FF:10419-106C5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005250 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007838;DRR008710;DRZ000135;DRZ001520;DRZ011485;DRZ012870 | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0001443,UBERON:0003100,UBERON:0000915,UBERON:0002330 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:5093,DOID:305,DOID:1612 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100816,FF:0104086,FF:0100356,FF:0103568,FF:0101908 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100816,FF:0101120 | |fonse_cell_line=FF:0100816,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100816,FF:0101120 | |fonse_cell_line_closure=FF:0100816,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10419-106C5 | |id=FF:10419-106C5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101908 | ||
|is_obsolete= | |||
|library_id=CNhs10736 | |||
|library_id_phase_based=2:CNhs10736 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10419 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10419 | |||
|name=breast carcinoma cell line:MDA-MB-453 | |name=breast carcinoma cell line:MDA-MB-453 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10736,LSID691,release008,COMPLETED | |profile_hcage=CNhs10736,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.090309733474095,0.548554013404766,-0.204825001593799,-0.247399412270797,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116909719066964,0,0,0,0,0,-0.0279495996557664,0,0,-0.0965432984973985,0,0,0,0,0,0,0,0,0,0,0,0,-0.187671767365062,0,0,0,0,0,0,0,0,0.250061985589549,0,0,0,0,0,0,0,0.00419774410673864,0,0,0.0858578631004026,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0364132912814638,0,0,0,0,0.0350041483061456,0,0,0,0,0,-0.292969499463253,0,0,0,0.0908157253697953,0.0294453571760134,0.0182066456407319,0,0.0182066456407319,0,0.174873261443727,-0.0852664068540179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268734826354199,0.0700082966122911,0,0,-0.079112335990984,-0.368447942000034,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.174873261443727,0,0,0.1832014903135,0.0364132912814638,0,0,0,0.0364132912814638,0,0,0.0364132912814638,0.301375138119201,0,-0.316538793179948,0.681579772458164,0,0,-0.11721443258312,0,0.0700082966122911,0,0,0.101190105349344,0,0.130282293501084,0.101190105349344,0,-0.128119866952565,0,1.32824911675159,0.0182066456407319,0,0,0,0.121918797829127,-0.305472230898407,0,-0.059074479086549,-0.0319309697959045,0,0.0364132912814638,0,0.0700082966122911,0.317803749380831,0,-0.0844661925122769,-0.0827201683234173,-0.0766966033093557,0.164819858088572,0.136396831421119,0,0,0,-0.515799616864314,-0.204799259080774,0,0,-0.121779851751874,-0.146345470254513,0,0,-0.391044581551635,0,-0.105658867398433,0.0138741791450221,0,0,0,0,0.0364132912814638,0,0,0,0,0.0364132912814638,0,0.0182066456407319,0,-0.0574934668214365,0.262534315678924,-0.0122033351968466,0.1832014903135,0.526522779723838,0,-0.0428316859167027,0,0,-0.373286155956567,-0.0209355556867264,0.0465160224921332,0.36089247641327,0,-0.302389727009913,-0.0882957523996234,-0.3569335638236,0.0908157253697953,-0.147401849371139,-0.189981719549847,0,-0.0858814442166602,0.0663415358941429,0.114455420997479,-0.292969499463253,-0.00649509027489905,-0.69373042447081,0.346135319405758,0,0.0364132912814638,0,0.629117322572869,0,0.08850284458384,-0.142894018505306,-0.0882460557868195,-0.127936642437406,0.0945419992305965,0.089336438042772,-0.116737499212461,0.277265579695332,0.494816297015703,-0.0612389315468847,-0.368361530956822,0,0.599188518749716,0.0956109375783452,-0.0186657423052751,0.649263108418756,-0.0672721597739132,0,0.311735754408313,0.224368022931043,0,-0.360241586566568,-0.151782098362149,0,0,-0.198681816476992,0,0.130282293501084,0,0,0.644531150294713,0.101640921645482,0.0874658588793136,-0.10257326805446,0,0.0419208052617948,0.0808913007454549,-0.0074674387067475,0,0.160197785791993,-0.0448197921080504,0.0964253490030301,-0.0144469367862059,0,-0.241822019980947,0.00431514276397948,-0.0539639321086058,-0.0422993909973173,0.550196856806668,0.177168338733998,0.184930497136758,-0.126204171697011,-0.47728770411505,0.098862680777001,-0.0881268324752877,0,-0.88354475051838,-0.679498131621524,0.00914805175047273,-0.479817752041176,0.0505140807427531,-0.0865862579826702,0,0.376197939691606,0,0.0460726152946743,0.12098704069493,-0.146577090572275,0.266472889525174,0,0.0990996824947263,-0.75171764649251,0.0364132912814638,-0.0985305336187376,-0.004528380150525,0.347220695971467,-0.150367083334639,0.449409372124658,0.230798962029292,0.007366685325011,0,0.29609737272129,0,0,0.36795826555293,-0.0280517333875981,0.0364132912814638,-0.0325278177792189,-0.213558562744789,-0.240246996227174,-0.0795577821534703,0,0,0.0627732521943455,0,0,0.734574349637838,-0.0636048451378017,0.22746472681484,-0.216913050205292,0.098295274201655,0.370550945893374,0,0.101190105349344,0.218116585503431,0,-0.78816112889509,0,0,0.312564075600656,-0.116628112990133,0,0,0,0,0,0.00158951253749873,0,0,0,0,0,-0.141823680465355,-0.224551036715364,0.478794404301911,0.173640249396259,0,0.0364132912814638,0,0,0.677678112777885,0,0,0,-1.59233083881968,0,-0.12301741567642,0,0,0,0,-0.179310111272011,-0.0456891365226633,0,0.141045906183802,0,0.155826080337588,0,0,-0.0497276985077476,0,0,0,0.050595052674672,-0.0213171657722002,-0.298031936953595,0,0,0,-0.240541110320327,0,0,0,0,0.245171675571267,0,0,-0.379771598031811,0,0.135057082111246,0.170576695807728,0,0.0736968991056681,-0.374254750468806,0.621386931951029,0,0.130282293501084,-0.0309799676639656,0,0,-0.183330156625093,-0.0459569316842025,0.0700082966122911,0,0,0,0,0,0.0700082966122911,0,-0.144306215787465,0,0,0,0,0,0.101190105349344,0,0.0364132912814638,0,0,0,-0.344688305513425,-0.0222157600462193,0,0,0,0,0,0,0,0.136977412904527,0.127622803797703,0,0,0,0,0,0,0,0,0.164407514634288,0,0,0,0,0,0.00419774410673864,0,0.0364132912814638,0,0,-0.494798824541593,0,0,0.0698585637779531,0,0,0,0,0,0,0.0364132912814638,0,0,0,0,0,0,-0.022128980686104,-0.262052338195372,0,0.130282293501084,0,0,0,0.548554013404766,0,-0.204825001593799,0,0,0,0,-0.0774710824275134,0,0,0,-0.104796384789156,0,-0.090309733474095,0,0,0,0,0,0.134407756752335,0.09160074515675,0.07877371278603,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.110610722403515,0.0476161416813973,0,0.0449781478732378,0,0,-0.232628352633041,0,0,0,0,0,0,-0.0131337783877952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0700082966122911,0,0,0,0,0,0,0.000146104501057169,0,0,0,0,0.0364132912814638,0,0,-0.0279495996557664,0,0,0.128934417287604,0,0.00347912388261089,0.00172643100229627,0.0364132912814638,0,0,0.21467432203727,-0.283220399823148,-0.0562095608324269,0,0,0.0700082966122911,-0.054385572482455,0,0,0,0,0.00323090919338975,0,0,0,0,0,0,0,0,0,0,0.0182066456407319,0,0,0,0.0364132912814638,0,0,0.1832014903135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116909719066964,0,0,0.0364132912814638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.050595052674672,0,0.0700082966122911,0,0.0364132912814638,0.050595052674672,0,0.0182066456407319,0,0,0,0,0.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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=56.42525 | |rna_weight_ug=56.42525 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1192 | |sample_cell_catalog=RCB1192 | ||
|sample_cell_line=MDA-MB-453 | |sample_cell_line=MDA-MB-453 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89429399503575e-265!GO:0043231;intracellular membrane-bound organelle;1.57989590267974e-234!GO:0043227;membrane-bound organelle;2.99518990289821e-234!GO:0043226;organelle;6.90328823462652e-225!GO:0043229;intracellular organelle;2.00260010424672e-224!GO:0005737;cytoplasm;6.48472259112131e-156!GO:0044422;organelle part;3.18845150691676e-151!GO:0044446;intracellular organelle part;7.05030413620271e-150!GO:0044444;cytoplasmic part;1.08130527125086e-116!GO:0005634;nucleus;1.12443076792296e-113!GO:0044237;cellular metabolic process;2.84794631137234e-100!GO:0044238;primary metabolic process;9.39662811882795e-99!GO:0043170;macromolecule metabolic process;1.23522802891586e-93!GO:0032991;macromolecular complex;1.82567398895841e-90!GO:0044428;nuclear part;1.09361200384652e-82!GO:0043233;organelle lumen;1.50769616540766e-78!GO:0031974;membrane-enclosed lumen;1.50769616540766e-78!GO:0030529;ribonucleoprotein complex;1.28101101491814e-75!GO:0003723;RNA binding;8.48025793983291e-71!GO:0043283;biopolymer metabolic process;4.31485364252619e-69!GO:0005739;mitochondrion;2.16602974042034e-66!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.54103320607961e-64!GO:0005515;protein binding;1.35595928891098e-60!GO:0010467;gene expression;1.76893570035178e-60!GO:0031090;organelle membrane;2.11184320498778e-54!GO:0006396;RNA processing;3.84911512666145e-52!GO:0031981;nuclear lumen;1.62479694584704e-51!GO:0015031;protein transport;2.87077490295081e-51!GO:0033036;macromolecule localization;5.76352069717989e-49!GO:0044429;mitochondrial part;6.32109303145824e-47!GO:0043234;protein complex;9.04151741885288e-46!GO:0045184;establishment of protein localization;2.06247794237366e-45!GO:0016043;cellular component organization and biogenesis;2.36181754553388e-45!GO:0008104;protein localization;2.77414207989205e-45!GO:0016071;mRNA metabolic process;3.77243036724408e-43!GO:0003676;nucleic acid binding;1.70466360000898e-42!GO:0031967;organelle envelope;4.88814412108815e-42!GO:0031975;envelope;8.39341628115332e-42!GO:0005840;ribosome;1.54307764931628e-41!GO:0006259;DNA metabolic process;1.56941628785292e-40!GO:0006412;translation;1.06606791301561e-39!GO:0008380;RNA splicing;5.58034536040726e-39!GO:0006397;mRNA processing;4.6164378846231e-37!GO:0046907;intracellular transport;1.54896225165316e-36!GO:0019538;protein metabolic process;1.29212663003368e-35!GO:0016070;RNA metabolic process;1.56273101045898e-35!GO:0003735;structural constituent of ribosome;2.18317966156401e-34!GO:0005654;nucleoplasm;6.02794781830642e-34!GO:0006996;organelle organization and biogenesis;9.63887120716803e-33!GO:0006886;intracellular protein transport;1.22336064037929e-32!GO:0065003;macromolecular complex assembly;3.1986275132459e-32!GO:0044267;cellular protein metabolic process;1.17563239937958e-31!GO:0009058;biosynthetic process;3.21083447542246e-31!GO:0005829;cytosol;3.9556244456262e-31!GO:0044260;cellular macromolecule metabolic process;5.07610804347974e-31!GO:0044249;cellular biosynthetic process;1.27540891742539e-30!GO:0005740;mitochondrial envelope;1.8990947119242e-30!GO:0033279;ribosomal subunit;1.49334269724021e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.89323221592884e-29!GO:0019866;organelle inner membrane;4.89323221592884e-29!GO:0031966;mitochondrial membrane;1.14509358059408e-28!GO:0022607;cellular component assembly;1.64464820082053e-28!GO:0043228;non-membrane-bound organelle;2.80978355943028e-28!GO:0043232;intracellular non-membrane-bound organelle;2.80978355943028e-28!GO:0009059;macromolecule biosynthetic process;3.22976367950825e-28!GO:0044451;nucleoplasm part;4.89584404961716e-28!GO:0005681;spliceosome;7.65438139615196e-28!GO:0005743;mitochondrial inner membrane;5.04206339027303e-27!GO:0000166;nucleotide binding;6.52225345269013e-27!GO:0051649;establishment of cellular localization;4.85909841697984e-25!GO:0051641;cellular localization;1.08379329775956e-24!GO:0007049;cell cycle;6.42496691193778e-24!GO:0012505;endomembrane system;3.63310847843241e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.16650682155483e-21!GO:0016874;ligase activity;8.75434363038463e-21!GO:0006974;response to DNA damage stimulus;9.78092142782568e-21!GO:0051276;chromosome organization and biogenesis;1.34133252922448e-20!GO:0006512;ubiquitin cycle;1.43515106049006e-20!GO:0006119;oxidative phosphorylation;1.85674292452519e-20!GO:0031980;mitochondrial lumen;1.39659608146766e-19!GO:0005759;mitochondrial matrix;1.39659608146766e-19!GO:0044455;mitochondrial membrane part;1.82094886280667e-19!GO:0044445;cytosolic part;2.58383415762781e-19!GO:0008134;transcription factor binding;3.77055757323358e-19!GO:0005694;chromosome;4.30729749395518e-19!GO:0032553;ribonucleotide binding;5.63227820628733e-19!GO:0032555;purine ribonucleotide binding;5.63227820628733e-19!GO:0044265;cellular macromolecule catabolic process;7.78142851961205e-19!GO:0022618;protein-RNA complex assembly;1.18422983640388e-18!GO:0016462;pyrophosphatase activity;1.35163005374819e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.37141406041508e-18!GO:0017076;purine nucleotide binding;2.54723543012747e-18!GO:0017111;nucleoside-triphosphatase activity;2.76899782731592e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.81900355547253e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;2.83397587108895e-18!GO:0006457;protein folding;3.05044061762037e-18!GO:0006281;DNA repair;6.21595636103578e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.03248007799016e-17!GO:0006323;DNA packaging;1.52954435676549e-17!GO:0019941;modification-dependent protein catabolic process;1.7889260430083e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.7889260430083e-17!GO:0005524;ATP binding;1.86076431150962e-17!GO:0006605;protein targeting;2.2143635824807e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.29795957890733e-17!GO:0044432;endoplasmic reticulum part;2.73677553835021e-17!GO:0044257;cellular protein catabolic process;3.32465612284892e-17!GO:0032559;adenyl ribonucleotide binding;3.44489450669358e-17!GO:0005730;nucleolus;6.20803015143065e-17!GO:0044427;chromosomal part;9.87944076927249e-17!GO:0043285;biopolymer catabolic process;1.37708923633086e-16!GO:0022402;cell cycle process;1.4815200684949e-16!GO:0030554;adenyl nucleotide binding;2.5209007505597e-16!GO:0008135;translation factor activity, nucleic acid binding;3.81347544684746e-16!GO:0005783;endoplasmic reticulum;5.14227343636862e-16!GO:0015935;small ribosomal subunit;7.71395230989838e-16!GO:0044248;cellular catabolic process;2.39813894603879e-15!GO:0009057;macromolecule catabolic process;4.55572115376594e-15!GO:0015934;large ribosomal subunit;1.00483049247905e-14!GO:0048193;Golgi vesicle transport;1.15939751030772e-14!GO:0006260;DNA replication;1.3153772136892e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.39127202496963e-14!GO:0009719;response to endogenous stimulus;2.12767420233245e-14!GO:0005746;mitochondrial respiratory chain;2.12767420233245e-14!GO:0005789;endoplasmic reticulum membrane;2.4704438706847e-14!GO:0043412;biopolymer modification;2.55541036033246e-14!GO:0016887;ATPase activity;2.70390983985801e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.90408318702991e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.558651006149e-14!GO:0000375;RNA splicing, via transesterification reactions;4.558651006149e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.558651006149e-14!GO:0016604;nuclear body;4.7261210111609e-14!GO:0031965;nuclear membrane;5.11059810306782e-14!GO:0016192;vesicle-mediated transport;6.09311357818571e-14!GO:0050136;NADH dehydrogenase (quinone) activity;9.68780178784885e-14!GO:0003954;NADH dehydrogenase activity;9.68780178784885e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.68780178784885e-14!GO:0051082;unfolded protein binding;1.02694281956114e-13!GO:0006366;transcription from RNA polymerase II promoter;1.17621676270917e-13!GO:0051186;cofactor metabolic process;3.02941795692707e-13!GO:0042623;ATPase activity, coupled;3.67412939454399e-13!GO:0005794;Golgi apparatus;4.05171444472166e-13!GO:0048770;pigment granule;4.12650006096584e-13!GO:0042470;melanosome;4.12650006096584e-13!GO:0000278;mitotic cell cycle;4.28278949519671e-13!GO:0005761;mitochondrial ribosome;4.80010298607351e-13!GO:0000313;organellar ribosome;4.80010298607351e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.87616611817104e-13!GO:0016607;nuclear speck;6.04678769677315e-13!GO:0030163;protein catabolic process;6.4185150800417e-13!GO:0006913;nucleocytoplasmic transport;8.74418312431177e-13!GO:0051301;cell division;1.2621450010993e-12!GO:0005635;nuclear envelope;1.28774278637673e-12!GO:0016568;chromatin modification;1.90307489025865e-12!GO:0051169;nuclear transport;2.29809020698501e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.14576302839223e-12!GO:0042773;ATP synthesis coupled electron transport;4.14576302839223e-12!GO:0006464;protein modification process;5.88150689877164e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.18319876645699e-12!GO:0045271;respiratory chain complex I;6.18319876645699e-12!GO:0005747;mitochondrial respiratory chain complex I;6.18319876645699e-12!GO:0003712;transcription cofactor activity;8.2155997481019e-12!GO:0006333;chromatin assembly or disassembly;8.2681577344933e-12!GO:0003743;translation initiation factor activity;1.01115533409473e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.18120041880096e-11!GO:0044453;nuclear membrane part;1.27788227058295e-11!GO:0000785;chromatin;1.68744454292808e-11!GO:0004386;helicase activity;1.68744454292808e-11!GO:0019222;regulation of metabolic process;1.68744454292808e-11!GO:0008565;protein transporter activity;1.74312528130511e-11!GO:0006446;regulation of translational initiation;1.93956836901382e-11!GO:0006413;translational initiation;2.48440438171445e-11!GO:0042254;ribosome biogenesis and assembly;2.7805901383986e-11!GO:0022403;cell cycle phase;2.80670545396254e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.87666948451842e-11!GO:0006732;coenzyme metabolic process;5.09359620475027e-11!GO:0043687;post-translational protein modification;5.88001433776314e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.03836841233573e-10!GO:0050794;regulation of cellular process;1.41936980922898e-10!GO:0006350;transcription;2.07465786143371e-10!GO:0008639;small protein conjugating enzyme activity;2.31194864069611e-10!GO:0065004;protein-DNA complex assembly;3.06408420245604e-10!GO:0006399;tRNA metabolic process;3.09042344440288e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.39162773037451e-10!GO:0008026;ATP-dependent helicase activity;3.88218168942087e-10!GO:0017038;protein import;4.99570552883139e-10!GO:0000087;M phase of mitotic cell cycle;5.04367763571979e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.25766612378459e-10!GO:0019787;small conjugating protein ligase activity;5.96545943576421e-10!GO:0031323;regulation of cellular metabolic process;7.64493034338623e-10!GO:0004842;ubiquitin-protein ligase activity;9.35350410705894e-10!GO:0007067;mitosis;1.0364871753358e-09!GO:0005643;nuclear pore;1.60533172525827e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.72647102397676e-09!GO:0016881;acid-amino acid ligase activity;1.77891844716622e-09!GO:0000279;M phase;2.02798789992934e-09!GO:0051726;regulation of cell cycle;4.77328625322002e-09!GO:0010468;regulation of gene expression;7.77786911278557e-09!GO:0000074;regulation of progression through cell cycle;7.93721819019336e-09!GO:0006163;purine nucleotide metabolic process;1.21280122490978e-08!GO:0005768;endosome;1.2142463184237e-08!GO:0050657;nucleic acid transport;1.34720829168936e-08!GO:0051236;establishment of RNA localization;1.34720829168936e-08!GO:0050658;RNA transport;1.34720829168936e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.39314769055422e-08!GO:0019829;cation-transporting ATPase activity;1.52711085589902e-08!GO:0032446;protein modification by small protein conjugation;1.61731114119813e-08!GO:0005793;ER-Golgi intermediate compartment;1.78235010889796e-08!GO:0006403;RNA localization;2.14961000929357e-08!GO:0009055;electron carrier activity;2.56668702574478e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.67861891452242e-08!GO:0009259;ribonucleotide metabolic process;3.32431211251932e-08!GO:0009056;catabolic process;3.39373381880226e-08!GO:0016567;protein ubiquitination;3.41069184601513e-08!GO:0065002;intracellular protein transport across a membrane;3.88082601534423e-08!GO:0006461;protein complex assembly;3.99623521986577e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.37685788777302e-08!GO:0009060;aerobic respiration;4.55264744115335e-08!GO:0032774;RNA biosynthetic process;5.39774327166511e-08!GO:0006164;purine nucleotide biosynthetic process;5.48898718039725e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.48898718039725e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.48898718039725e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.48898718039725e-08!GO:0009150;purine ribonucleotide metabolic process;6.07109202893014e-08!GO:0006351;transcription, DNA-dependent;6.36608224505963e-08!GO:0006364;rRNA processing;7.62281367820217e-08!GO:0005667;transcription factor complex;8.82239513043411e-08!GO:0015986;ATP synthesis coupled proton transport;9.74472703395689e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.74472703395689e-08!GO:0043038;amino acid activation;9.80130551013076e-08!GO:0006418;tRNA aminoacylation for protein translation;9.80130551013076e-08!GO:0043039;tRNA aminoacylation;9.80130551013076e-08!GO:0016740;transferase activity;1.07766954258412e-07!GO:0016072;rRNA metabolic process;1.3332266627887e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.38988548677205e-07!GO:0015630;microtubule cytoskeleton;1.4263205011342e-07!GO:0046930;pore complex;1.42930464699523e-07!GO:0048475;coated membrane;1.47859747507134e-07!GO:0030117;membrane coat;1.47859747507134e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.65771689218585e-07!GO:0009141;nucleoside triphosphate metabolic process;1.66073391791832e-07!GO:0051188;cofactor biosynthetic process;1.8015092400353e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.04459287512638e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.04459287512638e-07!GO:0009260;ribonucleotide biosynthetic process;2.08326443107458e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.45565189292714e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.45565189292714e-07!GO:0044431;Golgi apparatus part;2.49054033383203e-07!GO:0006334;nucleosome assembly;2.58623631782542e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.7382096631247e-07!GO:0012501;programmed cell death;2.74952985369158e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.32207030334893e-07!GO:0000245;spliceosome assembly;3.32207030334893e-07!GO:0007005;mitochondrion organization and biogenesis;3.35676615213184e-07!GO:0045449;regulation of transcription;3.53579320990425e-07!GO:0006915;apoptosis;3.56989914533736e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.62936871703783e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.62936871703783e-07!GO:0000151;ubiquitin ligase complex;3.91881620758039e-07!GO:0031497;chromatin assembly;4.1469593605114e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.25878371519394e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.65054826112487e-07!GO:0016564;transcription repressor activity;4.67818665726674e-07!GO:0051170;nuclear import;5.23913800812077e-07!GO:0005813;centrosome;5.3850098987204e-07!GO:0016563;transcription activator activity;5.73242652531905e-07!GO:0043623;cellular protein complex assembly;5.73877862857592e-07!GO:0045333;cellular respiration;6.14330918712773e-07!GO:0046034;ATP metabolic process;6.22610323456734e-07!GO:0051028;mRNA transport;6.33801175878917e-07!GO:0006606;protein import into nucleus;7.75633982530617e-07!GO:0006754;ATP biosynthetic process;8.62600831176587e-07!GO:0006753;nucleoside phosphate metabolic process;8.62600831176587e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.06195041973972e-07!GO:0043566;structure-specific DNA binding;9.19839804049622e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.00563688672998e-06!GO:0030120;vesicle coat;1.14383818639715e-06!GO:0030662;coated vesicle membrane;1.14383818639715e-06!GO:0006099;tricarboxylic acid cycle;1.15845645437198e-06!GO:0046356;acetyl-CoA catabolic process;1.15845645437198e-06!GO:0003713;transcription coactivator activity;1.2668158088425e-06!GO:0016779;nucleotidyltransferase activity;1.58783833960288e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.93113710530418e-06!GO:0005815;microtubule organizing center;1.9627005714354e-06!GO:0006613;cotranslational protein targeting to membrane;2.02433937734741e-06!GO:0051427;hormone receptor binding;2.045593727492e-06!GO:0006793;phosphorus metabolic process;2.13940601858919e-06!GO:0006796;phosphate metabolic process;2.13940601858919e-06!GO:0003677;DNA binding;2.40673466331495e-06!GO:0050789;regulation of biological process;2.44216865207294e-06!GO:0008219;cell death;2.47442882481779e-06!GO:0016265;death;2.47442882481779e-06!GO:0006084;acetyl-CoA metabolic process;2.8588596962409e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.92055571500864e-06!GO:0006261;DNA-dependent DNA replication;2.99583543842504e-06!GO:0009108;coenzyme biosynthetic process;3.34652348811236e-06!GO:0003697;single-stranded DNA binding;4.33460745004386e-06!GO:0035257;nuclear hormone receptor binding;5.00568237522646e-06!GO:0045259;proton-transporting ATP synthase complex;5.01486097393099e-06!GO:0006355;regulation of transcription, DNA-dependent;5.19358742213165e-06!GO:0031324;negative regulation of cellular metabolic process;5.19358742213165e-06!GO:0003724;RNA helicase activity;8.39565518808505e-06!GO:0000139;Golgi membrane;1.04674563174343e-05!GO:0005798;Golgi-associated vesicle;1.28853401618385e-05!GO:0016310;phosphorylation;1.3388512117025e-05!GO:0009109;coenzyme catabolic process;1.3388512117025e-05!GO:0051168;nuclear export;1.59501114887707e-05!GO:0003714;transcription corepressor activity;1.8826787925501e-05!GO:0006752;group transfer coenzyme metabolic process;2.08730241604159e-05!GO:0005819;spindle;2.24570625532574e-05!GO:0005770;late endosome;2.38212891360842e-05!GO:0003702;RNA polymerase II transcription factor activity;2.49366278787709e-05!GO:0044440;endosomal part;2.58774704625956e-05!GO:0010008;endosome membrane;2.58774704625956e-05!GO:0007264;small GTPase mediated signal transduction;2.68209187498048e-05!GO:0008654;phospholipid biosynthetic process;3.07302872304368e-05!GO:0006402;mRNA catabolic process;3.1146733168197e-05!GO:0016363;nuclear matrix;3.19279099969206e-05!GO:0051187;cofactor catabolic process;3.25132140016377e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.82923138185876e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.89777379913573e-05!GO:0009892;negative regulation of metabolic process;5.82091924104143e-05!GO:0016787;hydrolase activity;6.82948282045798e-05!GO:0000775;chromosome, pericentric region;6.894674316778e-05!GO:0043021;ribonucleoprotein binding;7.78388290183994e-05!GO:0006839;mitochondrial transport;7.96781745049664e-05!GO:0031988;membrane-bound vesicle;8.14329487025153e-05!GO:0016023;cytoplasmic membrane-bound vesicle;8.7353486068557e-05!GO:0045045;secretory pathway;9.46825435423542e-05!GO:0016741;transferase activity, transferring one-carbon groups;0.000104554642144759!GO:0042802;identical protein binding;0.000116089981144429!GO:0005762;mitochondrial large ribosomal subunit;0.000118029633666554!GO:0000315;organellar large ribosomal subunit;0.000118029633666554!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000124548651704232!GO:0003682;chromatin binding;0.000130836762816031!GO:0003690;double-stranded DNA binding;0.000140600929031778!GO:0003729;mRNA binding;0.000145744366640984!GO:0051329;interphase of mitotic cell cycle;0.000157030446521829!GO:0048471;perinuclear region of cytoplasm;0.000159719227685126!GO:0008168;methyltransferase activity;0.000165421529617138!GO:0006612;protein targeting to membrane;0.000165421529617138!GO:0006401;RNA catabolic process;0.000165421529617138!GO:0005839;proteasome core complex (sensu Eukaryota);0.000177125170284497!GO:0031072;heat shock protein binding;0.000177125170284497!GO:0007051;spindle organization and biogenesis;0.000209552745003606!GO:0051789;response to protein stimulus;0.00021450504788014!GO:0006986;response to unfolded protein;0.00021450504788014!GO:0016481;negative regulation of transcription;0.000221224365000293!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000224254952621986!GO:0015399;primary active transmembrane transporter activity;0.000224254952621986!GO:0019899;enzyme binding;0.000240215035562381!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000262084687559226!GO:0006414;translational elongation;0.000271630185930263!GO:0008186;RNA-dependent ATPase activity;0.000274886216667288!GO:0046489;phosphoinositide biosynthetic process;0.000292060386726214!GO:0005769;early endosome;0.000296724747279877!GO:0000786;nucleosome;0.000296877432246384!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000301117415210634!GO:0031968;organelle outer membrane;0.000312109235550755!GO:0051325;interphase;0.000317087265032285!GO:0016126;sterol biosynthetic process;0.000327657769637845!GO:0030384;phosphoinositide metabolic process;0.00032836323282362!GO:0005525;GTP binding;0.000352622575137208!GO:0030176;integral to endoplasmic reticulum membrane;0.000372564684423993!GO:0019867;outer membrane;0.000374393942059663!GO:0030867;rough endoplasmic reticulum membrane;0.000390473001467797!GO:0005657;replication fork;0.000393065574626254!GO:0016853;isomerase activity;0.000412630067883186!GO:0000776;kinetochore;0.000413135253055686!GO:0045786;negative regulation of progression through cell cycle;0.000431242984085684!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000439832492021113!GO:0046474;glycerophospholipid biosynthetic process;0.000477845900483074!GO:0006338;chromatin remodeling;0.000479687437877434!GO:0051252;regulation of RNA metabolic process;0.000481078503440521!GO:0048500;signal recognition particle;0.000493857467071043!GO:0006650;glycerophospholipid metabolic process;0.000494874303287637!GO:0015980;energy derivation by oxidation of organic compounds;0.000497278884561323!GO:0004298;threonine endopeptidase activity;0.000501155739828355!GO:0031252;leading edge;0.000510477937279051!GO:0006383;transcription from RNA polymerase III promoter;0.000515403198275144!GO:0004674;protein serine/threonine kinase activity;0.000517385735861184!GO:0009117;nucleotide metabolic process;0.000520232197932479!GO:0006626;protein targeting to mitochondrion;0.000577819631790815!GO:0033116;ER-Golgi intermediate compartment membrane;0.000587566133876028!GO:0016491;oxidoreductase activity;0.000601710734875288!GO:0005048;signal sequence binding;0.000623885407157068!GO:0003899;DNA-directed RNA polymerase activity;0.000626333172290086!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00066230401639414!GO:0000314;organellar small ribosomal subunit;0.00066230401639414!GO:0005763;mitochondrial small ribosomal subunit;0.00066230401639414!GO:0000075;cell cycle checkpoint;0.000671201880974586!GO:0051246;regulation of protein metabolic process;0.000672676963712201!GO:0043681;protein import into mitochondrion;0.000675606420827442!GO:0005741;mitochondrial outer membrane;0.000701036557228409!GO:0016859;cis-trans isomerase activity;0.000755539703883057!GO:0042981;regulation of apoptosis;0.000789129191833472!GO:0004004;ATP-dependent RNA helicase activity;0.00079139058357825!GO:0043067;regulation of programmed cell death;0.000836741673448674!GO:0008270;zinc ion binding;0.000838452720970911!GO:0006352;transcription initiation;0.000838452720970911!GO:0008033;tRNA processing;0.000844788088481017!GO:0030658;transport vesicle membrane;0.000870073753770842!GO:0003684;damaged DNA binding;0.000875578757857642!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000909426789467847!GO:0031982;vesicle;0.000917554943324041!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000950519398663226!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000953551279625571!GO:0003746;translation elongation factor activity;0.0009577303801816!GO:0004576;oligosaccharyl transferase activity;0.00106896309530848!GO:0003924;GTPase activity;0.00110345607607341!GO:0007006;mitochondrial membrane organization and biogenesis;0.00116566485455961!GO:0006695;cholesterol biosynthetic process;0.00117013136423939!GO:0031410;cytoplasmic vesicle;0.00117013136423939!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00121112102008044!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00121112102008044!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00121112102008044!GO:0005788;endoplasmic reticulum lumen;0.00125290225216432!GO:0000059;protein import into nucleus, docking;0.00125402037033547!GO:0030118;clathrin coat;0.00133158078569131!GO:0008250;oligosaccharyl transferase complex;0.0013742571440079!GO:0006891;intra-Golgi vesicle-mediated transport;0.00139451893233688!GO:0051920;peroxiredoxin activity;0.00140635670851129!GO:0015992;proton transport;0.00141148733571972!GO:0006611;protein export from nucleus;0.00144908487802886!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0014750523520652!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00148382787708818!GO:0043069;negative regulation of programmed cell death;0.00149066299246493!GO:0006302;double-strand break repair;0.00149973174944185!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00150006833643165!GO:0045047;protein targeting to ER;0.00150006833643165!GO:0045454;cell redox homeostasis;0.00155043757270953!GO:0043492;ATPase activity, coupled to movement of substances;0.00158181643780358!GO:0008022;protein C-terminus binding;0.00159801070802879!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00159949634497334!GO:0030660;Golgi-associated vesicle membrane;0.00160067996149413!GO:0006818;hydrogen transport;0.00168106147006725!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00169471243898393!GO:0006916;anti-apoptosis;0.00171508740206177!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00178404956622265!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00200163400555507!GO:0006284;base-excision repair;0.00200163400555507!GO:0032508;DNA duplex unwinding;0.00200163400555507!GO:0032392;DNA geometric change;0.00200163400555507!GO:0065009;regulation of a molecular function;0.00215432202748902!GO:0003711;transcription elongation regulator activity;0.00219144873275637!GO:0043066;negative regulation of apoptosis;0.0022037771952335!GO:0046983;protein dimerization activity;0.00224600444272635!GO:0046966;thyroid hormone receptor binding;0.00227173228455692!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00233831460744626!GO:0016251;general RNA polymerase II transcription factor activity;0.00235857870428502!GO:0008312;7S RNA binding;0.00245342206956856!GO:0006091;generation of precursor metabolites and energy;0.00248633272222288!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00249591614733419!GO:0043488;regulation of mRNA stability;0.00251661379761872!GO:0043487;regulation of RNA stability;0.00251661379761872!GO:0006506;GPI anchor biosynthetic process;0.00253387483820429!GO:0032561;guanyl ribonucleotide binding;0.00255370129688295!GO:0019001;guanyl nucleotide binding;0.00255370129688295!GO:0006268;DNA unwinding during replication;0.00274362942673215!GO:0016407;acetyltransferase activity;0.0028108323922299!GO:0015631;tubulin binding;0.00285566007342015!GO:0008094;DNA-dependent ATPase activity;0.00286212223626253!GO:0030133;transport vesicle;0.00287779122375624!GO:0030119;AP-type membrane coat adaptor complex;0.00301491706379492!GO:0031124;mRNA 3'-end processing;0.00301491706379492!GO:0007052;mitotic spindle organization and biogenesis;0.00310370127228242!GO:0030127;COPII vesicle coat;0.00315703276495521!GO:0012507;ER to Golgi transport vesicle membrane;0.00315703276495521!GO:0030134;ER to Golgi transport vesicle;0.00324170356925762!GO:0033673;negative regulation of kinase activity;0.00334225004196464!GO:0006469;negative regulation of protein kinase activity;0.00334225004196464!GO:0051087;chaperone binding;0.00340902280203739!GO:0044452;nucleolar part;0.00342124895555779!GO:0006354;RNA elongation;0.00343676724636915!GO:0019783;small conjugating protein-specific protease activity;0.00343676724636915!GO:0008276;protein methyltransferase activity;0.00349247101629361!GO:0008139;nuclear localization sequence binding;0.00352733219628477!GO:0016584;nucleosome positioning;0.00364726345471671!GO:0048523;negative regulation of cellular process;0.0036804232711897!GO:0009165;nucleotide biosynthetic process;0.00371903341470562!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00373378375550614!GO:0050662;coenzyme binding;0.0039621628646441!GO:0035258;steroid hormone receptor binding;0.00399180853556732!GO:0006505;GPI anchor metabolic process;0.00439739662209155!GO:0031625;ubiquitin protein ligase binding;0.00443094096250631!GO:0004843;ubiquitin-specific protease activity;0.00461267856552751!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00472606868898186!GO:0016281;eukaryotic translation initiation factor 4F complex;0.004766761019195!GO:0016197;endosome transport;0.00481604154868205!GO:0016790;thiolester hydrolase activity;0.00481604154868205!GO:0030663;COPI coated vesicle membrane;0.00505670555322579!GO:0030126;COPI vesicle coat;0.00505670555322579!GO:0046914;transition metal ion binding;0.00506824602303243!GO:0030131;clathrin adaptor complex;0.00514033883506984!GO:0005637;nuclear inner membrane;0.0052929130573395!GO:0051348;negative regulation of transferase activity;0.00537593213715831!GO:0005905;coated pit;0.00547968091938586!GO:0005684;U2-dependent spliceosome;0.00550822882456327!GO:0003678;DNA helicase activity;0.00556914945957432!GO:0007059;chromosome segregation;0.00557961231028064!GO:0018196;peptidyl-asparagine modification;0.00560915326245315!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00560915326245315!GO:0000228;nuclear chromosome;0.00600589591659856!GO:0006405;RNA export from nucleus;0.00604651225746957!GO:0000049;tRNA binding;0.00607525237206226!GO:0004221;ubiquitin thiolesterase activity;0.00609663956434055!GO:0065007;biological regulation;0.00616558721188823!GO:0022406;membrane docking;0.00616558721188823!GO:0048278;vesicle docking;0.00616558721188823!GO:0046467;membrane lipid biosynthetic process;0.00620942074766495!GO:0022890;inorganic cation transmembrane transporter activity;0.00624516956468994!GO:0000082;G1/S transition of mitotic cell cycle;0.00627177755114653!GO:0043414;biopolymer methylation;0.00683377645649268!GO:0040029;regulation of gene expression, epigenetic;0.00701873058730728!GO:0000922;spindle pole;0.00721125712478711!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00727397002332556!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00727397002332556!GO:0030137;COPI-coated vesicle;0.00752627636779696!GO:0005758;mitochondrial intermembrane space;0.00758964735901098!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00780784048448187!GO:0051052;regulation of DNA metabolic process;0.00804292057854021!GO:0005885;Arp2/3 protein complex;0.00845555823165075!GO:0006892;post-Golgi vesicle-mediated transport;0.00846171919810584!GO:0000792;heterochromatin;0.0085167457367127!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00883152076247516!GO:0015002;heme-copper terminal oxidase activity;0.00883152076247516!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00883152076247516!GO:0004129;cytochrome-c oxidase activity;0.00883152076247516!GO:0006607;NLS-bearing substrate import into nucleus;0.00924773323442803!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00964995048834716!GO:0046483;heterocycle metabolic process;0.00974346845426914!GO:0008601;protein phosphatase type 2A regulator activity;0.0101482456952995!GO:0030880;RNA polymerase complex;0.0103361454246891!GO:0030521;androgen receptor signaling pathway;0.010363262254748!GO:0042393;histone binding;0.0103757762187243!GO:0031970;organelle envelope lumen;0.0104311235610286!GO:0008017;microtubule binding;0.0104546707363863!GO:0005874;microtubule;0.0106892034914012!GO:0044454;nuclear chromosome part;0.0109270981663669!GO:0006376;mRNA splice site selection;0.0112083759748738!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0112083759748738!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0112701580073162!GO:0006289;nucleotide-excision repair;0.0112701580073162!GO:0008610;lipid biosynthetic process;0.0112701580073162!GO:0005083;small GTPase regulator activity;0.0116008553392685!GO:0032259;methylation;0.011652057321635!GO:0016279;protein-lysine N-methyltransferase activity;0.0119711393080095!GO:0018024;histone-lysine N-methyltransferase activity;0.0119711393080095!GO:0016278;lysine N-methyltransferase activity;0.0119711393080095!GO:0006904;vesicle docking during exocytosis;0.0120422648210927!GO:0007265;Ras protein signal transduction;0.0121651282610128!GO:0043284;biopolymer biosynthetic process;0.0121778482244653!GO:0031529;ruffle organization and biogenesis;0.0121778482244653!GO:0006595;polyamine metabolic process;0.0121894632140497!GO:0007017;microtubule-based process;0.0122053795176834!GO:0005791;rough endoplasmic reticulum;0.0125895009805107!GO:0031123;RNA 3'-end processing;0.0133074038199559!GO:0006378;mRNA polyadenylation;0.0133074038199559!GO:0008287;protein serine/threonine phosphatase complex;0.0136086241735619!GO:0045893;positive regulation of transcription, DNA-dependent;0.0136086241735619!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0136086241735619!GO:0030659;cytoplasmic vesicle membrane;0.0136210430138316!GO:0005669;transcription factor TFIID complex;0.0136660022243745!GO:0005869;dynactin complex;0.0137252419757162!GO:0051540;metal cluster binding;0.0138910224589242!GO:0051536;iron-sulfur cluster binding;0.0138910224589242!GO:0000096;sulfur amino acid metabolic process;0.0140512500334664!GO:0045892;negative regulation of transcription, DNA-dependent;0.0142636171768542!GO:0000209;protein polyubiquitination;0.0149579766547766!GO:0016301;kinase activity;0.0156498918337954!GO:0005773;vacuole;0.0157053826187347!GO:0000287;magnesium ion binding;0.0158346143267097!GO:0006367;transcription initiation from RNA polymerase II promoter;0.016062829878484!GO:0032940;secretion by cell;0.0162544994667624!GO:0042026;protein refolding;0.0163567037069912!GO:0048487;beta-tubulin binding;0.0163718726912436!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0164065970884342!GO:0008234;cysteine-type peptidase activity;0.0165716672992978!GO:0006516;glycoprotein catabolic process;0.0169285238716066!GO:0000118;histone deacetylase complex;0.0169285238716066!GO:0006730;one-carbon compound metabolic process;0.0169285238716066!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0169300341237578!GO:0016044;membrane organization and biogenesis;0.0169992445276059!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0170367527793521!GO:0006144;purine base metabolic process;0.0175920675826116!GO:0031901;early endosome membrane;0.0176294809433126!GO:0030518;steroid hormone receptor signaling pathway;0.0179496044249047!GO:0009112;nucleobase metabolic process;0.0180425617075619!GO:0045941;positive regulation of transcription;0.0181080874285466!GO:0031461;cullin-RING ubiquitin ligase complex;0.0183831553095239!GO:0006497;protein amino acid lipidation;0.0186624212920052!GO:0043022;ribosome binding;0.0187403522935651!GO:0030132;clathrin coat of coated pit;0.019016681831191!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0195356754675699!GO:0000428;DNA-directed RNA polymerase complex;0.0195356754675699!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.019661994774111!GO:0005832;chaperonin-containing T-complex;0.0197995978173503!GO:0004527;exonuclease activity;0.0201370538509608!GO:0004347;glucose-6-phosphate isomerase activity;0.0202370195060038!GO:0007088;regulation of mitosis;0.0211898613780617!GO:0044433;cytoplasmic vesicle part;0.0212715061663416!GO:0016125;sterol metabolic process;0.0213685094111394!GO:0051287;NAD binding;0.0215535431438529!GO:0016272;prefoldin complex;0.0216061265440018!GO:0042987;amyloid precursor protein catabolic process;0.0217210893057848!GO:0043433;negative regulation of transcription factor activity;0.0218230502530184!GO:0032200;telomere organization and biogenesis;0.0218264197645358!GO:0000723;telomere maintenance;0.0218264197645358!GO:0050178;phenylpyruvate tautomerase activity;0.0220905623922487!GO:0051338;regulation of transferase activity;0.022126821150199!GO:0000159;protein phosphatase type 2A complex;0.0224442212792974!GO:0000152;nuclear ubiquitin ligase complex;0.02372154103281!GO:0009303;rRNA transcription;0.0239532028268661!GO:0030742;GTP-dependent protein binding;0.0243095515287916!GO:0030027;lamellipodium;0.0248462458797459!GO:0031371;ubiquitin conjugating enzyme complex;0.0252156058583734!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0253015647853292!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0253932340909252!GO:0010257;NADH dehydrogenase complex assembly;0.0253932340909252!GO:0033108;mitochondrial respiratory chain complex assembly;0.0253932340909252!GO:0043407;negative regulation of MAP kinase activity;0.0257049647521375!GO:0003725;double-stranded RNA binding;0.0259001575583759!GO:0000323;lytic vacuole;0.0259864605009442!GO:0005764;lysosome;0.0259864605009442!GO:0030508;thiol-disulfide exchange intermediate activity;0.0259864605009442!GO:0044262;cellular carbohydrate metabolic process;0.0261612073062879!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0262016566583497!GO:0048037;cofactor binding;0.0276065907409648!GO:0004518;nuclease activity;0.0276065907409648!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0276322999552228!GO:0006310;DNA recombination;0.028299019406958!GO:0005784;translocon complex;0.0286024975446327!GO:0042770;DNA damage response, signal transduction;0.0288355179375757!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0288643729654093!GO:0007243;protein kinase cascade;0.0290140367509593!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0297966315691039!GO:0042054;histone methyltransferase activity;0.0299178887571328!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0309038219138113!GO:0007004;telomere maintenance via telomerase;0.0314344108279552!GO:0009451;RNA modification;0.0314482470705783!GO:0005777;peroxisome;0.0322196852571293!GO:0042579;microbody;0.0322196852571293!GO:0012506;vesicle membrane;0.0323910232573774!GO:0044438;microbody part;0.0329712790775673!GO:0044439;peroxisomal part;0.0329712790775673!GO:0030911;TPR domain binding;0.0333063959026515!GO:0000726;non-recombinational repair;0.0336407127086732!GO:0008180;signalosome;0.0340009174137377!GO:0004722;protein serine/threonine phosphatase activity;0.0340696853195022!GO:0050790;regulation of catalytic activity;0.0340799300245402!GO:0043549;regulation of kinase activity;0.0346246564320887!GO:0042979;ornithine decarboxylase regulator activity;0.0348368585545898!GO:0031628;opioid receptor binding;0.0348838559501682!GO:0031852;mu-type opioid receptor binding;0.0348838559501682!GO:0048519;negative regulation of biological process;0.0358693930920099!GO:0019318;hexose metabolic process;0.0359596919934361!GO:0005996;monosaccharide metabolic process;0.036575136030446!GO:0000781;chromosome, telomeric region;0.0369573577323063!GO:0000339;RNA cap binding;0.037404206939131!GO:0006066;alcohol metabolic process;0.037404206939131!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0377610369106671!GO:0051059;NF-kappaB binding;0.0389130141309254!GO:0008097;5S rRNA binding;0.0389482252670967!GO:0008536;Ran GTPase binding;0.0390280999652204!GO:0008361;regulation of cell size;0.0391845178828736!GO:0051539;4 iron, 4 sulfur cluster binding;0.0394927795004764!GO:0032039;integrator complex;0.0398709249565301!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0414005077761399!GO:0007010;cytoskeleton organization and biogenesis;0.0422843627869687!GO:0005092;GDP-dissociation inhibitor activity;0.0424464981178963!GO:0008652;amino acid biosynthetic process;0.0425981283965335!GO:0008299;isoprenoid biosynthetic process;0.0425981283965335!GO:0031902;late endosome membrane;0.0428042160613945!GO:0000790;nuclear chromatin;0.0445239486832881!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0450545906997772!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0450545906997772!GO:0055083;monovalent inorganic anion homeostasis;0.0450545906997772!GO:0055064;chloride ion homeostasis;0.0450545906997772!GO:0030644;cellular chloride ion homeostasis;0.0450545906997772!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0451048643493702!GO:0042158;lipoprotein biosynthetic process;0.0452891967018339!GO:0051656;establishment of organelle localization;0.0455920842653193!GO:0009081;branched chain family amino acid metabolic process;0.0459829185540854!GO:0007093;mitotic cell cycle checkpoint;0.046756547580527!GO:0006644;phospholipid metabolic process;0.0469737535442109!GO:0003887;DNA-directed DNA polymerase activity;0.0470129128700741!GO:0000123;histone acetyltransferase complex;0.047079888393956!GO:0009083;branched chain family amino acid catabolic process;0.0473504845216697!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0475641304515768!GO:0030125;clathrin vesicle coat;0.0477626170353577!GO:0030665;clathrin coated vesicle membrane;0.0477626170353577!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0483391303134581!GO:0004448;isocitrate dehydrogenase activity;0.0486529220907842!GO:0007034;vacuolar transport;0.0489373202370858!GO:0016049;cell growth;0.049307593913393!GO:0006010;glucose 6-phosphate utilization;0.0493625156500823!GO:0005047;signal recognition particle binding;0.0496914726333977 | |||
|sample_id=10419 | |sample_id=10419 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 99: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=ZEB1:2.28011194717;VSX1,2:2.01107721212;SNAI1..3:1.88524591428;MYOD1:1.82323102979;FOXQ1:1.66527553243;NFY{A,B,C}:1.62709208286;FOXA2:1.56444170504;RBPJ:1.43250354671;TOPORS:1.25961521968;PITX1..3:1.24842663179;LMO2:1.224758103;ARID5B:1.22031706561;FOXN1:1.18199801343;IKZF1:1.1777204515;TEF:1.17227039804;NKX2-3_NKX2-5:1.12979705192;NRF1:1.05496596196;PDX1:1.048657386;FOX{F1,F2,J1}:1.03397694696;POU2F1..3:1.01741560447;CRX:1.00720370089;ELK1,4_GABP{A,B1}:0.992598565314;ONECUT1,2:0.988704007716;ADNP_IRX_SIX_ZHX:0.939679654549;STAT1,3:0.939615811883;HOX{A4,D4}:0.930515466709;bHLH_family:0.923730578444;DBP:0.871090593961;PBX1:0.844880633634;RORA:0.768548655625;SP1:0.737499232985;LHX3,4:0.729955654458;NKX6-1,2:0.637497848816;ZNF143:0.634336161916;FOXP1:0.624261787264;RFX2..5_RFXANK_RFXAP:0.616388584844;ATF2:0.599862685988;SOX{8,9,10}:0.591305974585;TFDP1:0.567472313814;E2F1..5:0.512343527943;PAX6:0.510710344229;STAT5{A,B}:0.509297488732;BREu{core}:0.492147908093;ZFP161:0.443094414153;HIF1A:0.438699136566;ESR1:0.430040582091;MYB:0.407628681176;NFIL3:0.3874969076;OCT4_SOX2{dimer}:0.379289029575;SOX5:0.365683796616;MED-1{core}:0.342193661129;HOX{A5,B5}:0.338252533231;FOXO1,3,4:0.332326649455;NANOG:0.322940710289;YY1:0.287076145953;PAX5:0.259640844094;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.245701913768;GFI1:0.245662521155;PPARG:0.214251838037;ATF6:0.200928152514;PAX8:0.196002848326;TEAD1:0.191351551406;GFI1B:0.174593924613;CDC5L:0.172342806101;EVI1:0.168561841673;FOX{I1,J2}:0.166937923694;TFAP2{A,C}:0.14902499413;AHR_ARNT_ARNT2:0.148347969019;NKX2-1,4:0.129526671513;RFX1:0.10973241821;NR1H4:0.093655652631;NFIX:0.0753380929426;AR:0.0671195149121;HOX{A6,A7,B6,B7}:0.0455346939474;NKX3-2:0.0224283504795;EBF1:0.0156554423561;ZNF148:0.0139413236677;ELF1,2,4:0.00823614441322;IKZF2:0.00249232639879;HNF1A:0.00103261433665;TBX4,5:-0.00201009887516;PAX2:-0.00621210463525;GATA6:-0.00989681053349;TFAP2B:-0.0110227983021;POU5F1:-0.0119769358486;POU1F1:-0.0123887856724;HIC1:-0.0183236648701;LEF1_TCF7_TCF7L1,2:-0.0184658213246;GTF2A1,2:-0.0187483870245;TLX1..3_NFIC{dimer}:-0.0285854106213;ATF4:-0.0333953117394;TBP:-0.038579177632;CUX2:-0.0393637820048;SOX17:-0.0608026954802;ATF5_CREB3:-0.071070587928;FOX{D1,D2}:-0.0748142122254;FOSL2:-0.0873662460824;HNF4A_NR2F1,2:-0.0889870508734;NKX3-1:-0.0904701057517;ZBTB6:-0.11549283717;HAND1,2:-0.11577058907;PAX3,7:-0.120408612832;EP300:-0.134715088365;RXRA_VDR{dimer}:-0.140111808947;FOXM1:-0.140950364601;TP53:-0.144639998968;PRRX1,2:-0.152627667119;MAFB:-0.166357088169;FOXP3:-0.184670722505;HOXA9_MEIS1:-0.191440720065;CDX1,2,4:-0.195147328715;EGR1..3:-0.201990989425;GTF2I:-0.216189106524;MEF2{A,B,C,D}:-0.216520257972;FOS_FOS{B,L1}_JUN{B,D}:-0.221282160922;FOXL1:-0.222663190094;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.233083724835;ESRRA:-0.238259484695;ZIC1..3:-0.244492573509;ALX1:-0.26523429818;HLF:-0.280481265297;ZBTB16:-0.281451400999;XBP1:-0.284914873931;SOX2:-0.289171284065;TAL1_TCF{3,4,12}:-0.306768484546;MTE{core}:-0.322171669979;EN1,2:-0.324151128885;HSF1,2:-0.328403098446;NR5A1,2:-0.329727688879;NFE2L2:-0.341288933266;ZNF423:-0.349485669123;PATZ1:-0.353545906771;NR6A1:-0.362759793435;BACH2:-0.375448588349;TGIF1:-0.400044162389;NANOG{mouse}:-0.406496422916;BPTF:-0.429298135823;DMAP1_NCOR{1,2}_SMARC:-0.433613662254;MTF1:-0.457292811593;JUN:-0.478582880593;SPIB:-0.489102062876;RUNX1..3:-0.49060257009;PAX4:-0.508556328233;NFE2:-0.520250655941;NFKB1_REL_RELA:-0.521074098741;XCPE1{core}:-0.53859280269;MAZ:-0.541535753943;KLF4:-0.543617013585;TLX2:-0.552706439881;HMGA1,2:-0.558640439873;SREBF1,2:-0.590505427143;REST:-0.603658137274;SPI1:-0.613078041451;T:-0.628501953459;CEBPA,B_DDIT3:-0.667221175612;SRF:-0.716445010994;HBP1_HMGB_SSRP1_UBTF:-0.721169033891;ETS1,2:-0.728893149865;RREB1:-0.729958034672;GZF1:-0.737194114191;NHLH1,2:-0.752902662054;TFCP2:-0.756900808627;IRF7:-0.759610279976;ZNF384:-0.782935819642;MYBL2:-0.786303721755;IRF1,2:-0.807655113532;FOXD3:-0.813750753976;UFEwm:-0.836352297951;MYFfamily:-0.840729403708;ALX4:-0.848135663711;HMX1:-0.851906334566;POU3F1..4:-0.89050198281;TFAP4:-0.901846859867;GCM1,2:-0.909361934898;PAX1,9:-0.91482209921;MZF1:-0.923748620471;ZNF238:-0.926609275465;CREB1:-0.956948864159;NR3C1:-1.01894912717;POU6F1:-1.02163415222;GATA4:-1.07851381793;NFATC1..3:-1.18553803971;SPZ1:-1.26270802414;PRDM1:-1.29924626465;AIRE:-1.34774021365;STAT2,4,6:-1.35647724762;NKX2-2,8:-1.4288937926;NFE2L1:-1.51959816569;SMAD1..7,9:-1.54047406471;HES1:-1.92452317903;RXR{A,B,G}:-2.03835033977;GLI1..3:-2.42184901851 | |top_motifs=ZEB1:2.28011194717;VSX1,2:2.01107721212;SNAI1..3:1.88524591428;MYOD1:1.82323102979;FOXQ1:1.66527553243;NFY{A,B,C}:1.62709208286;FOXA2:1.56444170504;RBPJ:1.43250354671;TOPORS:1.25961521968;PITX1..3:1.24842663179;LMO2:1.224758103;ARID5B:1.22031706561;FOXN1:1.18199801343;IKZF1:1.1777204515;TEF:1.17227039804;NKX2-3_NKX2-5:1.12979705192;NRF1:1.05496596196;PDX1:1.048657386;FOX{F1,F2,J1}:1.03397694696;POU2F1..3:1.01741560447;CRX:1.00720370089;ELK1,4_GABP{A,B1}:0.992598565314;ONECUT1,2:0.988704007716;ADNP_IRX_SIX_ZHX:0.939679654549;STAT1,3:0.939615811883;HOX{A4,D4}:0.930515466709;bHLH_family:0.923730578444;DBP:0.871090593961;PBX1:0.844880633634;RORA:0.768548655625;SP1:0.737499232985;LHX3,4:0.729955654458;NKX6-1,2:0.637497848816;ZNF143:0.634336161916;FOXP1:0.624261787264;RFX2..5_RFXANK_RFXAP:0.616388584844;ATF2:0.599862685988;SOX{8,9,10}:0.591305974585;TFDP1:0.567472313814;E2F1..5:0.512343527943;PAX6:0.510710344229;STAT5{A,B}:0.509297488732;BREu{core}:0.492147908093;ZFP161:0.443094414153;HIF1A:0.438699136566;ESR1:0.430040582091;MYB:0.407628681176;NFIL3:0.3874969076;OCT4_SOX2{dimer}:0.379289029575;SOX5:0.365683796616;MED-1{core}:0.342193661129;HOX{A5,B5}:0.338252533231;FOXO1,3,4:0.332326649455;NANOG:0.322940710289;YY1:0.287076145953;PAX5:0.259640844094;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.245701913768;GFI1:0.245662521155;PPARG:0.214251838037;ATF6:0.200928152514;PAX8:0.196002848326;TEAD1:0.191351551406;GFI1B:0.174593924613;CDC5L:0.172342806101;EVI1:0.168561841673;FOX{I1,J2}:0.166937923694;TFAP2{A,C}:0.14902499413;AHR_ARNT_ARNT2:0.148347969019;NKX2-1,4:0.129526671513;RFX1:0.10973241821;NR1H4:0.093655652631;NFIX:0.0753380929426;AR:0.0671195149121;HOX{A6,A7,B6,B7}:0.0455346939474;NKX3-2:0.0224283504795;EBF1:0.0156554423561;ZNF148:0.0139413236677;ELF1,2,4:0.00823614441322;IKZF2:0.00249232639879;HNF1A:0.00103261433665;TBX4,5:-0.00201009887516;PAX2:-0.00621210463525;GATA6:-0.00989681053349;TFAP2B:-0.0110227983021;POU5F1:-0.0119769358486;POU1F1:-0.0123887856724;HIC1:-0.0183236648701;LEF1_TCF7_TCF7L1,2:-0.0184658213246;GTF2A1,2:-0.0187483870245;TLX1..3_NFIC{dimer}:-0.0285854106213;ATF4:-0.0333953117394;TBP:-0.038579177632;CUX2:-0.0393637820048;SOX17:-0.0608026954802;ATF5_CREB3:-0.071070587928;FOX{D1,D2}:-0.0748142122254;FOSL2:-0.0873662460824;HNF4A_NR2F1,2:-0.0889870508734;NKX3-1:-0.0904701057517;ZBTB6:-0.11549283717;HAND1,2:-0.11577058907;PAX3,7:-0.120408612832;EP300:-0.134715088365;RXRA_VDR{dimer}:-0.140111808947;FOXM1:-0.140950364601;TP53:-0.144639998968;PRRX1,2:-0.152627667119;MAFB:-0.166357088169;FOXP3:-0.184670722505;HOXA9_MEIS1:-0.191440720065;CDX1,2,4:-0.195147328715;EGR1..3:-0.201990989425;GTF2I:-0.216189106524;MEF2{A,B,C,D}:-0.216520257972;FOS_FOS{B,L1}_JUN{B,D}:-0.221282160922;FOXL1:-0.222663190094;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.233083724835;ESRRA:-0.238259484695;ZIC1..3:-0.244492573509;ALX1:-0.26523429818;HLF:-0.280481265297;ZBTB16:-0.281451400999;XBP1:-0.284914873931;SOX2:-0.289171284065;TAL1_TCF{3,4,12}:-0.306768484546;MTE{core}:-0.322171669979;EN1,2:-0.324151128885;HSF1,2:-0.328403098446;NR5A1,2:-0.329727688879;NFE2L2:-0.341288933266;ZNF423:-0.349485669123;PATZ1:-0.353545906771;NR6A1:-0.362759793435;BACH2:-0.375448588349;TGIF1:-0.400044162389;NANOG{mouse}:-0.406496422916;BPTF:-0.429298135823;DMAP1_NCOR{1,2}_SMARC:-0.433613662254;MTF1:-0.457292811593;JUN:-0.478582880593;SPIB:-0.489102062876;RUNX1..3:-0.49060257009;PAX4:-0.508556328233;NFE2:-0.520250655941;NFKB1_REL_RELA:-0.521074098741;XCPE1{core}:-0.53859280269;MAZ:-0.541535753943;KLF4:-0.543617013585;TLX2:-0.552706439881;HMGA1,2:-0.558640439873;SREBF1,2:-0.590505427143;REST:-0.603658137274;SPI1:-0.613078041451;T:-0.628501953459;CEBPA,B_DDIT3:-0.667221175612;SRF:-0.716445010994;HBP1_HMGB_SSRP1_UBTF:-0.721169033891;ETS1,2:-0.728893149865;RREB1:-0.729958034672;GZF1:-0.737194114191;NHLH1,2:-0.752902662054;TFCP2:-0.756900808627;IRF7:-0.759610279976;ZNF384:-0.782935819642;MYBL2:-0.786303721755;IRF1,2:-0.807655113532;FOXD3:-0.813750753976;UFEwm:-0.836352297951;MYFfamily:-0.840729403708;ALX4:-0.848135663711;HMX1:-0.851906334566;POU3F1..4:-0.89050198281;TFAP4:-0.901846859867;GCM1,2:-0.909361934898;PAX1,9:-0.91482209921;MZF1:-0.923748620471;ZNF238:-0.926609275465;CREB1:-0.956948864159;NR3C1:-1.01894912717;POU6F1:-1.02163415222;GATA4:-1.07851381793;NFATC1..3:-1.18553803971;SPZ1:-1.26270802414;PRDM1:-1.29924626465;AIRE:-1.34774021365;STAT2,4,6:-1.35647724762;NKX2-2,8:-1.4288937926;NFE2L1:-1.51959816569;SMAD1..7,9:-1.54047406471;HES1:-1.92452317903;RXR{A,B,G}:-2.03835033977;GLI1..3:-2.42184901851 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10419-106C5;search_select_hide=table117:FF:10419-106C5 | |||
}} | }} | ||
Latest revision as of 14:00, 3 June 2020
| Name: | breast carcinoma cell line:MDA-MB-453 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10736 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10736
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10736
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.77 |
| 10 | 10 | 0.471 |
| 100 | 100 | 0.679 |
| 101 | 101 | 0.392 |
| 102 | 102 | 0.919 |
| 103 | 103 | 0.072 |
| 104 | 104 | 0.472 |
| 105 | 105 | 0.949 |
| 106 | 106 | 0.00551 |
| 107 | 107 | 0.0446 |
| 108 | 108 | 0.975 |
| 109 | 109 | 0.739 |
| 11 | 11 | 0.374 |
| 110 | 110 | 0.65 |
| 111 | 111 | 0.528 |
| 112 | 112 | 0.146 |
| 113 | 113 | 0.0462 |
| 114 | 114 | 0.231 |
| 115 | 115 | 0.205 |
| 116 | 116 | 0.23 |
| 117 | 117 | 0.246 |
| 118 | 118 | 0.28 |
| 119 | 119 | 0.959 |
| 12 | 12 | 0.721 |
| 120 | 120 | 0.653 |
| 121 | 121 | 0.213 |
| 122 | 122 | 0.0881 |
| 123 | 123 | 0.277 |
| 124 | 124 | 0.097 |
| 125 | 125 | 0.243 |
| 126 | 126 | 0.969 |
| 127 | 127 | 0.775 |
| 128 | 128 | 0.0255 |
| 129 | 129 | 0.887 |
| 13 | 13 | 0.113 |
| 130 | 130 | 0.357 |
| 131 | 131 | 0.164 |
| 132 | 132 | 0.221 |
| 133 | 133 | 0.277 |
| 134 | 134 | 0.818 |
| 135 | 135 | 0.147 |
| 136 | 136 | 0.0977 |
| 137 | 137 | 0.317 |
| 138 | 138 | 0.225 |
| 139 | 139 | 0.88 |
| 14 | 14 | 0.757 |
| 140 | 140 | 0.144 |
| 141 | 141 | 0.911 |
| 142 | 142 | 0.817 |
| 143 | 143 | 0.168 |
| 144 | 144 | 0.0441 |
| 145 | 145 | 0.189 |
| 146 | 146 | 0.725 |
| 147 | 147 | 0.334 |
| 148 | 148 | 0.223 |
| 149 | 149 | 0.114 |
| 15 | 15 | 0.704 |
| 150 | 150 | 0.948 |
| 151 | 151 | 0.287 |
| 152 | 152 | 0.0454 |
| 153 | 153 | 0.705 |
| 154 | 154 | 0.882 |
| 155 | 155 | 0.135 |
| 156 | 156 | 0.17 |
| 157 | 157 | 0.821 |
| 158 | 158 | 0.971 |
| 159 | 159 | 0.903 |
| 16 | 16 | 0.189 |
| 160 | 160 | 0.23 |
| 161 | 161 | 0.824 |
| 162 | 162 | 0.761 |
| 163 | 163 | 0.311 |
| 164 | 164 | 0.875 |
| 165 | 165 | 0.649 |
| 166 | 166 | 0.0119 |
| 167 | 167 | 0.944 |
| 168 | 168 | 0.00152 |
| 169 | 169 | 0.675 |
| 17 | 17 | 0.999 |
| 18 | 18 | 0.0347 |
| 19 | 19 | 0.211 |
| 2 | 2 | 0.253 |
| 20 | 20 | 0.259 |
| 21 | 21 | 0.415 |
| 22 | 22 | 0.515 |
| 23 | 23 | 0.0523 |
| 24 | 24 | 0.571 |
| 25 | 25 | 0.608 |
| 26 | 26 | 0.811 |
| 27 | 27 | 0.78 |
| 28 | 28 | 0.603 |
| 29 | 29 | 0.261 |
| 3 | 3 | 0.244 |
| 30 | 30 | 0.547 |
| 31 | 31 | 0.337 |
| 32 | 32 | 0.0588 |
| 33 | 33 | 0.93 |
| 34 | 34 | 0.134 |
| 35 | 35 | 0.254 |
| 36 | 36 | 0.529 |
| 37 | 37 | 0.0785 |
| 38 | 38 | 0.573 |
| 39 | 39 | 0.746 |
| 4 | 4 | 0.582 |
| 40 | 40 | 0.634 |
| 41 | 41 | 0.0741 |
| 42 | 42 | 0.761 |
| 43 | 43 | 0.0918 |
| 44 | 44 | 0.183 |
| 45 | 45 | 0.966 |
| 46 | 46 | 0.244 |
| 47 | 47 | 0.904 |
| 48 | 48 | 0.892 |
| 49 | 49 | 0.536 |
| 5 | 5 | 0.373 |
| 50 | 50 | 0.889 |
| 51 | 51 | 0.685 |
| 52 | 52 | 0.222 |
| 53 | 53 | 0.725 |
| 54 | 54 | 0.672 |
| 55 | 55 | 0.473 |
| 56 | 56 | 0.494 |
| 57 | 57 | 0.858 |
| 58 | 58 | 0.435 |
| 59 | 59 | 0.0158 |
| 6 | 6 | 0.313 |
| 60 | 60 | 0.077 |
| 61 | 61 | 0.614 |
| 62 | 62 | 0.115 |
| 63 | 63 | 0.937 |
| 64 | 64 | 0.99 |
| 65 | 65 | 0.258 |
| 66 | 66 | 0.00362 |
| 67 | 67 | 0.224 |
| 68 | 68 | 0.0612 |
| 69 | 69 | 0.515 |
| 7 | 7 | 0.874 |
| 70 | 70 | 0.255 |
| 71 | 71 | 0.449 |
| 72 | 72 | 0.341 |
| 73 | 73 | 0.224 |
| 74 | 74 | 0.18 |
| 75 | 75 | 0.203 |
| 76 | 76 | 0.893 |
| 77 | 77 | 0.237 |
| 78 | 78 | 0.57 |
| 79 | 79 | 0.0132 |
| 8 | 8 | 0.122 |
| 80 | 80 | 0.193 |
| 81 | 81 | 0.101 |
| 82 | 82 | 0.0547 |
| 83 | 83 | 0.469 |
| 84 | 84 | 0.912 |
| 85 | 85 | 0.0517 |
| 86 | 86 | 0.658 |
| 87 | 87 | 0.168 |
| 88 | 88 | 0.614 |
| 89 | 89 | 0.268 |
| 9 | 9 | 0.106 |
| 90 | 90 | 0.162 |
| 91 | 91 | 0.179 |
| 92 | 92 | 0.0797 |
| 93 | 93 | 0.411 |
| 94 | 94 | 0.318 |
| 95 | 95 | 0.315 |
| 96 | 96 | 0.0784 |
| 97 | 97 | 0.622 |
| 98 | 98 | 0.253 |
| 99 | 99 | 0.692 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10736
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101908 MDA-MB-453 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
1612 (breast cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001443 (chest)
0003100 (female organism)
0000915 (thoracic segment of trunk)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0104086 (mammary gland tumor cell line sample)
0100356 (breast cancer cell line sample)
0103568 (mammary gland cell line sample)
0101908 (MDA-MB-453 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0008425 (mammary ridge)
UBERON:0010316 (germ layer / neural crest)
