FF:11836-124G9: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (23 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005599 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008558;DRR009430;DRZ000855;DRZ002240;DRZ012205;DRZ013590 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002119,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000272,FF:0000273 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor4.CNhs13094.11836-124G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor4.CNhs13094.11836-124G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor4.CNhs13094.11836-124G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor4.CNhs13094.11836-124G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor4.CNhs13094.11836-124G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11836-124G9 | |id=FF:11836-124G9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000273 | ||
|is_obsolete= | |||
|library_id=CNhs13094 | |||
|library_id_phase_based=2:CNhs13094 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11836 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11836 | |||
|name=mesenchymal precursor cell - ovarian cancer left ovary, donor4 | |name=mesenchymal precursor cell - ovarian cancer left ovary, donor4 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13094,LSID1001,release013,COMPLETED | |profile_hcage=CNhs13094,LSID1001,release013,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.075333129625851,0,0,0,0,0.190727779797047,0,0.210275471170983,-0.0385847588946932,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271366715746512,0,0,0,0,0,0.0527083629836441,0,0,0.0177096694728394,0,0,0,0,0,0,0,0,0,0,0,0,0.155939217101905,0,0.150666259251702,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.165319260944792,0,0,0.253702182670336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0847349060028859,0,0,-0.0698655564256556,0,0,0,-0.174693006102671,0.235628509811116,0.131155811093699,0.150666259251702,0,0,-0.0980353512377064,-0.0631440711750445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0210404642966102,0.150666259251702,0,0,0.0658833998235136,0.086219349958027,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0.150666259251702,0,0,0,0,0,0,0,0.150666259251702,0,0,-0.0965126160338628,0,-0.474086218752008,-0.143515142523472,0.075333129625851,0,0.112235844447522,0,0,0,0,0.542606015130536,0,0.262311622187397,0.487637603364498,0,-0.128119866952565,0,0.100253707662387,0.0472317326115156,0,0,0,0.056707848542,0.0455735789850258,0,0.242184303026592,-0.0683442610773682,0,0,0,0,0.259727893940003,0,0.029786775457961,0.0679460909282843,0.184675098038283,0.159951367359631,0.103861600359322,0,0,0,0.08770003738784,-0.135552846087586,0,0,0.149523155813394,0.22144092984295,0,0,1.22847874207542,0,-0.309979824268039,0.0542604002652095,0,0,0,0,0.150666259251702,0,0,0,0,0,0,0,0,0.293552343061997,-0.326988596678969,0.0831044637277094,0,0,0,-0.123427244585635,0,0,0.532510022930365,0.0814138333985723,0.042316017307589,-0.661883558459403,0,-0.151723467758212,0.00395941302083955,-0.637567397536971,-0.0724922119294809,0.114909772816258,0.521577686731738,0,0.0213105669157794,-0.151025228660296,-0.0285664406344385,-0.0698655564256556,-0.049553703302693,0.275136644960193,-0.174075969312611,0.150666259251702,0,0.184802695708094,-0.0900663913465108,0,-0.0082002227404414,-0.00247711111227605,-0.177412182716018,-0.03824076788096,-0.276152923543171,0.008209147200269,0.146658489531307,0.222779093730727,0.177810947557121,0,0.67749530616837,0.031678122640219,0.42468972609494,-0.0152658887924284,0.0348764246876061,0.0469726212448808,-0.353514550991282,0,-0.333311202559279,0.0823219981743334,0,-0.232431743572596,-0.00186954846872167,0,0,-0.42811097161971,0,0,0,0,0,-0.110855904035086,-0.114802416935227,-0.232855561555545,0,-0.080761645650366,0,-0.166130269258888,0,-0.30133865826759,-0.120814799453537,0,-0.141967545344534,0,-0.0066885266677728,0.108919227859106,-0.036595504951815,-0.0713489955083043,-0.0584468268118252,-0.242834330411234,-0.07313325129661,-0.174693006102671,0.0696330082817163,0,0.623432573806297,0,-0.107099680120584,-0.00442073573060586,-0.0884416843304136,-0.190573074376863,0.099990234645111,-0.173616679658693,0,-0.14705589142023,0,-0.288573871317183,-0.0527961481087426,-0.439289374580686,0.19819231133639,0,-0.0681446076942598,-0.152883537320258,0,0.0786614367114528,0.0426337652699142,0,0.200678726548794,-0.210058363148085,-0.211650427864589,0.248878311309991,0,0.215252097751528,0,0.262311622187397,0.315863608790002,0.115569772119044,0.262311622187397,0.114605013748455,0.102356492068189,-0.012823781845607,0.371666529929563,0.351045809883433,0,-0.294654528109292,0,0.150666259251702,-0.455261804566329,0,0.0552940719322851,-0.102660082235054,0,-0.108622809454255,0,0,-0.026861506713474,0,0.212985610511895,0,0,0.336835932847409,0.199752075791917,0,0,0.711559406281585,-0.00097401419088694,0,0,0,0,0,0,0,-0.186145537517547,-0.00378752033301483,0.42468972609494,0,0,0,0,0.351045809883433,0,0,0,0.351045809883433,0.568746700370078,0.0413382955714554,0.0276488435752814,0.131155811093699,0,0,0,0.135322407329958,-0.0525703028430221,0,0.0188035527540699,0.150666259251702,0,0,0,-0.0861409897892114,0,0,0,0,0.293315352829769,0.473165792134517,0,0,0,-0.126288142350089,0,0,0,0,-0.191179547366134,0,0,0.623413610999043,0,-0.0804057016496738,-0.0815818795468414,0,-0.124170743631296,-0.0282605597028214,0.229345323290389,0,0,0.0896986780935456,0,0.075333129625851,-0.0677358518699539,0,0,0,0,0,0,0,0.16351622354068,0,0.0479971097876413,0,0,0,0,0,0,0,0,0,0,0,0.148117008300627,0.0584422025931912,0.286986139366325,0,0,0,0,0,0,-0.0241060230789031,0.0544360369567455,0,0,0,0,0,0,0,0,0.071180075467294,0,0,0,0,0,0.165319260944792,0,0,0,0.150666259251702,-0.0771695177893864,0,0,0.210275471170983,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227726723847985,0.121551159857813,0,0,0,0,0,0,0,0.267772716924446,0,0,0,0,1.85490097264919,0,0,0,0.0458698744625452,0,0.190727779797047,0,0,0.351045809883433,0.075333129625851,0,0,0,0,0,0,0.150666259251702,0,0,0,0,0,0,0.075333129625851,0.175522904941716,0,0,0.336925896786781,0,0,0.0137114527502165,0,0,0.139978093056101,0,0,0,0,0,0,0.0439927055973238,0.102395636224462,0,0,0,0,0,0,0,0,0.150666259251702,0,0,0,0,0,0,0,0,0.150666259251702,0,0,0,0,0,0,0.0404750858207625,0,0,0,0,0,0,0,0.0527083629836441,0,0,-0.0920328098005262,0,0,0,0,0,0,0.124894986914601,0.276216964684351,-0.0294525045572088,0,0,0,0.189433229199793,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271366715746512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150666259251702,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.150666259251702,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150666259251702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082208736414103,0,0,0,0,0,0,0,0,0,0,0.122074188771035,0,0,0.102444184012647,0,0.266669177653406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0408882168339753,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,1.49517722679758,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974352015949281,0,0,-0.000404778496096506,0,0,0,0,0,0.075333129625851,0,0,0,0,0,0,0.289725630733307,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.37673826259269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0594777066319574,0.086219349958027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075333129625851,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0171853781619391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.832884728352203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156048651648192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0120905928085591,0,0,0,0,0,0,0,0,0,0.075333129625851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0420809285932203,0,0,0,0,0,0,0,0,0,0,0.150666259251702,0,0,0,0,0,0,0,0.075333129625851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165415223335039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180302283658952,0,0,0,0,0,0,0,0.0279702622547008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075333129625851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107416027576136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253702182670336,0,0.075333129625851,0,0,0,0.075333129625851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0177096694728394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.081217828572112,0.175522904941716,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.101707619011138,0,0,1.2029351199511,0,0.0861395735779245,-0.0506895140970477,0,0,0,0,0,0.191988559701182,0,0,0,0,0,0,0,0,0,0,0.0580016830241401,0,0,0.038184402517822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207565508041532,0,0.0968002817908447,0.0905629148424827,0,0,-0.0783205832929695,0.0715276080546498,0.150666259251702,0,0.00233332247650597,0,-0.174992895090299,-0.180523125370315,0,0,0,0,0,0,0,0,0,0,0,0.150666259251702,0,0,0.113423199710365,0.150666259251702,0,0,-0.0568589461625992,-0.118809376342868,0,0.256411146103292,0.150666259251702,0,-0.0781053106522872,0,0,0,0.0547068518781148 | |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=31.3992 | |rna_weight_ug=31.3992 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.11157130005172e-214!GO:0005737;cytoplasm;8.99325420692719e-194!GO:0043226;organelle;7.81626228050761e-163!GO:0043229;intracellular organelle;1.52539220160859e-162!GO:0043231;intracellular membrane-bound organelle;1.52539220160859e-162!GO:0043227;membrane-bound organelle;3.14334280501929e-162!GO:0044444;cytoplasmic part;3.73857344837908e-143!GO:0044422;organelle part;4.33860744605359e-132!GO:0044446;intracellular organelle part;1.16124699183979e-130!GO:0032991;macromolecular complex;1.58752504115976e-88!GO:0030529;ribonucleoprotein complex;8.96429783862735e-77!GO:0044238;primary metabolic process;1.51203005658864e-75!GO:0044237;cellular metabolic process;1.45905821559196e-74!GO:0005515;protein binding;9.97040956202884e-71!GO:0043170;macromolecule metabolic process;2.65866277568961e-68!GO:0043233;organelle lumen;2.01400828569129e-62!GO:0031974;membrane-enclosed lumen;2.01400828569129e-62!GO:0005739;mitochondrion;2.60744105217028e-61!GO:0003723;RNA binding;1.90647872347578e-58!GO:0044428;nuclear part;9.16994716762325e-56!GO:0031090;organelle membrane;9.8091340871334e-56!GO:0019538;protein metabolic process;2.0205667956307e-50!GO:0005634;nucleus;2.28808379168381e-50!GO:0005840;ribosome;1.82649235046679e-48!GO:0006412;translation;1.98499521698935e-46!GO:0015031;protein transport;5.62864852028615e-45!GO:0043234;protein complex;1.65467374080043e-44!GO:0044260;cellular macromolecule metabolic process;1.65693554194402e-44!GO:0033036;macromolecule localization;1.66232974141037e-44!GO:0003735;structural constituent of ribosome;6.58889109947804e-44!GO:0044267;cellular protein metabolic process;1.81143265780581e-43!GO:0044429;mitochondrial part;4.07163367500163e-43!GO:0016043;cellular component organization and biogenesis;7.7755489650791e-43!GO:0045184;establishment of protein localization;1.51437593754567e-42!GO:0008104;protein localization;1.03540985094089e-41!GO:0009058;biosynthetic process;2.06523904386252e-41!GO:0005829;cytosol;1.60299687145051e-40!GO:0009059;macromolecule biosynthetic process;1.53644816566553e-39!GO:0031967;organelle envelope;2.86341151998453e-39!GO:0031975;envelope;6.76611199538902e-39!GO:0006396;RNA processing;2.27486852181903e-38!GO:0033279;ribosomal subunit;7.20970380855645e-38!GO:0044249;cellular biosynthetic process;3.05715584077124e-37!GO:0046907;intracellular transport;3.10159079985363e-34!GO:0031981;nuclear lumen;8.10500730038533e-34!GO:0043283;biopolymer metabolic process;2.32905812480336e-30!GO:0016071;mRNA metabolic process;3.75017573554279e-30!GO:0006886;intracellular protein transport;3.87587561393189e-30!GO:0005740;mitochondrial envelope;2.49744645988624e-29!GO:0065003;macromolecular complex assembly;7.63740185929146e-29!GO:0008380;RNA splicing;1.12605216291517e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.09589809874563e-27!GO:0031966;mitochondrial membrane;1.84934519156694e-27!GO:0010467;gene expression;2.59384898742181e-27!GO:0006996;organelle organization and biogenesis;3.52314993548097e-26!GO:0006397;mRNA processing;4.9671953657734e-26!GO:0043228;non-membrane-bound organelle;5.15647333232594e-26!GO:0043232;intracellular non-membrane-bound organelle;5.15647333232594e-26!GO:0019866;organelle inner membrane;7.81714205949007e-26!GO:0022607;cellular component assembly;1.30185965628363e-25!GO:0005783;endoplasmic reticulum;2.70807136389671e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.90296793958631e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.36951738772262e-25!GO:0005743;mitochondrial inner membrane;1.64122223706467e-24!GO:0012505;endomembrane system;1.64122223706467e-24!GO:0006119;oxidative phosphorylation;1.74641300668586e-22!GO:0051649;establishment of cellular localization;2.20168871869006e-22!GO:0051641;cellular localization;2.20168871869006e-22!GO:0006457;protein folding;2.24223733967458e-22!GO:0044445;cytosolic part;2.94727165252012e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.01344715497297e-21!GO:0016462;pyrophosphatase activity;3.27702597752829e-21!GO:0044455;mitochondrial membrane part;3.64877280912732e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;4.3275556507763e-21!GO:0017111;nucleoside-triphosphatase activity;1.68299972990402e-20!GO:0005681;spliceosome;1.95393596865822e-20!GO:0044432;endoplasmic reticulum part;2.23801222056184e-20!GO:0015934;large ribosomal subunit;2.88146192700437e-20!GO:0005654;nucleoplasm;3.80488945489884e-20!GO:0006259;DNA metabolic process;3.97682910718149e-20!GO:0005794;Golgi apparatus;1.36244106075352e-19!GO:0048770;pigment granule;7.74383537817915e-19!GO:0042470;melanosome;7.74383537817915e-19!GO:0015935;small ribosomal subunit;1.47875438311983e-18!GO:0000166;nucleotide binding;4.65107354569606e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.22716512856502e-17!GO:0005746;mitochondrial respiratory chain;2.09346975958505e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.74158316101043e-16!GO:0031980;mitochondrial lumen;2.51710454203645e-16!GO:0005759;mitochondrial matrix;2.51710454203645e-16!GO:0007049;cell cycle;4.16702845971825e-16!GO:0044451;nucleoplasm part;4.37729194848328e-16!GO:0022618;protein-RNA complex assembly;5.54126680093561e-16!GO:0044265;cellular macromolecule catabolic process;9.23599520030144e-16!GO:0048193;Golgi vesicle transport;1.16449287065044e-15!GO:0006605;protein targeting;2.21456062877049e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.57214543959178e-15!GO:0003954;NADH dehydrogenase activity;2.57214543959178e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.57214543959178e-15!GO:0051186;cofactor metabolic process;1.06190180993953e-14!GO:0005730;nucleolus;1.12312913918901e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.46075153787441e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.46190913805513e-14!GO:0043285;biopolymer catabolic process;2.20495654153491e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;3.69409584746723e-14!GO:0008135;translation factor activity, nucleic acid binding;4.11465266100691e-14!GO:0051082;unfolded protein binding;4.248731021443e-14!GO:0009057;macromolecule catabolic process;4.51889272254096e-14!GO:0005789;endoplasmic reticulum membrane;6.25978159293823e-14!GO:0008134;transcription factor binding;6.70574762666221e-14!GO:0005761;mitochondrial ribosome;6.93002836922902e-14!GO:0000313;organellar ribosome;6.93002836922902e-14!GO:0019941;modification-dependent protein catabolic process;7.11800121780439e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.11800121780439e-14!GO:0044257;cellular protein catabolic process;7.43551575383051e-14!GO:0044248;cellular catabolic process;7.59705693417489e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.45409371674723e-14!GO:0016192;vesicle-mediated transport;1.05886356836146e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.57087609741255e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.69912587538801e-13!GO:0045271;respiratory chain complex I;1.69912587538801e-13!GO:0005747;mitochondrial respiratory chain complex I;1.69912587538801e-13!GO:0016874;ligase activity;1.90462608153043e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.10118929969527e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.24585475720989e-13!GO:0042773;ATP synthesis coupled electron transport;2.24585475720989e-13!GO:0032553;ribonucleotide binding;3.06549683936259e-13!GO:0032555;purine ribonucleotide binding;3.06549683936259e-13!GO:0017076;purine nucleotide binding;3.53357132300877e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.34178034017579e-13!GO:0006512;ubiquitin cycle;5.82074199946508e-13!GO:0003676;nucleic acid binding;6.4371458781693e-13!GO:0005793;ER-Golgi intermediate compartment;1.07048520500104e-12!GO:0030163;protein catabolic process;2.0919644919252e-12!GO:0022402;cell cycle process;2.98619026723259e-12!GO:0003743;translation initiation factor activity;5.63865566918785e-12!GO:0006732;coenzyme metabolic process;1.97763164592999e-11!GO:0009055;electron carrier activity;5.5121900900914e-11!GO:0048523;negative regulation of cellular process;8.23154860071514e-11!GO:0005635;nuclear envelope;1.05415700490497e-10!GO:0006413;translational initiation;1.11942574663119e-10!GO:0000278;mitotic cell cycle;1.16664200956809e-10!GO:0012501;programmed cell death;1.67019319906499e-10!GO:0043412;biopolymer modification;2.04058418729155e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.10841451337868e-10!GO:0000375;RNA splicing, via transesterification reactions;2.10841451337868e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.10841451337868e-10!GO:0006974;response to DNA damage stimulus;2.12848792090327e-10!GO:0042254;ribosome biogenesis and assembly;2.66599887459653e-10!GO:0006915;apoptosis;2.8391086136933e-10!GO:0005524;ATP binding;3.60020703067705e-10!GO:0031965;nuclear membrane;4.45457610824338e-10!GO:0006163;purine nucleotide metabolic process;4.45457610824338e-10!GO:0009259;ribonucleotide metabolic process;4.55913227658117e-10!GO:0008565;protein transporter activity;8.69213486442875e-10!GO:0032559;adenyl ribonucleotide binding;9.228706766228e-10!GO:0009150;purine ribonucleotide metabolic process;9.77729872604426e-10!GO:0000074;regulation of progression through cell cycle;1.01524696664106e-09!GO:0051726;regulation of cell cycle;1.05887014236611e-09!GO:0006164;purine nucleotide biosynthetic process;1.15618597252996e-09!GO:0030554;adenyl nucleotide binding;1.34092881004304e-09!GO:0003712;transcription cofactor activity;1.36928366924448e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.5548334726896e-09!GO:0006446;regulation of translational initiation;1.59709076564206e-09!GO:0016887;ATPase activity;1.59709076564206e-09!GO:0006913;nucleocytoplasmic transport;1.71025557989346e-09!GO:0016070;RNA metabolic process;1.90307718542269e-09!GO:0016604;nuclear body;2.073670068187e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.33298133563801e-09!GO:0006464;protein modification process;2.72380105270648e-09!GO:0003924;GTPase activity;2.91356347610514e-09!GO:0048519;negative regulation of biological process;3.14952866701014e-09!GO:0009260;ribonucleotide biosynthetic process;3.27171243753409e-09!GO:0051169;nuclear transport;3.60431627094095e-09!GO:0005788;endoplasmic reticulum lumen;4.21465259932743e-09!GO:0016491;oxidoreductase activity;4.50866319120399e-09!GO:0008219;cell death;4.50866319120399e-09!GO:0016265;death;4.50866319120399e-09!GO:0044453;nuclear membrane part;4.77753826229094e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.18703304374867e-09!GO:0009141;nucleoside triphosphate metabolic process;5.19458518480649e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.36182465073123e-09!GO:0008639;small protein conjugating enzyme activity;5.86146225560667e-09!GO:0044431;Golgi apparatus part;6.06846105275452e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;6.75921358753195e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.72062653350772e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.72062653350772e-09!GO:0051276;chromosome organization and biogenesis;7.78656651138637e-09!GO:0042623;ATPase activity, coupled;8.2745681242927e-09!GO:0006888;ER to Golgi vesicle-mediated transport;8.30953265142e-09!GO:0004842;ubiquitin-protein ligase activity;1.01428338974698e-08!GO:0019787;small conjugating protein ligase activity;1.23269619541515e-08!GO:0009056;catabolic process;1.46749252827805e-08!GO:0016787;hydrolase activity;1.57915916781321e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.59075517656194e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.61412625005452e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.61412625005452e-08!GO:0015986;ATP synthesis coupled proton transport;1.7863183281718e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.7863183281718e-08!GO:0030120;vesicle coat;1.93246742153452e-08!GO:0030662;coated vesicle membrane;1.93246742153452e-08!GO:0006323;DNA packaging;2.00168082915563e-08!GO:0017038;protein import;2.37621286168081e-08!GO:0006461;protein complex assembly;2.38080507576318e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.41427859213514e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.41427859213514e-08!GO:0005694;chromosome;2.51252825486249e-08!GO:0006281;DNA repair;2.88505372373355e-08!GO:0009060;aerobic respiration;3.07463912306631e-08!GO:0044427;chromosomal part;4.0986311935408e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.48738756253253e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.89345816355761e-08!GO:0005839;proteasome core complex (sensu Eukaryota);5.03876428020623e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.10708557872915e-08!GO:0019829;cation-transporting ATPase activity;6.22113708992065e-08!GO:0046034;ATP metabolic process;9.102210157549e-08!GO:0065004;protein-DNA complex assembly;9.46929480698985e-08!GO:0006399;tRNA metabolic process;1.09821449064378e-07!GO:0048475;coated membrane;1.20354929209483e-07!GO:0030117;membrane coat;1.20354929209483e-07!GO:0045333;cellular respiration;1.25933684071649e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.37883794915862e-07!GO:0005768;endosome;1.47639638142273e-07!GO:0051246;regulation of protein metabolic process;1.50850389118892e-07!GO:0000087;M phase of mitotic cell cycle;1.53933745298904e-07!GO:0016881;acid-amino acid ligase activity;1.67523218131585e-07!GO:0065002;intracellular protein transport across a membrane;1.81900092163625e-07!GO:0004386;helicase activity;1.84589521015931e-07!GO:0009719;response to endogenous stimulus;1.93676142665279e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.96319286985531e-07!GO:0007067;mitosis;2.06660238620521e-07!GO:0006333;chromatin assembly or disassembly;2.35949044816164e-07!GO:0006754;ATP biosynthetic process;2.45288757509062e-07!GO:0006753;nucleoside phosphate metabolic process;2.45288757509062e-07!GO:0051188;cofactor biosynthetic process;2.64580851514374e-07!GO:0043687;post-translational protein modification;2.78058565287603e-07!GO:0009117;nucleotide metabolic process;3.4862200465732e-07!GO:0000785;chromatin;4.63662818640843e-07!GO:0004298;threonine endopeptidase activity;4.66522508419792e-07!GO:0005643;nuclear pore;4.89384315300998e-07!GO:0016607;nuclear speck;5.01546489479446e-07!GO:0006334;nucleosome assembly;5.69592415959188e-07!GO:0000139;Golgi membrane;5.94168089789411e-07!GO:0043069;negative regulation of programmed cell death;5.99000173291807e-07!GO:0006366;transcription from RNA polymerase II promoter;6.05865517880086e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.0621217627181e-07!GO:0031988;membrane-bound vesicle;6.11824318225501e-07!GO:0006260;DNA replication;6.25268873490196e-07!GO:0042981;regulation of apoptosis;6.72107133907772e-07!GO:0043067;regulation of programmed cell death;7.03189443331933e-07!GO:0006916;anti-apoptosis;8.15139843713236e-07!GO:0006099;tricarboxylic acid cycle;8.47900882829771e-07!GO:0046356;acetyl-CoA catabolic process;8.47900882829771e-07!GO:0051187;cofactor catabolic process;9.47623887848517e-07!GO:0043066;negative regulation of apoptosis;1.01978247216655e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.05138015763763e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.05138015763763e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.05138015763763e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.1707104408638e-06!GO:0043038;amino acid activation;1.18439449386401e-06!GO:0006418;tRNA aminoacylation for protein translation;1.18439449386401e-06!GO:0043039;tRNA aminoacylation;1.18439449386401e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.36585573646561e-06!GO:0008026;ATP-dependent helicase activity;1.44359423438026e-06!GO:0006364;rRNA processing;1.65729947920299e-06!GO:0016853;isomerase activity;1.73846668497039e-06!GO:0003714;transcription corepressor activity;1.86689324667508e-06!GO:0051301;cell division;1.8715427906146e-06!GO:0007005;mitochondrion organization and biogenesis;1.99413184140767e-06!GO:0009109;coenzyme catabolic process;2.27438197140984e-06!GO:0005773;vacuole;2.59632396670312e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.83719665432226e-06!GO:0016072;rRNA metabolic process;3.046749580562e-06!GO:0031982;vesicle;3.13328234478056e-06!GO:0045259;proton-transporting ATP synthase complex;3.20624866356495e-06!GO:0006084;acetyl-CoA metabolic process;3.36123516066883e-06!GO:0045786;negative regulation of progression through cell cycle;3.46779048887668e-06!GO:0046930;pore complex;3.46779048887668e-06!GO:0031410;cytoplasmic vesicle;3.52699251129121e-06!GO:0031497;chromatin assembly;3.57452990307314e-06!GO:0050794;regulation of cellular process;3.62973021998685e-06!GO:0022403;cell cycle phase;3.64635476992401e-06!GO:0006091;generation of precursor metabolites and energy;4.39175015945431e-06!GO:0005525;GTP binding;4.39268826780622e-06!GO:0015630;microtubule cytoskeleton;4.58793236513774e-06!GO:0051170;nuclear import;4.92986639620034e-06!GO:0008654;phospholipid biosynthetic process;5.93782750627748e-06!GO:0043566;structure-specific DNA binding;6.16327607064008e-06!GO:0009108;coenzyme biosynthetic process;7.50577264094132e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.73830763242732e-06!GO:0031252;leading edge;8.39114391048207e-06!GO:0005798;Golgi-associated vesicle;8.44560474003149e-06!GO:0044440;endosomal part;8.81336197549997e-06!GO:0010008;endosome membrane;8.81336197549997e-06!GO:0016740;transferase activity;9.9608431232454e-06!GO:0006606;protein import into nucleus;1.04927909047608e-05!GO:0003697;single-stranded DNA binding;1.08918781189014e-05!GO:0016859;cis-trans isomerase activity;1.0964134494687e-05!GO:0032446;protein modification by small protein conjugation;1.17821334071904e-05!GO:0019867;outer membrane;1.18360410326234e-05!GO:0006752;group transfer coenzyme metabolic process;1.20906103466702e-05!GO:0006403;RNA localization;1.42470217434171e-05!GO:0006613;cotranslational protein targeting to membrane;1.43178854548866e-05!GO:0016564;transcription repressor activity;1.49348229256842e-05!GO:0016567;protein ubiquitination;1.577745393056e-05!GO:0031968;organelle outer membrane;1.69210972635799e-05!GO:0016779;nucleotidyltransferase activity;1.99641277876253e-05!GO:0000245;spliceosome assembly;2.08723207878017e-05!GO:0032561;guanyl ribonucleotide binding;2.08824253075861e-05!GO:0019001;guanyl nucleotide binding;2.08824253075861e-05!GO:0050657;nucleic acid transport;2.14842666503655e-05!GO:0051236;establishment of RNA localization;2.14842666503655e-05!GO:0050658;RNA transport;2.14842666503655e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.14842666503655e-05!GO:0005762;mitochondrial large ribosomal subunit;2.2490279142291e-05!GO:0000315;organellar large ribosomal subunit;2.2490279142291e-05!GO:0000323;lytic vacuole;2.37417005549375e-05!GO:0005764;lysosome;2.37417005549375e-05!GO:0030867;rough endoplasmic reticulum membrane;2.43267088964782e-05!GO:0031324;negative regulation of cellular metabolic process;2.90287420329906e-05!GO:0045454;cell redox homeostasis;3.33281669448556e-05!GO:0006793;phosphorus metabolic process;3.55077987746241e-05!GO:0006796;phosphate metabolic process;3.55077987746241e-05!GO:0005905;coated pit;3.91195970816979e-05!GO:0005770;late endosome;4.56928035769874e-05!GO:0051789;response to protein stimulus;5.49573097038092e-05!GO:0006986;response to unfolded protein;5.49573097038092e-05!GO:0016563;transcription activator activity;5.52325663073587e-05!GO:0005791;rough endoplasmic reticulum;6.29227474451156e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.30326880132604e-05!GO:0005048;signal sequence binding;6.57346257395063e-05!GO:0005741;mitochondrial outer membrane;7.61803511728642e-05!GO:0005813;centrosome;8.79808308360587e-05!GO:0000279;M phase;0.000108016718597989!GO:0016310;phosphorylation;0.000108624922425507!GO:0033116;ER-Golgi intermediate compartment membrane;0.00011037207626097!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00011227904955369!GO:0006612;protein targeting to membrane;0.00012016426152416!GO:0003724;RNA helicase activity;0.000120189756801408!GO:0009892;negative regulation of metabolic process;0.00012901355958354!GO:0005667;transcription factor complex;0.00013000542495983!GO:0000151;ubiquitin ligase complex;0.000137390817460033!GO:0005769;early endosome;0.000141448967398043!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000168618469805642!GO:0016568;chromatin modification;0.00017794748180047!GO:0044262;cellular carbohydrate metabolic process;0.000180738813729488!GO:0008361;regulation of cell size;0.0001915304267477!GO:0043021;ribonucleoprotein binding;0.000196203547490809!GO:0030036;actin cytoskeleton organization and biogenesis;0.000198916253178245!GO:0048522;positive regulation of cellular process;0.000200101042576139!GO:0051427;hormone receptor binding;0.000207261867431101!GO:0030133;transport vesicle;0.000211259960643854!GO:0043623;cellular protein complex assembly;0.000213370159381307!GO:0005815;microtubule organizing center;0.000227586168493712!GO:0000314;organellar small ribosomal subunit;0.000228624191805188!GO:0005763;mitochondrial small ribosomal subunit;0.000228624191805188!GO:0016049;cell growth;0.000245461827804716!GO:0001558;regulation of cell growth;0.000268182727432429!GO:0046474;glycerophospholipid biosynthetic process;0.000271735582593135!GO:0003713;transcription coactivator activity;0.000274135370673717!GO:0007243;protein kinase cascade;0.000291968031046207!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00030031145345273!GO:0008250;oligosaccharyl transferase complex;0.000310513076919056!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000326659221523655!GO:0015399;primary active transmembrane transporter activity;0.000326659221523655!GO:0005885;Arp2/3 protein complex;0.000334411108918915!GO:0051028;mRNA transport;0.000359594282950386!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000367875958544403!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000394079482226152!GO:0004576;oligosaccharyl transferase activity;0.000407851136515565!GO:0035257;nuclear hormone receptor binding;0.000426022733377046!GO:0030663;COPI coated vesicle membrane;0.000429655175840142!GO:0030126;COPI vesicle coat;0.000429655175840142!GO:0000786;nucleosome;0.000454509357845556!GO:0006626;protein targeting to mitochondrion;0.000486119815452402!GO:0018196;peptidyl-asparagine modification;0.000519391176937171!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000519391176937171!GO:0050789;regulation of biological process;0.000570220642507694!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000575704909497466!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000616501675332121!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000656251964798244!GO:0065009;regulation of a molecular function;0.000672596429188823!GO:0051329;interphase of mitotic cell cycle;0.000695484238535785!GO:0009165;nucleotide biosynthetic process;0.000701320273603956!GO:0006891;intra-Golgi vesicle-mediated transport;0.000719348406825152!GO:0016044;membrane organization and biogenesis;0.000732903628517598!GO:0019843;rRNA binding;0.000855016580186068!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000881281162876661!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000895951869799169!GO:0030029;actin filament-based process;0.000920497594855902!GO:0051920;peroxiredoxin activity;0.000977057112768081!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00105814329698399!GO:0030137;COPI-coated vesicle;0.00115561829834828!GO:0043681;protein import into mitochondrion;0.00121865341407976!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00122241781124813!GO:0003899;DNA-directed RNA polymerase activity;0.0012905737378771!GO:0004177;aminopeptidase activity;0.00131029759672993!GO:0005819;spindle;0.00134194174319414!GO:0007010;cytoskeleton organization and biogenesis;0.00143763459583331!GO:0006950;response to stress;0.00149213266468117!GO:0046489;phosphoinositide biosynthetic process;0.00150636455036745!GO:0007050;cell cycle arrest;0.00159592191227351!GO:0008610;lipid biosynthetic process;0.00159592191227351!GO:0051252;regulation of RNA metabolic process;0.00164409566712346!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00169233251495622!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00169233251495622!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00169233251495622!GO:0022890;inorganic cation transmembrane transporter activity;0.00173388779186977!GO:0046467;membrane lipid biosynthetic process;0.00184230158132069!GO:0030658;transport vesicle membrane;0.00185253916796067!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00189910338705456!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00189910338705456!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00190039687209604!GO:0030176;integral to endoplasmic reticulum membrane;0.00190584270278551!GO:0043284;biopolymer biosynthetic process;0.0019332014705521!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00206379264585615!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00213815251308874!GO:0042802;identical protein binding;0.0022019609785584!GO:0015992;proton transport;0.00229903227848271!GO:0007264;small GTPase mediated signal transduction;0.00238248148791199!GO:0030134;ER to Golgi transport vesicle;0.00240655917922595!GO:0048500;signal recognition particle;0.00251124632353482!GO:0051325;interphase;0.00263250635386009!GO:0016481;negative regulation of transcription;0.00265894556593861!GO:0006414;translational elongation;0.00269380645496663!GO:0006818;hydrogen transport;0.00270448174608627!GO:0030659;cytoplasmic vesicle membrane;0.00274620701229152!GO:0006839;mitochondrial transport;0.00285175725761203!GO:0008186;RNA-dependent ATPase activity;0.00287191489996668!GO:0006383;transcription from RNA polymerase III promoter;0.00288875720121117!GO:0030027;lamellipodium;0.00289316644084844!GO:0000075;cell cycle checkpoint;0.00292955165942814!GO:0030132;clathrin coat of coated pit;0.00304750725370967!GO:0030127;COPII vesicle coat;0.00311180792694578!GO:0012507;ER to Golgi transport vesicle membrane;0.00311180792694578!GO:0007006;mitochondrial membrane organization and biogenesis;0.00319274421562589!GO:0007040;lysosome organization and biogenesis;0.003288841003778!GO:0019899;enzyme binding;0.00353108950567913!GO:0031072;heat shock protein binding;0.00356442049284225!GO:0003690;double-stranded DNA binding;0.00374334637580259!GO:0051287;NAD binding;0.00400650105526337!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00407001017333751!GO:0007051;spindle organization and biogenesis;0.00407001017333751!GO:0016363;nuclear matrix;0.00408961243267226!GO:0009967;positive regulation of signal transduction;0.00410609952556511!GO:0030118;clathrin coat;0.00420002791583737!GO:0044433;cytoplasmic vesicle part;0.00465596714213!GO:0008047;enzyme activator activity;0.00466448030731172!GO:0008139;nuclear localization sequence binding;0.00466448030731172!GO:0006509;membrane protein ectodomain proteolysis;0.00474702822356552!GO:0033619;membrane protein proteolysis;0.00474702822356552!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00480121215064159!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00480121215064159!GO:0006007;glucose catabolic process;0.00480450773176667!GO:0006497;protein amino acid lipidation;0.00496957400394149!GO:0006740;NADPH regeneration;0.0050392102766185!GO:0006098;pentose-phosphate shunt;0.0050392102766185!GO:0005581;collagen;0.0050548237707844!GO:0030660;Golgi-associated vesicle membrane;0.0050813706144744!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0050813706144744!GO:0015002;heme-copper terminal oxidase activity;0.0050813706144744!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0050813706144744!GO:0004129;cytochrome-c oxidase activity;0.0050813706144744!GO:0051168;nuclear export;0.00511873308451142!GO:0003729;mRNA binding;0.00518717965053793!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0052624444333654!GO:0045047;protein targeting to ER;0.0052624444333654!GO:0017166;vinculin binding;0.00547208174452018!GO:0048487;beta-tubulin binding;0.00567893373566791!GO:0043492;ATPase activity, coupled to movement of substances;0.00577465321866268!GO:0045045;secretory pathway;0.00577465321866268!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00577567291501182!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00579984457565296!GO:0043488;regulation of mRNA stability;0.00597245740010309!GO:0043487;regulation of RNA stability;0.00597245740010309!GO:0008632;apoptotic program;0.00601385576727556!GO:0008243;plasminogen activator activity;0.00610415523589239!GO:0051087;chaperone binding;0.00622297117828625!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00641140922940481!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00653081789546926!GO:0048471;perinuclear region of cytoplasm;0.00656311501192696!GO:0035258;steroid hormone receptor binding;0.00660248069870358!GO:0004004;ATP-dependent RNA helicase activity;0.00664950690426979!GO:0046483;heterocycle metabolic process;0.00671040714304096!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00675574976940856!GO:0008180;signalosome;0.00683913393004398!GO:0016197;endosome transport;0.00696326543074788!GO:0006401;RNA catabolic process;0.0070949637990433!GO:0007033;vacuole organization and biogenesis;0.00732787118427469!GO:0008154;actin polymerization and/or depolymerization;0.00733319886725069!GO:0048518;positive regulation of biological process;0.00766842905203979!GO:0008312;7S RNA binding;0.00778061901454605!GO:0000059;protein import into nucleus, docking;0.00784521999373087!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00797201803504601!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00804555127540666!GO:0006595;polyamine metabolic process;0.00807203901577438!GO:0006892;post-Golgi vesicle-mediated transport;0.00812440270983807!GO:0050790;regulation of catalytic activity;0.00817907426010055!GO:0044420;extracellular matrix part;0.00826084324430952!GO:0012506;vesicle membrane;0.00838698040329327!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00855236216371735!GO:0006402;mRNA catabolic process;0.00879934595998557!GO:0030119;AP-type membrane coat adaptor complex;0.00881963506436157!GO:0000082;G1/S transition of mitotic cell cycle;0.00923917164809942!GO:0006261;DNA-dependent DNA replication;0.00930420632357632!GO:0005869;dynactin complex;0.00937231020703856!GO:0045792;negative regulation of cell size;0.0094536077302379!GO:0016126;sterol biosynthetic process;0.00954921752546326!GO:0006650;glycerophospholipid metabolic process;0.0097884348105162!GO:0050662;coenzyme binding;0.00990865559869994!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0100907839592175!GO:0030308;negative regulation of cell growth;0.0103409747601888!GO:0019752;carboxylic acid metabolic process;0.0103769058464218!GO:0031418;L-ascorbic acid binding;0.0105539031275854!GO:0040008;regulation of growth;0.0107423081700451!GO:0006118;electron transport;0.0107836280048547!GO:0005684;U2-dependent spliceosome;0.0109291770487288!GO:0003711;transcription elongation regulator activity;0.0113076603629256!GO:0015631;tubulin binding;0.0117976609482108!GO:0031970;organelle envelope lumen;0.0118773455604855!GO:0030880;RNA polymerase complex;0.0119250984146408!GO:0001726;ruffle;0.0119250984146408!GO:0005874;microtubule;0.0119250984146408!GO:0016272;prefoldin complex;0.0119521332335851!GO:0045936;negative regulation of phosphate metabolic process;0.0119647726646112!GO:0006082;organic acid metabolic process;0.0120095791117232!GO:0005862;muscle thin filament tropomyosin;0.0121470613333494!GO:0031901;early endosome membrane;0.0125331778601262!GO:0000209;protein polyubiquitination;0.0125467120632675!GO:0000339;RNA cap binding;0.0125513020443714!GO:0044452;nucleolar part;0.0126004823198429!GO:0051052;regulation of DNA metabolic process;0.01309284072741!GO:0008320;protein transmembrane transporter activity;0.0133624735248912!GO:0033673;negative regulation of kinase activity;0.0133863559095161!GO:0006469;negative regulation of protein kinase activity;0.0133863559095161!GO:0046519;sphingoid metabolic process;0.0133863559095161!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0135977736540748!GO:0008092;cytoskeletal protein binding;0.0136886269499168!GO:0042158;lipoprotein biosynthetic process;0.0138683397229769!GO:0006979;response to oxidative stress;0.0139483888490197!GO:0005657;replication fork;0.0140142925354826!GO:0030041;actin filament polymerization;0.0140554382653748!GO:0022884;macromolecule transmembrane transporter activity;0.0141603019392607!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0141603019392607!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0141724862785346!GO:0006506;GPI anchor biosynthetic process;0.0144161655340314!GO:0043022;ribosome binding;0.0145123085900926!GO:0048144;fibroblast proliferation;0.0147900368201275!GO:0048145;regulation of fibroblast proliferation;0.0147900368201275!GO:0030125;clathrin vesicle coat;0.0152418241264083!GO:0030665;clathrin coated vesicle membrane;0.0152418241264083!GO:0030131;clathrin adaptor complex;0.0155296233260261!GO:0008033;tRNA processing;0.0159648089755036!GO:0005832;chaperonin-containing T-complex;0.0164262412277844!GO:0005096;GTPase activator activity;0.0165223813207665!GO:0006693;prostaglandin metabolic process;0.0165647503867881!GO:0006692;prostanoid metabolic process;0.0165647503867881!GO:0005758;mitochondrial intermembrane space;0.016594101976929!GO:0050811;GABA receptor binding;0.0170940749832784!GO:0003682;chromatin binding;0.0171368845945979!GO:0031543;peptidyl-proline dioxygenase activity;0.0172894794948227!GO:0006354;RNA elongation;0.0173363162320859!GO:0051348;negative regulation of transferase activity;0.0173514868702777!GO:0006984;ER-nuclear signaling pathway;0.0175033108310298!GO:0031529;ruffle organization and biogenesis;0.0175399763038143!GO:0065007;biological regulation;0.0177091688933435!GO:0007021;tubulin folding;0.0179073237744321!GO:0051128;regulation of cellular component organization and biogenesis;0.0179073237744321!GO:0045941;positive regulation of transcription;0.0181855750277244!GO:0006505;GPI anchor metabolic process;0.0181855750277244!GO:0006607;NLS-bearing substrate import into nucleus;0.0184705480449135!GO:0030521;androgen receptor signaling pathway;0.0184705480449135!GO:0032940;secretion by cell;0.0185309378405773!GO:0003684;damaged DNA binding;0.0187396891157081!GO:0051540;metal cluster binding;0.0189487333222163!GO:0051536;iron-sulfur cluster binding;0.0189487333222163!GO:0006672;ceramide metabolic process;0.0193792046357208!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0203320301593503!GO:0000049;tRNA binding;0.0205381346807221!GO:0001516;prostaglandin biosynthetic process;0.0208075815816038!GO:0046457;prostanoid biosynthetic process;0.0208075815816038!GO:0009116;nucleoside metabolic process;0.0210407068842091!GO:0006289;nucleotide-excision repair;0.0216179936375765!GO:0006739;NADP metabolic process;0.0216179936375765!GO:0003746;translation elongation factor activity;0.0219098038183487!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0219427590228942!GO:0005100;Rho GTPase activator activity;0.022264571491373!GO:0009112;nucleobase metabolic process;0.0234104244379845!GO:0048468;cell development;0.02342442853354!GO:0006778;porphyrin metabolic process;0.02342442853354!GO:0033013;tetrapyrrole metabolic process;0.02342442853354!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0234687493986043!GO:0000428;DNA-directed RNA polymerase complex;0.0234687493986043!GO:0031124;mRNA 3'-end processing;0.0234760439022892!GO:0000776;kinetochore;0.0235391524976214!GO:0006769;nicotinamide metabolic process;0.0238640827446285!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0241044754322366!GO:0048146;positive regulation of fibroblast proliferation;0.0241392427954975!GO:0006417;regulation of translation;0.0241392427954975!GO:0031371;ubiquitin conjugating enzyme complex;0.0244054227804219!GO:0050681;androgen receptor binding;0.0244225134740927!GO:0016860;intramolecular oxidoreductase activity;0.0249776281141122!GO:0006302;double-strand break repair;0.0254661105441081!GO:0000096;sulfur amino acid metabolic process;0.0255647380425023!GO:0007034;vacuolar transport;0.0259762257480867!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0261193441528084!GO:0000775;chromosome, pericentric region;0.0262052091671988!GO:0003678;DNA helicase activity;0.0262052091671988!GO:0042326;negative regulation of phosphorylation;0.0262346485463616!GO:0003756;protein disulfide isomerase activity;0.0266952284831545!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0266952284831545!GO:0045893;positive regulation of transcription, DNA-dependent;0.0269780720343651!GO:0043433;negative regulation of transcription factor activity;0.0272614253615914!GO:0006695;cholesterol biosynthetic process;0.0273891208363241!GO:0016408;C-acyltransferase activity;0.0275640420199988!GO:0042168;heme metabolic process;0.0276102560067875!GO:0005774;vacuolar membrane;0.0279623781582563!GO:0019206;nucleoside kinase activity;0.0280337156546129!GO:0030032;lamellipodium biogenesis;0.0281083915944919!GO:0009119;ribonucleoside metabolic process;0.0289816850308894!GO:0016251;general RNA polymerase II transcription factor activity;0.0297225405938172!GO:0004287;prolyl oligopeptidase activity;0.0298982986258501!GO:0019798;procollagen-proline dioxygenase activity;0.0301183171603771!GO:0051539;4 iron, 4 sulfur cluster binding;0.0301688360565726!GO:0022406;membrane docking;0.0303133516885871!GO:0048278;vesicle docking;0.0303133516885871!GO:0008538;proteasome activator activity;0.0311117866970001!GO:0022408;negative regulation of cell-cell adhesion;0.0313608200221001!GO:0006733;oxidoreduction coenzyme metabolic process;0.0315836661169572!GO:0009225;nucleotide-sugar metabolic process;0.0322284632754514!GO:0046365;monosaccharide catabolic process;0.0322328203940681!GO:0051338;regulation of transferase activity;0.033271991945302!GO:0031625;ubiquitin protein ligase binding;0.0333363742993281!GO:0030384;phosphoinositide metabolic process;0.0333363742993281!GO:0001872;zymosan binding;0.0335436533095898!GO:0001878;response to yeast;0.0335436533095898!GO:0005637;nuclear inner membrane;0.0336885045958868!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0337126654626495!GO:0005669;transcription factor TFIID complex;0.0345499734292144!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0345499734292144!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0345499734292144!GO:0033043;regulation of organelle organization and biogenesis;0.0345499734292144!GO:0007093;mitotic cell cycle checkpoint;0.0346814686636466!GO:0008094;DNA-dependent ATPase activity;0.0348595166738742!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0352468223431525!GO:0016584;nucleosome positioning;0.0354846180808034!GO:0003923;GPI-anchor transamidase activity;0.0355425287145466!GO:0016255;attachment of GPI anchor to protein;0.0355425287145466!GO:0042765;GPI-anchor transamidase complex;0.0355425287145466!GO:0030433;ER-associated protein catabolic process;0.0356966381386571!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0356966381386571!GO:0007030;Golgi organization and biogenesis;0.0360333529597108!GO:0035035;histone acetyltransferase binding;0.0365881212085489!GO:0030508;thiol-disulfide exchange intermediate activity;0.0368135042825476!GO:0000738;DNA catabolic process, exonucleolytic;0.0370165336768013!GO:0030833;regulation of actin filament polymerization;0.038064652030771!GO:0030145;manganese ion binding;0.038064652030771!GO:0043407;negative regulation of MAP kinase activity;0.0383773993675193!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0391787070388651!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0391787070388651!GO:0007052;mitotic spindle organization and biogenesis;0.0394776945239178!GO:0006518;peptide metabolic process;0.0395594419483514!GO:0019318;hexose metabolic process;0.040451149628762!GO:0005801;cis-Golgi network;0.040470807782181!GO:0006096;glycolysis;0.040470807782181!GO:0006904;vesicle docking during exocytosis;0.0407747599850737!GO:0008022;protein C-terminus binding;0.0412060391424403!GO:0006275;regulation of DNA replication;0.04146926199047!GO:0006458;'de novo' protein folding;0.0417437922351753!GO:0051084;'de novo' posttranslational protein folding;0.0417437922351753!GO:0031902;late endosome membrane;0.0418110617915475!GO:0005092;GDP-dissociation inhibitor activity;0.0422346422793181!GO:0006368;RNA elongation from RNA polymerase II promoter;0.042662927541496!GO:0030911;TPR domain binding;0.0433279625003401!GO:0004228;gelatinase A activity;0.0434369391719926!GO:0001955;blood vessel maturation;0.0434369391719926!GO:0001527;microfibril;0.0441957890656171!GO:0005996;monosaccharide metabolic process;0.0448298347087929!GO:0006352;transcription initiation;0.0451114207191262!GO:0005876;spindle microtubule;0.0451277436641543!GO:0006897;endocytosis;0.0452612663395351!GO:0010324;membrane invagination;0.0452612663395351!GO:0006144;purine base metabolic process;0.0467762050372902!GO:0005975;carbohydrate metabolic process;0.0469470751504168!GO:0046164;alcohol catabolic process;0.0472781909582378!GO:0043549;regulation of kinase activity;0.0475227924624528!GO:0022415;viral reproductive process;0.0475640860724049!GO:0005586;collagen type III;0.0480990190307667!GO:0045926;negative regulation of growth;0.0483256079607732!GO:0019320;hexose catabolic process;0.0486424382472541!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0487522650263344!GO:0007242;intracellular signaling cascade;0.0488620576784151!GO:0008147;structural constituent of bone;0.0492817079475475!GO:0006611;protein export from nucleus;0.0497344959723976 | |||
|sample_id=11836 | |sample_id=11836 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=ovary | |sample_tissue=ovary | ||
|top_motifs=ALX4:2.19893845851;NKX3-1:1.81067194391;HOX{A4,D4}:1.79041489808;TAL1_TCF{3,4,12}:1.74360474922;AIRE:1.70721616348;HSF1,2:1.65334570247;ZNF384:1.55539609262;GATA4:1.43880255377;ALX1:1.3895267456;PAX4:1.31375980492;EVI1:1.28535613518;XBP1:1.26660532775;UFEwm:1.25658710134;HES1:1.21624763931;EN1,2:1.16542395496;HMX1:1.15322179074;HIF1A:1.12020370213;PAX1,9:1.08734139915;POU3F1..4:1.01549220342;ZNF238:0.986699702247;IKZF1:0.98284696159;ZBTB16:0.965812765812;MYBL2:0.953646504112;ZNF423:0.944559658856;HOX{A5,B5}:0.93009182462;GZF1:0.917289588568;FOXD3:0.902901197252;KLF4:0.894876899951;TLX1..3_NFIC{dimer}:0.880867817595;EBF1:0.834135332949;NFE2L2:0.788709567206;PAX8:0.78508635385;TEAD1:0.763116900811;ZIC1..3:0.749033837529;NFATC1..3:0.740666145122;FOX{I1,J2}:0.730250749264;NKX2-2,8:0.686754231926;SRF:0.674286209102;GFI1B:0.653515715927;TLX2:0.649459557611;NR3C1:0.618064100468;T:0.605636303442;TEF:0.582888644091;GLI1..3:0.531647676969;HMGA1,2:0.470420762712;NFE2L1:0.462413787352;RXR{A,B,G}:0.433383202487;MZF1:0.43225732221;PRDM1:0.424576450785;BACH2:0.424284019205;DBP:0.420554706305;ESR1:0.40779683932;CDX1,2,4:0.403110723082;MAFB:0.393902502321;AHR_ARNT_ARNT2:0.392536835835;PAX6:0.386006173489;LHX3,4:0.381720681741;CDC5L:0.372184136016;FOS_FOS{B,L1}_JUN{B,D}:0.350742523387;NFIL3:0.345434614416;IRF1,2:0.339169527849;GTF2I:0.330093468588;GTF2A1,2:0.314139959142;PATZ1:0.306749832008;GCM1,2:0.298457457045;ZNF148:0.289920265371;IRF7:0.288855189095;ATF6:0.266802509609;HLF:0.260010524326;AR:0.259467061728;ARID5B:0.251430858615;MYFfamily:0.24855038171;ZBTB6:0.243109541737;FOXM1:0.242131027561;FOXL1:0.219272986212;SOX17:0.18881268244;ONECUT1,2:0.183008404404;RFX1:0.177548984973;POU5F1:0.156571998198;PBX1:0.153957627615;ESRRA:0.141196351784;TBP:0.138675004209;HNF1A:0.120503103182;NHLH1,2:0.116606524457;POU1F1:0.113881510437;HBP1_HMGB_SSRP1_UBTF:0.103936996244;NFE2:0.0997929042291;TFAP4:0.0973744852151;PPARG:0.0910511798419;PAX3,7:0.0907887161899;SPZ1:0.0841046147885;CRX:0.0782940110525;FOXP3:0.07749933114;TP53:0.0628370740758;HOXA9_MEIS1:0.0439127397238;FOXO1,3,4:0.0430919101969;XCPE1{core}:0.0359305739088;NKX3-2:0.018144701008;NR1H4:0.013316083268;POU6F1:-0.0036583104829;TFCP2:-0.0106814040907;RUNX1..3:-0.0171100693165;JUN:-0.019212362711;CEBPA,B_DDIT3:-0.031444806853;STAT2,4,6:-0.033396673486;RXRA_VDR{dimer}:-0.0377684003873;HAND1,2:-0.041730866513;LMO2:-0.0458071648114;bHLH_family:-0.0573976899194;FOSL2:-0.0874832619001;HIC1:-0.0891914047069;SOX2:-0.108154208193;RREB1:-0.11231415886;HOX{A6,A7,B6,B7}:-0.113363469573;PRRX1,2:-0.115701638201;SMAD1..7,9:-0.126011129926;REST:-0.130193746302;EGR1..3:-0.154398627172;NFIX:-0.158356062819;GFI1:-0.165027932494;LEF1_TCF7_TCF7L1,2:-0.167641394616;MYB:-0.169334759082;DMAP1_NCOR{1,2}_SMARC:-0.175458912058;TBX4,5:-0.184177909908;TGIF1:-0.197507393945;HNF4A_NR2F1,2:-0.215590099453;ELK1,4_GABP{A,B1}:-0.218807947203;E2F1..5:-0.220357547942;FOXP1:-0.227738792079;TFAP2B:-0.230873689745;MTE{core}:-0.235258215997;BPTF:-0.238148890944;ATF2:-0.238578601788;MEF2{A,B,C,D}:-0.263473437352;OCT4_SOX2{dimer}:-0.270868672997;MAZ:-0.285805117955;YY1:-0.287220500079;RFX2..5_RFXANK_RFXAP:-0.29188752;MED-1{core}:-0.294852938078;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.333118445103;NFKB1_REL_RELA:-0.362895759216;SPI1:-0.395324290839;NANOG{mouse}:-0.40321113552;PAX2:-0.413409271786;NR6A1:-0.447840445058;EP300:-0.447941188543;ZNF143:-0.458515557185;PITX1..3:-0.459772160671;TOPORS:-0.461606350349;ZFP161:-0.462098548975;CREB1:-0.475686287461;NKX6-1,2:-0.488447527653;FOXN1:-0.502573314109;ETS1,2:-0.515217239843;NRF1:-0.515655042889;NKX2-1,4:-0.541147615091;ATF5_CREB3:-0.542238458681;STAT5{A,B}:-0.553920712223;ELF1,2,4:-0.559273235222;POU2F1..3:-0.665574478831;SPIB:-0.666460303758;PAX5:-0.681891758065;CUX2:-0.715972428849;GATA6:-0.750929656371;IKZF2:-0.762306794571;NKX2-3_NKX2-5:-0.802309918856;SOX5:-0.803743741983;SOX{8,9,10}:-0.809212376355;SREBF1,2:-0.830446127533;FOX{D1,D2}:-0.840776351759;MTF1:-0.861228889289;SNAI1..3:-0.878223036003;BREu{core}:-0.887299443222;TFDP1:-0.888479646362;TFAP2{A,C}:-0.893365086603;RBPJ:-0.92012825922;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.920740374991;SP1:-0.928615625883;ATF4:-0.949402965393;PDX1:-0.967758357131;STAT1,3:-0.990954430585;NFY{A,B,C}:-1.01003478265;RORA:-1.0224814642;ZEB1:-1.03909776814;NR5A1,2:-1.04238425142;FOX{F1,F2,J1}:-1.04660940392;FOXQ1:-1.11127058695;NANOG:-1.12183310773;ADNP_IRX_SIX_ZHX:-1.12786588817;FOXA2:-1.2257177759;VSX1,2:-1.28622490449;MYOD1:-1.33183550362 | |top_motifs=ALX4:2.19893845851;NKX3-1:1.81067194391;HOX{A4,D4}:1.79041489808;TAL1_TCF{3,4,12}:1.74360474922;AIRE:1.70721616348;HSF1,2:1.65334570247;ZNF384:1.55539609262;GATA4:1.43880255377;ALX1:1.3895267456;PAX4:1.31375980492;EVI1:1.28535613518;XBP1:1.26660532775;UFEwm:1.25658710134;HES1:1.21624763931;EN1,2:1.16542395496;HMX1:1.15322179074;HIF1A:1.12020370213;PAX1,9:1.08734139915;POU3F1..4:1.01549220342;ZNF238:0.986699702247;IKZF1:0.98284696159;ZBTB16:0.965812765812;MYBL2:0.953646504112;ZNF423:0.944559658856;HOX{A5,B5}:0.93009182462;GZF1:0.917289588568;FOXD3:0.902901197252;KLF4:0.894876899951;TLX1..3_NFIC{dimer}:0.880867817595;EBF1:0.834135332949;NFE2L2:0.788709567206;PAX8:0.78508635385;TEAD1:0.763116900811;ZIC1..3:0.749033837529;NFATC1..3:0.740666145122;FOX{I1,J2}:0.730250749264;NKX2-2,8:0.686754231926;SRF:0.674286209102;GFI1B:0.653515715927;TLX2:0.649459557611;NR3C1:0.618064100468;T:0.605636303442;TEF:0.582888644091;GLI1..3:0.531647676969;HMGA1,2:0.470420762712;NFE2L1:0.462413787352;RXR{A,B,G}:0.433383202487;MZF1:0.43225732221;PRDM1:0.424576450785;BACH2:0.424284019205;DBP:0.420554706305;ESR1:0.40779683932;CDX1,2,4:0.403110723082;MAFB:0.393902502321;AHR_ARNT_ARNT2:0.392536835835;PAX6:0.386006173489;LHX3,4:0.381720681741;CDC5L:0.372184136016;FOS_FOS{B,L1}_JUN{B,D}:0.350742523387;NFIL3:0.345434614416;IRF1,2:0.339169527849;GTF2I:0.330093468588;GTF2A1,2:0.314139959142;PATZ1:0.306749832008;GCM1,2:0.298457457045;ZNF148:0.289920265371;IRF7:0.288855189095;ATF6:0.266802509609;HLF:0.260010524326;AR:0.259467061728;ARID5B:0.251430858615;MYFfamily:0.24855038171;ZBTB6:0.243109541737;FOXM1:0.242131027561;FOXL1:0.219272986212;SOX17:0.18881268244;ONECUT1,2:0.183008404404;RFX1:0.177548984973;POU5F1:0.156571998198;PBX1:0.153957627615;ESRRA:0.141196351784;TBP:0.138675004209;HNF1A:0.120503103182;NHLH1,2:0.116606524457;POU1F1:0.113881510437;HBP1_HMGB_SSRP1_UBTF:0.103936996244;NFE2:0.0997929042291;TFAP4:0.0973744852151;PPARG:0.0910511798419;PAX3,7:0.0907887161899;SPZ1:0.0841046147885;CRX:0.0782940110525;FOXP3:0.07749933114;TP53:0.0628370740758;HOXA9_MEIS1:0.0439127397238;FOXO1,3,4:0.0430919101969;XCPE1{core}:0.0359305739088;NKX3-2:0.018144701008;NR1H4:0.013316083268;POU6F1:-0.0036583104829;TFCP2:-0.0106814040907;RUNX1..3:-0.0171100693165;JUN:-0.019212362711;CEBPA,B_DDIT3:-0.031444806853;STAT2,4,6:-0.033396673486;RXRA_VDR{dimer}:-0.0377684003873;HAND1,2:-0.041730866513;LMO2:-0.0458071648114;bHLH_family:-0.0573976899194;FOSL2:-0.0874832619001;HIC1:-0.0891914047069;SOX2:-0.108154208193;RREB1:-0.11231415886;HOX{A6,A7,B6,B7}:-0.113363469573;PRRX1,2:-0.115701638201;SMAD1..7,9:-0.126011129926;REST:-0.130193746302;EGR1..3:-0.154398627172;NFIX:-0.158356062819;GFI1:-0.165027932494;LEF1_TCF7_TCF7L1,2:-0.167641394616;MYB:-0.169334759082;DMAP1_NCOR{1,2}_SMARC:-0.175458912058;TBX4,5:-0.184177909908;TGIF1:-0.197507393945;HNF4A_NR2F1,2:-0.215590099453;ELK1,4_GABP{A,B1}:-0.218807947203;E2F1..5:-0.220357547942;FOXP1:-0.227738792079;TFAP2B:-0.230873689745;MTE{core}:-0.235258215997;BPTF:-0.238148890944;ATF2:-0.238578601788;MEF2{A,B,C,D}:-0.263473437352;OCT4_SOX2{dimer}:-0.270868672997;MAZ:-0.285805117955;YY1:-0.287220500079;RFX2..5_RFXANK_RFXAP:-0.29188752;MED-1{core}:-0.294852938078;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.333118445103;NFKB1_REL_RELA:-0.362895759216;SPI1:-0.395324290839;NANOG{mouse}:-0.40321113552;PAX2:-0.413409271786;NR6A1:-0.447840445058;EP300:-0.447941188543;ZNF143:-0.458515557185;PITX1..3:-0.459772160671;TOPORS:-0.461606350349;ZFP161:-0.462098548975;CREB1:-0.475686287461;NKX6-1,2:-0.488447527653;FOXN1:-0.502573314109;ETS1,2:-0.515217239843;NRF1:-0.515655042889;NKX2-1,4:-0.541147615091;ATF5_CREB3:-0.542238458681;STAT5{A,B}:-0.553920712223;ELF1,2,4:-0.559273235222;POU2F1..3:-0.665574478831;SPIB:-0.666460303758;PAX5:-0.681891758065;CUX2:-0.715972428849;GATA6:-0.750929656371;IKZF2:-0.762306794571;NKX2-3_NKX2-5:-0.802309918856;SOX5:-0.803743741983;SOX{8,9,10}:-0.809212376355;SREBF1,2:-0.830446127533;FOX{D1,D2}:-0.840776351759;MTF1:-0.861228889289;SNAI1..3:-0.878223036003;BREu{core}:-0.887299443222;TFDP1:-0.888479646362;TFAP2{A,C}:-0.893365086603;RBPJ:-0.92012825922;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.920740374991;SP1:-0.928615625883;ATF4:-0.949402965393;PDX1:-0.967758357131;STAT1,3:-0.990954430585;NFY{A,B,C}:-1.01003478265;RORA:-1.0224814642;ZEB1:-1.03909776814;NR5A1,2:-1.04238425142;FOX{F1,F2,J1}:-1.04660940392;FOXQ1:-1.11127058695;NANOG:-1.12183310773;ADNP_IRX_SIX_ZHX:-1.12786588817;FOXA2:-1.2257177759;VSX1,2:-1.28622490449;MYOD1:-1.33183550362 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11836-124G9;search_select_hide=table117:FF:11836-124G9 | |||
}} | }} | ||
Latest revision as of 18:22, 4 June 2020
| Name: | mesenchymal precursor cell - ovarian cancer left ovary, donor4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13094 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13094
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13094
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.186 |
| 10 | 10 | 0.105 |
| 100 | 100 | 0.486 |
| 101 | 101 | 0.688 |
| 102 | 102 | 0.487 |
| 103 | 103 | 0.193 |
| 104 | 104 | 0.937 |
| 105 | 105 | 0.0056 |
| 106 | 106 | 0.0666 |
| 107 | 107 | 0.0332 |
| 108 | 108 | 0.61 |
| 109 | 109 | 0.842 |
| 11 | 11 | 0.14 |
| 110 | 110 | 0.0643 |
| 111 | 111 | 0.628 |
| 112 | 112 | 0.463 |
| 113 | 113 | 0.182 |
| 114 | 114 | 0.0144 |
| 115 | 115 | 0.0308 |
| 116 | 116 | 0.0748 |
| 117 | 117 | 0.26 |
| 118 | 118 | 0.875 |
| 119 | 119 | 0.738 |
| 12 | 12 | 0.201 |
| 120 | 120 | 0.166 |
| 121 | 121 | 0.915 |
| 122 | 122 | 0.0377 |
| 123 | 123 | 0.102 |
| 124 | 124 | 0.956 |
| 125 | 125 | 0.448 |
| 126 | 126 | 0.725 |
| 127 | 127 | 0.871 |
| 128 | 128 | 0.312 |
| 129 | 129 | 0.236 |
| 13 | 13 | 0.966 |
| 130 | 130 | 0.937 |
| 131 | 131 | 0.351 |
| 132 | 132 | 0.868 |
| 133 | 133 | 0.418 |
| 134 | 134 | 0.471 |
| 135 | 135 | 0.667 |
| 136 | 136 | 0.296 |
| 137 | 137 | 0.86 |
| 138 | 138 | 0.899 |
| 139 | 139 | 0.457 |
| 14 | 14 | 0.123 |
| 140 | 140 | 0.477 |
| 141 | 141 | 0.663 |
| 142 | 142 | 0.37 |
| 143 | 143 | 0.554 |
| 144 | 144 | 0.228 |
| 145 | 145 | 0.144 |
| 146 | 146 | 0.615 |
| 147 | 147 | 0.138 |
| 148 | 148 | 0.0147 |
| 149 | 149 | 0.353 |
| 15 | 15 | 0.29 |
| 150 | 150 | 0.216 |
| 151 | 151 | 0.714 |
| 152 | 152 | 0.431 |
| 153 | 153 | 0.524 |
| 154 | 154 | 0.717 |
| 155 | 155 | 0.0891 |
| 156 | 156 | 0.338 |
| 157 | 157 | 0.844 |
| 158 | 158 | 0.0678 |
| 159 | 159 | 0.108 |
| 16 | 16 | 0.0246 |
| 160 | 160 | 0.124 |
| 161 | 161 | 0.495 |
| 162 | 162 | 0.466 |
| 163 | 163 | 0.241 |
| 164 | 164 | 0.0583 |
| 165 | 165 | 0.374 |
| 166 | 166 | 0.00371 |
| 167 | 167 | 0.97 |
| 168 | 168 | 0.403 |
| 169 | 169 | 0.0772 |
| 17 | 17 | 0.289 |
| 18 | 18 | 0.0942 |
| 19 | 19 | 0.0611 |
| 2 | 2 | 0.476 |
| 20 | 20 | 0.416 |
| 21 | 21 | 0.286 |
| 22 | 22 | 0.507 |
| 23 | 23 | 0.0223 |
| 24 | 24 | 0.761 |
| 25 | 25 | 0.189 |
| 26 | 26 | 0.118 |
| 27 | 27 | 0.485 |
| 28 | 28 | 0.232 |
| 29 | 29 | 0.0912 |
| 3 | 3 | 0.109 |
| 30 | 30 | 0.937 |
| 31 | 31 | 0.561 |
| 32 | 32 | 1.40416e-7 |
| 33 | 33 | 0.7 |
| 34 | 34 | 0.79 |
| 35 | 35 | 0.293 |
| 36 | 36 | 0.254 |
| 37 | 37 | 0.027 |
| 38 | 38 | 0.694 |
| 39 | 39 | 0.0944 |
| 4 | 4 | 0.248 |
| 40 | 40 | 0.495 |
| 41 | 41 | 0.641 |
| 42 | 42 | 0.412 |
| 43 | 43 | 0.23 |
| 44 | 44 | 0.348 |
| 45 | 45 | 0.627 |
| 46 | 46 | 0.0283 |
| 47 | 47 | 0.488 |
| 48 | 48 | 0.33 |
| 49 | 49 | 0.917 |
| 5 | 5 | 0.564 |
| 50 | 50 | 0.526 |
| 51 | 51 | 0.593 |
| 52 | 52 | 0.998 |
| 53 | 53 | 0.208 |
| 54 | 54 | 0.367 |
| 55 | 55 | 0.271 |
| 56 | 56 | 0.8 |
| 57 | 57 | 0.459 |
| 58 | 58 | 0.969 |
| 59 | 59 | 0.0775 |
| 6 | 6 | 0.187 |
| 60 | 60 | 0.62 |
| 61 | 61 | 0.678 |
| 62 | 62 | 0.33 |
| 63 | 63 | 0.161 |
| 64 | 64 | 0.958 |
| 65 | 65 | 0.266 |
| 66 | 66 | 0.295 |
| 67 | 67 | 0.653 |
| 68 | 68 | 0.626 |
| 69 | 69 | 0.748 |
| 7 | 7 | 0.462 |
| 70 | 70 | 0.115 |
| 71 | 71 | 0.0421 |
| 72 | 72 | 0.419 |
| 73 | 73 | 0.311 |
| 74 | 74 | 0.291 |
| 75 | 75 | 0.459 |
| 76 | 76 | 0.777 |
| 77 | 77 | 0.0444 |
| 78 | 78 | 0.693 |
| 79 | 79 | 0.0342 |
| 8 | 8 | 0.0187 |
| 80 | 80 | 0.473 |
| 81 | 81 | 0.178 |
| 82 | 82 | 0.256 |
| 83 | 83 | 0.637 |
| 84 | 84 | 0.687 |
| 85 | 85 | 0.137 |
| 86 | 86 | 0.253 |
| 87 | 87 | 0.965 |
| 88 | 88 | 0.565 |
| 89 | 89 | 0.0691 |
| 9 | 9 | 0.385 |
| 90 | 90 | 0.114 |
| 91 | 91 | 0.14 |
| 92 | 92 | 0.203 |
| 93 | 93 | 0.909 |
| 94 | 94 | 0.661 |
| 95 | 95 | 0.837 |
| 96 | 96 | 0.689 |
| 97 | 97 | 0.422 |
| 98 | 98 | 0.243 |
| 99 | 99 | 0.0288 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13094
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000273 human mesenchymal precursor cell- ovarian cancer-left ovary sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002119 (left ovary)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000273 (human mesenchymal precursor cell- ovarian cancer-left ovary sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
