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FF:11302-117B6: Difference between revisions

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|def=
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.29!194.47!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.46!TP63;;chr11:34642612..34642646,+!p1@EHF!2.13!132.83!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.09!137.46!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.87!72.55!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.85!70.37!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.79!60.28!HES2;;chr8:10588010..10588030,-!p1@SOX7!1.72!51.00!SOX7;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.28!BNC1;;chr15:101069113..101069169,-!p1@CERS3!1.59!37.64!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.56!39.55!ZNF385A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!34.91!ZBED1;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.73!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!50.73!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.46!42.00!ZNF385A;;chr5:134369905..134369972,-!p1@PITX1!1.38!35.18!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.35!44.73!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.31!19.36!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!1.28!18.27!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!1.23!146.46!HMGA2;;chr11:34642656..34642667,+!p2@EHF!1.23!15.82!EHF;;chr9:100615499..100615519,+!p1@FOXE1!1.21!15.27!FOXE1;;chr12:66218598..66218645,+!p2@HMGA2!1.20!67.10!HMGA2;;chr4:57547454..57547469,-!p1@HOPX!1.20!14.73!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!1.17!87.28!SNAI2;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.09!GRHL2;;chr8:49833978..49833996,-!p1@SNAI2!1.13!254.47!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.13!34.64!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.10!11.73!PITX1;;chr11:34645791..34645836,+!p3@EHF!1.10!11.73!EHF;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.46!HMGA2;;chr17:80797886..80797906,-!p1@ZNF750!1.03!9.82!ZNF750;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.55!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!78.55!PPP1R13L;;chr16:67881588..67881612,-!p2@CENPT!0.98!11.73!CENPT;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.64!ARNTL2;;chr15:83953373..83953386,-!p2@BNC1!0.96!8.18!BNC1;;chr12:66218003..66218018,+!p9@HMGA2!0.95!9.82!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!0.94!22.09!POU2F2;;chr1:209979449..209979460,-!p3@IRF6!0.94!7.64!IRF6;;chr6:34524093..34524135,-!p1@SPDEF!0.94!7.64!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!0.94!7.64!TBX1;;chr1:24645832..24645853,+!p1@GRHL3!0.91!7.09!GRHL3;;chr3:141121847..141121868,+!p5@ZBTB38!0.90!10.91!ZBTB38;;chr2:122042770..122042785,-!p1@TFCP2L1!0.89!6.82!TFCP2L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr1:158979792..158979814,+!p2@IFI16!0.87!65.19!IFI16;;chr20:55204351..55204377,+!p1@TFAP2C!0.86!8.18!TFAP2C;;chr12:66218183..66218209,+!p4@HMGA2!0.84!11.73!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.73!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.83!5.73!C14orf43;;chr11:65686802..65686818,+!p6@DRAP1!0.82!10.09!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.82!8.46!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.82!DRAP1;;chr12:66218923..66218934,+!p14@HMGA2!0.81!5.45!HMGA2;;chr17:45928521..45928539,-!p1@SP6!0.81!5.45!SP6;;chr13:73633131..73633149,+!p1@KLF5!0.80!62.19!KLF5;;chr2:208030647..208030689,-!p1@KLF7!0.80!47.73!KLF7;;chr12:48298765..48298783,-!p2@VDR!0.80!11.73!VDR;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.00!ETV4;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!67.37!ZC3H12A;;chr21:36421535..36421610,-!p2@RUNX1!0.77!18.82!RUNX1;;chr1:209979375..209979386,-!p4@IRF6!0.77!4.91!IRF6;;chr1:24645921..24645973,+!p2@GRHL3!0.77!4.91!GRHL3;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.91!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.77!4.91!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.75!4.64!ZNF323;;chr4:111544219..111544240,-!p1@PITX2!0.75!4.64!PITX2;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.64!FOXD1;;chr12:66218573..66218596,+!p7@HMGA2!0.74!7.09!HMGA2;;chr19:57792157..57792170,+!p6@ZNF460!0.74!6.82!ZNF460;;chr19:9811347..9811351,-!p1@ZNF812!0.73!4.36!ZNF812;;chr5:1887070..1887114,-!p1@IRX4!0.73!4.36!IRX4;;chr12:66218378..66218401,+!p6@HMGA2!0.71!6.82!HMGA2;;chr11:129245526..129245553,+!p1@BARX2!0.71!4.09!BARX2;;chr3:189507460..189507471,+!p3@TP63!0.71!4.09!TP63;;chr15:67458861..67458879,+!p17@SMAD3!0.71!4.09!SMAD3;;chr2:70142232..70142251,+!p1@MXD1!0.70!25.64!MXD1;;chr16:79634624..79634642,-!p1@MAF!0.69!17.18!MAF;;chr2:231084639..231084654,-!p2@SP110!0.69!6.82!SP110;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.36!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!0.68!3.82!IRX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.68!3.82!TFAP2A;;chr7:139762578..139762589,-!p2@PARP12!0.68!3.82!PARP12;;chr15:101069102..101069112,-!p2@CERS3!0.68!3.82!CERS3;;chr1:203764633..203764674,+!p2@ZC3H11A!0.67!6.27!ZC3H11A;;chr12:77459306..77459365,-!p1@E2F7!0.66!52.09!E2F7;;chr17:70117153..70117174,+!p1@SOX9!0.66!43.09!SOX9;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.27!IFI16;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.73!ETV4;;chr15:67418047..67418093,+!p4@SMAD3!0.66!4.64!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.55!FOXL1;;chr3:32023232..32023273,+!p1@ZNF860!0.65!5.18!ZNF860;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr15:101069186..101069200,-!p4@CERS3!0.63!3.27!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.63!3.27!SP6;;chr6:34524049..34524089,-!p2@SPDEF!0.63!3.27!SPDEF;;chr11:65667846..65667868,-!p1@FOSL1!0.62!101.19!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.62!25.91!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.62!7.36!PCBP1;;chr14:21566731..21566836,-!p1@ZNF219!0.61!39.55!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.60!25.64!ELK3;;chr12:27485823..27485868,+!p2@ARNTL2!0.60!14.18!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.91!ETV4;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.00!SMAD3;;chr6:10419824..10419840,-!p9@TFAP2A!0.60!3.00!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.60!3.00!SPDEF;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.60!3.00!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.60!3.00!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.60!3.00!ZBTB38;;chr3:189507523..189507535,+!p5@TP63!0.60!3.00!TP63;;chr12:48298785..48298828,-!p1@VDR!0.59!18.55!VDR;;chr6:126240380..126240430,+!p2@NCOA7!0.59!8.73!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.58!249.56!TAX1BP3;;chr16:54320158..54320200,-!p5@IRX3!0.58!4.36!IRX3;;chr18:3449720..3449749,+!p2@TGIF1!0.57!6.55!TGIF1;;chrX:56258844..56258882,+!p1@KLF8!0.57!4.09!KLF8;;chr15:83953474..83953483,-!p3@BNC1!0.57!2.73!BNC1;;chr16:67881617..67881626,-!p6@CENPT!0.57!2.73!CENPT;;chr16:67881647..67881663,-!p3@CENPT!0.57!2.73!CENPT;;chr17:41622731..41622764,-!p5@ETV4!0.57!2.73!ETV4;;chr5:1887052..1887065,-!p2@IRX4!0.57!2.73!IRX4;;chr11:65554528..65554546,+!p1@OVOL1!0.57!2.73!OVOL1;;chr2:46524878..46524891,+!p3@EPAS1!0.56!5.18!EPAS1;;chr16:68573640..68573660,+!p3@ZFP90!0.56!3.82!ZFP90;;chr2:60780607..60780624,-!p2@BCL11A!0.55!9.27!BCL11A;;chr19:58326246..58326262,-!p2@ZNF552!0.55!7.09!ZNF552;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.27!TBX18;;chr10:3827389..3827408,-!p1@KLF6!0.54!242.47!KLF6;;chr14:62162285..62162296,+!p3@HIF1A!0.54!15.82!HIF1A;;chr7:44143978..44143989,+!p2@AEBP1!0.54!5.18!AEBP1;;chr6:28048343..28048354,+!p1@ZNF165!0.54!2.45!ZNF165;;chr6:28321909..28321965,-!p3@ZNF323!0.54!2.45!ZNF323;;chr4:299227..299272,-!p1@ZNF732!0.54!2.45!ZNF732;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.45!ZNF668;;chr17:48072574..48072597,-!p1@DLX3!0.54!2.45!DLX3;;chr17:7492979..7492991,-!p5@SOX15!0.54!2.45!SOX15;;chr20:55205825..55205847,+!p2@TFAP2C!0.54!2.45!TFAP2C;;chr13:41593425..41593480,-!p1@ELF1!0.53!19.36!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.53!12.27!LRRFIP2;;chr19:37341160..37341194,-!p2@ZNF790!0.53!6.00!ZNF790;;chr19:53496768..53496799,-!p1@ZNF702P!0.53!4.09!ZNF702P;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.73!SMAD3;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.00!IFI16;;chr6:126240356..126240379,+!p7@NCOA7!0.52!3.00!NCOA7;;chr6:21593973..21593988,+!p1@SOX4!0.51!105.28!SOX4;;chr6:106534192..106534224,+!p1@PRDM1!0.51!7.64!PRDM1;;chr2:10091815..10091864,+!p1@GRHL1!0.51!3.27!GRHL1;;chr10:51572408..51572454,+!p3@NCOA4!0.50!16.36!NCOA4;;chr4:87857474..87857489,+!p7@AFF1!0.50!4.36!AFF1;;chr2:46612891..46612907,+!p10@EPAS1!0.50!2.18!EPAS1;;chr4:111558135..111558198,-!p2@PITX2!0.50!2.18!PITX2;;chr10:64018918..64018936,+!p2@ZNF365!0.50!2.18!ZNF365;;chr1:2461692..2461710,-!p1@HES5!0.50!2.18!HES5;;chr20:22565185..22565223,-!p3@FOXA2!0.50!2.18!FOXA2;;chr20:50722202..50722217,-!p7@ZFP64!0.50!2.18!ZFP64;;chr2:85360499..85360598,+!p1@TCF7L1!0.49!15.27!TCF7L1;;chr6:15246200..15246214,+!p2@JARID2!0.49!7.09!JARID2;;chr12:96588279..96588299,+!p4@ELK3!0.48!12.55!ELK3;;chr6:1312325..1312340,+!p1@FOXQ1!0.48!3.82!FOXQ1;;chr20:6748325..6748352,+!p1@BMP2!0.48!3.27!BMP2;;chr3:5021026..5021035,+!p5@BHLHE40!0.48!2.73!BHLHE40;;chr14:62162258..62162269,+!p2@HIF1A!0.47!25.64!HIF1A;;chr12:66218443..66218461,+!p8@HMGA2!0.47!2.73!HMGA2;;chr11:47236584..47236679,+!p1@DDB2!0.46!28.09!DDB2;;chr22:42229210..42229229,+!p3@SREBF2!0.46!5.45!SREBF2;;chr16:79634595..79634620,-!p2@MAF!0.46!4.09!MAF;;chr21:36260295..36260310,-!p3@RUNX1!0.46!3.55!RUNX1;;chr19:42636625..42636632,-!p2@POU2F2!0.46!1.91!POU2F2;;chr1:24646263..24646277,+!p4@GRHL3!0.46!1.91!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.46!1.91!OVOL2;;chr11:34643638..34643667,+!p8@EHF!0.46!1.91!EHF;;chr12:66357317..66357328,+!p19@HMGA2!0.46!1.91!HMGA2;;chr5:134369643..134369675,-!p4@PITX1!0.46!1.91!PITX1;;chr5:139492456..139492489,+!p7@PURA!0.46!1.91!PURA;;chr6:10412640..10412655,-!p14@TFAP2A!0.46!1.91!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.46!1.91!GRHL2;;chrX:56258900..56258917,+!p4@KLF8!0.46!1.91!KLF8;;chr3:69811858..69811881,+!p5@MITF!0.46!1.91!MITF;;chr12:80084303..80084332,-!p1@PAWR!0.45!14.46!PAWR;;chr19:45579725..45579743,-!p1@ZNF296!0.45!10.91!ZNF296;;chr19:9785724..9785740,-!p2@ZNF562!0.45!9.55!ZNF562;;chr4:4291837..4291859,-!p2@LYAR!0.45!7.64!LYAR;;chr5:43067636..43067674,+!p6@ZNF131!0.45!2.73!ZNF131;;chr1:151032739..151032748,+!p6@MLLT11!0.45!2.45!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.44!4.36!MLLT11;;chr6:21597514..21597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NF860;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr15:101069186..101069200,-!p4@CERS3!0.63!3.27!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.63!3.27!SP6;;chr6:34524049..34524089,-!p2@SPDEF!0.63!3.27!SPDEF;;chr11:65667846..65667868,-!p1@FOSL1!0.62!101.19!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.62!25.91!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.62!7.36!PCBP1;;chr14:21566731..21566836,-!p1@ZNF219!0.61!39.55!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.60!25.64!ELK3;;chr12:27485823..27485868,+!p2@ARNTL2!0.60!14.18!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.91!ETV4;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.00!SMAD3;;chr6:10419824..10419840,-!p9@TFAP2A!0.60!3.00!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.60!3.00!SPDEF;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.60!3.00!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.60!3.00!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.60!3.00!ZBTB38;;chr3:189507523..189507535,+!p5@TP63!0.60!3.00!TP63;;chr12:48298785..48298828,-!p1@VDR!0.59!18.55!VDR;;chr6:126240380..126240430,+!p2@NCOA7!0.59!8.73!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.58!249.56!TAX1BP3;;chr16:54320158..54320200,-!p5@IRX3!0.58!4.36!IRX3;;chr18:3449720..3449749,+!p2@TGIF1!0.57!6.55!TGIF1;;chrX:56258844..56258882,+!p1@KLF8!0.57!4.09!KLF8;;chr15:83953474..83953483,-!p3@BNC1!0.57!2.73!BNC1;;chr16:67881617..67881626,-!p6@CENPT!0.57!2.73!CENPT;;chr16:67881647..67881663,-!p3@CENPT!0.57!2.73!CENPT;;chr17:41622731..41622764,-!p5@ETV4!0.57!2.73!ETV4;;chr5:1887052..1887065,-!p2@IRX4!0.57!2.73!IRX4;;chr11:65554528..65554546,+!p1@OVOL1!0.57!2.73!OVOL1;;chr2:46524878..46524891,+!p3@EPAS1!0.56!5.18!EPAS1;;chr16:68573640..68573660,+!p3@ZFP90!0.56!3.82!ZFP90;;chr2:60780607..60780624,-!p2@BCL11A!0.55!9.27!BCL11A;;chr19:58326246..58326262,-!p2@ZNF552!0.55!7.09!ZNF552;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.27!TBX18;;chr10:3827389..3827408,-!p1@KLF6!0.54!242.47!KLF6;;chr14:62162285..62162296,+!p3@HIF1A!0.54!15.82!HIF1A;;chr7:44143978..44143989,+!p2@AEBP1!0.54!5.18!AEBP1;;chr6:28048343..28048354,+!p1@ZNF165!0.54!2.45!ZNF165;;chr6:28321909..28321965,-!p3@ZNF323!0.54!2.45!ZNF323;;chr4:299227..299272,-!p1@ZNF732!0.54!2.45!ZNF732;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.45!ZNF668;;chr17:48072574..48072597,-!p1@DLX3!0.54!2.45!DLX3;;chr17:7492979..7492991,-!p5@SOX15!0.54!2.45!SOX15;;chr20:55205825..55205847,+!p2@TFAP2C!0.54!2.45!TFAP2C;;chr13:41593425..41593480,-!p1@ELF1!0.53!19.36!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.53!12.27!LRRFIP2;;chr19:37341160..37341194,-!p2@ZNF790!0.53!6.00!ZNF790;;chr19:53496768..53496799,-!p1@ZNF702P!0.53!4.09!ZNF702P;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.73!SMAD3;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.00!IFI16;;chr6:126240356..126240379,+!p7@NCOA7!0.52!3.00!NCOA7;;chr6:21593973..21593988,+!p1@SOX4!0.51!105.28!SOX4;;chr6:106534192..106534224,+!p1@PRDM1!0.51!7.64!PRDM1;;chr2:10091815..10091864,+!p1@GRHL1!0.51!3.27!GRHL1;;chr10:51572408..51572454,+!p3@NCOA4!0.50!16.36!NCOA4;;chr4:87857474..87857489,+!p7@AFF1!0.50!4.36!AFF1;;chr2:46612891..46612907,+!p10@EPAS1!0.50!2.18!EPAS1;;chr4:111558135..111558198,-!p2@PITX2!0.50!2.18!PITX2;;chr10:64018918..64018936,+!p2@ZNF365!0.50!2.18!ZNF365;;chr1:2461692..2461710,-!p1@HES5!0.50!2.18!HES5;;chr20:22565185..22565223,-!p3@FOXA2!0.50!2.18!FOXA2;;chr20:50722202..50722217,-!p7@ZFP64!0.50!2.18!ZFP64;;chr2:85360499..85360598,+!p1@TCF7L1!0.49!15.27!TCF7L1;;chr6:15246200..15246214,+!p2@JARID2!0.49!7.09!JARID2;;chr12:96588279..96588299,+!p4@ELK3!0.48!12.55!ELK3;;chr6:1312325..1312340,+!p1@FOXQ1!0.48!3.82!FOXQ1;;chr20:6748325..6748352,+!p1@BMP2!0.48!3.27!BMP2;;chr3:5021026..5021035,+!p5@BHLHE40!0.48!2.73!BHLHE40;;chr14:62162258..62162269,+!p2@HIF1A!0.47!25.64!HIF1A;;chr12:66218443..66218461,+!p8@HMGA2!0.47!2.73!HMGA2;;chr11:47236584..47236679,+!p1@DDB2!0.46!28.09!DDB2;;chr22:42229210..42229229,+!p3@SREBF2!0.46!5.45!SREBF2;;chr16:79634595..79634620,-!p2@MAF!0.46!4.09!MAF;;chr21:36260295..36260310,-!p3@RUNX1!0.46!3.55!RUNX1;;chr19:42636625..42636632,-!p2@POU2F2!0.46!1.91!POU2F2;;chr1:24646263..24646277,+!p4@GRHL3!0.46!1.91!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.46!1.91!OVOL2;;chr11:34643638..34643667,+!p8@EHF!0.46!1.91!EHF;;chr12:66357317..66357328,+!p19@HMGA2!0.46!1.91!HMGA2;;chr5:134369643..134369675,-!p4@PITX1!0.46!1.91!PITX1;;chr5:139492456..139492489,+!p7@PURA!0.46!1.91!PURA;;chr6:10412640..10412655,-!p14@TFAP2A!0.46!1.91!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.46!1.91!GRHL2;;chrX:56258900..56258917,+!p4@KLF8!0.46!1.91!KLF8;;chr3:69811858..69811881,+!p5@MITF!0.46!1.91!MITF;;chr12:80084303..80084332,-!p1@PAWR!0.45!14.46!PAWR;;chr19:45579725..45579743,-!p1@ZNF296!0.45!10.91!ZNF296;;chr19:9785724..9785740,-!p2@ZNF562!0.45!9.55!ZNF562;;chr4:4291837..4291859,-!p2@LYAR!0.45!7.64!LYAR;;chr5:43067636..43067674,+!p6@ZNF131!0.45!2.73!ZNF131;;chr1:151032739..151032748,+!p6@MLLT11!0.45!2.45!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.44!4.36!MLLT11;;chr6:21597514..21597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2F2!0.13!0.82!NR2F2;;chr12:80083722..80083766,-!p12@PAWR!0.13!0.82!PAWR;;chr13:41635486..41635497,-!p11@ELF1!0.13!0.82!ELF1;;chr2:176033027..176033050,-!p3@ATF2!0.13!0.82!ATF2;;chr2:192015701..192015743,-!p1@STAT4!0.13!0.82!STAT4;;chr3:170075124..170075136,+!p4@SKIL!0.13!0.82!SKIL;;chr2:176033054..176033065,-!p4@ATF2!0.13!0.55!ATF2;;chr4:81105027..81105039,+!p3@PRDM8!0.13!0.55!PRDM8;;chr20:44600184..44600198,-!p6@ZNF335!0.13!0.55!ZNF335;;chr10:3824229..3824253,-!p7@KLF6!0.13!0.55!KLF6;;chr11:65430535..65430549,-!p4@RELA!0.13!0.55!RELA;;chr6:20402070..20402082,+!p5@E2F3!0.13!0.55!E2F3;;chr6:44355325..44355340,+!p4@CDC5L!0.13!0.55!CDC5L;;chr7:99679311..99679322,-!p3@ZNF3!0.13!0.55!ZNF3;;chr12:56753869..56753930,-!p1@STAT2!0.12!52.91!STAT2;;chr2:176032843..176032941,-!p1@ATF2!0.12!48.28!ATF2;;chr14:24630465..24630531,+!p1@IRF9!0.12!45.55!IRF9;;chrX:53254373..53254406,-!p1@KDM5C!0.12!43.64!KDM5C;;chr14:89029366..89029425,+!p1@ZC3H14!0.12!27.55!ZC3H14;;chr3:71114066..71114114,-!p1@FOXP1!0.12!24.00!FOXP1;;chr1:67390665..67390698,+!p1@MIER1!0.12!15.82!MIER1;;chr18:32870260..32870293,+!p1@ZNF271!0.12!14.46!ZNF271;;chr4:95128748..95128794,+!p1@SMARCAD1!0.12!14.18!SMARCAD1;;chr6:41514305..41514359,+!p2@FOXP4!0.12!9.27!FOXP4;;chr14:74226961..74227020,-!p1@C14orf43!0.12!7.09!C14orf43;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.12!6.82!SNAPC4;;chr16:30537839..30537929,-!p1@ZNF768!0.12!6.82!ZNF768;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.12!4.64!TAL1;;chr19:12251144..12251181,-!p2@ZNF20!0.12!4.36!ZNF20;;chr18:5296001..5296045,-!p1@ZFP161!0.12!3.82!ZFP161;;chr12:54019757..54019804,-!p2@ATF7!0.12!3.82!ATF7;;chr2:174828836..174828885,-!p5@SP3!0.12!3.55!SP3;;chr8:37963407..37963454,+!p2@ASH2L!0.12!2.73!ASH2L;;chr8:116681409..116681431,-!p2@TRPS1!0.12!2.45!TRPS1;;chr8:67525473..67525518,-!p1@MYBL1!0.12!1.91!MYBL1;;chr11:64073006..64073017,+!p3@ESRRA!0.12!1.91!ESRRA;;chr1:935398..935465,-!p2@HES4!0.12!1.64!HES4;;chr19:15560730..15560772,-!p3@WIZ!0.12!1.64!WIZ;;chr6:26659967..26659982,-!p1@ZNF322P1,p1@ZNF322!0.12!1.64!ZNF322;;chr8:42698494..42698507,-!p3@THAP1!0.12!1.36!THAP1;;chr1:200379180..200379191,-!p3@ZNF281!0.12!1.36!ZNF281;;chr3:185826814..185826825,-!p3@ETV5!0.12!1.36!ETV5;;chr15:56535468..56535521,-!p2@RFX7!0.12!1.36!RFX7;;chr15:100106670..100106697,+!p4@MEF2A!0.12!1.09!MEF2A;;chr15:96875657..96875760,+!p14@NR2F2!0.12!1.09!NR2F2;;chr16:68119440..68119480,+!p4@NFATC3!0.12!1.09!NFATC3;;chr19:12551785..12551823,-!p1@ZNF443!0.12!1.09!ZNF443;;chr1:27022578..27022589,+!p5@ARID1A!0.12!1.09!ARID1A;;chr6:21594845..21594908,+!p6@SOX4!0.12!1.09!SOX4;;chr7:86782094..86782108,+!p5@DMTF1!0.12!1.09!DMTF1;;chr10:21823381..21823399,+!p4@MLLT10!0.12!1.09!MLLT10;;chr10:3824332..3824425,-!p4@KLF6!0.12!1.09!KLF6;;chr12:6798692..6798723,-!p5@ZNF384!0.12!1.09!ZNF384;;chr2:231084723..231084734,-!p4@SP110!0.12!1.09!SP110;;chr6:108882364..108882391,+!p4@FOXO3!0.12!0.82!FOXO3;;chr7:104752306..104752335,+!p4@MLL5!0.12!0.82!MLL5;;chr15:67358128..67358133,+!p12@SMAD3!0.12!0.82!SMAD3;;chr19:53324884..53324886,-!p1@ZNF28!0.12!0.82!ZNF28;;chr1:42800614..42800649,-!p5@FOXJ3!0.12!0.82!FOXJ3;;chr19:58193388..58193411,+!p2@ZNF551,p4@ZNF776!0.12!0.55!ZNF551;;chr1:235491168..235491187,-!p3@ARID4B!0.12!0.55!ARID4B;;chr15:96869222..96869251,+!p18@NR2F2!0.12!0.55!NR2F2;;chr17:38256695..38256706,-!p7@NR1D1!0.12!0.55!NR1D1;;chr19:36545320..36545335,-!p5@THAP8!0.12!0.55!THAP8;;chr4:81104958..81104981,+!p5@PRDM8!0.12!0.55!PRDM8;;chr5:72743793..72743855,-!p4@FOXD1!0.12!0.55!FOXD1;;chr7:111846777..111846804,+!p2@ZNF277!0.12!0.55!ZNF277;;chr7:77428282..77428293,+!p4@PHTF2!0.12!0.55!PHTF2;;chr9:110250697..110250738,-!p2@KLF4!0.12!0.55!KLF4;;
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=

Revision as of 20:31, 9 July 2012


Name:Gingival epithelial cells, donor2 (GEA14)
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuegum
dev stage38 years old adult
sexfemale
age38
cell typeepithelial cell
cell lineNA
companyN/A
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11896



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11896



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11896


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)