427659,0.101266516091076,0,0,-0.109665629439627,0,-0.00664663212492345,0.0431375991446077,0,0.0939954737855491,-0.362722494814834,0.0932289798617849,0,0,0.603196388097102,0,0,0.109368768901383,0,0.367475461590747,0.077359306280649,0,0,0,0,0,0,0.262221808374211,0,0,0.124719478691449,0,0,0,0,0,0,0,0,0.0760769355641366,-0.0922240566585104,0,0,0,0,0.522264543946753,0,0.124719478691449,0.250963906160846,0.0583220360959703,0,0,0.0647257013231708,0,0,0.22149788379633,0,0.0546410930690755,0.497827264153183,0,0,0,0.0639119404435609,0,0.53915474259477,0,0,0,0,1.27526993417248,0,0,0.199174188580452,0,0,0,0,0,0,0.0288523837982427,0.105319200283964,0,0,0,0,0,-0.123319086035448,-0.149782797549637,0,0,0,0,0,0.30059136907981,0,0.526060053065567,0,0.668317311569613,0,0,0.107613510087353,0,0,0,0.320623994998892,0,-0.160318030086386,1.05355748091422,0,0,0,0,0,0,0,0,0,0,0,0,0.124719478691449,0,0,0,0,0,0,0.088725805484668,0.124945352865381,0.131232380260391,0.56363328159322,0.182254494650518,0,0,0.130514514669229,0,0,0,0,0,0,0.118955260511378,0.0615818978333948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124719478691449,0,0,0,0,0,0,0.148879686990285,0,0,0,0,0,0,0,0.746387941011449,0,0,0.032686668890923,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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Trachea | |rna_catalog_number=Cat:RtHFN: Trachea | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.01624723413076e-218!GO:0005737;cytoplasm;3.72100969155438e-194!GO:0043226;organelle;7.54991970624329e-137!GO:0043229;intracellular organelle;1.83379067292755e-136!GO:0044444;cytoplasmic part;1.09586685214962e-123!GO:0043231;intracellular membrane-bound organelle;1.61184441076205e-111!GO:0043227;membrane-bound organelle;1.7764501014107e-111!GO:0005515;protein binding;1.87061564359176e-104!GO:0044422;organelle part;1.20558078832886e-100!GO:0044446;intracellular organelle part;4.26348669699825e-99!GO:0032991;macromolecular complex;5.54891194228848e-71!GO:0030529;ribonucleoprotein complex;1.57646069923806e-51!GO:0016043;cellular component organization and biogenesis;8.24126805399855e-47!GO:0043233;organelle lumen;5.18951546228778e-45!GO:0031974;membrane-enclosed lumen;5.18951546228778e-45!GO:0044238;primary metabolic process;6.75685791546457e-43!GO:0005739;mitochondrion;2.39273644635705e-42!GO:0043170;macromolecule metabolic process;3.00152895888035e-42!GO:0003723;RNA binding;8.98646453725096e-42!GO:0044237;cellular metabolic process;3.04819001354796e-41!GO:0019538;protein metabolic process;4.90203875552071e-40!GO:0031090;organelle membrane;6.00821999959463e-40!GO:0043234;protein complex;3.63601306747619e-39!GO:0044428;nuclear part;5.86721302276935e-38!GO:0044260;cellular macromolecule metabolic process;2.65582893622403e-34!GO:0005840;ribosome;2.3929182429213e-33!GO:0044267;cellular protein metabolic process;6.47830285807844e-33!GO:0043228;non-membrane-bound organelle;3.29258623073911e-32!GO:0043232;intracellular non-membrane-bound organelle;3.29258623073911e-32!GO:0044429;mitochondrial part;5.51984063112483e-32!GO:0033036;macromolecule localization;6.79649896413316e-32!GO:0005634;nucleus;7.65064769623336e-31!GO:0015031;protein transport;1.88361480240195e-30!GO:0031967;organelle envelope;2.47534159077731e-30!GO:0031975;envelope;4.1049807222826e-30!GO:0008104;protein localization;1.26173406049825e-29!GO:0003735;structural constituent of ribosome;1.86553639181963e-29!GO:0045184;establishment of protein localization;3.1269387348103e-29!GO:0005829;cytosol;3.84357460232462e-29!GO:0006412;translation;5.99663790764246e-29!GO:0046907;intracellular transport;1.78653403123004e-27!GO:0033279;ribosomal subunit;3.82411091803797e-26!GO:0016071;mRNA metabolic process;5.03209904871423e-26!GO:0009059;macromolecule biosynthetic process;1.7959254501134e-25!GO:0065003;macromolecular complex assembly;2.23967045687182e-25!GO:0022607;cellular component assembly;2.58122974164796e-25!GO:0008380;RNA splicing;9.17031965359263e-25!GO:0006396;RNA processing;9.062842114219e-24!GO:0031981;nuclear lumen;4.21274359485604e-23!GO:0008092;cytoskeletal protein binding;1.29539446295412e-22!GO:0006886;intracellular protein transport;1.96057298171362e-22!GO:0019866;organelle inner membrane;5.03527014128846e-22!GO:0005740;mitochondrial envelope;6.80949265585392e-22!GO:0031966;mitochondrial membrane;1.00320533523111e-21!GO:0009058;biosynthetic process;1.13605220445651e-21!GO:0006397;mRNA processing;1.40162983029305e-21!GO:0006996;organelle organization and biogenesis;1.31633629834834e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.58399143118431e-20!GO:0005743;mitochondrial inner membrane;1.5916417920039e-20!GO:0006119;oxidative phosphorylation;2.99429800275287e-19!GO:0044249;cellular biosynthetic process;3.47686290456673e-19!GO:0005783;endoplasmic reticulum;7.41771866511018e-19!GO:0005794;Golgi apparatus;1.07915650796938e-18!GO:0044445;cytosolic part;1.83647084633993e-18!GO:0043283;biopolymer metabolic process;4.71799939690361e-18!GO:0012505;endomembrane system;1.25872925672802e-17!GO:0051641;cellular localization;1.45566440033769e-17!GO:0051649;establishment of cellular localization;1.94158758816872e-17!GO:0048770;pigment granule;1.98239625019975e-17!GO:0042470;melanosome;1.98239625019975e-17!GO:0005681;spliceosome;6.86211897548967e-17!GO:0010467;gene expression;1.03758227639137e-16!GO:0005746;mitochondrial respiratory chain;1.30328394570024e-16!GO:0044455;mitochondrial membrane part;1.59718577666132e-16!GO:0015629;actin cytoskeleton;6.17064334150393e-16!GO:0008134;transcription factor binding;1.31069106105017e-15!GO:0005654;nucleoplasm;2.81688796750613e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.33290938565503e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.16181644713272e-14!GO:0003954;NADH dehydrogenase activity;1.16181644713272e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.16181644713272e-14!GO:0003779;actin binding;1.76631095016193e-14!GO:0016192;vesicle-mediated transport;2.40946411254123e-14!GO:0044449;contractile fiber part;2.90684941983444e-14!GO:0015935;small ribosomal subunit;5.32677052691021e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.32499095528788e-14!GO:0031980;mitochondrial lumen;1.35467573631848e-13!GO:0005759;mitochondrial matrix;1.35467573631848e-13!GO:0043292;contractile fiber;1.6789030689374e-13!GO:0048193;Golgi vesicle transport;3.34849065204362e-13!GO:0015934;large ribosomal subunit;3.58784709811879e-13!GO:0048523;negative regulation of cellular process;3.85473962501259e-13!GO:0022618;protein-RNA complex assembly;4.08525962531818e-13!GO:0000166;nucleotide binding;4.5454968205173e-13!GO:0006457;protein folding;5.72907997983679e-13!GO:0044451;nucleoplasm part;1.06794688659123e-12!GO:0044432;endoplasmic reticulum part;1.32600335334751e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.49435631632772e-12!GO:0045271;respiratory chain complex I;1.49435631632772e-12!GO:0005747;mitochondrial respiratory chain complex I;1.49435631632772e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.83050952587347e-12!GO:0044265;cellular macromolecule catabolic process;1.83050952587347e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.47185223641929e-12!GO:0019941;modification-dependent protein catabolic process;3.15295654907045e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.15295654907045e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.19137726497847e-12!GO:0042773;ATP synthesis coupled electron transport;3.19137726497847e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.64226429650135e-12!GO:0044257;cellular protein catabolic process;4.90272240499247e-12!GO:0030016;myofibril;6.58470450000044e-12!GO:0008135;translation factor activity, nucleic acid binding;7.93532873768204e-12!GO:0030029;actin filament-based process;9.05280304528851e-12!GO:0016462;pyrophosphatase activity;1.18470923605973e-11!GO:0048519;negative regulation of biological process;1.40131707342408e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.43380820272049e-11!GO:0030036;actin cytoskeleton organization and biogenesis;1.57175209763862e-11!GO:0006605;protein targeting;2.14259260050772e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;2.26608251129836e-11!GO:0017111;nucleoside-triphosphatase activity;2.97951727088922e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.25259385519598e-11!GO:0008307;structural constituent of muscle;3.68857661142265e-11!GO:0030163;protein catabolic process;6.18214363347108e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.88898664825408e-11!GO:0006512;ubiquitin cycle;1.03124506317778e-10!GO:0043285;biopolymer catabolic process;1.18617650926769e-10!GO:0006461;protein complex assembly;1.41962923162484e-10!GO:0005793;ER-Golgi intermediate compartment;1.43741690351346e-10!GO:0030017;sarcomere;1.47226305854332e-10!GO:0043412;biopolymer modification;2.18353024441943e-10!GO:0044420;extracellular matrix part;4.13572943880752e-10!GO:0000502;proteasome complex (sensu Eukaryota);5.07444987949119e-10!GO:0006366;transcription from RNA polymerase II promoter;5.14753310721466e-10!GO:0009057;macromolecule catabolic process;5.87462139856102e-10!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.06944036702443e-10!GO:0006464;protein modification process;6.17310231862952e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.62990619891824e-10!GO:0031982;vesicle;6.62990619891824e-10!GO:0031988;membrane-bound vesicle;8.48183870798954e-10!GO:0003712;transcription cofactor activity;1.2827387493338e-09!GO:0031410;cytoplasmic vesicle;1.32991787271713e-09!GO:0008565;protein transporter activity;1.35674066715845e-09!GO:0016023;cytoplasmic membrane-bound vesicle;1.38600277959933e-09!GO:0005788;endoplasmic reticulum lumen;1.47174041967712e-09!GO:0005856;cytoskeleton;1.58075848002902e-09!GO:0005635;nuclear envelope;2.06322723818072e-09!GO:0031965;nuclear membrane;3.1326541562459e-09!GO:0007010;cytoskeleton organization and biogenesis;3.63060688464808e-09!GO:0006913;nucleocytoplasmic transport;4.05740075548944e-09!GO:0032553;ribonucleotide binding;4.07303202162132e-09!GO:0032555;purine ribonucleotide binding;4.07303202162132e-09!GO:0051082;unfolded protein binding;6.41321159931107e-09!GO:0005581;collagen;6.48691949683696e-09!GO:0051186;cofactor metabolic process;7.17410125315335e-09!GO:0003743;translation initiation factor activity;7.17410125315335e-09!GO:0016874;ligase activity;7.2059705865478e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.34033223475458e-09!GO:0000375;RNA splicing, via transesterification reactions;8.34033223475458e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.34033223475458e-09!GO:0017076;purine nucleotide binding;8.3884330623951e-09!GO:0051169;nuclear transport;9.44255713585275e-09!GO:0016564;transcription repressor activity;1.04250905116128e-08!GO:0044248;cellular catabolic process;1.05393664782491e-08!GO:0005761;mitochondrial ribosome;1.25700529159462e-08!GO:0000313;organellar ribosome;1.25700529159462e-08!GO:0006446;regulation of translational initiation;1.29742182874494e-08!GO:0044431;Golgi apparatus part;1.32844794550541e-08!GO:0006413;translational initiation;1.57934875617048e-08!GO:0045333;cellular respiration;1.65513702505026e-08!GO:0043687;post-translational protein modification;3.01986374520555e-08!GO:0016604;nuclear body;3.33323779076106e-08!GO:0009055;electron carrier activity;4.04130168593326e-08!GO:0019829;cation-transporting ATPase activity;4.20569161936355e-08!GO:0012501;programmed cell death;5.40265614948166e-08!GO:0009060;aerobic respiration;5.47209079363989e-08!GO:0007517;muscle development;6.03513084288265e-08!GO:0006915;apoptosis;7.0751709999016e-08!GO:0005730;nucleolus;7.20077636649859e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.56029209685362e-08!GO:0031252;leading edge;1.28388980041532e-07!GO:0050789;regulation of biological process;1.49399549224628e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.51705377030826e-07!GO:0030120;vesicle coat;1.85240583777548e-07!GO:0030662;coated vesicle membrane;1.85240583777548e-07!GO:0016607;nuclear speck;2.29988719633676e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.6751008116027e-07!GO:0017038;protein import;3.12451910144612e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.57439676860904e-07!GO:0008639;small protein conjugating enzyme activity;3.76582570558478e-07!GO:0005789;endoplasmic reticulum membrane;4.30271320310811e-07!GO:0008219;cell death;4.57247574006229e-07!GO:0016265;death;4.57247574006229e-07!GO:0004842;ubiquitin-protein ligase activity;4.69533227357822e-07!GO:0006099;tricarboxylic acid cycle;6.37934454850365e-07!GO:0046356;acetyl-CoA catabolic process;6.37934454850365e-07!GO:0045786;negative regulation of progression through cell cycle;7.23897624222921e-07!GO:0016887;ATPase activity;7.72449659521698e-07!GO:0050794;regulation of cellular process;9.14156323766516e-07!GO:0000139;Golgi membrane;9.50410261408303e-07!GO:0006732;coenzyme metabolic process;1.19986547360018e-06!GO:0005578;proteinaceous extracellular matrix;1.22072856164968e-06!GO:0005524;ATP binding;1.24669321795312e-06!GO:0032559;adenyl ribonucleotide binding;1.26676410464829e-06!GO:0006793;phosphorus metabolic process;1.29246943687271e-06!GO:0006796;phosphate metabolic process;1.29246943687271e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.31859923609891e-06!GO:0048475;coated membrane;1.48127828722939e-06!GO:0030117;membrane coat;1.48127828722939e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.55762155799277e-06!GO:0005583;fibrillar collagen;1.6166065908088e-06!GO:0008361;regulation of cell size;1.84212843851404e-06!GO:0015986;ATP synthesis coupled proton transport;2.07401936571814e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.07401936571814e-06!GO:0016481;negative regulation of transcription;2.1237951903365e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.18506319185068e-06!GO:0016049;cell growth;2.29238280657655e-06!GO:0009109;coenzyme catabolic process;2.29238280657655e-06!GO:0006084;acetyl-CoA metabolic process;2.47970209081077e-06!GO:0030554;adenyl nucleotide binding;2.88892675523366e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.22438349712097e-06!GO:0045259;proton-transporting ATP synthase complex;3.77971382506907e-06!GO:0019787;small conjugating protein ligase activity;4.04731122676087e-06!GO:0031324;negative regulation of cellular metabolic process;4.1380359413086e-06!GO:0006606;protein import into nucleus;4.9109067108242e-06!GO:0007049;cell cycle;5.25684752603252e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.15567400496242e-06!GO:0044453;nuclear membrane part;6.34951459095543e-06!GO:0051187;cofactor catabolic process;6.70713859770959e-06!GO:0005798;Golgi-associated vesicle;7.03071497835042e-06!GO:0009892;negative regulation of metabolic process;7.71210737983936e-06!GO:0051246;regulation of protein metabolic process;7.87406556364466e-06!GO:0051170;nuclear import;8.73284743583882e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.61338225051038e-06!GO:0009144;purine nucleoside triphosphate metabolic process;9.61338225051038e-06!GO:0009141;nucleoside triphosphate metabolic process;1.03413037320328e-05!GO:0003714;transcription corepressor activity;1.04660685538631e-05!GO:0006259;DNA metabolic process;1.17569359821355e-05!GO:0016310;phosphorylation;1.25313519967245e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.26468597711525e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.38785924883264e-05!GO:0006163;purine nucleotide metabolic process;1.41036021973885e-05!GO:0016070;RNA metabolic process;1.42097861983225e-05!GO:0046034;ATP metabolic process;1.43819420165986e-05!GO:0042623;ATPase activity, coupled;1.55604450026201e-05!GO:0016044;membrane organization and biogenesis;1.67516676015053e-05!GO:0051789;response to protein stimulus;1.85283670251666e-05!GO:0006986;response to unfolded protein;1.85283670251666e-05!GO:0051128;regulation of cellular component organization and biogenesis;1.88186873260183e-05!GO:0009150;purine ribonucleotide metabolic process;1.91058320582935e-05!GO:0005768;endosome;1.97164645269568e-05!GO:0022890;inorganic cation transmembrane transporter activity;2.04405419463839e-05!GO:0005865;striated muscle thin filament;2.18897866262865e-05!GO:0042802;identical protein binding;2.37274123411833e-05!GO:0003676;nucleic acid binding;2.518062665294e-05!GO:0009056;catabolic process;3.00700981749159e-05!GO:0000074;regulation of progression through cell cycle;3.01483826522204e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.02202242243081e-05!GO:0019899;enzyme binding;3.34367768230544e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.40534514046714e-05!GO:0051726;regulation of cell cycle;3.59672451714499e-05!GO:0001558;regulation of cell growth;3.95652545038504e-05!GO:0005201;extracellular matrix structural constituent;4.2181450752616e-05!GO:0030133;transport vesicle;4.25580269946419e-05!GO:0009259;ribonucleotide metabolic process;4.35120488054068e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.41309864588033e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.41309864588033e-05!GO:0065007;biological regulation;5.11474849138762e-05!GO:0006916;anti-apoptosis;5.36334924023197e-05!GO:0043066;negative regulation of apoptosis;5.64479607397002e-05!GO:0043069;negative regulation of programmed cell death;5.72951978905861e-05!GO:0006754;ATP biosynthetic process;5.98693248360459e-05!GO:0006753;nucleoside phosphate metabolic process;5.98693248360459e-05!GO:0003924;GTPase activity;6.04273897638196e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.43540031085723e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.43540031085723e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;6.66487252089187e-05!GO:0006613;cotranslational protein targeting to membrane;7.05445556156871e-05!GO:0000151;ubiquitin ligase complex;7.25145739821086e-05!GO:0007264;small GTPase mediated signal transduction;7.49624129870486e-05!GO:0016881;acid-amino acid ligase activity;7.62840197549936e-05!GO:0048471;perinuclear region of cytoplasm;7.79044687390344e-05!GO:0005643;nuclear pore;8.88836511225798e-05!GO:0006941;striated muscle contraction;9.83161229988205e-05!GO:0045893;positive regulation of transcription, DNA-dependent;0.000101865469376611!GO:0003713;transcription coactivator activity;0.000110588432271079!GO:0006091;generation of precursor metabolites and energy;0.000112255960213196!GO:0000245;spliceosome assembly;0.000118538755816592!GO:0006164;purine nucleotide biosynthetic process;0.000127465308259008!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.000152189419380651!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000167320176705803!GO:0009152;purine ribonucleotide biosynthetic process;0.000178045981035912!GO:0005525;GTP binding;0.000179181211429264!GO:0031589;cell-substrate adhesion;0.000183813164887069!GO:0006323;DNA packaging;0.000187010704479573!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000191480410685763!GO:0045892;negative regulation of transcription, DNA-dependent;0.000196486234474941!GO:0042981;regulation of apoptosis;0.000218914625105542!GO:0016563;transcription activator activity;0.000227705236974193!GO:0001666;response to hypoxia;0.000236596308363709!GO:0005791;rough endoplasmic reticulum;0.000238218737973571!GO:0030027;lamellipodium;0.000242099916873538!GO:0030934;anchoring collagen;0.000250582837481538!GO:0005667;transcription factor complex;0.000254188812138575!GO:0045941;positive regulation of transcription;0.000260477228395994!GO:0032446;protein modification by small protein conjugation;0.000260477228395994!GO:0005839;proteasome core complex (sensu Eukaryota);0.000264632963909587!GO:0050657;nucleic acid transport;0.000313649863188832!GO:0051236;establishment of RNA localization;0.000313649863188832!GO:0050658;RNA transport;0.000313649863188832!GO:0005912;adherens junction;0.000341810815703693!GO:0007160;cell-matrix adhesion;0.000346795351069302!GO:0051427;hormone receptor binding;0.000352484192911091!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00035505171980388!GO:0016859;cis-trans isomerase activity;0.000356251216512888!GO:0007005;mitochondrion organization and biogenesis;0.000366453959398645!GO:0004576;oligosaccharyl transferase activity;0.000367842224437116!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000373963637039472!GO:0065002;intracellular protein transport across a membrane;0.000382027922229517!GO:0031674;I band;0.000382968735613021!GO:0043067;regulation of programmed cell death;0.000397804684695659!GO:0016567;protein ubiquitination;0.00039998577756558!GO:0006403;RNA localization;0.000407817766628067!GO:0007167;enzyme linked receptor protein signaling pathway;0.000410474643049528!GO:0005773;vacuole;0.00041138557061167!GO:0001726;ruffle;0.000435397493032941!GO:0033116;ER-Golgi intermediate compartment membrane;0.000451596011103411!GO:0006897;endocytosis;0.000480778087400026!GO:0010324;membrane invagination;0.000480778087400026!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000486036328556422!GO:0030867;rough endoplasmic reticulum membrane;0.000527726672855937!GO:0009260;ribonucleotide biosynthetic process;0.000527726672855937!GO:0065004;protein-DNA complex assembly;0.000537667188095409!GO:0008250;oligosaccharyl transferase complex;0.000541628254679005!GO:0019843;rRNA binding;0.000545350105466928!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000575245888334144!GO:0035257;nuclear hormone receptor binding;0.000614710251285335!GO:0040008;regulation of growth;0.000619357909279731!GO:0043566;structure-specific DNA binding;0.000645749605121838!GO:0030198;extracellular matrix organization and biogenesis;0.000669286451802245!GO:0005905;coated pit;0.000669286451802245!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000698094899855992!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000712353264730758!GO:0005762;mitochondrial large ribosomal subunit;0.000742605020203637!GO:0000315;organellar large ribosomal subunit;0.000742605020203637!GO:0022402;cell cycle process;0.000748470736881449!GO:0005769;early endosome;0.000753304994414836!GO:0031032;actomyosin structure organization and biogenesis;0.000757747839813439!GO:0008286;insulin receptor signaling pathway;0.000777129955900595!GO:0030031;cell projection biogenesis;0.000800715928543548!GO:0000902;cell morphogenesis;0.000811204749438397!GO:0032989;cellular structure morphogenesis;0.000811204749438397!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.000817283776942049!GO:0033043;regulation of organelle organization and biogenesis;0.000817283776942049!GO:0006333;chromatin assembly or disassembly;0.000830491075659008!GO:0048522;positive regulation of cellular process;0.00085395304931258!GO:0006818;hydrogen transport;0.00087375147672326!GO:0042254;ribosome biogenesis and assembly;0.000906542106280284!GO:0015992;proton transport;0.000916560599714785!GO:0003697;single-stranded DNA binding;0.000930971612850856!GO:0005593;FACIT collagen;0.000938591790042159!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000940725836144092!GO:0016529;sarcoplasmic reticulum;0.000944064942461984!GO:0016528;sarcoplasm;0.000944064942461984!GO:0006414;translational elongation;0.000944064942461984!GO:0044262;cellular carbohydrate metabolic process;0.000944064942461984!GO:0051188;cofactor biosynthetic process;0.000972515911352943!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000986909522023487!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000986909522023487!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000986909522023487!GO:0004298;threonine endopeptidase activity;0.00101040860608631!GO:0003012;muscle system process;0.00101040860608631!GO:0006936;muscle contraction;0.00101040860608631!GO:0032561;guanyl ribonucleotide binding;0.00102137128975997!GO:0019001;guanyl nucleotide binding;0.00102137128975997!GO:0046930;pore complex;0.00124387804741426!GO:0014706;striated muscle development;0.00133059355466375!GO:0030663;COPI coated vesicle membrane;0.00139706666722527!GO:0030126;COPI vesicle coat;0.00139706666722527!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00155193035186702!GO:0004812;aminoacyl-tRNA ligase activity;0.00155193035186702!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00155193035186702!GO:0001725;stress fiber;0.00160690162261717!GO:0032432;actin filament bundle;0.00160690162261717!GO:0051920;peroxiredoxin activity;0.00160690162261717!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00160690162261717!GO:0000323;lytic vacuole;0.00167183677381979!GO:0005764;lysosome;0.00167183677381979!GO:0009966;regulation of signal transduction;0.00171272438691871!GO:0008154;actin polymerization and/or depolymerization;0.00171944748344634!GO:0005048;signal sequence binding;0.00175815801756056!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00177204831387928!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00186247404802479!GO:0016197;endosome transport;0.00202232817804669!GO:0006891;intra-Golgi vesicle-mediated transport;0.0020690330121782!GO:0015630;microtubule cytoskeleton;0.00209338728738703!GO:0051276;chromosome organization and biogenesis;0.00209543022327039!GO:0007265;Ras protein signal transduction;0.00215421123999387!GO:0004386;helicase activity;0.00217897916024585!GO:0043623;cellular protein complex assembly;0.00229368657218356!GO:0005741;mitochondrial outer membrane;0.00229531466121731!GO:0030018;Z disc;0.002304160901229!GO:0043284;biopolymer biosynthetic process;0.002304160901229!GO:0006334;nucleosome assembly;0.002304160901229!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00250006623816219!GO:0051028;mRNA transport;0.00251037172097829!GO:0005859;muscle myosin complex;0.00254489467638978!GO:0030658;transport vesicle membrane;0.00269390092205669!GO:0051287;NAD binding;0.00270662455940138!GO:0005770;late endosome;0.00273852457362141!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00289296224413658!GO:0030134;ER to Golgi transport vesicle;0.00296176484906163!GO:0043021;ribonucleoprotein binding;0.00299860445424904!GO:0016853;isomerase activity;0.00300034515486815!GO:0030832;regulation of actin filament length;0.00300034515486815!GO:0003724;RNA helicase activity;0.00305162315913391!GO:0005083;small GTPase regulator activity;0.00307760819310674!GO:0000785;chromatin;0.00312221853363578!GO:0005885;Arp2/3 protein complex;0.00315265967455797!GO:0043038;amino acid activation;0.00317325433109504!GO:0006418;tRNA aminoacylation for protein translation;0.00317325433109504!GO:0043039;tRNA aminoacylation;0.00317325433109504!GO:0006752;group transfer coenzyme metabolic process;0.00323440100408339!GO:0003746;translation elongation factor activity;0.00323440100408339!GO:0035258;steroid hormone receptor binding;0.00327327817745244!GO:0019867;outer membrane;0.0032928047019822!GO:0031968;organelle outer membrane;0.00335881199534974!GO:0032535;regulation of cellular component size;0.00338137460490961!GO:0008026;ATP-dependent helicase activity;0.00338137460490961!GO:0030127;COPII vesicle coat;0.00338226259598358!GO:0012507;ER to Golgi transport vesicle membrane;0.00338226259598358!GO:0005523;tropomyosin binding;0.00339302262097887!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00350034054781805!GO:0015002;heme-copper terminal oxidase activity;0.00350034054781805!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00350034054781805!GO:0004129;cytochrome-c oxidase activity;0.00350034054781805!GO:0030137;COPI-coated vesicle;0.00352419143530072!GO:0030199;collagen fibril organization;0.00354993583995335!GO:0044440;endosomal part;0.0035780155543982!GO:0010008;endosome membrane;0.0035780155543982!GO:0006612;protein targeting to membrane;0.00369967665384952!GO:0009117;nucleotide metabolic process;0.00377135442564492!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.004006602206428!GO:0015399;primary active transmembrane transporter activity;0.004006602206428!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00403836473761018!GO:0048518;positive regulation of biological process;0.00448797509392071!GO:0006402;mRNA catabolic process;0.00457924845792487!GO:0051252;regulation of RNA metabolic process;0.00483080619848318!GO:0018196;peptidyl-asparagine modification;0.00484984650550566!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00484984650550566!GO:0005604;basement membrane;0.00484984650550566!GO:0030132;clathrin coat of coated pit;0.00495736712309007!GO:0007243;protein kinase cascade;0.00495736712309007!GO:0008654;phospholipid biosynthetic process;0.00498259452756001!GO:0043488;regulation of mRNA stability;0.00506233248611638!GO:0043487;regulation of RNA stability;0.00506233248611638!GO:0031497;chromatin assembly;0.00529121570532611!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00531773086285569!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00532333505994443!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00532333505994443!GO:0016460;myosin II complex;0.00544439312654653!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00554419811308959!GO:0030041;actin filament polymerization;0.00554419811308959!GO:0030659;cytoplasmic vesicle membrane;0.00558875662591656!GO:0030118;clathrin coat;0.00559265798313594!GO:0012506;vesicle membrane;0.00588327740646984!GO:0016491;oxidoreductase activity;0.00605048709406018!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00605048709406018!GO:0051674;localization of cell;0.00610334218098531!GO:0006928;cell motility;0.00610334218098531!GO:0006979;response to oxidative stress;0.00658948241548865!GO:0006937;regulation of muscle contraction;0.00674804876300696!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0069248095189871!GO:0005586;collagen type III;0.00706006734668698!GO:0007050;cell cycle arrest;0.00747405059961795!GO:0030660;Golgi-associated vesicle membrane;0.00748067940560556!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00751788226147533!GO:0003729;mRNA binding;0.00771654214678577!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00778956325149755!GO:0009108;coenzyme biosynthetic process;0.00783298716023967!GO:0051087;chaperone binding;0.00806081931046086!GO:0016568;chromatin modification;0.00816394059773426!GO:0001944;vasculature development;0.00838858787331426!GO:0005938;cell cortex;0.00869228655153963!GO:0003690;double-stranded DNA binding;0.00891681644297658!GO:0015631;tubulin binding;0.00902961267661594!GO:0000314;organellar small ribosomal subunit;0.0090834074044376!GO:0005763;mitochondrial small ribosomal subunit;0.0090834074044376!GO:0051270;regulation of cell motility;0.00925751872738799!GO:0045454;cell redox homeostasis;0.00925751872738799!GO:0045445;myoblast differentiation;0.00971028485566769!GO:0055001;muscle cell development;0.00997230850148685!GO:0030239;myofibril assembly;0.00997230850148685!GO:0055002;striated muscle cell development;0.00997230850148685!GO:0048500;signal recognition particle;0.00997230850148685!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00997230850148685!GO:0016584;nucleosome positioning;0.0104164246891929!GO:0017166;vinculin binding;0.0105502451182858!GO:0044433;cytoplasmic vesicle part;0.0106347905727599!GO:0051101;regulation of DNA binding;0.0106347905727599!GO:0030518;steroid hormone receptor signaling pathway;0.0107794254598067!GO:0005861;troponin complex;0.0107794254598067!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.011218005314169!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0113084490498344!GO:0001568;blood vessel development;0.0115528386994579!GO:0033673;negative regulation of kinase activity;0.0116721559847652!GO:0006469;negative regulation of protein kinase activity;0.0116721559847652!GO:0043492;ATPase activity, coupled to movement of substances;0.0117338156296746!GO:0008139;nuclear localization sequence binding;0.0118224371260886!GO:0016281;eukaryotic translation initiation factor 4F complex;0.012091630226221!GO:0006892;post-Golgi vesicle-mediated transport;0.012210066852101!GO:0045045;secretory pathway;0.0122111481437309!GO:0006950;response to stress;0.012468875244595!GO:0048468;cell development;0.012468875244595!GO:0003702;RNA polymerase II transcription factor activity;0.0128902790320231!GO:0001527;microfibril;0.0129845108478241!GO:0005913;cell-cell adherens junction;0.0130100893074892!GO:0006942;regulation of striated muscle contraction;0.0130958331914796!GO:0007519;skeletal muscle development;0.0131383156044722!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0135420944476057!GO:0006974;response to DNA damage stimulus;0.013953822846653!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.014402930719366!GO:0040011;locomotion;0.0144899574342253!GO:0051168;nuclear export;0.0147872851992258!GO:0030521;androgen receptor signaling pathway;0.0148378067955765!GO:0005862;muscle thin filament tropomyosin;0.0149637016469796!GO:0030055;cell-matrix junction;0.0150281525610018!GO:0040012;regulation of locomotion;0.0150943159508252!GO:0050811;GABA receptor binding;0.0159865369111359!GO:0051146;striated muscle cell differentiation;0.0159865369111359!GO:0007266;Rho protein signal transduction;0.0163339960927689!GO:0008186;RNA-dependent ATPase activity;0.0164547931419567!GO:0042692;muscle cell differentiation;0.0169337331190534!GO:0005585;collagen type II;0.0169596638190879!GO:0043034;costamere;0.0169596638190879!GO:0005924;cell-substrate adherens junction;0.0179522622906793!GO:0008287;protein serine/threonine phosphatase complex;0.0187977375098386!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0192502204949344!GO:0048154;S100 beta binding;0.019757985204473!GO:0006509;membrane protein ectodomain proteolysis;0.020145442363459!GO:0033619;membrane protein proteolysis;0.020145442363459!GO:0045792;negative regulation of cell size;0.0204504130461462!GO:0019904;protein domain specific binding;0.0207070763669701!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0207070763669701!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0207070763669701!GO:0045047;protein targeting to ER;0.0207070763669701!GO:0043681;protein import into mitochondrion;0.0208624803536895!GO:0005637;nuclear inner membrane;0.0212343412575633!GO:0016072;rRNA metabolic process;0.0214552405018282!GO:0030833;regulation of actin filament polymerization;0.0214552405018282!GO:0048741;skeletal muscle fiber development;0.0214552405018282!GO:0048747;muscle fiber development;0.0214552405018282!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0215266347259964!GO:0000059;protein import into nucleus, docking;0.0215266347259964!GO:0009081;branched chain family amino acid metabolic process;0.0219055203814794!GO:0042805;actinin binding;0.0223302904256472!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0229184966881878!GO:0022415;viral reproductive process;0.0229266542153408!GO:0030308;negative regulation of cell growth;0.0231013325812065!GO:0048041;focal adhesion formation;0.0231258726384005!GO:0016740;transferase activity;0.0232780491819949!GO:0048306;calcium-dependent protein binding;0.0234195182534424!GO:0051348;negative regulation of transferase activity;0.0234411339305357!GO:0006607;NLS-bearing substrate import into nucleus;0.0234717631218642!GO:0017022;myosin binding;0.0237084747586275!GO:0030100;regulation of endocytosis;0.0249157296967889!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0255004690300446!GO:0044430;cytoskeletal part;0.0255481202431077!GO:0005159;insulin-like growth factor receptor binding;0.0256138745252008!GO:0031901;early endosome membrane;0.0259528196412971!GO:0031625;ubiquitin protein ligase binding;0.0260382197331964!GO:0005518;collagen binding;0.0260677091595555!GO:0006839;mitochondrial transport;0.026180953141462!GO:0045947;negative regulation of translational initiation;0.0266654806354076!GO:0031072;heat shock protein binding;0.0269214978312556!GO:0030666;endocytic vesicle membrane;0.0270124401791296!GO:0006364;rRNA processing;0.0276885035290859!GO:0005584;collagen type I;0.0276885035290859!GO:0008147;structural constituent of bone;0.0277843699853757!GO:0048487;beta-tubulin binding;0.0277843699853757!GO:0046314;phosphocreatine biosynthetic process;0.0281591191873607!GO:0006603;phosphocreatine metabolic process;0.0281591191873607!GO:0004197;cysteine-type endopeptidase activity;0.0281813175788424!GO:0006401;RNA catabolic process;0.0282119718565029!GO:0004860;protein kinase inhibitor activity;0.0289015559212317!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0296121435943728!GO:0005100;Rho GTPase activator activity;0.0302920674212881!GO:0031628;opioid receptor binding;0.030553602111456!GO:0031852;mu-type opioid receptor binding;0.030553602111456!GO:0008312;7S RNA binding;0.0309563552603429!GO:0005813;centrosome;0.0312858818128021!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0316355258062227!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0318843909368169!GO:0019838;growth factor binding;0.0321041107330386!GO:0050681;androgen receptor binding;0.032116804283402!GO:0032940;secretion by cell;0.0321178921779495!GO:0005684;U2-dependent spliceosome;0.0323075616325442!GO:0033017;sarcoplasmic reticulum membrane;0.0333011853950731!GO:0031529;ruffle organization and biogenesis;0.034525634638791!GO:0030032;lamellipodium biogenesis;0.0345375516101159!GO:0030218;erythrocyte differentiation;0.0346349160893701!GO:0046983;protein dimerization activity;0.0349937639832503!GO:0009719;response to endogenous stimulus;0.0355048686619374!GO:0030140;trans-Golgi network transport vesicle;0.0357445311585406!GO:0030695;GTPase regulator activity;0.0362096841648598!GO:0048514;blood vessel morphogenesis;0.0372783832575137!GO:0003756;protein disulfide isomerase activity;0.0372783832575137!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0372783832575137!GO:0006635;fatty acid beta-oxidation;0.0377115534030935!GO:0004004;ATP-dependent RNA helicase activity;0.0381649161706663!GO:0016363;nuclear matrix;0.0384734322602863!GO:0030176;integral to endoplasmic reticulum membrane;0.0384816543090399!GO:0045663;positive regulation of myoblast differentiation;0.0387029915335512!GO:0030125;clathrin vesicle coat;0.0391210237380077!GO:0030665;clathrin coated vesicle membrane;0.0391210237380077!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0394390820316969!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0397299307197254!GO:0043022;ribosome binding;0.0402565641860483!GO:0030119;AP-type membrane coat adaptor complex;0.0403725733580725!GO:0035035;histone acetyltransferase binding;0.0417974157256891!GO:0005594;collagen type IX;0.0424046314879189!GO:0030135;coated vesicle;0.0424550653417384!GO:0051540;metal cluster binding;0.0424891011712949!GO:0051536;iron-sulfur cluster binding;0.0424891011712949!GO:0007006;mitochondrial membrane organization and biogenesis;0.0429742955090741!GO:0030911;TPR domain binding;0.0440575158745362!GO:0009225;nucleotide-sugar metabolic process;0.044994536952683!GO:0051259;protein oligomerization;0.0452239335651061!GO:0030139;endocytic vesicle;0.0458364920450583!GO:0051260;protein homooligomerization;0.0458364920450583!GO:0005869;dynactin complex;0.0458364920450583!GO:0051098;regulation of binding;0.0459210082783877!GO:0018106;peptidyl-histidine phosphorylation;0.0459210082783877!GO:0003711;transcription elongation regulator activity;0.0469401349550102!GO:0004111;creatine kinase activity;0.0473740149497046!GO:0006595;polyamine metabolic process;0.0483677799948461!GO:0008234;cysteine-type peptidase activity;0.0484550641975452!GO:0030522;intracellular receptor-mediated signaling pathway;0.0486311248224575 | |||
|sample_id=10058 | |sample_id=10058 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=trachea | |sample_tissue=trachea | ||
|top_motifs=ZNF384:3.37911398153;TBP:3.33213708954;MEF2{A,B,C,D}:3.13503764265;SOX5:2.8565356611;MYBL2:2.63113227017;TAL1_TCF{3,4,12}:2.43662599355;IKZF2:2.37208824102;FOXL1:2.2813696425;SPZ1:2.23478172335;MAZ:2.15544766394;HMGA1,2:2.05051182377;GCM1,2:2.02954183912;GLI1..3:1.96940907822;LMO2:1.95942733428;EP300:1.91367094479;ZIC1..3:1.8815383318;AIRE:1.85854818792;HIC1:1.82414837678;GATA4:1.75684806398;IKZF1:1.70014120709;ATF6:1.69581337396;HOX{A4,D4}:1.6849171162;NR1H4:1.6695324384;PATZ1:1.64091088397;TFAP2{A,C}:1.61487190934;BPTF:1.61317965476;TOPORS:1.58929931504;KLF4:1.58803684553;DBP:1.56444159108;XBP1:1.55882441565;SMAD1..7,9:1.5553612227;MZF1:1.54559275065;FOXP1:1.53885154464;TLX1..3_NFIC{dimer}:1.49552241165;RXRA_VDR{dimer}:1.47472327454;SP1:1.46891818563;NFATC1..3:1.46498381416;TLX2:1.43460585069;NR6A1:1.42295138086;MED-1{core}:1.41584823782;PRDM1:1.3935144786;POU6F1:1.39215844227;TBX4,5:1.38114870111;SNAI1..3:1.38110077579;TFCP2:1.37113739537;GTF2I:1.36056944489;FOXO1,3,4:1.35039762269;ESR1:1.34438033449;EGR1..3:1.26478251629;TGIF1:1.2508099307;NKX2-1,4:1.21685578984;TFAP4:1.21588548138;ZNF238:1.21514365375;MYFfamily:1.19081728231;FOXM1:1.1789191772;FOXA2:1.16617950246;TEAD1:1.16123088489;GFI1B:1.13556848853;PAX5:1.13402177345;SRF:1.12987534638;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.10302017333;POU3F1..4:1.1006406376;FOX{D1,D2}:1.0785687995;TFAP2B:1.07314066282;ZNF423:1.05319742342;MTF1:1.02713468936;FOXD3:1.02558575533;ATF2:1.01791908987;LHX3,4:1.01488586108;CDC5L:1.00125202731;RBPJ:0.996944665513;PAX6:0.929518960811;NKX3-2:0.929295801253;BREu{core}:0.928147915681;GTF2A1,2:0.911499108816;NKX3-1:0.896123312115;RREB1:0.881445259997;NR5A1,2:0.845836348974;RFX2..5_RFXANK_RFXAP:0.832521726715;XCPE1{core}:0.82477810927;ZEB1:0.824417085492;MYOD1:0.822700537179;MTE{core}:0.819907540486;NKX2-3_NKX2-5:0.811569277739;HMX1:0.795095750833;AR:0.793400008741;RFX1:0.767878194767;UFEwm:0.735878837468;NHLH1,2:0.722808754327;CDX1,2,4:0.715169266247;ZBTB16:0.685613776616;SOX2:0.68460400754;IRF7:0.683123488934;CUX2:0.676075355244;PITX1..3:0.673289265316;HOX{A6,A7,B6,B7}:0.663572515927;T:0.634181631323;POU5F1:0.568675321468;PBX1:0.558334239704;ALX4:0.548336043739;HSF1,2:0.548178254908;POU1F1:0.541500693428;MAFB:0.532110411176;NKX6-1,2:0.527392813563;VSX1,2:0.513849138997;GZF1:0.460515674176;RORA:0.445021225829;ZFP161:0.434123569573;FOXQ1:0.431221027115;REST:0.424964734931;STAT2,4,6:0.406174227011;ZNF148:0.371083527646;GATA6:0.365201288121;SOX{8,9,10}:0.362044844861;GFI1:0.355011619209;NR3C1:0.323309177561;TEF:0.297527422453;FOXN1:0.263655986751;FOX{F1,F2,J1}:0.258174663954;HAND1,2:0.244136771492;SOX17:0.238157208402;HIF1A:0.16032463936;ALX1:0.145237897366;JUN:0.109452678426;TP53:0.0806845658233;NFIX:0.0685322919983;NANOG:0.0635219890316;EVI1:0.053708282759;NANOG{mouse}:0.0422687760758;ARID5B:0.0371821021905;HES1:0.0205911009494;ZBTB6:0.0033614982527;IRF1,2:-0.0312777530062;ETS1,2:-0.0664351213658;ESRRA:-0.0694522520736;NFIL3:-0.0779604149562;HBP1_HMGB_SSRP1_UBTF:-0.117706668405;NFE2L1:-0.14564825856;HOX{A5,B5}:-0.149544317826;EBF1:-0.153084569241;FOXP3:-0.173398890688;LEF1_TCF7_TCF7L1,2:-0.205280509099;PAX4:-0.214839546699;RXR{A,B,G}:-0.227579202714;PAX1,9:-0.233677171485;YY1:-0.235205460457;ZNF143:-0.238197166053;PDX1:-0.24460794687;FOX{I1,J2}:-0.251030656705;STAT1,3:-0.25189224256;STAT5{A,B}:-0.277061856536;HNF1A:-0.279757787543;DMAP1_NCOR{1,2}_SMARC:-0.330849482926;CREB1:-0.337688299097;SPI1:-0.375585054685;ELF1,2,4:-0.425512548963;EN1,2:-0.462220033854;ATF4:-0.490246360398;SREBF1,2:-0.492102713404;HNF4A_NR2F1,2:-0.499858573789;NKX2-2,8:-0.505101741067;SPIB:-0.534132209612;ADNP_IRX_SIX_ZHX:-0.53617083546;NFY{A,B,C}:-0.549528679346;PAX2:-0.568623504601;FOSL2:-0.570955126351;CEBPA,B_DDIT3:-0.581804358359;TFDP1:-0.608191016443;NFKB1_REL_RELA:-0.628283232209;E2F1..5:-0.633478767073;PRRX1,2:-0.636938058804;NRF1:-0.641667302953;PAX3,7:-0.65809284805;HLF:-0.672482904884;ATF5_CREB3:-0.691586563057;OCT4_SOX2{dimer}:-0.697414898851;ONECUT1,2:-0.705293181278;POU2F1..3:-0.727686287844;FOS_FOS{B,L1}_JUN{B,D}:-0.755360315454;AHR_ARNT_ARNT2:-0.782348362933;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.809641725;CRX:-0.8100543311;BACH2:-0.84075484586;RUNX1..3:-0.876438134273;HOXA9_MEIS1:-0.884618288991;bHLH_family:-0.94383682562;NFE2:-1.04384847733;NFE2L2:-1.05704194262;MYB:-1.33114768654;ELK1,4_GABP{A,B1}:-1.35543755196;PAX8:-1.41323233027;PPARG:-1.73482606635 | |top_motifs=ZNF384:3.37911398153;TBP:3.33213708954;MEF2{A,B,C,D}:3.13503764265;SOX5:2.8565356611;MYBL2:2.63113227017;TAL1_TCF{3,4,12}:2.43662599355;IKZF2:2.37208824102;FOXL1:2.2813696425;SPZ1:2.23478172335;MAZ:2.15544766394;HMGA1,2:2.05051182377;GCM1,2:2.02954183912;GLI1..3:1.96940907822;LMO2:1.95942733428;EP300:1.91367094479;ZIC1..3:1.8815383318;AIRE:1.85854818792;HIC1:1.82414837678;GATA4:1.75684806398;IKZF1:1.70014120709;ATF6:1.69581337396;HOX{A4,D4}:1.6849171162;NR1H4:1.6695324384;PATZ1:1.64091088397;TFAP2{A,C}:1.61487190934;BPTF:1.61317965476;TOPORS:1.58929931504;KLF4:1.58803684553;DBP:1.56444159108;XBP1:1.55882441565;SMAD1..7,9:1.5553612227;MZF1:1.54559275065;FOXP1:1.53885154464;TLX1..3_NFIC{dimer}:1.49552241165;RXRA_VDR{dimer}:1.47472327454;SP1:1.46891818563;NFATC1..3:1.46498381416;TLX2:1.43460585069;NR6A1:1.42295138086;MED-1{core}:1.41584823782;PRDM1:1.3935144786;POU6F1:1.39215844227;TBX4,5:1.38114870111;SNAI1..3:1.38110077579;TFCP2:1.37113739537;GTF2I:1.36056944489;FOXO1,3,4:1.35039762269;ESR1:1.34438033449;EGR1..3:1.26478251629;TGIF1:1.2508099307;NKX2-1,4:1.21685578984;TFAP4:1.21588548138;ZNF238:1.21514365375;MYFfamily:1.19081728231;FOXM1:1.1789191772;FOXA2:1.16617950246;TEAD1:1.16123088489;GFI1B:1.13556848853;PAX5:1.13402177345;SRF:1.12987534638;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.10302017333;POU3F1..4:1.1006406376;FOX{D1,D2}:1.0785687995;TFAP2B:1.07314066282;ZNF423:1.05319742342;MTF1:1.02713468936;FOXD3:1.02558575533;ATF2:1.01791908987;LHX3,4:1.01488586108;CDC5L:1.00125202731;RBPJ:0.996944665513;PAX6:0.929518960811;NKX3-2:0.929295801253;BREu{core}:0.928147915681;GTF2A1,2:0.911499108816;NKX3-1:0.896123312115;RREB1:0.881445259997;NR5A1,2:0.845836348974;RFX2..5_RFXANK_RFXAP:0.832521726715;XCPE1{core}:0.82477810927;ZEB1:0.824417085492;MYOD1:0.822700537179;MTE{core}:0.819907540486;NKX2-3_NKX2-5:0.811569277739;HMX1:0.795095750833;AR:0.793400008741;RFX1:0.767878194767;UFEwm:0.735878837468;NHLH1,2:0.722808754327;CDX1,2,4:0.715169266247;ZBTB16:0.685613776616;SOX2:0.68460400754;IRF7:0.683123488934;CUX2:0.676075355244;PITX1..3:0.673289265316;HOX{A6,A7,B6,B7}:0.663572515927;T:0.634181631323;POU5F1:0.568675321468;PBX1:0.558334239704;ALX4:0.548336043739;HSF1,2:0.548178254908;POU1F1:0.541500693428;MAFB:0.532110411176;NKX6-1,2:0.527392813563;VSX1,2:0.513849138997;GZF1:0.460515674176;RORA:0.445021225829;ZFP161:0.434123569573;FOXQ1:0.431221027115;REST:0.424964734931;STAT2,4,6:0.406174227011;ZNF148:0.371083527646;GATA6:0.365201288121;SOX{8,9,10}:0.362044844861;GFI1:0.355011619209;NR3C1:0.323309177561;TEF:0.297527422453;FOXN1:0.263655986751;FOX{F1,F2,J1}:0.258174663954;HAND1,2:0.244136771492;SOX17:0.238157208402;HIF1A:0.16032463936;ALX1:0.145237897366;JUN:0.109452678426;TP53:0.0806845658233;NFIX:0.0685322919983;NANOG:0.0635219890316;EVI1:0.053708282759;NANOG{mouse}:0.0422687760758;ARID5B:0.0371821021905;HES1:0.0205911009494;ZBTB6:0.0033614982527;IRF1,2:-0.0312777530062;ETS1,2:-0.0664351213658;ESRRA:-0.0694522520736;NFIL3:-0.0779604149562;HBP1_HMGB_SSRP1_UBTF:-0.117706668405;NFE2L1:-0.14564825856;HOX{A5,B5}:-0.149544317826;EBF1:-0.153084569241;FOXP3:-0.173398890688;LEF1_TCF7_TCF7L1,2:-0.205280509099;PAX4:-0.214839546699;RXR{A,B,G}:-0.227579202714;PAX1,9:-0.233677171485;YY1:-0.235205460457;ZNF143:-0.238197166053;PDX1:-0.24460794687;FOX{I1,J2}:-0.251030656705;STAT1,3:-0.25189224256;STAT5{A,B}:-0.277061856536;HNF1A:-0.279757787543;DMAP1_NCOR{1,2}_SMARC:-0.330849482926;CREB1:-0.337688299097;SPI1:-0.375585054685;ELF1,2,4:-0.425512548963;EN1,2:-0.462220033854;ATF4:-0.490246360398;SREBF1,2:-0.492102713404;HNF4A_NR2F1,2:-0.499858573789;NKX2-2,8:-0.505101741067;SPIB:-0.534132209612;ADNP_IRX_SIX_ZHX:-0.53617083546;NFY{A,B,C}:-0.549528679346;PAX2:-0.568623504601;FOSL2:-0.570955126351;CEBPA,B_DDIT3:-0.581804358359;TFDP1:-0.608191016443;NFKB1_REL_RELA:-0.628283232209;E2F1..5:-0.633478767073;PRRX1,2:-0.636938058804;NRF1:-0.641667302953;PAX3,7:-0.65809284805;HLF:-0.672482904884;ATF5_CREB3:-0.691586563057;OCT4_SOX2{dimer}:-0.697414898851;ONECUT1,2:-0.705293181278;POU2F1..3:-0.727686287844;FOS_FOS{B,L1}_JUN{B,D}:-0.755360315454;AHR_ARNT_ARNT2:-0.782348362933;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.809641725;CRX:-0.8100543311;BACH2:-0.84075484586;RUNX1..3:-0.876438134273;HOXA9_MEIS1:-0.884618288991;bHLH_family:-0.94383682562;NFE2:-1.04384847733;NFE2L2:-1.05704194262;MYB:-1.33114768654;ELK1,4_GABP{A,B1}:-1.35543755196;PAX8:-1.41323233027;PPARG:-1.73482606635 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10058-101H4;search_select_hide=table117:FF:10058-101H4 | |||
}} | }} | ||
Latest revision as of 12:18, 3 June 2020
| Name: | trachea, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11766 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11766
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11766
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0463 |
| 10 | 10 | 0.0424 |
| 100 | 100 | 0.683 |
| 101 | 101 | 0.728 |
| 102 | 102 | 0.41 |
| 103 | 103 | 0.102 |
| 104 | 104 | 0.623 |
| 105 | 105 | 0.819 |
| 106 | 106 | 0.977 |
| 107 | 107 | 0.133 |
| 108 | 108 | 0.47 |
| 109 | 109 | 0.00491 |
| 11 | 11 | 0.0924 |
| 110 | 110 | 0.127 |
| 111 | 111 | 0.0751 |
| 112 | 112 | 0.987 |
| 113 | 113 | 5.06755e-4 |
| 114 | 114 | 0.011 |
| 115 | 115 | 0.162 |
| 116 | 116 | 0.652 |
| 117 | 117 | 0.00824 |
| 118 | 118 | 0.0332 |
| 119 | 119 | 0.378 |
| 12 | 12 | 0.421 |
| 120 | 120 | 0.435 |
| 121 | 121 | 0.729 |
| 122 | 122 | 0.0994 |
| 123 | 123 | 0.522 |
| 124 | 124 | 0.161 |
| 125 | 125 | 0.38 |
| 126 | 126 | 0.532 |
| 127 | 127 | 0.198 |
| 128 | 128 | 0.612 |
| 129 | 129 | 0.289 |
| 13 | 13 | 0.185 |
| 130 | 130 | 0.948 |
| 131 | 131 | 0.601 |
| 132 | 132 | 0.0305 |
| 133 | 133 | 0.0985 |
| 134 | 134 | 0.606 |
| 135 | 135 | 0.655 |
| 136 | 136 | 0.178 |
| 137 | 137 | 0.344 |
| 138 | 138 | 0.363 |
| 139 | 139 | 0.295 |
| 14 | 14 | 0.722 |
| 140 | 140 | 0.753 |
| 141 | 141 | 0.521 |
| 142 | 142 | 0.701 |
| 143 | 143 | 0.00304 |
| 144 | 144 | 0.965 |
| 145 | 145 | 0.944 |
| 146 | 146 | 0.715 |
| 147 | 147 | 0.0937 |
| 148 | 148 | 0.302 |
| 149 | 149 | 0.773 |
| 15 | 15 | 0.0233 |
| 150 | 150 | 0.409 |
| 151 | 151 | 0.97 |
| 152 | 152 | 0.744 |
| 153 | 153 | 0.464 |
| 154 | 154 | 0.652 |
| 155 | 155 | 0.252 |
| 156 | 156 | 0.993 |
| 157 | 157 | 0.658 |
| 158 | 158 | 0.112 |
| 159 | 159 | 0.939 |
| 16 | 16 | 0.934 |
| 160 | 160 | 0.725 |
| 161 | 161 | 0.201 |
| 162 | 162 | 0.387 |
| 163 | 163 | 0.195 |
| 164 | 164 | 0.137 |
| 165 | 165 | 0.304 |
| 166 | 166 | 0.0823 |
| 167 | 167 | 0.0184 |
| 168 | 168 | 0.818 |
| 169 | 169 | 0.149 |
| 17 | 17 | 0.431 |
| 18 | 18 | 0.0254 |
| 19 | 19 | 0.504 |
| 2 | 2 | 0.133 |
| 20 | 20 | 0.11 |
| 21 | 21 | 0.588 |
| 22 | 22 | 0.482 |
| 23 | 23 | 0.812 |
| 24 | 24 | 0.175 |
| 25 | 25 | 0.464 |
| 26 | 26 | 0.0515 |
| 27 | 27 | 0.655 |
| 28 | 28 | 0.569 |
| 29 | 29 | 0.0204 |
| 3 | 3 | 0.188 |
| 30 | 30 | 0.08 |
| 31 | 31 | 0.94 |
| 32 | 32 | 1.75312e-4 |
| 33 | 33 | 0.194 |
| 34 | 34 | 0.644 |
| 35 | 35 | 0.147 |
| 36 | 36 | 0.03 |
| 37 | 37 | 0.0915 |
| 38 | 38 | 0.576 |
| 39 | 39 | 0.455 |
| 4 | 4 | 0.385 |
| 40 | 40 | 0.048 |
| 41 | 41 | 0.0635 |
| 42 | 42 | 0.202 |
| 43 | 43 | 0.0972 |
| 44 | 44 | 0.763 |
| 45 | 45 | 0.649 |
| 46 | 46 | 0.15 |
| 47 | 47 | 0.0636 |
| 48 | 48 | 0.201 |
| 49 | 49 | 0.0722 |
| 5 | 5 | 0.372 |
| 50 | 50 | 0.586 |
| 51 | 51 | 0.44 |
| 52 | 52 | 0.23 |
| 53 | 53 | 0.964 |
| 54 | 54 | 0.74 |
| 55 | 55 | 0.226 |
| 56 | 56 | 0.729 |
| 57 | 57 | 0.447 |
| 58 | 58 | 0.304 |
| 59 | 59 | 0.632 |
| 6 | 6 | 0.987 |
| 60 | 60 | 0.766 |
| 61 | 61 | 0.125 |
| 62 | 62 | 0.228 |
| 63 | 63 | 0.954 |
| 64 | 64 | 0.248 |
| 65 | 65 | 0.871 |
| 66 | 66 | 0.0116 |
| 67 | 67 | 0.368 |
| 68 | 68 | 0.526 |
| 69 | 69 | 0.538 |
| 7 | 7 | 0.452 |
| 70 | 70 | 0.122 |
| 71 | 71 | 0.0524 |
| 72 | 72 | 0.249 |
| 73 | 73 | 0.176 |
| 74 | 74 | 0.249 |
| 75 | 75 | 0.00862 |
| 76 | 76 | 0.159 |
| 77 | 77 | 0.613 |
| 78 | 78 | 0.169 |
| 79 | 79 | 0.623 |
| 8 | 8 | 0.2 |
| 80 | 80 | 0.37 |
| 81 | 81 | 0.409 |
| 82 | 82 | 0.603 |
| 83 | 83 | 0.828 |
| 84 | 84 | 0.841 |
| 85 | 85 | 0.772 |
| 86 | 86 | 0.315 |
| 87 | 87 | 0.0177 |
| 88 | 88 | 0.596 |
| 89 | 89 | 0.983 |
| 9 | 9 | 0.956 |
| 90 | 90 | 0.0555 |
| 91 | 91 | 0.301 |
| 92 | 92 | 0.967 |
| 93 | 93 | 0.331 |
| 94 | 94 | 0.0491 |
| 95 | 95 | 0.0047 |
| 96 | 96 | 0.248 |
| 97 | 97 | 0.939 |
| 98 | 98 | 0.337 |
| 99 | 99 | 0.199 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11766
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010058 human trachea - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0003126 (trachea)
0003127 (open tracheal system trachea)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010058 (human trachea - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
